Query 028459
Match_columns 208
No_of_seqs 254 out of 1846
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 11:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.6 5.1E-17 1.1E-21 142.7 -0.5 201 1-206 25-273 (344)
2 PHA02929 N1R/p28-like protein; 99.4 3.2E-13 6.8E-18 113.6 3.6 56 107-162 172-235 (238)
3 PHA02926 zinc finger-like prot 99.3 1.7E-12 3.7E-17 106.9 3.2 57 107-163 168-239 (242)
4 PF13639 zf-RING_2: Ring finge 99.3 6.5E-13 1.4E-17 83.4 0.1 41 110-150 1-44 (44)
5 PLN03208 E3 ubiquitin-protein 99.3 4.7E-12 1E-16 102.8 5.0 52 104-155 13-80 (193)
6 KOG0317 Predicted E3 ubiquitin 99.2 5.6E-12 1.2E-16 107.2 4.0 48 107-154 237-284 (293)
7 PF13920 zf-C3HC4_3: Zinc fing 99.2 3.2E-12 7E-17 82.5 2.0 47 109-155 2-49 (50)
8 PF12678 zf-rbx1: RING-H2 zinc 99.1 2.7E-11 5.8E-16 84.4 3.0 42 109-150 19-73 (73)
9 KOG0823 Predicted E3 ubiquitin 99.1 4.4E-11 9.6E-16 99.0 4.3 49 106-154 44-95 (230)
10 PF15227 zf-C3HC4_4: zinc fing 99.1 3.7E-11 8.1E-16 74.9 2.8 38 112-149 1-42 (42)
11 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.5E-11 5.5E-16 74.3 1.8 38 112-149 1-39 (39)
12 COG5243 HRD1 HRD ubiquitin lig 99.1 1.8E-10 3.9E-15 101.0 6.6 50 106-155 284-346 (491)
13 KOG4628 Predicted E3 ubiquitin 99.0 4.4E-10 9.4E-15 98.9 5.5 46 110-155 230-279 (348)
14 KOG0320 Predicted E3 ubiquitin 99.0 2.4E-10 5.2E-15 91.1 2.7 47 108-154 130-178 (187)
15 cd00162 RING RING-finger (Real 99.0 4.5E-10 9.8E-15 69.3 2.9 43 111-153 1-45 (45)
16 smart00504 Ubox Modified RING 98.9 8.4E-10 1.8E-14 73.9 3.7 45 110-154 2-46 (63)
17 PF00097 zf-C3HC4: Zinc finger 98.9 5.2E-10 1.1E-14 68.9 2.0 38 112-149 1-41 (41)
18 PF12861 zf-Apc11: Anaphase-pr 98.9 1.4E-09 3E-14 77.3 2.9 47 108-154 20-82 (85)
19 PF14634 zf-RING_5: zinc-RING 98.9 2.2E-09 4.8E-14 67.4 3.3 41 111-151 1-44 (44)
20 TIGR00599 rad18 DNA repair pro 98.8 1.5E-09 3.3E-14 97.4 3.4 51 105-155 22-72 (397)
21 COG5540 RING-finger-containing 98.8 1.6E-09 3.4E-14 92.9 2.5 46 109-154 323-372 (374)
22 smart00184 RING Ring finger. E 98.8 4.1E-09 9E-14 62.7 2.8 38 112-149 1-39 (39)
23 KOG2164 Predicted E3 ubiquitin 98.7 4.9E-09 1.1E-13 95.4 2.3 47 109-155 186-237 (513)
24 COG5574 PEX10 RING-finger-cont 98.7 8.4E-09 1.8E-13 87.0 2.2 48 107-154 213-262 (271)
25 KOG4172 Predicted E3 ubiquitin 98.7 5.1E-09 1.1E-13 67.8 0.5 49 108-156 6-56 (62)
26 KOG0287 Postreplication repair 98.6 8.1E-09 1.7E-13 89.8 1.1 48 107-154 21-68 (442)
27 COG5432 RAD18 RING-finger-cont 98.6 1.2E-08 2.5E-13 87.2 1.5 49 107-155 23-71 (391)
28 KOG0802 E3 ubiquitin ligase [P 98.6 2.2E-08 4.8E-13 93.9 1.6 48 106-153 288-340 (543)
29 TIGR00570 cdk7 CDK-activating 98.5 1.1E-07 2.4E-12 82.6 5.2 89 109-207 3-99 (309)
30 PF13445 zf-RING_UBOX: RING-ty 98.5 3.9E-08 8.4E-13 61.5 1.0 35 112-147 1-43 (43)
31 PF04564 U-box: U-box domain; 98.4 1.1E-07 2.4E-12 66.0 2.5 47 108-154 3-50 (73)
32 KOG2177 Predicted E3 ubiquitin 98.3 2.3E-07 5.1E-12 77.9 2.0 46 106-151 10-55 (386)
33 KOG1002 Nucleotide excision re 98.3 1.9E-07 4E-12 85.5 1.4 102 41-154 480-586 (791)
34 KOG1734 Predicted RING-contain 98.3 8E-07 1.7E-11 75.3 4.5 47 108-154 223-281 (328)
35 PF14835 zf-RING_6: zf-RING of 98.3 3.4E-07 7.5E-12 61.5 1.3 43 109-153 7-50 (65)
36 COG5194 APC11 Component of SCF 98.2 5.9E-07 1.3E-11 62.7 2.2 31 124-154 51-81 (88)
37 KOG4265 Predicted E3 ubiquitin 98.1 2.2E-06 4.7E-11 75.3 3.5 49 107-155 288-337 (349)
38 KOG0828 Predicted E3 ubiquitin 98.1 1.5E-06 3.3E-11 79.0 2.0 49 107-155 569-635 (636)
39 KOG1785 Tyrosine kinase negati 98.1 1.7E-06 3.6E-11 77.0 1.8 49 110-158 370-420 (563)
40 KOG1493 Anaphase-promoting com 98.0 9.9E-07 2.1E-11 61.1 -0.0 46 109-154 20-81 (84)
41 KOG0978 E3 ubiquitin ligase in 98.0 1.5E-06 3.2E-11 82.6 1.1 47 108-154 642-689 (698)
42 KOG4159 Predicted E3 ubiquitin 98.0 2.8E-06 6.1E-11 76.6 2.5 53 103-155 78-130 (398)
43 COG5219 Uncharacterized conser 97.9 4.1E-06 9E-11 81.2 2.4 50 106-155 1466-1524(1525)
44 KOG0824 Predicted E3 ubiquitin 97.8 7.7E-06 1.7E-10 70.4 2.1 47 109-155 7-54 (324)
45 PF11793 FANCL_C: FANCL C-term 97.8 2.8E-06 6E-11 58.6 -1.5 46 109-154 2-66 (70)
46 KOG0311 Predicted E3 ubiquitin 97.8 4E-06 8.7E-11 73.5 -0.9 48 107-154 41-90 (381)
47 KOG2930 SCF ubiquitin ligase, 97.8 5.6E-06 1.2E-10 60.6 0.0 30 124-153 78-107 (114)
48 COG5152 Uncharacterized conser 97.7 1.5E-05 3.3E-10 65.0 2.0 47 108-154 195-241 (259)
49 KOG0297 TNF receptor-associate 97.7 2.7E-05 5.8E-10 70.5 3.0 49 106-154 18-67 (391)
50 KOG0804 Cytoplasmic Zn-finger 97.7 2.6E-05 5.6E-10 70.4 2.7 47 106-154 172-222 (493)
51 smart00744 RINGv The RING-vari 97.6 3.3E-05 7.3E-10 49.5 2.3 40 111-150 1-49 (49)
52 KOG2879 Predicted E3 ubiquitin 97.6 0.00023 5.1E-09 60.7 7.3 56 100-155 230-288 (298)
53 PHA03096 p28-like protein; Pro 97.6 1.3E-05 2.8E-10 69.4 -0.5 57 110-166 179-259 (284)
54 KOG1813 Predicted E3 ubiquitin 97.5 6.1E-05 1.3E-09 64.8 2.3 46 109-154 241-286 (313)
55 KOG4692 Predicted E3 ubiquitin 97.5 0.0002 4.4E-09 63.1 5.4 49 107-155 420-468 (489)
56 PF11789 zf-Nse: Zinc-finger o 97.3 0.00016 3.6E-09 47.8 2.5 41 108-148 10-53 (57)
57 KOG0827 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 65.1 1.7 44 110-153 5-55 (465)
58 KOG0825 PHD Zn-finger protein 97.1 0.00012 2.5E-09 70.2 0.2 50 110-159 124-176 (1134)
59 KOG2660 Locus-specific chromos 97.1 0.00011 2.3E-09 64.2 -0.4 50 107-156 13-63 (331)
60 KOG1645 RING-finger-containing 97.0 0.00039 8.5E-09 62.3 2.0 45 109-153 4-55 (463)
61 KOG4275 Predicted E3 ubiquitin 96.8 0.00014 3E-09 62.6 -2.1 43 109-155 300-343 (350)
62 PF14570 zf-RING_4: RING/Ubox 96.6 0.0019 4.1E-08 41.2 2.5 42 112-153 1-47 (48)
63 COG5236 Uncharacterized conser 96.6 0.002 4.4E-08 56.8 3.5 53 103-155 55-109 (493)
64 KOG1001 Helicase-like transcri 96.6 0.00044 9.6E-09 66.5 -0.7 108 44-154 389-500 (674)
65 PF14447 Prok-RING_4: Prokaryo 96.6 0.0017 3.7E-08 42.4 2.2 44 110-155 8-51 (55)
66 KOG1571 Predicted E3 ubiquitin 96.5 0.002 4.3E-08 57.0 3.3 47 106-155 302-348 (355)
67 KOG1428 Inhibitor of type V ad 96.4 0.001 2.2E-08 67.6 0.3 69 106-183 3483-3564(3738)
68 KOG4739 Uncharacterized protei 96.2 0.0018 4E-08 54.4 1.2 44 111-156 5-50 (233)
69 PF10367 Vps39_2: Vacuolar sor 96.2 0.0039 8.4E-08 45.5 2.7 33 105-137 74-108 (109)
70 KOG3002 Zn finger protein [Gen 96.0 0.0042 9E-08 54.3 2.4 44 107-154 46-91 (299)
71 PHA02825 LAP/PHD finger-like p 95.9 0.011 2.3E-07 46.9 3.9 47 107-154 6-59 (162)
72 PF07800 DUF1644: Protein of u 95.7 0.0072 1.6E-07 47.8 2.3 31 109-139 2-45 (162)
73 KOG4185 Predicted E3 ubiquitin 95.7 0.0078 1.7E-07 52.1 2.6 44 110-153 4-54 (296)
74 KOG1814 Predicted E3 ubiquitin 95.7 0.01 2.2E-07 53.5 3.3 43 109-151 184-237 (445)
75 PHA02862 5L protein; Provision 95.5 0.011 2.5E-07 46.0 2.8 44 110-154 3-53 (156)
76 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.029 6.3E-07 48.0 5.3 48 106-154 110-161 (260)
77 KOG3800 Predicted E3 ubiquitin 95.4 0.0094 2E-07 51.4 2.2 90 111-207 2-97 (300)
78 KOG0826 Predicted E3 ubiquitin 94.9 0.023 4.9E-07 49.9 3.1 47 107-153 298-345 (357)
79 KOG1941 Acetylcholine receptor 94.7 0.011 2.3E-07 53.2 0.6 47 107-153 363-415 (518)
80 KOG2114 Vacuolar assembly/sort 94.6 0.019 4.2E-07 55.9 2.2 42 110-154 841-883 (933)
81 KOG3039 Uncharacterized conser 94.6 0.031 6.6E-07 47.4 3.1 47 108-154 220-270 (303)
82 COG5175 MOT2 Transcriptional r 94.4 0.034 7.4E-07 49.1 3.1 48 110-157 15-67 (480)
83 PF10272 Tmpp129: Putative tra 94.4 0.038 8.3E-07 49.4 3.4 29 127-155 311-352 (358)
84 COG5222 Uncharacterized conser 94.4 0.026 5.5E-07 49.1 2.1 42 110-151 275-318 (427)
85 PF05290 Baculo_IE-1: Baculovi 94.2 0.043 9.3E-07 42.2 2.8 48 108-155 79-133 (140)
86 KOG4445 Uncharacterized conser 94.2 0.014 3E-07 50.7 0.1 45 110-154 116-186 (368)
87 KOG3268 Predicted E3 ubiquitin 94.0 0.043 9.4E-07 44.3 2.7 47 111-157 167-231 (234)
88 COG5220 TFB3 Cdk activating ki 93.9 0.018 3.8E-07 48.6 0.2 47 108-154 9-64 (314)
89 PF08746 zf-RING-like: RING-li 93.3 0.093 2E-06 32.5 2.7 38 112-149 1-43 (43)
90 KOG0298 DEAD box-containing he 93.2 0.013 2.9E-07 59.2 -2.0 45 108-152 1152-1197(1394)
91 KOG3970 Predicted E3 ubiquitin 92.8 0.085 1.8E-06 44.2 2.5 47 108-154 49-105 (299)
92 PF03854 zf-P11: P-11 zinc fin 92.4 0.055 1.2E-06 34.3 0.8 41 112-154 5-46 (50)
93 KOG2034 Vacuolar sorting prote 92.1 0.12 2.6E-06 50.8 3.0 33 107-139 815-849 (911)
94 KOG1100 Predicted E3 ubiquitin 92.1 0.07 1.5E-06 44.3 1.3 40 111-154 160-200 (207)
95 PF05883 Baculo_RING: Baculovi 92.1 0.058 1.3E-06 41.7 0.7 34 109-142 26-68 (134)
96 KOG1952 Transcription factor N 92.0 0.074 1.6E-06 52.0 1.5 49 108-156 190-249 (950)
97 KOG2932 E3 ubiquitin ligase in 91.1 0.086 1.9E-06 46.1 0.8 46 109-156 90-136 (389)
98 PF12906 RINGv: RING-variant d 90.7 0.16 3.4E-06 32.1 1.6 38 112-149 1-47 (47)
99 KOG4367 Predicted Zn-finger pr 90.7 0.15 3.2E-06 46.6 1.9 35 107-141 2-36 (699)
100 KOG3799 Rab3 effector RIM1 and 90.2 0.083 1.8E-06 40.8 -0.1 58 104-165 60-129 (169)
101 KOG1940 Zn-finger protein [Gen 89.8 0.21 4.6E-06 43.1 2.1 42 110-151 159-204 (276)
102 PF14569 zf-UDP: Zinc-binding 89.5 0.32 7E-06 34.0 2.5 51 109-159 9-67 (80)
