Query 028452
Match_columns 208
No_of_seqs 108 out of 516
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 19:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028452.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028452hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysh2 f.23.10.1 (H:7-43) Pho 32.5 17 0.0012 20.4 2.6 32 32-63 5-36 (37)
2 d1uptb_ a.193.1.1 (B:) Golgi a 15.6 18 0.0013 22.3 0.4 11 139-149 10-20 (58)
3 d1ixda_ b.34.10.1 (A:) Cylindr 13.9 22 0.0016 24.3 0.5 27 143-169 47-77 (104)
4 d2r7ka2 d.142.1.9 (A:124-361) 10.0 33 0.0024 25.4 0.4 10 148-157 186-195 (238)
5 d2r85a2 d.142.1.9 (A:100-334) 8.6 43 0.0031 24.4 0.5 13 148-160 183-195 (235)
6 d2e3ha1 b.34.10.1 (A:212-282) 8.3 46 0.0034 20.9 0.5 26 144-169 29-57 (71)
7 d1q90n_ f.23.27.1 (N:) PetN su 7.7 1.7E+02 0.012 15.2 3.0 21 105-125 7-27 (31)
8 d2e3ia1 b.34.10.1 (A:58-128) R 7.6 52 0.0038 20.7 0.5 26 144-169 29-57 (71)
9 d2coza1 b.34.10.1 (A:8-116) Ce 6.7 56 0.0041 22.3 0.3 27 143-169 52-81 (109)
10 d2hqha1 b.34.10.1 (A:26-97) Dy 6.3 66 0.0048 20.2 0.5 26 144-169 31-59 (72)
No 1
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=32.46 E-value=17 Score=20.44 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcceeeCcCCC
Q 028452 32 AVAWKLIACFGAFEAALQLLLPGKRVEGPISP 63 (208)
Q Consensus 32 ~~a~~~y~~~~~~q~lL~~~lPG~~v~G~~~~ 63 (208)
-....+|+.|++|-.+.+.+---..-||.|+.
T Consensus 5 ~Aql~ly~Fw~FFagLi~YL~rE~~REGyPle 36 (37)
T d1eysh2 5 AAQITIWAFWLFFFGLIIYLRREDKREGYPLD 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 45667889999988887777666666776653
No 2
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.64 E-value=18 Score=22.30 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=9.7
Q ss_pred ChhhhhhcCcc
Q 028452 139 NIIIDFYWGME 149 (208)
Q Consensus 139 n~iyDff~G~E 149 (208)
|++|.+.||+|
T Consensus 10 nvLfeYMmG~E 20 (58)
T d1uptb_ 10 KVLFEYMMGRE 20 (58)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCcc
Confidence 78999999986
No 3
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.87 E-value=22 Score=24.31 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.3
Q ss_pred hhhcCccc-CCccc---cceecccccccchh
Q 028452 143 DFYWGMEL-YPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 143 Dff~G~EL-NPRig---~~~DlK~f~e~R~g 169 (208)
.-|.|.|| +|-.| +.+|=|.+++|++.
T Consensus 47 g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~ 77 (104)
T d1ixda_ 47 EVLAGLELEDECAGCTDGTFRGTRYFTCALK 77 (104)
T ss_dssp CCEEEEEESSCCTTCBSSEETTEECSCCCTT
T ss_pred CcEEEEEeCCCCCCCcCCEECCEEEEecCCC
Confidence 36789999 77664 36888888888763
No 4
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=9.97 E-value=33 Score=25.39 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=8.5
Q ss_pred cccCCccccc
Q 028452 148 MELYPRIGKN 157 (208)
Q Consensus 148 ~ELNPRig~~ 157 (208)
.|+|||++++
T Consensus 186 iEinpR~~G~ 195 (238)
T d2r7ka2 186 FEMSARVDGG 195 (238)
T ss_dssp EEEESSBCGG
T ss_pred EEEECCCCCC
Confidence 7999999754
No 5
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=8.59 E-value=43 Score=24.36 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=9.5
Q ss_pred cccCCccccceec
Q 028452 148 MELYPRIGKNFDI 160 (208)
Q Consensus 148 ~ELNPRig~~~Dl 160 (208)
.|.|||++++..+
T Consensus 183 iEiNpR~~Gg~~~ 195 (235)
T d2r85a2 183 FEISARIVAGTNI 195 (235)
T ss_dssp EEEECSCCGGGGG
T ss_pred EEEeCCCCCCCcc
Confidence 5999999655443
No 6
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.33 E-value=46 Score=20.90 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=20.5
Q ss_pred hhcCcccCCccc---cceecccccccchh
Q 028452 144 FYWGMELYPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 144 ff~G~ELNPRig---~~~DlK~f~e~R~g 169 (208)
.|.|.||+=.+| +.+|=|.+++|+|.
