Query 028459
Match_columns 208
No_of_seqs 254 out of 1846
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.4 7.2E-14 2.5E-18 94.5 5.2 54 105-158 10-66 (69)
2 3ng2_A RNF4, snurf, ring finge 99.4 2.3E-14 7.7E-19 97.2 2.4 49 107-155 8-63 (71)
3 2d8t_A Dactylidin, ring finger 99.4 8.3E-14 2.8E-18 94.9 4.9 49 106-154 12-60 (71)
4 1iym_A EL5; ring-H2 finger, ub 99.4 1.1E-13 3.6E-18 89.4 5.0 48 107-154 3-54 (55)
5 2djb_A Polycomb group ring fin 99.4 1.2E-13 4E-18 94.4 5.2 52 105-156 11-63 (72)
6 2ysl_A Tripartite motif-contai 99.4 3.9E-13 1.3E-17 91.6 7.5 51 105-155 16-69 (73)
7 2ea6_A Ring finger protein 4; 99.4 6E-14 2.1E-18 94.4 3.0 50 105-154 11-67 (69)
8 2csy_A Zinc finger protein 183 99.4 1.3E-13 4.4E-18 96.2 4.8 50 105-154 11-60 (81)
9 2yur_A Retinoblastoma-binding 99.4 1.8E-13 6.3E-18 94.0 4.6 52 103-154 9-63 (74)
10 2ecl_A Ring-box protein 2; RNF 99.4 2.1E-13 7E-18 95.6 4.7 47 108-154 14-75 (81)
11 2ect_A Ring finger protein 126 99.4 3.6E-13 1.2E-17 93.1 5.8 52 104-155 10-64 (78)
12 4ayc_A E3 ubiquitin-protein li 99.4 9.1E-14 3.1E-18 106.7 3.1 48 108-155 52-99 (138)
13 2ecy_A TNF receptor-associated 99.4 3.1E-13 1E-17 90.7 5.1 49 106-154 12-61 (66)
14 2ecm_A Ring finger and CHY zin 99.4 1.7E-13 5.7E-18 88.4 3.6 47 108-154 4-54 (55)
15 1chc_A Equine herpes virus-1 r 99.4 2.5E-13 8.4E-18 91.4 4.1 48 108-155 4-52 (68)
16 2ep4_A Ring finger protein 24; 99.4 2.7E-13 9.2E-18 92.8 4.0 50 106-155 12-64 (74)
17 1t1h_A Gspef-atpub14, armadill 99.4 3.4E-13 1.2E-17 93.2 4.4 49 106-154 5-54 (78)
18 2xeu_A Ring finger protein 4; 99.4 7.2E-14 2.5E-18 92.6 0.9 48 108-155 2-56 (64)
19 2ct2_A Tripartite motif protei 99.4 1E-12 3.5E-17 92.5 6.9 52 104-155 10-68 (88)
20 2ecn_A Ring finger protein 141 99.4 2.7E-13 9.1E-18 91.9 3.5 49 106-155 12-60 (70)
21 2l0b_A E3 ubiquitin-protein li 99.4 3.3E-13 1.1E-17 96.4 3.8 49 106-154 37-88 (91)
22 2egp_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 92.4 4.4 51 105-155 8-65 (79)
23 1x4j_A Ring finger protein 38; 99.4 1.9E-13 6.3E-18 94.0 2.2 49 106-154 20-71 (75)
24 1v87_A Deltex protein 2; ring- 99.3 8.2E-13 2.8E-17 97.7 4.7 47 109-155 25-94 (114)
25 2ecw_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 90.6 5.4 51 105-155 15-71 (85)
26 2ysj_A Tripartite motif-contai 99.3 2E-12 7E-17 85.7 5.6 45 105-149 16-63 (63)
27 2ecj_A Tripartite motif-contai 99.3 2.5E-12 8.5E-17 83.6 5.8 45 105-149 11-58 (58)
28 2ecv_A Tripartite motif-contai 99.3 3.1E-12 1.1E-16 89.1 6.6 51 105-155 15-71 (85)