103 PLN02638 cellulose synthase A 89.3 0.57 1.2E-05 47.4 4.9 52 108-159 16-75 (1079)
104 KOG3053 Uncharacterized conser 89.3 0.21 4.5E-06 42.7 1.6 51 106-156 17-84 (293)
105 KOG4362 Transcriptional regula 87.7 0.13 2.9E-06 49.4 -0.6 45 110-154 22-69 (684)
106 PLN02400 cellulose synthase 87.5 0.79 1.7E-05 46.4 4.6 52 108-159 35-94 (1085)
107 KOG3899 Uncharacterized conser 87.4 0.27 5.9E-06 42.7 1.2 31 127-157 325-368 (381)
108 PLN02189 cellulose synthase 85.9 0.85 1.8E-05 46.0 3.9 52 108-159 33-92 (1040)
109 PLN02436 cellulose synthase A 85.3 1.4 3E-05 44.7 5.0 52 108-159 35-94 (1094)
110 KOG2817 Predicted E3 ubiquitin 84.3 0.8 1.7E-05 41.3 2.6 45 108-152 333-383 (394)
111 KOG0309 Conserved WD40 repeat- 84.2 0.49 1.1E-05 46.1 1.3 26 123-148 1044-1069(1081)
112 PLN02915 cellulose synthase A 83.4 1.8 3.8E-05 43.8 4.8 52 108-159 14-73 (1044)
113 KOG1812 Predicted E3 ubiquitin 83.3 0.65 1.4E-05 42.1 1.7 34 108-141 145-182 (384)
114 KOG1815 Predicted E3 ubiquitin 82.8 0.81 1.8E-05 42.2 2.1 35 107-141 68-103 (444)
115 COG5183 SSM4 Protein involved 82.8 1.2 2.7E-05 43.7 3.3 49 108-156 11-68 (1175)
116 KOG3161 Predicted E3 ubiquitin 81.6 0.54 1.2E-05 45.0 0.5 36 110-147 12-51 (861)
117 KOG0825 PHD Zn-finger protein 77.5 1.6 3.5E-05 42.8 2.3 45 110-154 97-154 (1134)
118 KOG3579 Predicted E3 ubiquitin 72.9 1.3 2.8E-05 38.5 0.3 34 108-141 267-304 (352)
119 PF04216 FdhE: Protein involve 72.8 1.1 2.3E-05 38.9 -0.2 45 107-151 170-219 (290)
120 KOG0269 WD40 repeat-containing 72.5 2.5 5.4E-05 41.3 2.2 41 111-151 781-825 (839)
121 PF10571 UPF0547: Uncharacteri 70.9 2.8 6.1E-05 23.1 1.3 21 111-131 2-24 (26)
122 KOG3039 Uncharacterized conser 70.3 3.4 7.3E-05 35.3 2.2 32 108-139 42-73 (303)
123 PF02891 zf-MIZ: MIZ/SP-RING z 69.1 3.8 8.3E-05 26.0 1.8 42 110-152 3-50 (50)
124 KOG2068 MOT2 transcription fac 68.9 4.5 9.7E-05 35.8 2.8 45 110-154 250-298 (327)
125 KOG1812 Predicted E3 ubiquitin 67.2 4.2 9.1E-05 36.9 2.4 40 109-149 306-351 (384)
126 KOG4718 Non-SMC (structural ma 66.8 2.8 6.1E-05 34.9 1.1 46 108-153 180-226 (235)
127 KOG3842 Adaptor protein Pellin 66.7 8 0.00017 34.3 3.8 49 107-155 339-415 (429)
128 PF02318 FYVE_2: FYVE-type zin 66.6 3.6 7.8E-05 30.8 1.6 45 108-153 53-104 (118)
129 smart00647 IBR In Between Ring 66.4 1.7 3.8E-05 28.1 -0.2 17 125-141 44-60 (64)
130 PRK03564 formate dehydrogenase 65.2 2.7 5.9E-05 37.0 0.7 44 108-151 186-234 (309)
131 KOG3113 Uncharacterized conser 65.1 6.1 0.00013 33.9 2.8 46 107-154 109-158 (293)
132 PF09723 Zn-ribbon_8: Zinc rib 64.7 2.4 5.1E-05 25.9 0.2 30 125-155 9-39 (42)
133 PF10146 zf-C4H2: Zinc finger- 64.0 5.6 0.00012 33.6 2.4 29 131-159 196-224 (230)
134 PLN02195 cellulose synthase A 63.5 8.3 0.00018 39.0 3.8 45 110-154 7-59 (977)
135 KOG2113 Predicted RNA binding 62.8 7.4 0.00016 34.4 2.9 48 105-154 339-387 (394)
136 KOG4451 Uncharacterized conser 62.7 5.7 0.00012 33.5 2.1 29 131-159 251-279 (286)
137 KOG2231 Predicted E3 ubiquitin 61.6 6.8 0.00015 38.0 2.7 44 111-154 2-52 (669)
138 KOG0827 Predicted E3 ubiquitin 61.1 1.4 3E-05 39.9 -1.8 47 108-154 195-245 (465)
139 TIGR01562 FdhE formate dehydro 60.9 3.2 7E-05 36.5 0.4 44 109-152 184-233 (305)
140 PF01363 FYVE: FYVE zinc finge 60.8 2.9 6.4E-05 27.9 0.1 32 108-139 8-43 (69)
141 PF07191 zinc-ribbons_6: zinc- 59.9 0.96 2.1E-05 31.1 -2.4 43 110-157 2-44 (70)
142 KOG1609 Protein involved in mR 57.9 12 0.00025 32.2 3.4 46 109-154 78-134 (323)
143 PF06844 DUF1244: Protein of u 56.9 5.7 0.00012 26.9 1.0 12 130-141 11-22 (68)
144 KOG0802 E3 ubiquitin ligase [P 55.3 7.2 0.00016 36.9 1.8 45 107-155 477-521 (543)
145 PF13240 zinc_ribbon_2: zinc-r 55.1 3.1 6.6E-05 22.2 -0.4 13 140-152 10-22 (23)
146 PF07975 C1_4: TFIIH C1-like d 54.4 11 0.00024 24.2 2.0 27 124-150 24-50 (51)
147 TIGR00622 ssl1 transcription f 54.1 17 0.00036 27.3 3.2 41 110-150 56-110 (112)
148 PF04710 Pellino: Pellino; In 52.2 4.7 0.0001 36.6 0.0 47 109-155 328-402 (416)
149 PF10497 zf-4CXXC_R1: Zinc-fin 51.4 14 0.0003 27.3 2.4 24 128-151 37-69 (105)
150 smart00064 FYVE Protein presen 51.1 14 0.0003 24.4 2.2 31 109-139 10-44 (68)
151 PF13901 DUF4206: Domain of un 50.9 12 0.00026 30.8 2.2 37 109-150 152-196 (202)
152 KOG1829 Uncharacterized conser 47.9 6.4 0.00014 37.6 0.2 23 125-150 535-557 (580)
153 KOG0801 Predicted E3 ubiquitin 47.8 6.1 0.00013 31.7 0.0 27 107-133 175-204 (205)
154 COG5109 Uncharacterized conser 47.7 12 0.00027 33.1 1.8 42 109-150 336-383 (396)
155 PRK04023 DNA polymerase II lar 47.5 15 0.00034 37.3 2.7 44 109-154 626-674 (1121)
156 PF14446 Prok-RING_1: Prokaryo 47.4 19 0.00042 23.4 2.3 30 109-138 5-38 (54)
157 KOG0824 Predicted E3 ubiquitin 46.7 7.4 0.00016 34.1 0.4 49 108-156 104-153 (324)
158 PF04423 Rad50_zn_hook: Rad50 46.5 7.3 0.00016 24.9 0.2 11 144-154 21-31 (54)
159 cd00065 FYVE FYVE domain; Zinc 46.4 15 0.00033 23.2 1.7 30 110-139 3-36 (57)
160 PF04710 Pellino: Pellino; In 44.3 7.4 0.00016 35.4 0.0 31 123-156 305-341 (416)
161 KOG1356 Putative transcription 43.2 12 0.00025 37.2 1.1 47 107-153 227-281 (889)
162 smart00834 CxxC_CXXC_SSSS Puta 42.2 11 0.00025 22.1 0.6 14 142-155 25-38 (41)
163 PF06906 DUF1272: Protein of u 41.5 28 0.00061 22.8 2.4 26 127-154 25-52 (57)
164 KOG2789 Putative Zn-finger pro 39.8 19 0.00042 32.8 1.9 32 108-139 73-106 (482)
165 KOG2066 Vacuolar assembly/sort 39.8 8.5 0.00018 37.9 -0.4 41 108-149 783-830 (846)
166 smart00132 LIM Zinc-binding do 39.8 26 0.00056 19.7 1.9 34 112-153 2-37 (39)
167 PF01485 IBR: IBR domain; Int 39.2 5.2 0.00011 25.8 -1.4 18 124-141 43-60 (64)
168 COG3813 Uncharacterized protei 39.1 21 0.00045 24.7 1.6 25 128-154 28-52 (84)
169 COG4647 AcxC Acetone carboxyla 38.8 15 0.00032 28.4 0.9 23 112-134 60-82 (165)
170 PF14311 DUF4379: Domain of un 37.7 25 0.00055 22.4 1.8 23 126-149 33-55 (55)
171 TIGR02605 CxxC_CxxC_SSSS putat 36.0 29 0.00064 21.6 1.9 31 125-156 9-40 (52)
172 PF11023 DUF2614: Protein of u 36.0 14 0.00031 27.7 0.4 16 139-154 81-96 (114)
173 COG2835 Uncharacterized conser 35.2 9.6 0.00021 25.4 -0.6 11 145-155 10-20 (60)
174 PF06937 EURL: EURL protein; 33.6 24 0.00052 30.5 1.4 18 132-149 58-76 (285)
175 cd00350 rubredoxin_like Rubred 33.0 30 0.00065 19.7 1.4 11 142-152 16-26 (33)
176 KOG4185 Predicted E3 ubiquitin 32.7 7.9 0.00017 33.3 -1.7 43 110-152 208-265 (296)
177 KOG1815 Predicted E3 ubiquitin 32.4 20 0.00043 33.1 0.8 35 121-155 178-238 (444)
178 COG3492 Uncharacterized protei 31.6 21 0.00046 25.8 0.7 12 130-141 42-53 (104)
179 COG3058 FdhE Uncharacterized p 31.0 52 0.0011 28.7 3.0 86 107-198 183-277 (308)
180 PF05605 zf-Di19: Drought indu 30.1 32 0.0007 21.8 1.3 36 109-151 2-39 (54)
181 KOG2462 C2H2-type Zn-finger pr 29.1 32 0.0007 29.8 1.5 48 107-154 159-226 (279)
182 PF09297 zf-NADH-PPase: NADH p 29.1 14 0.00031 20.9 -0.5 23 129-151 3-29 (32)
183 PRK11595 DNA utilization prote 28.0 60 0.0013 26.9 2.9 38 111-153 7-44 (227)
184 PF06676 DUF1178: Protein of u 27.9 23 0.0005 27.9 0.4 22 127-153 10-42 (148)
185 PF14169 YdjO: Cold-inducible 26.9 40 0.00087 22.3 1.3 14 141-154 37-50 (59)
186 KOG2807 RNA polymerase II tran 24.2 59 0.0013 29.1 2.2 41 110-150 331-374 (378)
187 PF10083 DUF2321: Uncharacteri 24.1 36 0.00078 27.1 0.8 25 127-154 26-50 (158)
188 PRK11827 hypothetical protein; 21.8 20 0.00043 23.9 -0.9 13 143-155 8-20 (60)
189 PF13832 zf-HC5HC2H_2: PHD-zin 21.7 92 0.002 22.4 2.6 31 109-139 55-88 (110)
190 PLN00131 hypothetical protein; 21.5 59 0.0013 26.0 1.5 17 6-22 56-72 (218)
191 KOG2979 Protein involved in DN 21.3 52 0.0011 28.3 1.3 43 110-152 177-222 (262)
192 PF08882 Acetone_carb_G: Aceto 21.2 49 0.0011 24.8 1.0 19 114-133 17-35 (112)
193 cd03036 ArsC_like Arsenate Red 20.6 27 0.00058 25.6 -0.5 40 143-186 6-46 (111)
194 PF10764 Gin: Inhibitor of sig 20.6 58 0.0013 20.3 1.1 28 111-139 1-28 (46)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.1e-17 Score=142.74 Aligned_cols=201 Identities=24% Similarity=0.367 Sum_probs=143.1
Q ss_pred Ccccccch-hHHHHHHHHHhhhccccccccccceeeEEEEEee-eCCCCccCcccc--chhhhhHhhhhhHH--------
Q 028459 1 MKLVYDHW-APLFWFLLQWVNSSCMCVLPRYLNFFHILVYKVS-ADDRPSLTSPGR--KATIREFYGVILPS-------- 68 (208)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~lgl~~iliy~~~-~~g~~~~s~~~r--~~si~~~y~~i~p~-------- 68 (208)
||+++++. ..+..++++|+++. -+. .|...+++|... .++..+++...+ ..+.+++++..+++
T Consensus 25 cr~~h~~~~~~~~~~~~~~~s~~----~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~~~~~~s~~~~~~~~ 99 (344)
T KOG1039|consen 25 CRLSHSLPDEEFATLLTPTTSSA----AAS-TGLSQSLIWANAVADASATMSVSSRPVLTAIRASSSISEPSSTQENPYS 99 (344)
T ss_pred eeeeccCchhhcccccccccccc----ccc-cccchhhcccchhhccccccchhcccchhhhhhhhccccccccccCccc
Confidence 78999988 88888999999988 555 788899999987 888888887776 66777888776665
Q ss_pred -HHHHHhhhhH------------------HHHHHHHh-hhhcc-CCccccCCCCCCCCCCCCCcCcccccCCCC------
Q 028459 69 -LQRLHSNLRE------------------LDDAKIEN-LEIGS-FDRMRGDSQVGSADLEREDECGICLEPCTK------ 121 (208)
Q Consensus 69 -L~~l~~~i~~------------------~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~C~ICle~~~~------ 121 (208)
+.+...+... +..++... .+... .....+-+.........+.+|+|||+....