T Consensus 29 ~~~GVeld~~~Gk~dG~~~G~~YF~c~~~ 57 (71)
T d2e3ha1 29 EWCGVELDEPLGKNDGAVAGTRYFQCQPK 57 (71)
T ss_dssp EEEEEEESSSCCSBSSEETTEESCCCCTT
T ss_pred CEEEEEECCCCCCCCCEECCEEEEecCCC
Confidence 578999987775 37888888889874
No 7
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.69 E-value=1.7e+02 Score=15.17 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 028452 105 EIYSALIFGSFIFCIFLYIKG 125 (208)
Q Consensus 105 ~ll~a~~i~s~~~s~~lyvk~ 125 (208)
++.++++..-|.+|+-+.+.+
T Consensus 7 ~~awaa~~atfsfslslvvwg 27 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEe
Confidence 344444443344444444444
No 8
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.61 E-value=52 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=20.0
Q ss_pred hhcCcccCCccc---cceecccccccchh
Q 028452 144 FYWGMELYPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 144 ff~G~ELNPRig---~~~DlK~f~e~R~g 169 (208)
-|.|.||+=.+| +.+|=|.+++|+|+
T Consensus 29 ~~vGVEld~p~Gk~dGt~~G~~YF~c~~~ 57 (71)
T d2e3ia1 29 QWAGIVLDEPIGKNDGSVAGVRYFQCEPL 57 (71)
T ss_dssp EEEEEEESSSCSSBSSEETTEESSCCSTT
T ss_pred cEEEEEECCCCCCCCCEECCEEEEecCCC
Confidence 478999987775 36777788888874
No 9
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.72 E-value=56 Score=22.30 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred hhhcCcccCCccc---cceecccccccchh
Q 028452 143 DFYWGMELYPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 143 Dff~G~ELNPRig---~~~DlK~f~e~R~g 169 (208)
..|.|.||+=.+| +.+|=|.+++|+|+
T Consensus 52 g~~vGVElDep~GkndGtv~G~~YF~C~~~ 81 (109)
T d2coza1 52 GFWAGVELDKPEGNNNGTYDGIAYFECKEK 81 (109)
T ss_dssp SEEEEEEESSTTSSBCSEETTEECCCCCSS
T ss_pred CcEEEEEecCCCCCCCCEECCEEEEecCCC
Confidence 3788999987786 36777888889874
No 10
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=66 Score=20.20 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=20.1
Q ss_pred hhcCcccCCccc---cceecccccccchh
Q 028452 144 FYWGMELYPRIG---KNFDIKVFTNCRFG 169 (208)
Q Consensus 144 ff~G~ELNPRig---~~~DlK~f~e~R~g 169 (208)
.|.|.||+=..| +.+|=|.+++|+|.
T Consensus 31 ~~vGVeldep~GkndGt~~G~~YF~C~~~ 59 (72)
T d2hqha1 31 KWVGVILDEAKGKNDGTVQGRKYFTCDEG 59 (72)
T ss_dssp CEEEEEESSSCSSBSSEETTEESSCCCTT
T ss_pred cEEEEEEccCCCCCCCEECCEEEEecCCC
Confidence 578999987675 36888888889874
Done!