29 3lrq_A E3 ubiquitin-protein li 99.3 4.6E-13 1.6E-17 97.3 2.1 47 108-154 21-69 (100)
30 3ztg_A E3 ubiquitin-protein li 99.3 1.2E-12 4E-17 93.3 4.0 51 104-154 8-61 (92)
31 2y43_A E3 ubiquitin-protein li 99.3 1.5E-12 5.3E-17 94.0 3.3 48 108-155 21-69 (99)
32 3dpl_R Ring-box protein 1; ubi 99.3 2.7E-12 9.1E-17 94.6 4.6 47 108-154 36-100 (106)
33 2ckl_A Polycomb group ring fin 99.3 1.9E-12 6.7E-17 95.0 3.7 49 107-155 13-62 (108)
34 1g25_A CDK-activating kinase a 99.3 2.3E-12 8E-17 86.1 3.2 47 109-155 3-55 (65)
35 3fl2_A E3 ubiquitin-protein li 99.3 1.6E-12 5.6E-17 97.7 2.7 48 107-154 50-98 (124)
36 2kr4_A Ubiquitin conjugation f 99.2 5.7E-12 2E-16 89.1 4.6 50 105-154 10-59 (85)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 2.4E-12 8.4E-17 96.7 2.8 50 107-156 5-61 (133)
38 1wgm_A Ubiquitin conjugation f 99.2 1.5E-11 5.3E-16 89.2 6.6 50 105-154 18-68 (98)
39 2kre_A Ubiquitin conjugation f 99.2 1.2E-11 4E-16 90.2 5.6 49 106-154 26-74 (100)
40 3l11_A E3 ubiquitin-protein li 99.2 2.5E-12 8.6E-17 95.4 1.5 48 107-154 13-61 (115)
41 1jm7_A BRCA1, breast cancer ty 99.2 2.7E-11 9.3E-16 88.9 6.3 46 110-155 22-70 (112)
42 1e4u_A Transcriptional repress 99.2 4.2E-11 1.4E-15 83.4 6.9 50 106-155 8-62 (78)
43 3hct_A TNF receptor-associated 99.2 5.8E-12 2E-16 94.0 2.5 50 105-154 14-64 (118)
44 1bor_A Transcription factor PM 99.2 1.1E-11 3.7E-16 80.7 3.2 45 107-154 4-48 (56)
45 2vje_A E3 ubiquitin-protein li 99.2 6.8E-12 2.3E-16 84.0 2.0 48 108-155 7-57 (64)
46 1z6u_A NP95-like ring finger p 99.2 1.4E-11 4.9E-16 95.9 3.6 49 107-155 76-125 (150)
47 2ckl_B Ubiquitin ligase protei 99.1 8.2E-12 2.8E-16 98.3 1.6 48 107-154 52-101 (165)
48 1rmd_A RAG1; V(D)J recombinati 99.1 1.1E-11 3.9E-16 91.9 2.0 49 107-155 21-70 (116)
49 2vje_B MDM4 protein; proto-onc 99.1 1.4E-11 4.7E-16 82.3 1.6 48 108-155 6-56 (63)
50 4a0k_B E3 ubiquitin-protein li 99.1 1E-11 3.4E-16 93.0 0.5 47 108-154 47-111 (117)
51 3knv_A TNF receptor-associated 99.1 1.4E-11 4.8E-16 95.0 1.0 50 105-154 27-77 (141)
52 4ap4_A E3 ubiquitin ligase RNF 99.1 1.2E-11 4.1E-16 92.9 0.4 49 107-155 70-125 (133)
53 1jm7_B BARD1, BRCA1-associated 99.1 3E-11 1E-15 89.9 2.5 45 108-154 21-66 (117)
54 4ic3_A E3 ubiquitin-protein li 99.1 2.9E-11 9.9E-16 83.1 1.8 43 109-155 24-67 (74)
55 2c2l_A CHIP, carboxy terminus 99.1 1E-10 3.6E-15 98.1 4.7 50 105-154 204-254 (281)
56 2y1n_A E3 ubiquitin-protein li 99.0 8E-11 2.7E-15 104.4 4.1 47 109-155 332-379 (389)