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s~~k~CGICme~i~ek~~~~~ 179 (344)
T KOG1039|consen 100 NHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKSSEKECGICMETINEKAASER 179 (344)
T ss_pred cccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCccccccceehhhhccccchhhh
Confidence 2111111111 11111111 11110 001111111112223557899999987653
Q ss_pred --ceecCCCCcccHhhHHHHc--CC-----CCCCCCCCcCcccccCCCceeecCCCCccCCcccchHHHHHHHHHHhhCC
Q 028459 122 --MVLPNCCHAMCIKCYRNWN--TK-----SESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKEDLLRFYLYINSLP 192 (208)
Q Consensus 122 --~vl~~C~H~Fc~~Ci~~w~--~~-----~~~CP~CR~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~l~R~~~~i~~lp 192 (208)
+++|+|.|.||.+||+.|. .+ ++.||.||.+..+++++..|+.+...+..+.++..++...+..-|+.+.+
T Consensus 180 rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~ 259 (344)
T KOG1039|consen 180 RFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKLIEEYEAEMSAKDCKYFSQGL 259 (344)
T ss_pred hcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecccccccHHHHHHHhhccchhhhcCCC
Confidence 4569999999999999996 44 57999999999999999999999998888888888888889999999999
Q ss_pred CCCchhHHHHhhhh
Q 028459 193 KDYPDALFVVYYEY 206 (208)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (208)
..-|..-.-.|+++
T Consensus 260 g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 260 GSCPFGSKCFYKHL 273 (344)
T ss_pred CCCCCCCccccccc
Confidence 98888666555544
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.37 E-value=3.2e-13 Score=113.58 Aligned_cols=56 Identities=32% Similarity=0.894 Sum_probs=47.5
Q ss_pred CCCCcCcccccCCCC--------ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcccccCCCce
Q 028459 107 EREDECGICLEPCTK--------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLW 162 (208)
Q Consensus 107 ~~~~~C~ICle~~~~--------~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~ 162 (208)
..+.+|+||++.+.. +++++|||.||..||.+|+..+.+||+||.++..+.++..|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 346799999997653 36788999999999999999999999999999877766554
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=99.28 E-value=1.7e-12 Score=106.85 Aligned_cols=57 Identities=33% Similarity=0.887 Sum_probs=46.3
Q ss_pred CCCCcCcccccCCC---------CceecCCCCcccHhhHHHHcCC------CCCCCCCCcCcccccCCCcee
Q 028459 107 EREDECGICLEPCT---------KMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKRVNSEDLWV 163 (208)
Q Consensus 107 ~~~~~C~ICle~~~---------~~vl~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~~~~~~~~~~~~ 163 (208)
+.+.+|+||+|... .+++++|+|.||..||.+|... ..+||+||..+..+.++.++.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~~ 239 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFYK 239 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccccee
Confidence 45689999998742 3688899999999999999753 246999999999888876653
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.27 E-value=6.5e-13 Score=83.45 Aligned_cols=41 Identities=44% Similarity=1.009 Sum_probs=34.2
Q ss_pred CcCcccccCCC---CceecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 110 DECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 110 ~~C~ICle~~~---~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
++|+||++.+. ..+.++|||.||.+|+.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999998874 346667999999999999998889999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.27 E-value=4.7e-12 Score=102.85 Aligned_cols=52 Identities=27% Similarity=0.791 Sum_probs=43.7
Q ss_pred CCCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC----------------CCCCCCCCCcCccc
Q 028459 104 ADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----------------KSESCPFCRGSMKR 155 (208)
Q Consensus 104 ~~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~----------------~~~~CP~CR~~~~~ 155 (208)
.+..++.+|+||++.+.+++.++|||.||..||.+|+. ....||.||.++..
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 33456789999999999999999999999999999953 23489999998863
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.6e-12 Score=107.16 Aligned_cols=48 Identities=29% Similarity=0.848 Sum_probs=44.3
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+....|.+|+|....+..++|||.||.+||..|......||+||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 455789999999999999999999999999999999999999998885
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.23 E-value=3.2e-12 Score=82.46 Aligned_cols=47 Identities=32% Similarity=0.834 Sum_probs=41.3
Q ss_pred CCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+..|.||++...+.++.+|||. ||..|+.+|...+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4689999999999988899999 9999999999999999999998864
No 8
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.14 E-value=2.7e-11 Score=84.39 Aligned_cols=42 Identities=36% Similarity=1.013 Sum_probs=34.5
Q ss_pred CCcCcccccCCCC-------------ceecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 109 EDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 109 ~~~C~ICle~~~~-------------~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
++.|+||++.+.+ ....+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3459999988731 35567999999999999999999999998
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.4e-11 Score=98.96 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=43.5
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC---CCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~---~~~~CP~CR~~~~ 154 (208)
.....+|.||+|..+++|++.|||.||..||.+|+. .++.||+||..+.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456689999999999999999999999999999965 4568999998886
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.12 E-value=3.7e-11 Score=74.87 Aligned_cols=38 Identities=34% Similarity=0.766 Sum_probs=29.5
Q ss_pred CcccccCCCCceecCCCCcccHhhHHHHcCCC----CCCCCC
Q 028459 112 CGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFC 149 (208)
Q Consensus 112 C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~----~~CP~C 149 (208)
|+||++.+.+++.++|||+||.+||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999985432 379987
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.11 E-value=2.5e-11 Score=74.29 Aligned_cols=38 Identities=34% Similarity=0.952 Sum_probs=33.2
Q ss_pred CcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCC
Q 028459 112 CGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFC 149 (208)
Q Consensus 112 C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~C 149 (208)
|+||++.+.++ +.++|||.||.+|+.+|++.+.+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999988 678899999999999998878899998
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-10 Score=101.01 Aligned_cols=50 Identities=24% Similarity=0.721 Sum_probs=41.1
Q ss_pred CCCCCcCcccccC-CCC------------ceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEP-CTK------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~-~~~------------~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
...+..|.||||. +.. |...+|||.+|.+|++.|.+++++||+||.++-+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3466799999977 322 3556699999999999999999999999999643
No 13
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.4e-10 Score=98.87 Aligned_cols=46 Identities=33% Similarity=0.858 Sum_probs=38.4
Q ss_pred CcCcccccCCCCc---eecCCCCcccHhhHHHHcCCC-CCCCCCCcCccc
Q 028459 110 DECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMKR 155 (208)
Q Consensus 110 ~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~~~~ 155 (208)
..|+||+|.+..+ ..+||+|.||..||++|+.+. ..||+||..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5999999998853 445699999999999998765 569999987753
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-10 Score=91.14 Aligned_cols=47 Identities=28% Similarity=0.772 Sum_probs=41.1
Q ss_pred CCCcCcccccCCCCc--eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKM--VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~--vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
....|+|||+.+.+. +-++|||.||..||..-+....+||+|++.++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 346899999998764 56899999999999999999999999998665
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.96 E-value=4.5e-10 Score=69.25 Aligned_cols=43 Identities=40% Similarity=0.997 Sum_probs=35.7
Q ss_pred cCcccccCCCCc-eecCCCCcccHhhHHHHcCC-CCCCCCCCcCc
Q 028459 111 ECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTK-SESCPFCRGSM 153 (208)
Q Consensus 111 ~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~ 153 (208)
+|+||++.+..+ ..++|||.||..|+.+|... +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999988544 55569999999999999876 77899998753
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.93 E-value=8.4e-10 Score=73.94 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=41.5
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+||.+.+.+++..+|||+||..||.+|...+..||.|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 479999999999999999999999999999877889999998874
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.92 E-value=5.2e-10 Score=68.87 Aligned_cols=38 Identities=47% Similarity=1.137 Sum_probs=34.2
Q ss_pred CcccccCCCCce-ecCCCCcccHhhHHHHcC--CCCCCCCC
Q 028459 112 CGICLEPCTKMV-LPNCCHAMCIKCYRNWNT--KSESCPFC 149 (208)
Q Consensus 112 C~ICle~~~~~v-l~~C~H~Fc~~Ci~~w~~--~~~~CP~C 149 (208)
|+||++.+..+. +++|||.||..|+.+|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999887 889999999999999966 66789998
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.4e-09 Score=77.31 Aligned_cols=47 Identities=34% Similarity=0.897 Sum_probs=37.2
Q ss_pred CCCcCcccccCCCC-------------ceecCCCCcccHhhHHHHcCC---CCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNTK---SESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------------~vl~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~~~ 154 (208)
+++.|+||...|.. .+...|+|.||..||.+|+.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 36789999866651 255679999999999999764 468999999875
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.86 E-value=2.2e-09 Score=67.37 Aligned_cols=41 Identities=39% Similarity=0.960 Sum_probs=35.5
Q ss_pred cCcccccCCC---CceecCCCCcccHhhHHHHcCCCCCCCCCCc
Q 028459 111 ECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 111 ~C~ICle~~~---~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
+|+||.+.+. .+.+++|||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999998872 4688889999999999999877789999984
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=1.5e-09 Score=97.41 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=45.3
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
..+....|+||++.+..+++++|||.||..||..|+.....||.||.++..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345668999999999999999999999999999998887899999998753
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.6e-09 Score=92.94 Aligned_cols=46 Identities=30% Similarity=0.731 Sum_probs=39.1
Q ss_pred CCcCcccccCCCCc---eecCCCCcccHhhHHHHcC-CCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~ 154 (208)
.-+|+|||+.+.+. +.+||.|.||..|+.+|+. .+..||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 36899999998752 4456999999999999965 7889999999885
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.79 E-value=4.1e-09 Score=62.66 Aligned_cols=38 Identities=39% Similarity=1.047 Sum_probs=33.7
Q ss_pred CcccccCCCCceecCCCCcccHhhHHHHcC-CCCCCCCC
Q 028459 112 CGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFC 149 (208)
Q Consensus 112 C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~-~~~~CP~C 149 (208)
|+||++.....+.++|||.||..|+.+|.. .+..||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988888888999999999999977 66689987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.9e-09 Score=95.38 Aligned_cols=47 Identities=36% Similarity=0.791 Sum_probs=40.6
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcC-----CCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-----KSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~-----~~~~CP~CR~~~~~ 155 (208)
+..||||++....++.+.|||+||..||.+.+. ....||+||..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 678999999999999999999999999987643 23589999998874
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.4e-09 Score=86.97 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=41.9
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHH-HcCCCC-CCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRN-WNTKSE-SCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~-w~~~~~-~CP~CR~~~~ 154 (208)
..+..|+||++....+..++|||.||..||.. |..++. .||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 45788999999999999999999999999998 966555 5999998765
No 25
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.1e-09 Score=67.81 Aligned_cols=49 Identities=39% Similarity=0.740 Sum_probs=41.4
Q ss_pred CCCcCcccccCCCCceecCCCCc-ccHhhHH-HHcCCCCCCCCCCcCcccc
Q 028459 108 REDECGICLEPCTKMVLPNCCHA-MCIKCYR-NWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~-~w~~~~~~CP~CR~~~~~~ 156 (208)
.+.+|.||+|...+.++..|||. +|..|-. .|...+..||+||++++.+
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 34799999999999999889994 8999964 5666788999999998743
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.64 E-value=8.1e-09 Score=89.79 Aligned_cols=48 Identities=27% Similarity=0.698 Sum_probs=44.2
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+.-..|.||.|.|..+++++|||.||.-||+..+..+..||.|+.++.
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 344689999999999999999999999999999999999999998876
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-08 Score=87.22 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=44.8
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
..-..|-||-+.+..++.++|||.||.-||+..+..+..||.||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 4456899999999999999999999999999999999999999988763
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.2e-08 Score=93.86 Aligned_cols=48 Identities=29% Similarity=0.668 Sum_probs=41.3
Q ss_pred CCCCCcCcccccCCCC-----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 106 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~-----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
...+..|+||+|.... +...+|||.||..|+..|+++.++||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3457899999998776 56666999999999999999999999999843
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1.1e-07 Score=82.58 Aligned_cols=89 Identities=28% Similarity=0.560 Sum_probs=52.5
Q ss_pred CCcCcccccC--CCCc---eecCCCCcccHhhHHH-HcCCCCCCCCCCcCcccccCCCceeecCCCCccCCcccchH-HH
Q 028459 109 EDECGICLEP--CTKM---VLPNCCHAMCIKCYRN-WNTKSESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKE-DL 181 (208)
Q Consensus 109 ~~~C~ICle~--~~~~---vl~~C~H~Fc~~Ci~~-w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~d~~~~~~e-~l 181 (208)
+..||+|... .... ...+|||.||.+|+.. |...+..||.|+.++...+.... +.+-..+.+| ++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q--------~F~D~~vekEV~i 74 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ--------LFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc--------ccccHHHHHHHHH
Confidence 3579999964 2221 2226999999999998 55666799999998875432211 1111223333 23
Q ss_pred -HHHHHHHhhCCCCCchhHHHHhhhhc
Q 028459 182 -LRFYLYINSLPKDYPDALFVVYYEYL 207 (208)
Q Consensus 182 -~R~~~~i~~lp~~~~~~~~~~~~~~~ 207 (208)
+|+..-.|+--...+ .+ .-|.+||
T Consensus 75 Rkrv~~i~Nk~e~dF~-~l-~~yNdYL 99 (309)
T TIGR00570 75 RKRVLKIYNKREEDFP-SL-REYNDYL 99 (309)
T ss_pred HHHHHHHHccchhccC-CH-HHHHHHH
Confidence 444444455555555 22 3477776
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.49 E-value=3.9e-08 Score=61.47 Aligned_cols=35 Identities=31% Similarity=0.809 Sum_probs=20.5
Q ss_pred CcccccCCCC----ceecCCCCcccHhhHHHHcCC----CCCCC
Q 028459 112 CGICLEPCTK----MVLPNCCHAMCIKCYRNWNTK----SESCP 147 (208)
Q Consensus 112 C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~----~~~CP 147 (208)
|+||.| +.. ++.++|||+||.+|+.++..+ .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 665 666669999999999999653 33676
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.45 E-value=1.1e-07 Score=66.03 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
+...|+|+.+.+.++++.++||+|+..||.+|+.. ...||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 35689999999999999999999999999999887 889999998885
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.3e-07 Score=77.87 Aligned_cols=46 Identities=39% Similarity=0.725 Sum_probs=40.1
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
..+...|+||++.+..+.+.+|||.||..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3456799999999999888889999999999988766679999993
No 33
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.32 E-value=1.9e-07 Score=85.52 Aligned_cols=102 Identities=19% Similarity=0.473 Sum_probs=73.2
Q ss_pred eeeCCCCccCccccchhhhhHhhhhhHHHHHHHhhhhHHHHHHHHhhhhccCCccccCCCCCCCCCCCCCcCcccccCCC
Q 028459 41 VSADDRPSLTSPGRKATIREFYGVILPSLQRLHSNLRELDDAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCT 120 (208)
Q Consensus 41 ~~~~g~~~~s~~~r~~si~~~y~~i~p~L~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~ 120 (208)
+|.|.+..+.++...+.+..+|+.||..+.|++ +..+.. . ...+..+... ..+...+.+|.+|.++-+
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmR-Q~aDHP----~-LVl~S~~~n~------~~enk~~~~C~lc~d~ae 547 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMR-QAADHP----D-LVLYSANANL------PDENKGEVECGLCHDPAE 547 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHH-HhccCc----c-eeeehhhcCC------CccccCceeecccCChhh
Confidence 477888999999999999999999999988775 211110 0 1111111111 222344568999999999
Q ss_pred CceecCCCCcccHhhHHHHc-----CCCCCCCCCCcCcc
Q 028459 121 KMVLPNCCHAMCIKCYRNWN-----TKSESCPFCRGSMK 154 (208)
Q Consensus 121 ~~vl~~C~H~Fc~~Ci~~w~-----~~~~~CP~CR~~~~ 154 (208)
+.+.+.|.|.||.-|+.++. ..+-+||.|-..+.
T Consensus 548 d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 548 DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 99999999999999998873 23469999987664
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=8e-07 Score=75.35 Aligned_cols=47 Identities=23% Similarity=0.727 Sum_probs=37.4
Q ss_pred CCCcCcccccCCC----------CceecCCCCcccHhhHHHH--cCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCT----------KMVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~----------~~vl~~C~H~Fc~~Ci~~w--~~~~~~CP~CR~~~~ 154 (208)
++..|+||-..+. +.....|+|+||..||+.| .++.++||.|+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4468999974332 3455679999999999999 678899999998775
No 35
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.26 E-value=3.4e-07 Score=61.52 Aligned_cols=43 Identities=30% Similarity=0.736 Sum_probs=24.0
Q ss_pred CCcCcccccCCCCce-ecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 109 EDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 109 ~~~C~ICle~~~~~v-l~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
-..|++|.+.+..++ +.+|.|.||..||.+-.+ ..||+|+.|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 357999999999886 578999999999988655 3599998766
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.24 E-value=5.9e-07 Score=62.68 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=27.8
Q ss_pred ecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 124 LPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 124 l~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
-.-|.|.||..||.+|+..+..||++|++..
