Query 028451
Match_columns 209
No_of_seqs 131 out of 1199
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 6.4E-41 2.2E-45 264.8 17.6 187 9-207 101-287 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.2E-40 4.2E-45 262.6 16.9 196 9-207 4-202 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.4E-40 4.9E-45 262.1 15.1 187 11-206 111-297 (297)
4 2lck_A Mitochondrial uncouplin 100.0 8.1E-40 2.8E-44 258.5 17.7 191 14-208 3-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 47.3 23 0.00077 21.5 3.4 35 173-207 33-67 (81)
6 3f2e_A SIRV coat protein; four 39.6 29 0.001 20.6 2.9 33 55-87 6-42 (100)
7 1pp9_G Ubiquinol-cytochrome C 35.3 43 0.0015 20.2 3.3 36 172-207 32-67 (81)
8 3fbl_A Putative uncharacterize 32.0 31 0.0011 19.5 2.1 27 61-87 5-35 (82)
9 3cx5_H Cytochrome B-C1 complex 19.2 66 0.0023 19.9 2.1 36 172-207 42-77 (93)
10 2l5r_A Antimicrobial peptide a 17.6 85 0.0029 13.7 2.9 21 64-85 2-22 (26)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6.4e-41 Score=264.82 Aligned_cols=187 Identities=27% Similarity=0.393 Sum_probs=168.6
Q ss_pred ccchHHHHHHHHHHHHhHHHhhchhHHHHHHHhccccccCCCCCcccCCCCHHHHHHHHHHhhhHHHHhhhhHHHHHHHh
Q 028451 9 EISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQC 88 (209)
Q Consensus 9 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~ 88 (209)
..+....+++|++|++++.++++|+|++|+|+|++.... ....|++.++++++|+++||++|||||+.+++++++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 175 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG-----GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-----CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-----CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHH
Confidence 367788999999999999999999999999999986421 234789999999999999999999999999999999
Q ss_pred hccceeeeehHHhhhhhccCCCCCCchhHHHHHHHHHHhHhhhhccCcHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHH
Q 028451 89 IYGGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTI 168 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i 168 (209)
+..+++|.+||.+++.+.+... ...+....+++|++||++++++++|+|+||+|+|.+.. ..|.++++|++++
T Consensus 176 ~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~------~~y~~~~~~~~~i 248 (303)
T 2lck_A 176 IVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL------GQYHSAGHCALTM 248 (303)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS------SSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc------cccCCHHHHHHHH
Confidence 9999999999999998865332 23456778999999999999999999999999999863 2699999999999
Q ss_pred HhhhchhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhh
Q 028451 169 VRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKEVNS 207 (209)
Q Consensus 169 ~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 207 (209)
+++||++|||||+.++++|.+|.++++|.+||.+++.+.
T Consensus 249 ~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 249 LRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-40 Score=262.56 Aligned_cols=196 Identities=24% Similarity=0.412 Sum_probs=168.7
Q ss_pred ccchHHHHHHHHHHHHhHHHhhchhHHHHHHHhccccccCCCCCcccCCCCHHHHHHHHHHhhhHHHHhhhhHHHHHHHh
Q 028451 9 EISFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQC 88 (209)
Q Consensus 9 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~ 88 (209)
..+.+..+++|++|++++.++++|+|++|+|+|++..... ......|++.++++++++++||++|||||+.+++++++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~ 81 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ--ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS--CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc--cccccccccHHHHHHHHHhccchhheecccHHHHHHHH
Confidence 4567889999999999999999999999999999864321 11234789999999999999999999999999999999
Q ss_pred hccceeeeehHHhhhhhccC-CCCCC--chhHHHHHHHHHHhHhhhhccCcHHHHHHHHhhcCCCCCCCCCCCCCHHHHH
Q 028451 89 IYGGLRIGLYDPVKTFLVGS-DFVGD--IPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAY 165 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~ 165 (209)
+..+++|.+||.+++.+.+. +.... .+....+++|++||++++++++|+|+||+|+|++.... +....|.++++++
T Consensus 82 ~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~ 160 (297)
T 1okc_A 82 PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHH
Confidence 99999999999999954322 22222 23467899999999999999999999999999986421 2234789999999
Q ss_pred HHHHhhhchhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhh
Q 028451 166 CTIVRQEGLGALWTGLGPNIARNAIVNAAELASYDQVKEVNS 207 (209)
Q Consensus 166 ~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 207 (209)
++++++||++|||||+.+++++.+|.++++|.+||.+++.+.
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-40 Score=262.12 Aligned_cols=187 Identities=25% Similarity=0.384 Sum_probs=160.8
Q ss_pred chHHHHHHHHHHHHhHHHhhchhHHHHHHHhccccccCCCCCcccCCCCHHHHHHHHHHhhhHHHHhhhhHHHHHHHhhc
Q 028451 11 SFAQTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASGDGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIY 90 (209)
Q Consensus 11 ~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 90 (209)
.....+++|++|++++.++++|+|+||+|+|++.... .....|++.++++++++++||++|||||+.++++++++.
