Query 028452
Match_columns 208
No_of_seqs 108 out of 516
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ws9_4 P1; 3.00A {Equine rhini 15.6 47 0.0016 23.1 0.8 20 132-151 13-32 (80)
2 1rzh_H Reaction center protein 11.4 1.5E+02 0.0053 25.1 3.0 35 31-65 11-45 (260)
3 1ixd_A Cylindromatosis tumour- 11.2 64 0.0022 23.5 0.5 27 143-169 47-77 (104)
4 2l9u_A Receptor tyrosine-prote 10.7 2.1E+02 0.0072 17.0 2.6 18 110-127 17-34 (40)
5 1eys_H Photosynthetic reaction 10.0 1.8E+02 0.0062 24.6 2.9 35 31-65 10-44 (259)
6 2qkl_B SPAC19A8.12 protein, SP 8.9 73 0.0025 22.9 0.1 20 143-165 47-66 (95)
7 2mev_4 Mengo virus coat protei 8.6 77 0.0026 21.6 0.1 17 132-148 12-28 (70)
8 1qqp_4 FMDV, protein (genome p 8.5 73 0.0025 22.3 -0.1 20 132-151 13-32 (85)
9 2jsh_A Appetite-regulating hor 8.4 41 0.0014 18.7 -1.1 14 178-191 9-22 (26)
10 1tme_4 Theiler'S murine enceph 8.0 88 0.003 21.4 0.2 20 132-151 12-31 (71)
No 1
>2ws9_4 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_4 2xbo_4*
Probab=15.58 E-value=47 Score=23.11 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=13.6
Q ss_pred CCCCCCCChhhhhhcCcccC
Q 028452 132 TDSGSCGNIIIDFYWGMELY 151 (208)
Q Consensus 132 ~~~g~sGn~iyDff~G~ELN 151 (208)
+..|++|++++.|||=.=-|
T Consensus 13 nsSGN~G~IvnNfYsnqYqn 32 (80)
T 2ws9_4 13 NMSGNSGSIVQNFYMQQYQN 32 (80)
T ss_dssp ---CCCCCGGGGSSCHHHHS
T ss_pred ccCCccceeeehhhhhhhhh
Confidence 46889999999999854333
No 2
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=11.41 E-value=1.5e+02 Score=25.09 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCcceeeCcCCCCC
Q 028452 31 TAVAWKLIACFGAFEAALQLLLPGKRVEGPISPTG 65 (208)
Q Consensus 31 t~~a~~~y~~~~~~q~lL~~~lPG~~v~G~~~~~G 65 (208)
+-....+|+.|++|-.+++.+--=.+-||.|+.+.
T Consensus 11 D~Aq~~l~~Fw~ffa~Li~yL~~E~~REGYPl~~~ 45 (260)
T 1rzh_H 11 DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENE 45 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCBCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccCCccccC
Confidence 35667889999999999888888788899987644
No 3
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=11.19 E-value=64 Score=23.54 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.2
Q ss_pred hhhcCccc-CCccc---cceecccccccchh
Q 028452 143 DFYWGMEL-YPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 143 Dff~G~EL-NPRig---~~~DlK~f~e~R~g 169 (208)
..|.|.|| ++..| +.+|=|.+++|++.
T Consensus 47 G~wvGVEldDep~GKnDGsv~G~rYF~C~p~ 77 (104)
T 1ixd_A 47 EVLAGLELEDECAGCTDGTFRGTRYFTCALK 77 (104)
T ss_dssp CCEEEEEESSCCTTCBSSEETTEECSCCCTT
T ss_pred ceEEEEEecCCCCCCCCCEECCEEeeecCCC
Confidence 57899999 77674 36777777788764
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.71 E-value=2.1e+02 Score=16.99 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhccc
Q 028452 110 LIFGSFIFCIFLYIKGHL 127 (208)
Q Consensus 110 ~~i~s~~~s~~lyvk~~~ 127 (208)
+++|-.+-++++|.++++
T Consensus 17 ~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEcccc
Confidence 445555667888988764
No 5
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=9.96 E-value=1.8e+02 Score=24.59 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCcceeeCcCCCCC
Q 028452 31 TAVAWKLIACFGAFEAALQLLLPGKRVEGPISPTG 65 (208)
Q Consensus 31 t~~a~~~y~~~~~~q~lL~~~lPG~~v~G~~~~~G 65 (208)
+-....+|+.|++|-.+++.+--=..-||.|+.+.