T Consensus 51 wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 51 WGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 3459999999999999999999999998765
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.2e-06 Score=75.33 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=43.3
Q ss_pred CCCCcCcccccCCCCceecCCCC-cccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H-~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++..+|.||+....+.++.||.| ..|..|.+...-+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 45679999999999988888999 58999999988888899999999963
No 38
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.5e-06 Score=78.99 Aligned_cols=49 Identities=29% Similarity=0.772 Sum_probs=38.7
Q ss_pred CCCCcCcccccCCC-----------------CceecCCCCcccHhhHHHHcC-CCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCT-----------------KMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~-----------------~~vl~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~~ 155 (208)
+....|+|||.+.. +-.++||.|.||..|+.+|.. .+-.||.||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45578999996543 124567999999999999988 55599999998863
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.05 E-value=1.7e-06 Score=77.03 Aligned_cols=49 Identities=31% Similarity=0.890 Sum_probs=41.7
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcC--CCCCCCCCCcCcccccC
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSMKRVNS 158 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~~~~~~~ 158 (208)
.-|.||-|...+...-+|||..|..|+..|.. .+++||+||..++...+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 46999999988887777999999999999963 36899999999985443
No 40
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9.9e-07 Score=61.06 Aligned_cols=46 Identities=33% Similarity=0.870 Sum_probs=34.4
Q ss_pred CCcCcccccCCCC-------------ceecCCCCcccHhhHHHHcC---CCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTK-------------MVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~-------------~vl~~C~H~Fc~~Ci~~w~~---~~~~CP~CR~~~~ 154 (208)
++.|+||.-.|.. .+..-|.|.||..||.+|+. .+..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999866541 23445999999999999964 3458999998765
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.5e-06 Score=82.61 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=40.9
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHc-CCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~~~ 154 (208)
.-..|+.|-....+.+++.|||.||..|+.... .+..+||.|.++|.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 346799999999999999999999999998875 46779999998885
No 42
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.8e-06 Score=76.56 Aligned_cols=53 Identities=25% Similarity=0.688 Sum_probs=46.8
Q ss_pred CCCCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 103 SADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 103 ~~~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+.....+.+|.||+..+.+++.++|||.||..|+.+-+.+...||.||.++..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 33446778999999999999999999999999999988888999999998874
No 43
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.95 E-value=4.1e-06 Score=81.17 Aligned_cols=50 Identities=22% Similarity=0.669 Sum_probs=38.0
Q ss_pred CCCCCcCcccccCC-------CCceecCCCCcccHhhHHHHcC--CCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPC-------TKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~-------~~~vl~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~~~~ 155 (208)
.+..++|+||.... .....+.|.|.||..|+-+|.. .++.||+||..+++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 34567999998432 2234556999999999999954 56799999988864
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.7e-06 Score=70.44 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=39.4
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcC-CCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~~ 155 (208)
..+|+||+....-++.+.|+|.||.-||..-.. ....|++||.++..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 458999999988888888999999999986533 44579999999973
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.77 E-value=2.8e-06 Score=58.61 Aligned_cols=46 Identities=35% Similarity=0.864 Sum_probs=22.4
Q ss_pred CCcCcccccCCC-C-----cee--cCCCCcccHhhHHHHcC---CC--------CCCCCCCcCcc
Q 028459 109 EDECGICLEPCT-K-----MVL--PNCCHAMCIKCYRNWNT---KS--------ESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~-~-----~vl--~~C~H~Fc~~Ci~~w~~---~~--------~~CP~CR~~~~ 154 (208)
+.+|+||++... . .+- ..|++.||..|+.+|+. .+ ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999997643 2 233 36999999999999943 11 16999999885
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4e-06 Score=73.53 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=39.0
Q ss_pred CCCCcCcccccCCCCc-eecCCCCcccHhhHHHH-cCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKM-VLPNCCHAMCIKCYRNW-NTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w-~~~~~~CP~CR~~~~ 154 (208)
..+..|+||++..... ....|+|.||.+||..- ....+.||.||+.+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4456899999998865 44579999999999765 556789999998875
No 47
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5.6e-06 Score=60.57 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=26.6
Q ss_pred ecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 124 LPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 124 l~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
-..|.|.||..||.+|++..+.||+|.++-
T Consensus 78 WG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 345999999999999999999999997654
No 48
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.73 E-value=1.5e-05 Score=65.00 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=41.1
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
-...|.||-+.+..++.++|||.||..|...-.+....|-.|-+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 34689999999999999999999999999887778889999976554
No 49
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.68 E-value=2.7e-05 Score=70.46 Aligned_cols=49 Identities=27% Similarity=0.667 Sum_probs=43.9
Q ss_pred CCCCCcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.+.+..|++|+....+++.+ .|||.||..|+..|...++.||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45668899999999999884 89999999999999988999999988775
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.66 E-value=2.6e-05 Score=70.40 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=36.7
Q ss_pred CCCCCcCcccccCCCC---c-eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTK---M-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~---~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..+-.+||+|+|.+.. + +...|.|.||..|+..|.. .+||+||-...
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 3455789999987653 3 3446999999999999976 58999996554
No 51
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.64 E-value=3.3e-05 Score=49.51 Aligned_cols=40 Identities=20% Similarity=0.672 Sum_probs=29.8
Q ss_pred cCccccc--CCCCceecCCC-----CcccHhhHHHHcC--CCCCCCCCC
Q 028459 111 ECGICLE--PCTKMVLPNCC-----HAMCIKCYRNWNT--KSESCPFCR 150 (208)
Q Consensus 111 ~C~ICle--~~~~~vl~~C~-----H~Fc~~Ci~~w~~--~~~~CP~CR 150 (208)
.|.||++ ....+...||. |.+|.+|+.+|+. .+.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 22344555684 8899999999974 445899995
No 52
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00023 Score=60.70 Aligned_cols=56 Identities=29% Similarity=0.610 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCcCcccccCCCCc-eecCCCCcccHhhHHHHc--CCCCCCCCCCcCccc
Q 028459 100 QVGSADLEREDECGICLEPCTKM-VLPNCCHAMCIKCYRNWN--TKSESCPFCRGSMKR 155 (208)
Q Consensus 100 ~~~~~~~~~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~~~~~ 155 (208)
+.+......+.+|++|-+....| +..+|||.||.-|+..-. ..+.+||.|-.+...
T Consensus 230 ~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 230 KFSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CcccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 34445556778999999998876 445699999999998753 345799999877753
No 53
>PHA03096 p28-like protein; Provisional
Probab=97.57 E-value=1.3e-05 Score=69.40 Aligned_cols=57 Identities=26% Similarity=0.468 Sum_probs=39.9
Q ss_pred CcCcccccCCC--------CceecCCCCcccHhhHHHHcCC---CCCCCCC---CcCcccc----------cCCCceeec
Q 028459 110 DECGICLEPCT--------KMVLPNCCHAMCIKCYRNWNTK---SESCPFC---RGSMKRV----------NSEDLWVLT 165 (208)
Q Consensus 110 ~~C~ICle~~~--------~~vl~~C~H~Fc~~Ci~~w~~~---~~~CP~C---R~~~~~~----------~~~~~~~~~ 165 (208)
.+|+||+|... .+.+++|.|.||..|+..|... ..+||.| +..+..+ .|+..|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~ 258 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDD 258 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHHhhcchhhhccCCchhhhcC
Confidence 57999997643 3688999999999999999543 2345555 4444444 677776665
Q ss_pred C
Q 028459 166 C 166 (208)
Q Consensus 166 ~ 166 (208)
.
T Consensus 259 ~ 259 (284)
T PHA03096 259 K 259 (284)
T ss_pred h
Confidence 3
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=6.1e-05 Score=64.80 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=41.7
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.+.|.||...+..+|.+.|||.||..|...-.+.+..|++|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 3569999999999999999999999999888888899999987765
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0002 Score=63.10 Aligned_cols=49 Identities=22% Similarity=0.615 Sum_probs=43.9
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.++..|+||.......+..||+|.-|..||.+.+.+.+.|-+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4667899999888888888899999999999999999999999987753
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.33 E-value=0.00016 Score=47.78 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCcCcccccCCCCceec-CCCCcccHhhHHHHcC--CCCCCCC
Q 028459 108 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNT--KSESCPF 148 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~--~~~~CP~ 148 (208)
....|||.+..+.+|+.. .|||.|..+.|.+|++ ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346899999999999774 8999999999999984 3458998
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00012 Score=65.08 Aligned_cols=44 Identities=27% Similarity=0.748 Sum_probs=31.0
Q ss_pred CcCcccccCCCC----ceecCCCCcccHhhHHHHcCC--C-CCCCCCCcCc
Q 028459 110 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTK--S-ESCPFCRGSM 153 (208)
Q Consensus 110 ~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~--~-~~CP~CR~~~ 153 (208)
..|.||.+-+.. +....|||+||..|+.+|... + ..||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 479999543321 222339999999999999764 3 4899999333
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.12 E-value=0.00012 Score=70.17 Aligned_cols=50 Identities=26% Similarity=0.715 Sum_probs=37.4
Q ss_pred CcCcccccCCCCc---eecCCCCcccHhhHHHHcCCCCCCCCCCcCcccccCC
Q 028459 110 DECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 110 ~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
..|++|+..+.+. ...+|+|.||..|+..|....++||+||..+..+.+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 3566666443322 2235999999999999999999999999998866553
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.09 E-value=0.00011 Score=64.16 Aligned_cols=50 Identities=20% Similarity=0.560 Sum_probs=42.0
Q ss_pred CCCCcCcccccCCCCce-ecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 107 EREDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~v-l~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
.....|.+|-..+.++. .+.|-|.||.+||.+.+.....||.|...+...
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34468999999999864 457999999999999988899999998877644
No 60
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00039 Score=62.28 Aligned_cols=45 Identities=33% Similarity=0.826 Sum_probs=35.7
Q ss_pred CCcCcccccCCCC-----ceecCCCCcccHhhHHHHcCC--CCCCCCCCcCc
Q 028459 109 EDECGICLEPCTK-----MVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSM 153 (208)
Q Consensus 109 ~~~C~ICle~~~~-----~vl~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~~ 153 (208)
...|+||++.... .+.+.|||.|-.+||++|+.+ ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 4689999987653 366789999999999999853 24899997544
No 61
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00014 Score=62.58 Aligned_cols=43 Identities=33% Similarity=0.839 Sum_probs=35.6
Q ss_pred CCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+.-|.|||+...+-+.++|||. -|.+|-.. .+.||+||+.+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence 6789999999999999999994 68888533 4599999987754
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.60 E-value=0.0019 Score=41.15 Aligned_cols=42 Identities=29% Similarity=0.741 Sum_probs=21.3
Q ss_pred CcccccCCCC---ceec-CCCCcccHhhHHHHcC-CCCCCCCCCcCc
Q 028459 112 CGICLEPCTK---MVLP-NCCHAMCIKCYRNWNT-KSESCPFCRGSM 153 (208)
Q Consensus 112 C~ICle~~~~---~vl~-~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~ 153 (208)
|++|.+.+.. ...| +||+..|..|..+-.. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889887642 2333 5899999999998876 577999999864
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.58 E-value=0.002 Score=56.83 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=42.8
Q ss_pred CCCCCCCCcCcccccCCCCceecCCCCcccHhhHHHH--cCCCCCCCCCCcCccc
Q 028459 103 SADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW--NTKSESCPFCRGSMKR 155 (208)
Q Consensus 103 ~~~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w--~~~~~~CP~CR~~~~~ 155 (208)
++.++++..|.||-+...-..++||+|..|--|..+. +...+.||+||..-..
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 3344566789999999888778889999999998665 6778899999987653
No 64
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.57 E-value=0.00044 Score=66.52 Aligned_cols=108 Identities=20% Similarity=0.412 Sum_probs=59.9
Q ss_pred CCCCccCccccchhhhhHhhhhhHHHHHHHhhhhHHH--HHHHHhhhhccCCccccCCCCCCCCCCCCCcCcccccCCCC
Q 028459 44 DDRPSLTSPGRKATIREFYGVILPSLQRLHSNLRELD--DAKIENLEIGSFDRMRGDSQVGSADLEREDECGICLEPCTK 121 (208)
Q Consensus 44 ~g~~~~s~~~r~~si~~~y~~i~p~L~~l~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~ 121 (208)
+++..++.+...+++...|+.++-.+.++...-.+.. ..+....+-.........+ .-.+......|.||++ ...
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~c~ic~~-~~~ 465 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIR--LIVDLSVSHWCHICCD-LDS 465 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHH--HHHHHhhccccccccc-ccc
Confidence 3444555566667778888888888777641111111 0000000000000000000 0000111178999999 666
Q ss_pred ceecCCCCcccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 122 MVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 122 ~vl~~C~H~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
.+.+.|||.||.+|+.+-.. ....||.||..+.
T Consensus 466 ~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 466 FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred ceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 77888999999999987643 3347999998776
No 65
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.56 E-value=0.0017 Score=42.36 Aligned_cols=44 Identities=27% Similarity=0.672 Sum_probs=34.0
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
..|-.|...-...++.+|||..|..|..- .+-+.||+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 46777777767777777999999999554 445789999988753
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.002 Score=57.00 Aligned_cols=47 Identities=30% Similarity=0.699 Sum_probs=35.0
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
......|.||.+...+.+..+|||.-| |..-- ++-.+||+||..+..