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 186 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG----AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS----TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC----CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHH
Confidence 4577899999999999999999999999999985321 123478999999999999999999999999999999999
Q ss_pred cceeeeehHHhhhhhccCCCCCCchhHHHHHHHHHHhHhhhhccCcHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHh
Q 028451 91 GGLRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVR 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i~~ 170 (209)
.+++|.+||.+++.+.+. .+.+....+++|++|+++++++++|+|+||+|+|++...+ .....|+++++|++++++
T Consensus 187 ~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~-~~~~~y~~~~~~~~~i~~ 262 (297)
T 1okc_A 187 RAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK-GADIMYTGTVDCWRKIAK 262 (297)
T ss_dssp HHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-GGGCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC-CCCCCCCCHHHHHHHHHH
Confidence 999999999999987543 2345677899999999999999999999999999875422 123479999999999999
Q ss_pred hhchhhhhcCchHHHHHHHHHhchHHHhHHHHHHHh
Q 028451 171 QEGLGALWTGLGPNIARNAIVNAAELASYDQVKEVN 206 (209)
Q Consensus 171 ~~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~ 206 (209)
+||++|||||+.++++|. +.+++.|.+||.+++.+
T Consensus 263 ~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 263 DEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999999996 57899999999988753
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.1e-40 Score=258.49 Aligned_cols=191 Identities=47% Similarity=0.771 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhHHHhhchhHHHHHHHhccccccCC-CCCcccCCCCHHHHHHHHHHhhhHHHHhhhhHHHHHHHhhccc
Q 028451 14 QTFLCSAFAACFAELCTIPLDTAKVRLQLQKKTASG-DGVSVSKYRGLMGTVVTIAREEGLWALWNGVIAGLHRQCIYGG 92 (209)
Q Consensus 14 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 92 (209)
..+++|++|++++.++++|+|++|+|+|++...... .......|++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998643210 0001346899999999999999999999999999999999999
Q ss_pred eeeeehHHhhhhhccCCCCCCchhHHHHHHHHHHhHhhhhccCcHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHhhh
Q 028451 93 LRIGLYDPVKTFLVGSDFVGDIPLYQKIFAALLTGAIAIVVANPTDLVKVRLQAEGKLPSGVPRRYYGALDAYCTIVRQE 172 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 172 (209)
++|.+||.+++.+.+... ..+....+++|++||+++.++++|+|+||+|+|++... .....|.+.++++++|+++|
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 999999999999865422 35678899999999999999999999999999998642 22347999999999999999
Q ss_pred chhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhhc
Q 028451 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKEVNSL 208 (209)
Q Consensus 173 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 208 (209)
|++|||||+.+++++.+|.++++|.+||.+++.+.+
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=47.33 E-value=23 Score=21.45 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=26.6
Q ss_pred chhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhh
Q 028451 173 GLGALWTGLGPNIARNAIVNAAELASYDQVKEVNS 207 (209)
Q Consensus 173 G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 207 (209)
|+...+|-+..+++..+|...+.+.+|++.++..+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444566888899999999999999888654
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=39.61 E-value=29 Score=20.63 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHHHHhhhH----HHHhhhhHHHHHHH
Q 028451 55 SKYRGLMGTVVTIAREEGL----WALWNGVIAGLHRQ 87 (209)
Q Consensus 55 ~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~ 87 (209)
+++.++-+-...+..+.|+ +.+|+||...+.|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 4666666666777777775 78899999888763
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=35.25 E-value=43 Score=20.21 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=28.3
Q ss_pred hchhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhh
Q 028451 172 EGLGALWTGLGPNIARNAIVNAAELASYDQVKEVNS 207 (209)
Q Consensus 172 ~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 207 (209)
.|+...+|-+.-+++..+|...+.+.+|++.++..+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 355556666777888889999999999999887654
No 8
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=31.97 E-value=31 Score=19.52 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhH----HHHhhhhHHHHHHH
Q 028451 61 MGTVVTIAREEGL----WALWNGVIAGLHRQ 87 (209)
Q Consensus 61 ~~~~~~i~~~~G~----~~ly~G~~~~~~~~ 87 (209)
.-+++++++.+|+ .|+|-.|+-.++..
T Consensus 5 rlaikeicktdgipnikwgmyiafgekllks 35 (82)
T 3fbl_A 5 RLAIKEICKTDGIPNIKWGMYIAFGEKLLKS 35 (82)
T ss_dssp HHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCcchhHHHHHHHHHHHHH
Confidence 4578899999996 56676666666654
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=19.23 E-value=66 Score=19.94 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=26.6
Q ss_pred hchhhhhcCchHHHHHHHHHhchHHHhHHHHHHHhh
Q 028451 172 EGLGALWTGLGPNIARNAIVNAAELASYDQVKEVNS 207 (209)
Q Consensus 172 ~G~~~ly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~ 207 (209)
+|+...+|-+..+++..+|...+.+.+|++.++..+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e 77 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE 77 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHH
Confidence 344555555666777888999999999999887653
No 10
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=17.59 E-value=85 Score=13.75 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHHhhhhHHHHH
Q 028451 64 VVTIAREEGLWALWNGVIAGLH 85 (209)
Q Consensus 64 ~~~i~~~~G~~~ly~G~~~~~~ 85 (209)
+++|++ .|+.+|-+|..+.+.
T Consensus 2 lkeifk-aglgslvkgiaahva 22 (26)
T 2l5r_A 2 LKEIFK-AGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhHHHHHHHHHHHHh
Confidence 355554 368888888766543
Done!