T Consensus 10 d~a~~~~~~fw~ffa~li~yl~~e~~regypl~~~ 44 (259)
T 1eys_H 10 DAAQITIWAFWLFFFGLIIYLRREDKREGYPLDSN 44 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCBC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccCCCcccC
Confidence 35677889999999999888877788899887644
No 6
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=8.88 E-value=73 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.5
Q ss_pred hhhcCcccCCccccceecccccc
Q 028452 143 DFYWGMELYPRIGKNFDIKVFTN 165 (208)
Q Consensus 143 Dff~G~ELNPRig~~~DlK~f~e 165 (208)
||+ ++.||++- ...+|.|++
T Consensus 47 Df~--~~~np~Lp-~~~lk~F~~ 66 (95)
T 2qkl_B 47 DFI--RAQNDQLP-SLGLRVFSA 66 (95)
T ss_dssp HTT--TTTCTTSC-CCCHHHHHH
T ss_pred ccc--cccCCCCC-CCcHHHHHH
Confidence 666 69999987 689999984
No 7
>2mev_4 Mengo virus coat protein (subunit VP4); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_4
Probab=8.62 E-value=77 Score=21.64 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.7
Q ss_pred CCCCCCCChhhhhhcCc
Q 028452 132 TDSGSCGNIIIDFYWGM 148 (208)
Q Consensus 132 ~~~g~sGn~iyDff~G~ 148 (208)
...|++|.+++.|||=.
T Consensus 12 nssGN~G~ivnN~Y~n~ 28 (70)
T 2mev_4 12 SSEGNEGVIINNFYSNQ 28 (70)
T ss_dssp -CCCSCCCSSCCSSCHH
T ss_pred ccCCCcceeeehhhhhh
Confidence 46889999999999843
No 8
>1qqp_4 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_4* 2wzr_4 1fod_4 1fmd_4 1zba_4* 1zbe_4
Probab=8.53 E-value=73 Score=22.31 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=14.7
Q ss_pred CCCCCCCChhhhhhcCcccC
Q 028452 132 TDSGSCGNIIIDFYWGMELY 151 (208)
Q Consensus 132 ~~~g~sGn~iyDff~G~ELN 151 (208)
+..|++|++++.|||-.=-|
T Consensus 13 nssGN~GtIvnNfY~nqYqn 32 (85)
T 1qqp_4 13 NQSGNTGSIINNYYMQQYQN 32 (85)
T ss_dssp --CCSCCCCSCCSSCHHHHS
T ss_pred cccCccceeeehhhhhhhhc
Confidence 46899999999999854443
No 9
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=8.41 E-value=41 Score=18.72 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCC
Q 028452 178 VTYCIKQFCSHCFL 191 (208)
Q Consensus 178 ls~a~kQye~~G~v 191 (208)
+.+.-.||++||.+
T Consensus 9 i~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 9 IKLSGAQYQQHGRA 22 (26)
T ss_dssp GGGHHHHCSCSSSC
T ss_pred eEecHHHHHHHhHH
Confidence 34557899999864
No 10
>1tme_4 Theiler'S murine encephalomyelitis virus (subunit VP4); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_4
Probab=8.00 E-value=88 Score=21.41 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=14.6
Q ss_pred CCCCCCCChhhhhhcCcccC
Q 028452 132 TDSGSCGNIIIDFYWGMELY 151 (208)
Q Consensus 132 ~~~g~sGn~iyDff~G~ELN 151 (208)
...|++|.+++.|||=.=-|
T Consensus 12 ~ssGN~G~iinNfY~nqYqn 31 (71)
T 1tme_4 12 QSSGNEGVIINNFYSNQYQN 31 (71)
T ss_dssp --CCSCCCTTCCSSCHHHHS
T ss_pred ccCCCcceeeehhhhhhhhc
Confidence 46889999999999854444
Done!