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 345578999999999888888999865 65432 233459999988864
No 67
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.36 E-value=0.001 Score=67.57 Aligned_cols=69 Identities=28% Similarity=0.683 Sum_probs=45.7
Q ss_pred CCCCCcCcccccC-CC--CceecCCCCcccHhhHHH-----HcCCC-----CCCCCCCcCcccccCCCceeecCCCCccC
Q 028459 106 LEREDECGICLEP-CT--KMVLPNCCHAMCIKCYRN-----WNTKS-----ESCPFCRGSMKRVNSEDLWVLTCTDDVID 172 (208)
Q Consensus 106 ~~~~~~C~ICle~-~~--~~vl~~C~H~Fc~~Ci~~-----w~~~~-----~~CP~CR~~~~~~~~~~~~~~~~~~~~~d 172 (208)
.+.++.|-||+.. .. +.+...|+|.||..|.+. |++.. -+||+|+.++.... -.|++|
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~---------LkDLld 3553 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV---------LKDLLD 3553 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH---------HHHHHH
Confidence 3456789999843 33 357788999999999754 54433 38999999887432 234566
Q ss_pred CcccchHHHHH
Q 028459 173 PETVSKEDLLR 183 (208)
Q Consensus 173 ~~~~~~e~l~R 183 (208)
+...-.|+++|
T Consensus 3554 PiKel~edV~~ 3564 (3738)
T KOG1428|consen 3554 PIKELYEDVRR 3564 (3738)
T ss_pred HHHHHHHHHHH
Confidence 55444555443
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0018 Score=54.37 Aligned_cols=44 Identities=25% Similarity=0.787 Sum_probs=31.0
Q ss_pred cCcccccCCC--CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 111 ECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 111 ~C~ICle~~~--~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
.|.-|.--.. .-.++.|+|+||..|...- ....||+||+++..+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 4776763332 2367889999999997652 223999999998643
No 69
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.21 E-value=0.0039 Score=45.50 Aligned_cols=33 Identities=21% Similarity=0.592 Sum_probs=25.2
Q ss_pred CCCCCCcCcccccCCCCc--eecCCCCcccHhhHH
Q 028459 105 DLEREDECGICLEPCTKM--VLPNCCHAMCIKCYR 137 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~--vl~~C~H~Fc~~Ci~ 137 (208)
....+..|++|-..+... +..||||.||..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345567899999877643 445799999999975
No 70
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.02 E-value=0.0042 Score=54.34 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=37.2
Q ss_pred CCCCcCcccccCCCCceecCC--CCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNC--CHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C--~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.+-.+||||.+....++.. | ||.-|.+|-.+ .++.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 4457899999999998776 7 89999999753 5679999999886
No 71
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.89 E-value=0.011 Score=46.93 Aligned_cols=47 Identities=23% Similarity=0.631 Sum_probs=34.0
Q ss_pred CCCCcCcccccCCCCceecCCC--C---cccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCC--H---AMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~--H---~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
..+..|-||.+...... .||. . .-|.+|+++|.. +..+|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVT-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCcc-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34568999997754333 3454 3 359999999964 4568999998875
No 72
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.71 E-value=0.0072 Score=47.82 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=23.1
Q ss_pred CCcCcccccCCCCceecCC------------CCc-ccHhhHHHH
Q 028459 109 EDECGICLEPCTKMVLPNC------------CHA-MCIKCYRNW 139 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C------------~H~-Fc~~Ci~~w 139 (208)
+..|+||||..-+.|++-| +.. -|..|+++.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqf 45 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQF 45 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHH
Confidence 4689999999888777655 222 378899887
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0078 Score=52.12 Aligned_cols=44 Identities=34% Similarity=0.763 Sum_probs=35.0
Q ss_pred CcCcccccCCCC------ceecCCCCcccHhhHHHHcCCC-CCCCCCCcCc
Q 028459 110 DECGICLEPCTK------MVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSM 153 (208)
Q Consensus 110 ~~C~ICle~~~~------~vl~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~~ 153 (208)
.+|.||-+++.. |..+.|||.+|..|+.+....+ ..||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 479999877662 4455599999999999987654 5899999875
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.01 Score=53.54 Aligned_cols=43 Identities=26% Similarity=0.609 Sum_probs=31.9
Q ss_pred CCcCcccccCCCC---ceecCCCCcccHhhHHHHcC--------CCCCCCCCCc
Q 028459 109 EDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT--------KSESCPFCRG 151 (208)
Q Consensus 109 ~~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~--------~~~~CP~CR~ 151 (208)
...|.||++.... .+.++|+|.||.+|...+.. +.-.||-+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3689999987654 46677999999999988732 2237877754
No 75
>PHA02862 5L protein; Provisional
Probab=95.53 E-value=0.011 Score=46.03 Aligned_cols=44 Identities=30% Similarity=0.714 Sum_probs=33.1
Q ss_pred CcCcccccCCCCceecCCCC-----cccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H-----~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
+.|-||.+...+... ||.. .-|.+|+.+|.. ++..||+|+.+..
T Consensus 3 diCWIC~~~~~e~~~-PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERNN-FCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCcc-cccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 579999987665543 4643 469999999965 4468999998775
No 76
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.43 E-value=0.029 Score=48.03 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCCCCcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
......|||....+.. ..+-+|||+|+..++.+.. ....||.|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3556789999977753 3556799999999999974 4668999999886
No 77
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0094 Score=51.41 Aligned_cols=90 Identities=22% Similarity=0.542 Sum_probs=50.0
Q ss_pred cCcccccCCC-C----ceecCCCCcccHhhHHHHcC-CCCCCCCCCcCcccccCCCceeecCCCCccCCcccchHHHHHH
Q 028459 111 ECGICLEPCT-K----MVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKRVNSEDLWVLTCTDDVIDPETVSKEDLLRF 184 (208)
Q Consensus 111 ~C~ICle~~~-~----~vl~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~l~R~ 184 (208)
.|++|-.... . ....+|||..|.+|...... .+..||-|-..+... .+.+.+-.+..++-+.-.++.+.|+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~---nfr~q~fED~~vekEv~iRrri~~~ 78 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN---NFRVQTFEDPTVEKEVDIRRRILRI 78 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc---ccchhhcchhHHHHHHHHHHHHHHH
Confidence 5889974322 1 22236999999999999855 556899997766432 2222322222233333333344444
Q ss_pred HHHHhhCCCCCchhHHHHhhhhc
Q 028459 185 YLYINSLPKDYPDALFVVYYEYL 207 (208)
Q Consensus 185 ~~~i~~lp~~~~~~~~~~~~~~~ 207 (208)
| ++--...++++-+ |.|||
T Consensus 79 ~---nk~~eeF~~~Lae-yndyl 97 (300)
T KOG3800|consen 79 F---NKKEEEFTGSLAE-YNDYL 97 (300)
T ss_pred h---ccchhhhhhhHHH-Hhccc
Confidence 3 2333344444444 77765
No 78
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.023 Score=49.92 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCCCcCcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 107 EREDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
.....|++|+....++ ++.--|-+||..|+-+.....+.||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3457899999776654 6665799999999999998999999764433
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.71 E-value=0.011 Score=53.16 Aligned_cols=47 Identities=30% Similarity=0.663 Sum_probs=33.4
Q ss_pred CCCCcCcccccCCC----CceecCCCCcccHhhHHHHcCC--CCCCCCCCcCc
Q 028459 107 EREDECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTK--SESCPFCRGSM 153 (208)
Q Consensus 107 ~~~~~C~ICle~~~----~~vl~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~~ 153 (208)
+-+..|..|-+..- .---.+|.|+||.+|+.+.+.+ ..+||-||+-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34567999976543 1122459999999999988653 46999999433
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=0.019 Score=55.87 Aligned_cols=42 Identities=24% Similarity=0.561 Sum_probs=33.7
Q ss_pred CcCcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|..|-....-| |.-.|||.||..|+. .....||.|+....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 5799998777754 556799999999998 46679999987443
No 81
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.031 Score=47.38 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=40.8
Q ss_pred CCCcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
....|++|.+...+ .++.+|||++|.+|.++.......||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 34679999988775 477889999999999999998999999988886
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.45 E-value=0.034 Score=49.15 Aligned_cols=48 Identities=31% Similarity=0.719 Sum_probs=34.2
Q ss_pred CcCcccccCCCC--c-ee-cCCCCcccHhhHHHHcC-CCCCCCCCCcCccccc
Q 028459 110 DECGICLEPCTK--M-VL-PNCCHAMCIKCYRNWNT-KSESCPFCRGSMKRVN 157 (208)
Q Consensus 110 ~~C~ICle~~~~--~-vl-~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~~~~ 157 (208)
+-|+.|+|++.. . .. -+||...|.-|.....+ -...||-||......+
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 459999988652 2 22 25999999999877644 3458999998776443
No 83
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.42 E-value=0.038 Score=49.44 Aligned_cols=29 Identities=28% Similarity=0.819 Sum_probs=21.2
Q ss_pred CCCcccHhhHHHHcC-------------CCCCCCCCCcCccc
Q 028459 127 CCHAMCIKCYRNWNT-------------KSESCPFCRGSMKR 155 (208)
Q Consensus 127 C~H~Fc~~Ci~~w~~-------------~~~~CP~CR~~~~~ 155 (208)
|.-..|.+|+-+|.- .+..||.||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 344569999999932 22389999998864
No 84
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.35 E-value=0.026 Score=49.13 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=34.7
Q ss_pred CcCcccccCCCCceec-CCCCcccHhhHHHH-cCCCCCCCCCCc
Q 028459 110 DECGICLEPCTKMVLP-NCCHAMCIKCYRNW-NTKSESCPFCRG 151 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w-~~~~~~CP~CR~ 151 (208)
..|+.|......++.+ .|||.||..||..- +.....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6899999888877665 68999999999865 556679999965
No 85
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.22 E-value=0.043 Score=42.25 Aligned_cols=48 Identities=38% Similarity=0.895 Sum_probs=35.8
Q ss_pred CCCcCcccccCCCCc--eecC--CCCcccHhhHHH-H--cCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKM--VLPN--CCHAMCIKCYRN-W--NTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~--vl~~--C~H~Fc~~Ci~~-w--~~~~~~CP~CR~~~~~ 155 (208)
.-.+|.||.|...+. ..|+ ||-..|..|.-. | ......||.|+.+++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 447899999876543 2232 999999999865 5 2356799999998874
No 86
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.18 E-value=0.014 Score=50.72 Aligned_cols=45 Identities=31% Similarity=0.731 Sum_probs=33.2
Q ss_pred CcCcccccCCCC---ceecCCCCcccHhhHHHHcC------------------C-----CCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT------------------K-----SESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~------------------~-----~~~CP~CR~~~~ 154 (208)
..|.||+--|.. -..+.|-|.||..|+.+++. + ...||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 479999966653 35567999999999866521 1 127999999987
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.043 Score=44.35 Aligned_cols=47 Identities=21% Similarity=0.599 Sum_probs=31.5
Q ss_pred cCcccccCCCCc-----e--ecCCCCcccHhhHHHHcC-----CC------CCCCCCCcCccccc
Q 028459 111 ECGICLEPCTKM-----V--LPNCCHAMCIKCYRNWNT-----KS------ESCPFCRGSMKRVN 157 (208)
Q Consensus 111 ~C~ICle~~~~~-----v--l~~C~H~Fc~~Ci~~w~~-----~~------~~CP~CR~~~~~~~ 157 (208)
.|+||...--++ + ...||..||.-|+.+|+. ++ ..||.|..++....
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 477776432222 1 134999999999999953 11 28999998886443
No 88
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.88 E-value=0.018 Score=48.65 Aligned_cols=47 Identities=23% Similarity=0.710 Sum_probs=33.4
Q ss_pred CCCcCcccccCCC-C-----ceecCCCCcccHhhHHHHcCC-CCCCC--CCCcCcc
Q 028459 108 REDECGICLEPCT-K-----MVLPNCCHAMCIKCYRNWNTK-SESCP--FCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~-~-----~vl~~C~H~Fc~~Ci~~w~~~-~~~CP--~CR~~~~ 154 (208)
.+..||+|..+-- . -+-|.|=|.+|.+|..+.+.. ...|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3458999985422 1 244569999999999998654 45899 8865443
No 89
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.33 E-value=0.093 Score=32.53 Aligned_cols=38 Identities=24% Similarity=0.650 Sum_probs=22.3
Q ss_pred CcccccCCCCcee-c--CCCCcccHhhHHHHcCCCC--CCCCC
Q 028459 112 CGICLEPCTKMVL-P--NCCHAMCIKCYRNWNTKSE--SCPFC 149 (208)
Q Consensus 112 C~ICle~~~~~vl-~--~C~H~Fc~~Ci~~w~~~~~--~CP~C 149 (208)
|.+|.+....++. + .|+=.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788888776644 2 4888999999999865444 69987
No 90
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.15 E-value=0.013 Score=59.22 Aligned_cols=45 Identities=29% Similarity=0.712 Sum_probs=38.2
Q ss_pred CCCcCcccccCCC-CceecCCCCcccHhhHHHHcCCCCCCCCCCcC
Q 028459 108 REDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGS 152 (208)
Q Consensus 108 ~~~~C~ICle~~~-~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~ 152 (208)
....|.||.+... .+....|||.+|..|...|+..+..||.|+..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4458999998877 45556699999999999999999999999843
No 91
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.085 Score=44.21 Aligned_cols=47 Identities=21% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCcCcccccCCCC--ceecCCCCcccHhhHHHHcC--------CCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK--MVLPNCCHAMCIKCYRNWNT--------KSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w~~--------~~~~CP~CR~~~~ 154 (208)
....|..|-..... .+...|-|.||.+|+.+|.. ..-.||.|..++-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34568888766553 45567999999999999932 2348999988774
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.43 E-value=0.055 Score=34.27 Aligned_cols=41 Identities=27% Similarity=0.754 Sum_probs=25.1
Q ss_pred CcccccCCCCceecCC-CCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 112 CGICLEPCTKMVLPNC-CHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 112 C~ICle~~~~~vl~~C-~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
|--|. |.+.-+..| .|..|..|+...+..+..||+|..++.
T Consensus 5 CKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp --SS---S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred Chhhh--hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 44554 233334446 589999999999999999999998885
No 93
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=0.12 Score=50.80 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCCCcCcccccCCCC-c-eecCCCCcccHhhHHHH
Q 028459 107 EREDECGICLEPCTK-M-VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 107 ~~~~~C~ICle~~~~-~-vl~~C~H~Fc~~Ci~~w 139 (208)
+..+.|.+|.-++.. + .+-+|||.||.+|+.+-
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 455689999866542 2 44569999999999765
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.07 Score=44.32 Aligned_cols=40 Identities=30% Similarity=0.717 Sum_probs=32.0
Q ss_pred cCcccccCCCCceecCCCC-cccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 111 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 111 ~C~ICle~~~~~vl~~C~H-~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.|-.|-+.....++.||.| .+|..|-.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 3889988888888888999 689999543 457999997664
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.09 E-value=0.058 Score=41.66 Aligned_cols=34 Identities=24% Similarity=0.640 Sum_probs=24.4
Q ss_pred CCcCcccccCCCC--cee-cCCC------CcccHhhHHHHcCC
Q 028459 109 EDECGICLEPCTK--MVL-PNCC------HAMCIKCYRNWNTK 142 (208)
Q Consensus 109 ~~~C~ICle~~~~--~vl-~~C~------H~Fc~~Ci~~w~~~ 142 (208)
..+|.||++.... ++. .+|| |.||.+|+.+|...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 3589999987665 433 2354 67999999999543
No 96
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.02 E-value=0.074 Score=51.97 Aligned_cols=49 Identities=33% Similarity=0.764 Sum_probs=35.3
Q ss_pred CCCcCcccccCCCC--ce--ecCCCCcccHhhHHHHcCC-------CCCCCCCCcCcccc
Q 028459 108 REDECGICLEPCTK--MV--LPNCCHAMCIKCYRNWNTK-------SESCPFCRGSMKRV 156 (208)
Q Consensus 108 ~~~~C~ICle~~~~--~v--l~~C~H~Fc~~Ci~~w~~~-------~~~CP~CR~~~~~~ 156 (208)
+..+|.||.+.+.. ++ -..|=|+||..||.+|-.. .=.||.|+...+.+
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 44689999988763 22 2358899999999999322 12799998655533
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.086 Score=46.12 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=31.9
Q ss_pred CCcCcccccCCC-CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 109 EDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 109 ~~~C~ICle~~~-~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
..-|.-|=-.+. -+.+.+|.|+||.+|.+. ...+.||.|-..+.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 345666753333 345566999999999865 3357999998777644
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.70 E-value=0.16 Score=32.05 Aligned_cols=38 Identities=26% Similarity=0.726 Sum_probs=22.8
Q ss_pred CcccccCCC--CceecCCCC-----cccHhhHHHHcC--CCCCCCCC
Q 028459 112 CGICLEPCT--KMVLPNCCH-----AMCIKCYRNWNT--KSESCPFC 149 (208)
Q Consensus 112 C~ICle~~~--~~vl~~C~H-----~Fc~~Ci~~w~~--~~~~CP~C 149 (208)
|-||++... .+...||+- ..|.+|+.+|.. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 568885543 245555643 469999999965 45679887
No 99
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=90.65 E-value=0.15 Score=46.62 Aligned_cols=35 Identities=29% Similarity=0.614 Sum_probs=30.2
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcC
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT 141 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~ 141 (208)
+++..|+||..-+.+++..+|+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 45678999999999998888999999999987644
No 100
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=0.083 Score=40.82 Aligned_cols=58 Identities=24% Similarity=0.662 Sum_probs=35.8
Q ss_pred CCCCCCCcCccccc-CCCCceecCCCC-------cccHhhHHHHcCCCC----CCCCCCcCcccccCCCceeec
Q 028459 104 ADLEREDECGICLE-PCTKMVLPNCCH-------AMCIKCYRNWNTKSE----SCPFCRGSMKRVNSEDLWVLT 165 (208)
Q Consensus 104 ~~~~~~~~C~ICle-~~~~~vl~~C~H-------~Fc~~Ci~~w~~~~~----~CP~CR~~~~~~~~~~~~~~~ 165 (208)
.....+..|.||.. .|.++ ||| .||..|--+-..+++ .|-+|+....-+..+.-|...
T Consensus 60 aGv~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~ 129 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYN 129 (169)
T ss_pred cccCcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHh
Confidence 33466789999984 45554 555 356666544433322 799998877655555556653
No 101
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.84 E-value=0.21 Score=43.15 Aligned_cols=42 Identities=26% Similarity=0.594 Sum_probs=33.3
Q ss_pred CcCcccccCCC----CceecCCCCcccHhhHHHHcCCCCCCCCCCc
Q 028459 110 DECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 110 ~~C~ICle~~~----~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
..||||.+... .+...+|||..|..|.+.....+-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999997643 3455669999999999998655599999987
No 102
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=89.55 E-value=0.32 Score=33.98 Aligned_cols=51 Identities=24% Similarity=0.633 Sum_probs=21.6
Q ss_pred CCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 109 EDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 109 ~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
...|.||-+..-. ...-.|+--.|..|.+ +....++.||.|+.+.++...+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgs 67 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGS 67 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT-
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCC
Confidence 3579999876431 2334588788999996 5577889999999888765544
No 103
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=89.34 E-value=0.57 Score=47.37 Aligned_cols=52 Identities=27% Similarity=0.658 Sum_probs=38.9
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
+...|.||-+.... ...-.||---|..|.+ +..+.++.||.|+...++...+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgs 75 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGS 75 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCC
Confidence 34589999977541 2344578779999995 5577889999999999876644
No 104
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=0.21 Score=42.66 Aligned_cols=51 Identities=25% Similarity=0.496 Sum_probs=34.7
Q ss_pred CCCCCcCcccccCCCCc----eecCC-----CCcccHhhHHHHcCCC--------CCCCCCCcCcccc
Q 028459 106 LEREDECGICLEPCTKM----VLPNC-----CHAMCIKCYRNWNTKS--------ESCPFCRGSMKRV 156 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~----vl~~C-----~H~Fc~~Ci~~w~~~~--------~~CP~CR~~~~~~ 156 (208)
.+.+.-|-||+..-++- ..-|| .|.-|.+|+..|...+ -+||.|+.+..-+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 34556799999655431 22335 4778999999995422 3899999876533
No 105
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.66 E-value=0.13 Score=49.40 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=37.0
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHH---cCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w---~~~~~~CP~CR~~~~ 154 (208)
.+|+||......+++..|.|.||..|+..- ......||+|+..+.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 589999999888888899999999998653 333568999997664
No 106
>PLN02400 cellulose synthase
Probab=87.52 E-value=0.79 Score=46.41 Aligned_cols=52 Identities=21% Similarity=0.635 Sum_probs=38.5
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
....|.||-+.... ...-.|+---|..|.+ +..+.++.||.|+...++...+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgs 94 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGS 94 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCC
Confidence 34589999977542 2344577778999995 4567889999999999876543
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.44 E-value=0.27 Score=42.74 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCCcccHhhHHHHcC-------------CCCCCCCCCcCccccc
Q 028459 127 CCHAMCIKCYRNWNT-------------KSESCPFCRGSMKRVN 157 (208)
Q Consensus 127 C~H~Fc~~Ci~~w~~-------------~~~~CP~CR~~~~~~~ 157 (208)
|....|.+|+-+|.. ++.+||.||+.+.-.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 566789999999832 3449999999887433
No 108
>PLN02189 cellulose synthase
Probab=85.92 E-value=0.85 Score=46.01 Aligned_cols=52 Identities=23% Similarity=0.642 Sum_probs=38.6
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
....|.||-+.... .....||--.|..|.+ +..+.++.||.|+...++.+.+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs 92 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGS 92 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCC
Confidence 34589999977541 2344588889999995 4467788999999999876644
No 109
>PLN02436 cellulose synthase A
Probab=85.27 E-value=1.4 Score=44.69 Aligned_cols=52 Identities=23% Similarity=0.681 Sum_probs=38.3
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
....|.||-+.... .....||--.|..|.+ +....++.||.|+...++.+.+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGS 94 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCC
Confidence 34589999977531 2334588889999995 3466788999999999876643
No 110
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.8 Score=41.34 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCCcCcccccCC---CCceecCCCCcccHhhHHHHcCCC---CCCCCCCcC
Q 028459 108 REDECGICLEPC---TKMVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGS 152 (208)
Q Consensus 108 ~~~~C~ICle~~---~~~vl~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~~ 152 (208)
....|||=.+.- .+|....|||+.+.+-+.+...+. -+||.|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 346799876443 346667799999999999985433 589999543
No 111
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.17 E-value=0.49 Score=46.08 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=22.9
Q ss_pred eecCCCCcccHhhHHHHcCCCCCCCC
Q 028459 123 VLPNCCHAMCIKCYRNWNTKSESCPF 148 (208)
Q Consensus 123 vl~~C~H~Fc~~Ci~~w~~~~~~CP~ 148 (208)
+...|||..|.+|..+|......||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 44569999999999999998889985
No 112
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=83.39 E-value=1.8 Score=43.84 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=38.1
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
....|.||-+.... ...-.|+--.|..|.+ +..+.++.||.|+...++...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~ 73 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGC 73 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCC
Confidence 34579999877541 2344588789999995 4467789999999998865533
No 113
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.30 E-value=0.65 Score=42.09 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=24.3
Q ss_pred CCCcCcccc-cCCCC---ceecCCCCcccHhhHHHHcC
Q 028459 108 REDECGICL-EPCTK---MVLPNCCHAMCIKCYRNWNT 141 (208)
Q Consensus 108 ~~~~C~ICl-e~~~~---~vl~~C~H~Fc~~Ci~~w~~ 141 (208)
...+|.||+ +.... .....|+|.||.+|..+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 356899999 43332 13456999999999987743
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.83 E-value=0.81 Score=42.16 Aligned_cols=35 Identities=26% Similarity=0.765 Sum_probs=28.9
Q ss_pred CCCCcCcccccCCCC-ceecCCCCcccHhhHHHHcC
Q 028459 107 EREDECGICLEPCTK-MVLPNCCHAMCIKCYRNWNT 141 (208)
Q Consensus 107 ~~~~~C~ICle~~~~-~vl~~C~H~Fc~~Ci~~w~~ 141 (208)
....+|.||.+.... .....|||.||..|+...+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 455789999988874 66778999999999998754
No 115
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.78 E-value=1.2 Score=43.74 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=35.5
Q ss_pred CCCcCcccccCCC--CceecCCCCc-----ccHhhHHHHcCC--CCCCCCCCcCcccc
Q 028459 108 REDECGICLEPCT--KMVLPNCCHA-----MCIKCYRNWNTK--SESCPFCRGSMKRV 156 (208)
Q Consensus 108 ~~~~C~ICle~~~--~~vl~~C~H~-----Fc~~Ci~~w~~~--~~~CP~CR~~~~~~ 156 (208)
++..|-||...-. ++..-||... .|.+|+.+|... ..+|-+|+.+++..
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3478999994432 4555557543 699999999764 46899999988754
No 116
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.59 E-value=0.54 Score=45.01 Aligned_cols=36 Identities=33% Similarity=0.702 Sum_probs=27.5
Q ss_pred CcCcccccCCC----CceecCCCCcccHhhHHHHcCCCCCCC
Q 028459 110 DECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCP 147 (208)
Q Consensus 110 ~~C~ICle~~~----~~vl~~C~H~Fc~~Ci~~w~~~~~~CP 147 (208)
.-|+||+..|. .++.+.|||+.|..|+.... +.+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 46999986654 35677799999999998743 35777
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.46 E-value=1.6 Score=42.82 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=29.9
Q ss_pred CcCcccccCCCC-------ceecCCCCcccHhhHHHHcC------CCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK-------MVLPNCCHAMCIKCYRNWNT------KSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~~w~~------~~~~CP~CR~~~~ 154 (208)
..|.+|.-.+.. -.+.+|+|.||..||..|.. ..-.|++|..-+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 456666543332 23345999999999999943 2337899987664
No 118
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.92 E-value=1.3 Score=38.54 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=25.7
Q ss_pred CCCcCcccccCCCCceecCC----CCcccHhhHHHHcC
Q 028459 108 REDECGICLEPCTKMVLPNC----CHAMCIKCYRNWNT 141 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C----~H~Fc~~Ci~~w~~ 141 (208)
...-|.+|.|..++.-.-.| .|.||..|-++-.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 34679999999887633335 89999999887643
No 119
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=72.78 E-value=1.1 Score=38.95 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=23.2
Q ss_pred CCCCcCcccccCCCCceec-----CCCCcccHhhHHHHcCCCCCCCCCCc
Q 028459 107 EREDECGICLEPCTKMVLP-----NCCHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~-----~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
.....||+|=....-.++. +=.|.+|.-|-.+|......||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3457899998665433222 12467899999999888889999953
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.51 E-value=2.5 Score=41.26 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=31.2
Q ss_pred cCcccccCCCC--ceecCCCCcccHhhHHHHcCCCCCCCC--CCc
Q 028459 111 ECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPF--CRG 151 (208)
Q Consensus 111 ~C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w~~~~~~CP~--CR~ 151 (208)
.|.+|-..... ...+.|||.-|.+|+.+|+...+.||. |..
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 57777654442 234569999999999999999999988 643
No 121
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.91 E-value=2.8 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=9.9
Q ss_pred cCcccccCCCC--ceecCCCCcc
Q 028459 111 ECGICLEPCTK--MVLPNCCHAM 131 (208)
Q Consensus 111 ~C~ICle~~~~--~vl~~C~H~F 131 (208)
.||-|...... ..-+.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 35555544332 2334566655
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.27 E-value=3.4 Score=35.31 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w 139 (208)
.-+-|+.|+.++.+++.++=||.||..||.+.
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEY 73 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHH
Confidence 34569999999999999999999999999887
No 123
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=69.12 E-value=3.8 Score=26.03 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=19.0
Q ss_pred CcCcccccCCCCcee-cCCCCcccHhhHHHHc-----CCCCCCCCCCcC
Q 028459 110 DECGICLEPCTKMVL-PNCCHAMCIKCYRNWN-----TKSESCPFCRGS 152 (208)
Q Consensus 110 ~~C~ICle~~~~~vl-~~C~H~Fc~~Ci~~w~-----~~~~~CP~CR~~ 152 (208)
..|+|....+..++. ..|.|.-|.+= ..|+ ...-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 469999888887755 46999865442 2332 223379999764
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.92 E-value=4.5 Score=35.82 Aligned_cols=45 Identities=29% Similarity=0.726 Sum_probs=36.0
Q ss_pred CcCcccccCCC---Cceec-CCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCT---KMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~---~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+||-+... ...+| +|||..|..|+..-......||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 68999998663 23333 58999999999888888899999997765
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.21 E-value=4.2 Score=36.88 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=29.5
Q ss_pred CCcCcccccCCCC------ceecCCCCcccHhhHHHHcCCCCCCCCC
Q 028459 109 EDECGICLEPCTK------MVLPNCCHAMCIKCYRNWNTKSESCPFC 149 (208)
Q Consensus 109 ~~~C~ICle~~~~------~vl~~C~H~Fc~~Ci~~w~~~~~~CP~C 149 (208)
-..|+.|.-.... ..-. |||.||..|..+|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3579999744331 2334 99999999999998888877655
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.84 E-value=2.8 Score=34.90 Aligned_cols=46 Identities=15% Similarity=0.416 Sum_probs=36.8
Q ss_pred CCCcCcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 108 REDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 108 ~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
+-..|.+|......+ ...+||=.+|..|+...+++...||.|..-.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 446899999876654 3456888899999999999999999995433
No 127
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=66.68 E-value=8 Score=34.27 Aligned_cols=49 Identities=27% Similarity=0.640 Sum_probs=32.4
Q ss_pred CCCCcCcccccCCC--------------C-----ceecCCCCcccHhhHHHHcC---------CCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCT--------------K-----MVLPNCCHAMCIKCYRNWNT---------KSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~--------------~-----~vl~~C~H~Fc~~Ci~~w~~---------~~~~CP~CR~~~~~ 155 (208)
..+.+||+|+..-. + -...+|||.--.+=..-|.+ -+..||+|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34679999984321 0 13456999766667777833 23489999877754
No 128
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=66.65 E-value=3.6 Score=30.82 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=28.2
Q ss_pred CCCcCcccccCCC-----CceecCCCCcccHhhHHHHcCCCC--CCCCCCcCc
Q 028459 108 REDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTKSE--SCPFCRGSM 153 (208)
Q Consensus 108 ~~~~C~ICle~~~-----~~vl~~C~H~Fc~~Ci~~w~~~~~--~CP~CR~~~ 153 (208)
.+..|.+|...+. ...-..|+|.+|..|-.. ..... .|.+|...-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHHH
Confidence 4568999987654 235677999999999654 11112 588886543
No 129
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=66.37 E-value=1.7 Score=28.14 Aligned_cols=17 Identities=29% Similarity=1.157 Sum_probs=14.5
Q ss_pred cCCCCcccHhhHHHHcC
Q 028459 125 PNCCHAMCIKCYRNWNT 141 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~ 141 (208)
+.|||.||..|..+|..
T Consensus 44 ~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 44 PKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCeECCCCCCcCCC
Confidence 47999999999998854
No 130
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=65.24 E-value=2.7 Score=37.04 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=32.2
Q ss_pred CCCcCcccccCCCCcee---cCC--CCcccHhhHHHHcCCCCCCCCCCc
Q 028459 108 REDECGICLEPCTKMVL---PNC--CHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl---~~C--~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
....||+|-....-.++ ..= .|..|.-|-.+|......||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999876542221 123 356799999999998999999975
No 131
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.08 E-value=6.1 Score=33.85 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=33.9
Q ss_pred CCCCcCcccccCCC----CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCT----KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~----~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.....|+|---.+. ...+-.|||+|-.+-+.+.. ++.|+.|.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 34567998754433 34666799999998887743 679999998775
No 132
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.72 E-value=2.4 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=17.5
Q ss_pred cCCCCcccHhhHHHHcCCCCCCCCCCc-Cccc
Q 028459 125 PNCCHAMCIKCYRNWNTKSESCPFCRG-SMKR 155 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR~-~~~~ 155 (208)
..|||.|-..--.. -.....||.|.. .+.+
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQSIS-EDDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEEEcC-CCCCCcCCCCCCCceEE
Confidence 46888875432111 134568999987 5543
No 133
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.03 E-value=5.6 Score=33.56 Aligned_cols=29 Identities=21% Similarity=0.688 Sum_probs=24.2
Q ss_pred ccHhhHHHHcCCCCCCCCCCcCcccccCC
Q 028459 131 MCIKCYRNWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 131 Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
-|.+|-.+...+...||+|++.....+|.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnpK 224 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNPK 224 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCCC
Confidence 49999999888899999999877666554
No 134
>PLN02195 cellulose synthase A
Probab=63.47 E-value=8.3 Score=38.97 Aligned_cols=45 Identities=20% Similarity=0.550 Sum_probs=33.7
Q ss_pred CcCcccccCCC-----C--ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCT-----K--MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~-----~--~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~ 154 (208)
..|.||-+... + ...-.||---|..|.+ +-.+.++.||.|+...+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 47999987543 1 2445688889999995 33667889999998876
No 135
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=62.80 E-value=7.4 Score=34.43 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=36.5
Q ss_pred CCCCCCcCcccccCCCCceecCCCC-cccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCH-AMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H-~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..-...+|-.|-+.....++.+||| .||.+|.. ...+.+||.|.....
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccce
Confidence 3345568999988777777777999 58999987 566789999976543
No 136
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=62.65 E-value=5.7 Score=33.52 Aligned_cols=29 Identities=21% Similarity=0.767 Sum_probs=23.2
Q ss_pred ccHhhHHHHcCCCCCCCCCCcCcccccCC
Q 028459 131 MCIKCYRNWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 131 Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
-|.+|-.+...+...||+|+......||.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrNPK 279 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRNPK 279 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCCCC
Confidence 48889888888889999999877655553
No 137
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.60 E-value=6.8 Score=38.00 Aligned_cols=44 Identities=27% Similarity=0.670 Sum_probs=35.4
Q ss_pred cCcccccCCCCceecCCCC-cccHhhHHHHc--CC----CCCCCCCCcCcc
Q 028459 111 ECGICLEPCTKMVLPNCCH-AMCIKCYRNWN--TK----SESCPFCRGSMK 154 (208)
Q Consensus 111 ~C~ICle~~~~~vl~~C~H-~Fc~~Ci~~w~--~~----~~~CP~CR~~~~ 154 (208)
.|+||-..........||| .-|..|..+.. .. .+.||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999988877777888999 89999987762 23 567899998665
No 138
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.08 E-value=1.4 Score=39.86 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=37.5
Q ss_pred CCCcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
-...|+||.+.... .....|||..|..|+++|+.....||.|+..+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 34579999866542 233459999999999999988889999998875
No 139
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=60.86 E-value=3.2 Score=36.50 Aligned_cols=44 Identities=20% Similarity=0.501 Sum_probs=32.0
Q ss_pred CCcCcccccCCCCcee-c---CCC--CcccHhhHHHHcCCCCCCCCCCcC
Q 028459 109 EDECGICLEPCTKMVL-P---NCC--HAMCIKCYRNWNTKSESCPFCRGS 152 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl-~---~C~--H~Fc~~Ci~~w~~~~~~CP~CR~~ 152 (208)
...||+|-....-.++ . .=| |..|.-|-.+|......||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4589999876543221 1 233 567999999999989999999753
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=60.82 E-value=2.9 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=16.6
Q ss_pred CCCcCcccccCCCCc----eecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTKM----VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w 139 (208)
+...|.+|...|... --..||+.||.+|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 346899999888531 23459999999997654
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=59.89 E-value=0.96 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=23.9
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccccc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVN 157 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~~ 157 (208)
..||.|..++... =||..|..|-... .....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~----~~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQ----GGHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEE----TTEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEe----CCEEECccccccc-eecccCCCcccHHHHHH
Confidence 4799998664322 2788899997763 33468999999987543
No 142
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=57.88 E-value=12 Score=32.20 Aligned_cols=46 Identities=20% Similarity=0.592 Sum_probs=33.4
Q ss_pred CCcCcccccCCCC----ceecCCC-----CcccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTK----MVLPNCC-----HAMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~----~vl~~C~-----H~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
...|-||.+.... ....+|. +..|..|+..|.. .+..|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999975442 3455563 3469999999976 6678999987665
No 143
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.90 E-value=5.7 Score=26.93 Aligned_cols=12 Identities=25% Similarity=1.019 Sum_probs=8.2
Q ss_pred cccHhhHHHHcC
Q 028459 130 AMCIKCYRNWNT 141 (208)
Q Consensus 130 ~Fc~~Ci~~w~~ 141 (208)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999953
No 144
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.26 E-value=7.2 Score=36.89 Aligned_cols=45 Identities=33% Similarity=0.789 Sum_probs=35.1
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+....|.||.... ....++|. |..|+.+|...+..||.|++.+..
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 3456899998777 44445577 778999999999999999987763
No 145
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=55.12 E-value=3.1 Score=22.17 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=6.3
Q ss_pred cCCCCCCCCCCcC
Q 028459 140 NTKSESCPFCRGS 152 (208)
Q Consensus 140 ~~~~~~CP~CR~~ 152 (208)
....+.||.|-.+
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3344455555443
No 146
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=54.43 E-value=11 Score=24.23 Aligned_cols=27 Identities=30% Similarity=0.760 Sum_probs=15.2
Q ss_pred ecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 124 LPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 124 l~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
-+.|++.||.+|=.=-.+.-..||-|.
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcChhhhccccCCcCCC
Confidence 367999999999543344556899884
No 147
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.13 E-value=17 Score=27.30 Aligned_cols=41 Identities=27% Similarity=0.527 Sum_probs=30.3
Q ss_pred CcCcccccCCCCc--------------eecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 110 DECGICLEPCTKM--------------VLPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 110 ~~C~ICle~~~~~--------------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
..|--|...|..+ .-+.|++.||.+|=.=+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588888766532 2467999999999766666666899995
No 148
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.20 E-value=4.7 Score=36.61 Aligned_cols=47 Identities=21% Similarity=0.600 Sum_probs=0.0
Q ss_pred CCcCcccccCCC--------------C-----ceecCCCCcccHhhHHHHcC---------CCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCT--------------K-----MVLPNCCHAMCIKCYRNWNT---------KSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~--------------~-----~vl~~C~H~Fc~~Ci~~w~~---------~~~~CP~CR~~~~~ 155 (208)
..+|++|+..-. + -...||||.--.+...-|.+ -+..||+|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999984311 1 13446999888888888933 12489999888863
No 149
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.35 E-value=14 Score=27.31 Aligned_cols=24 Identities=38% Similarity=0.776 Sum_probs=17.7
Q ss_pred CCcccHhhHHHHcCC---------CCCCCCCCc
Q 028459 128 CHAMCIKCYRNWNTK---------SESCPFCRG 151 (208)
Q Consensus 128 ~H~Fc~~Ci~~w~~~---------~~~CP~CR~ 151 (208)
.=.||..|+..+.+. .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 557999999877432 237999986
No 150
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=50.86 E-value=12 Score=30.81 Aligned_cols=37 Identities=30% Similarity=0.697 Sum_probs=25.7
Q ss_pred CCcCcccccC-----CCC---ceecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 109 EDECGICLEP-----CTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 109 ~~~C~ICle~-----~~~---~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
...|-+|-+. |.. ..-+.|+-.||..|..+ ..||.|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 3578888743 222 23467999999999662 6799994
No 152
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=47.92 E-value=6.4 Score=37.59 Aligned_cols=23 Identities=39% Similarity=0.882 Sum_probs=17.7
Q ss_pred cCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 125 PNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
..||+.||..|... .+.-||.|-
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCchH
Confidence 34999999999654 445599994
No 153
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.79 E-value=6.1 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=19.0
Q ss_pred CCCCcCcccccCCCC---ceecCCCCcccH
Q 028459 107 EREDECGICLEPCTK---MVLPNCCHAMCI 133 (208)
Q Consensus 107 ~~~~~C~ICle~~~~---~vl~~C~H~Fc~ 133 (208)
.+..+|.||+|+... ...++|-.++|+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 445789999998874 344568776664
No 154
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=47.75 E-value=12 Score=33.09 Aligned_cols=42 Identities=24% Similarity=0.509 Sum_probs=30.6
Q ss_pred CCcCcccccCC---CCceecCCCCcccHhhHHHHcCC---CCCCCCCC
Q 028459 109 EDECGICLEPC---TKMVLPNCCHAMCIKCYRNWNTK---SESCPFCR 150 (208)
Q Consensus 109 ~~~C~ICle~~---~~~vl~~C~H~Fc~~Ci~~w~~~---~~~CP~CR 150 (208)
-..||+=-+.- ..|+...|||+.-..-+++..+. +.+||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 35788765432 35677789999999999887543 34899994
No 155
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.54 E-value=15 Score=37.29 Aligned_cols=44 Identities=18% Similarity=0.448 Sum_probs=31.9
Q ss_pred CCcCcccccCCCCceecCCCC-----cccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVLPNCCH-----AMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H-----~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
...|+-|-........++||. .||..| .+......||.|.....
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 457888887665567788984 599999 33344567999987665
No 156
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=47.36 E-value=19 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.579 Sum_probs=23.6
Q ss_pred CCcCcccccCCC--C--ceecCCCCcccHhhHHH
Q 028459 109 EDECGICLEPCT--K--MVLPNCCHAMCIKCYRN 138 (208)
Q Consensus 109 ~~~C~ICle~~~--~--~vl~~C~H~Fc~~Ci~~ 138 (208)
...|++|-+.+. + .+-+.||-.+|++|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 357999999884 2 35588999999999755
No 157
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.68 E-value=7.4 Score=34.13 Aligned_cols=49 Identities=31% Similarity=0.663 Sum_probs=38.6
Q ss_pred CCCcCcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 108 REDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 108 ~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
....|-||.....-+ ...+|+|.||.-|...|....+-||-||.....+
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 445788888766544 3345999999999999999999999999877643
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.52 E-value=7.3 Score=24.90 Aligned_cols=11 Identities=27% Similarity=1.017 Sum_probs=5.9
Q ss_pred CCCCCCCcCcc
Q 028459 144 ESCPFCRGSMK 154 (208)
Q Consensus 144 ~~CP~CR~~~~ 154 (208)
..||+|.+++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 38999998885
No 159
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=46.39 E-value=15 Score=23.20 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=21.3
Q ss_pred CcCcccccCCCC----ceecCCCCcccHhhHHHH
Q 028459 110 DECGICLEPCTK----MVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 110 ~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w 139 (208)
..|.+|-..|.. .--..||+.||.+|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 468888766553 233469999999998654
No 160
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.32 E-value=7.4 Score=35.38 Aligned_cols=31 Identities=39% Similarity=0.807 Sum_probs=0.0
Q ss_pred eecCCCCcccHhhHHHHcC------CCCCCCCCCcCcccc
Q 028459 123 VLPNCCHAMCIKCYRNWNT------KSESCPFCRGSMKRV 156 (208)
Q Consensus 123 vl~~C~H~Fc~~Ci~~w~~------~~~~CP~CR~~~~~~ 156 (208)
+-++|||++-. ..|.. ...+||+||..-..+
T Consensus 305 VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~~V 341 (416)
T PF04710_consen 305 VYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGPYV 341 (416)
T ss_dssp ----------------------------------------
T ss_pred eeccccceeee---cccccccccccccccCCCccccCCce
Confidence 55679998643 45632 246899999766543
No 161
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=43.22 E-value=12 Score=37.24 Aligned_cols=47 Identities=26% Similarity=0.662 Sum_probs=32.2
Q ss_pred CCCCcCcccccCCCC--ceecCCCCcccHhhHHHHc--C----CCCCCCCCCcCc
Q 028459 107 EREDECGICLEPCTK--MVLPNCCHAMCIKCYRNWN--T----KSESCPFCRGSM 153 (208)
Q Consensus 107 ~~~~~C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w~--~----~~~~CP~CR~~~ 153 (208)
....-|..|.-...+ =+.+.|||.+|..|++.|. . ....|++|+..-
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 344578888754443 3567799999999999994 1 123788876433
No 162
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=42.16 E-value=11 Score=22.10 Aligned_cols=14 Identities=36% Similarity=0.966 Sum_probs=9.7
Q ss_pred CCCCCCCCCcCccc
Q 028459 142 KSESCPFCRGSMKR 155 (208)
Q Consensus 142 ~~~~CP~CR~~~~~ 155 (208)
....||.|...+.+
T Consensus 25 ~~~~CP~Cg~~~~r 38 (41)
T smart00834 25 PLATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCCccee
Confidence 34579999876543
No 163
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=41.54 E-value=28 Score=22.84 Aligned_cols=26 Identities=27% Similarity=0.828 Sum_probs=20.4
Q ss_pred CCC--cccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 127 CCH--AMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 127 C~H--~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
|.+ .||.+|....+ ...||.|...+.
T Consensus 25 CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 25 CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 544 69999998865 468999987774
No 164
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=39.84 E-value=19 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.744 Sum_probs=22.1
Q ss_pred CCCcCcccccCCCC--ceecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTK--MVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w 139 (208)
...+|+||+-.... -..--|.-..|..|..+.
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheecc
Confidence 44689999855432 223348889999998776
No 165
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.83 E-value=8.5 Score=37.90 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=27.4
Q ss_pred CCCcCcccccCCC-------CceecCCCCcccHhhHHHHcCCCCCCCCC
Q 028459 108 REDECGICLEPCT-------KMVLPNCCHAMCIKCYRNWNTKSESCPFC 149 (208)
Q Consensus 108 ~~~~C~ICle~~~-------~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~C 149 (208)
.+..|.-|.++.. ..+...|||.||..|+..-..+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3348999997644 234556999999999976544333 4444
No 166
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=39.76 E-value=26 Score=19.66 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=18.8
Q ss_pred CcccccCCCC--ceecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 112 CGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 112 C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
|..|.+.+.. .....=+..||..| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 6667665544 22222355666655 4667776655
No 167
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=39.18 E-value=5.2 Score=25.75 Aligned_cols=18 Identities=33% Similarity=1.032 Sum_probs=14.6
Q ss_pred ecCCCCcccHhhHHHHcC
Q 028459 124 LPNCCHAMCIKCYRNWNT 141 (208)
Q Consensus 124 l~~C~H~Fc~~Ci~~w~~ 141 (208)
-+.|++.||..|-.+|..
T Consensus 43 C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 43 CPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp TTSCCSEECSSSTSESCT
T ss_pred CCCCCCcCccccCcccCC
Confidence 345999999999988844
No 168
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.09 E-value=21 Score=24.73 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=19.7
Q ss_pred CCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 128 CHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 128 ~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.|.||.+|...-+. ..||.|-..+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhh
Confidence 57899999987544 58999987764
No 169
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.83 E-value=15 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=16.7
Q ss_pred CcccccCCCCceecCCCCcccHh
Q 028459 112 CGICLEPCTKMVLPNCCHAMCIK 134 (208)
Q Consensus 112 C~ICle~~~~~vl~~C~H~Fc~~ 134 (208)
=-||.+.-...+.-.|||.||..
T Consensus 60 lfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecccccEEEEeccccccCh
Confidence 34777776666666799999863
No 170
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=37.72 E-value=25 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.758 Sum_probs=12.4
Q ss_pred CCCCcccHhhHHHHcCCCCCCCCC
Q 028459 126 NCCHAMCIKCYRNWNTKSESCPFC 149 (208)
Q Consensus 126 ~C~H~Fc~~Ci~~w~~~~~~CP~C 149 (208)
.|||.|=.. +.........||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 467765222 22222456789988
No 171
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=36.05 E-value=29 Score=21.59 Aligned_cols=31 Identities=23% Similarity=0.585 Sum_probs=16.2
Q ss_pred cCCCCcccHhhHHHHcCCCCCCCCCCc-Ccccc
Q 028459 125 PNCCHAMCIKCYRNWNTKSESCPFCRG-SMKRV 156 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR~-~~~~~ 156 (208)
..|||.|-..--.. ......||.|.. .+.++
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~~~~~r~ 40 (52)
T TIGR02605 9 TACGHRFEVLQKMS-DDPLATCPECGGEKLRRL 40 (52)
T ss_pred CCCCCEeEEEEecC-CCCCCCCCCCCCCceeEE
Confidence 45888774321000 012347999987 45433
No 172
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=36.04 E-value=14 Score=27.66 Aligned_cols=16 Identities=13% Similarity=0.544 Sum_probs=13.3
Q ss_pred HcCCCCCCCCCCcCcc
Q 028459 139 WNTKSESCPFCRGSMK 154 (208)
Q Consensus 139 w~~~~~~CP~CR~~~~ 154 (208)
-+++...|+.|+++++
T Consensus 81 mLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 81 MLGRVDACMHCKEPLT 96 (114)
T ss_pred hhchhhccCcCCCcCc
Confidence 3567789999999997
No 173
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=35.20 E-value=9.6 Score=25.37 Aligned_cols=11 Identities=36% Similarity=1.235 Sum_probs=8.1
Q ss_pred CCCCCCcCccc
Q 028459 145 SCPFCRGSMKR 155 (208)
Q Consensus 145 ~CP~CR~~~~~ 155 (208)
.||.||.++..
T Consensus 10 aCP~~kg~L~~ 20 (60)
T COG2835 10 ACPVCKGPLVY 20 (60)
T ss_pred eccCcCCcceE
Confidence 58888887653
No 174
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.59 E-value=24 Score=30.51 Aligned_cols=18 Identities=17% Similarity=0.626 Sum_probs=14.3
Q ss_pred cHhhHHHH-cCCCCCCCCC
Q 028459 132 CIKCYRNW-NTKSESCPFC 149 (208)
Q Consensus 132 c~~Ci~~w-~~~~~~CP~C 149 (208)
|.+|..+| +..++.||.-
T Consensus 58 HrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred hHHHHHHHHHHHcCCCCcc
Confidence 68999999 5677889944
No 175
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.02 E-value=30 Score=19.75 Aligned_cols=11 Identities=27% Similarity=0.767 Sum_probs=7.6
Q ss_pred CCCCCCCCCcC
Q 028459 142 KSESCPFCRGS 152 (208)
Q Consensus 142 ~~~~CP~CR~~ 152 (208)
....||.|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34589999653
No 176
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.70 E-value=7.9 Score=33.33 Aligned_cols=43 Identities=26% Similarity=0.575 Sum_probs=31.0
Q ss_pred CcCcccccCCC------CceecC--------CCCcccHhhHHHHcCC-CCCCCCCCcC
Q 028459 110 DECGICLEPCT------KMVLPN--------CCHAMCIKCYRNWNTK-SESCPFCRGS 152 (208)
Q Consensus 110 ~~C~ICle~~~------~~vl~~--------C~H~Fc~~Ci~~w~~~-~~~CP~CR~~ 152 (208)
..|.||..... .+.... |||..|..|+..-+.+ ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56999974433 233344 9999999999887443 3699999864
No 177
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=20 Score=33.06 Aligned_cols=35 Identities=23% Similarity=0.644 Sum_probs=26.1
Q ss_pred CceecCCCCcccHhhHHHHcC--------------------------CCCCCCCCCcCccc
Q 028459 121 KMVLPNCCHAMCIKCYRNWNT--------------------------KSESCPFCRGSMKR 155 (208)
Q Consensus 121 ~~vl~~C~H~Fc~~Ci~~w~~--------------------------~~~~CP~CR~~~~~ 155 (208)
..+.-.|||.||..|..+|.. +.+.||.|..++..
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek 238 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEK 238 (444)
T ss_pred cceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhc
Confidence 356677999999999877732 22379999888864
No 178
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.64 E-value=21 Score=25.82 Aligned_cols=12 Identities=33% Similarity=1.102 Sum_probs=10.1
Q ss_pred cccHhhHHHHcC
Q 028459 130 AMCIKCYRNWNT 141 (208)
Q Consensus 130 ~Fc~~Ci~~w~~ 141 (208)
.||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999953
No 179
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=31.02 E-value=52 Score=28.74 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=50.1
Q ss_pred CCCCcCcccccCCCCc-eec---CCCC--cccHhhHHHHcCCCCCCCCCCcCcccccCCCceeecC-CCCccCCcccchH
Q 028459 107 EREDECGICLEPCTKM-VLP---NCCH--AMCIKCYRNWNTKSESCPFCRGSMKRVNSEDLWVLTC-TDDVIDPETVSKE 179 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-vl~---~C~H--~Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~-~~~~~d~~~~~~e 179 (208)
+.-..||+|-...... +.. .-|- .-|.-|..+|..-..+|-.|-..= .-..|.... ....+.+++=.+=
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~----~l~y~sl~s~E~A~vkAEtC~~C 258 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSK----KLHYWSLESSELAAVKAETCGDC 258 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccC----CccceeccchhhhHhhhhcCCcH
Confidence 4556899998765532 221 1232 248999999988888999995422 223455544 2222333332221
Q ss_pred H--HHHHHHHHhhCCCCCchh
Q 028459 180 D--LLRFYLYINSLPKDYPDA 198 (208)
Q Consensus 180 ~--l~R~~~~i~~lp~~~~~~ 198 (208)
+ ++- +|.+|-|.+.|.+
T Consensus 259 ~sYlKi--lyqekdp~veavA 277 (308)
T COG3058 259 NSYLKI--LYQEKDPKVEAVA 277 (308)
T ss_pred HHHHHH--HHHhcCCccccch
Confidence 2 333 4778888877654
No 180
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=30.12 E-value=32 Score=21.77 Aligned_cols=36 Identities=25% Similarity=0.569 Sum_probs=20.0
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHc--CCCCCCCCCCc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWN--TKSESCPFCRG 151 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~ 151 (208)
...||.|-+.+....+ +.| |...-. .+.-.||+|..
T Consensus 2 ~f~CP~C~~~~~~~~L--~~H-----~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--VEH-----CEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH--HHH-----HHhHCcCCCCCccCCCchh
Confidence 3579999885443322 223 333322 23457999975
No 181
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=29.10 E-value=32 Score=29.80 Aligned_cols=48 Identities=23% Similarity=0.548 Sum_probs=28.5
Q ss_pred CCCCcCcccccCCCC---------ceecCCCCcccHhhH-HHHcCC----------CCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTK---------MVLPNCCHAMCIKCY-RNWNTK----------SESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~---------~vl~~C~H~Fc~~Ci-~~w~~~----------~~~CP~CR~~~~ 154 (208)
.....|.+|=..... .-..+|...+|.+=. ++|+-+ ...||.|.+.+-
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFA 226 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFA 226 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhc
Confidence 344678888644331 112346666666655 578421 238999988773
No 182
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.06 E-value=14 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=10.1
Q ss_pred CcccHhhHHHHc----CCCCCCCCCCc
Q 028459 129 HAMCIKCYRNWN----TKSESCPFCRG 151 (208)
Q Consensus 129 H~Fc~~Ci~~w~----~~~~~CP~CR~ 151 (208)
|.||..|-.+-. +....||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 667777755431 22346777753
No 183
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.97 E-value=60 Score=26.92 Aligned_cols=38 Identities=26% Similarity=0.556 Sum_probs=20.6
Q ss_pred cCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 111 ECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 111 ~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
.|.+|-...... .+..|..|...+......||.|-.++
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCcC
Confidence 577776544211 12357777766532234677776553
No 184
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=27.92 E-value=23 Score=27.89 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=14.7
Q ss_pred CCCcccHhhHHHHcCCC-----------CCCCCCCcCc
Q 028459 127 CCHAMCIKCYRNWNTKS-----------ESCPFCRGSM 153 (208)
Q Consensus 127 C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~~ 153 (208)
+||.| +.|+..+ -+||.|-..-
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 68888 4475432 3899996543
No 185
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.93 E-value=40 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.916 Sum_probs=10.7
Q ss_pred CCCCCCCCCCcCcc
Q 028459 141 TKSESCPFCRGSMK 154 (208)
Q Consensus 141 ~~~~~CP~CR~~~~ 154 (208)
...+.||+|..+..
T Consensus 37 ~~~p~CPlC~s~M~ 50 (59)
T PF14169_consen 37 EEEPVCPLCKSPMV 50 (59)
T ss_pred CCCccCCCcCCccc
Confidence 34579999988775
No 186
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.25 E-value=59 Score=29.05 Aligned_cols=41 Identities=20% Similarity=0.475 Sum_probs=26.4
Q ss_pred CcCcccccCCCC---ceecCCCCcccHhhHHHHcCCCCCCCCCC
Q 028459 110 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCR 150 (208)
Q Consensus 110 ~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR 150 (208)
..|-.|.+.... -....|.|.||.+|=.=....-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 458888554432 13456899999999543334445789885
No 187
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.14 E-value=36 Score=27.05 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=18.8
Q ss_pred CCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 127 CCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 127 C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
=.+.||.+|-.+-. .+||.|..+|.
T Consensus 26 ~~~~fC~kCG~~tI---~~Cp~C~~~Ir 50 (158)
T PF10083_consen 26 LREKFCSKCGAKTI---TSCPNCSTPIR 50 (158)
T ss_pred HHHHHHHHhhHHHH---HHCcCCCCCCC
Confidence 35679999976633 37999998886
No 188
>PRK11827 hypothetical protein; Provisional
Probab=21.81 E-value=20 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=9.6
Q ss_pred CCCCCCCCcCccc
Q 028459 143 SESCPFCRGSMKR 155 (208)
Q Consensus 143 ~~~CP~CR~~~~~ 155 (208)
--.||.|+.++..
T Consensus 8 ILaCP~ckg~L~~ 20 (60)
T PRK11827 8 IIACPVCNGKLWY 20 (60)
T ss_pred heECCCCCCcCeE
Confidence 3469999988863
No 189
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.72 E-value=92 Score=22.41 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=21.6
Q ss_pred CCcCcccccCCCCc---eecCCCCcccHhhHHHH
Q 028459 109 EDECGICLEPCTKM---VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 109 ~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w 139 (208)
...|.||....-.. ..++|...||..|....
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHHC
Confidence 46899999773221 22457889999998764
No 190
>PLN00131 hypothetical protein; Provisional
Probab=21.48 E-value=59 Score=26.01 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHhhhc
Q 028459 6 DHWAPLFWFLLQWVNSS 22 (208)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (208)
+=-|+||.|+.+|.|.-
T Consensus 56 s~~A~FF~F~sd~iDF~ 72 (218)
T PLN00131 56 TWGAPFFIFFAEWIDFL 72 (218)
T ss_pred cccchHHHHHHHHHHHH
Confidence 44589999999999976
No 191
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.34 E-value=52 Score=28.27 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred CcCcccccCCCCc-eecCCCCcccHhhHHHHcCC--CCCCCCCCcC
Q 028459 110 DECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTK--SESCPFCRGS 152 (208)
Q Consensus 110 ~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~ 152 (208)
..|||-.-+...| +-..|||.|=.+-|.+.... .-.||+=..+
T Consensus 177 ~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 5788876666655 44689999999999998655 4467775444
No 192
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=21.17 E-value=49 Score=24.80 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=12.5
Q ss_pred ccccCCCCceecCCCCcccH
Q 028459 114 ICLEPCTKMVLPNCCHAMCI 133 (208)
Q Consensus 114 ICle~~~~~vl~~C~H~Fc~ 133 (208)
||...- +.+.-.|||.||.
T Consensus 17 i~~~~~-k~vkc~CGh~f~d 35 (112)
T PF08882_consen 17 IVQKKD-KVVKCDCGHEFCD 35 (112)
T ss_pred EEEecC-ceeeccCCCeecC
Confidence 555443 3555579999986
No 193
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.64 E-value=27 Score=25.60 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=19.7
Q ss_pred CCCCCCCCcCcccccCCCc-eeecCCCCccCCcccchHHHHHHHH
Q 028459 143 SESCPFCRGSMKRVNSEDL-WVLTCTDDVIDPETVSKEDLLRFYL 186 (208)
Q Consensus 143 ~~~CP~CR~~~~~~~~~~~-~~~~~~~~~~d~~~~~~e~l~R~~~ 186 (208)
.+.||.||+....+...+. +.... +..+..+++.+.++..
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~id----i~~~~~~~~el~~~~~ 46 (111)
T cd03036 6 YPKCSTCRKAKKWLDEHGVDYTAID----IVEEPPSKEELKKWLE 46 (111)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEec----ccCCcccHHHHHHHHH
Confidence 4678888776654433222 11111 2334455666665543
No 194
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=20.58 E-value=58 Score=20.33 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.9
Q ss_pred cCcccccCCCCceecCCCCcccHhhHHHH
Q 028459 111 ECGICLEPCTKMVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 111 ~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w 139 (208)
.|.||-.....++.. .|+-.|.+|-.+.
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fIC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEehHHHHHHh
Confidence 388898887777766 7888899987664
Done!