57 2d8s_A Cellular modulator of i 99.0 1.7E-10 5.9E-15 80.7 3.2 48 107-154 13-69 (80)
58 2ct0_A Non-SMC element 1 homol 99.0 1.2E-09 4.1E-14 75.2 6.9 49 107-155 13-64 (74)
59 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.3E-15 91.2 2.5 50 105-154 14-64 (170)
60 2ea5_A Cell growth regulator w 99.0 5.7E-10 2E-14 75.5 4.9 46 106-155 12-58 (68)
61 2yu4_A E3 SUMO-protein ligase 98.9 2.7E-10 9.2E-15 81.8 2.6 48 107-154 5-62 (94)
62 2ecg_A Baculoviral IAP repeat- 98.9 5.3E-10 1.8E-14 76.8 3.8 43 109-155 25-68 (75)
63 2yho_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 78.0 1.4 42 110-155 19-61 (79)
64 2f42_A STIP1 homology and U-bo 98.9 1.1E-09 3.7E-14 87.7 3.5 50 105-154 102-152 (179)
65 3htk_C E3 SUMO-protein ligase 98.7 6.7E-09 2.3E-13 87.4 4.7 49 106-154 178-231 (267)
66 1wim_A KIAA0161 protein; ring 98.7 1E-08 3.4E-13 73.2 3.7 45 108-152 4-61 (94)
67 3t6p_A Baculoviral IAP repeat- 98.7 4.8E-09 1.6E-13 91.9 2.0 44 108-155 294-338 (345)
68 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.5E-08 5.2E-13 88.2 1.3 49 106-154 305-372 (381)
69 2bay_A PRE-mRNA splicing facto 98.5 2.2E-08 7.4E-13 66.3 1.6 45 110-154 4-49 (61)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.5 6.5E-08 2.2E-12 63.8 2.6 48 107-154 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.2 9E-07 3.1E-11 63.7 3.2 47 111-157 3-51 (101)
72 3nw0_A Non-structural maintena 97.7 4.2E-05 1.4E-09 63.6 5.3 48 108-155 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0037 1.2E-07 44.3 3.3 31 109-139 3-36 (101)
74 2ko5_A Ring finger protein Z; 94.7 0.053 1.8E-06 38.4 5.1 46 108-154 27-72 (99)
75 2lri_C Autoimmune regulator; Z 93.9 0.098 3.3E-06 34.5 4.8 47 107-153 10-60 (66)
76 1weo_A Cellulose synthase, cat 93.2 0.31 1.1E-05 34.0 6.6 52 108-159 15-74 (93)
77 3u5n_A E3 ubiquitin-protein li 91.3 0.18 6.2E-06 40.4 4.1 48 106-153 4-55 (207)
78 3o36_A Transcription intermedi 91.2 0.29 9.9E-06 38.3 5.1 46 108-153 3-52 (184)
79 2l5u_A Chromodomain-helicase-D 89.9 0.34 1.2E-05 31.1 3.7 47 105-151 7-57 (61)
80 1mm2_A MI2-beta; PHD, zinc fin 89.3 0.23 8E-06 32.0 2.6 47 106-152 6-56 (61)
81 3m62_A Ubiquitin conjugation f 89.0 0.33 1.1E-05 47.4 4.4 49 106-154 888-937 (968)
82 2yql_A PHD finger protein 21A; 87.2 0.13 4.4E-06 32.5 0.2 46 105-150 5-54 (56)
83 2lbm_A Transcriptional regulat 83.1 2 6.9E-05 32.4 5.2 46 106-151 60-116 (142)
84 1fp0_A KAP-1 corepressor; PHD 83.0 1.2 4E-05 31.0 3.6 49 104-152 20-72 (88)
85 1wil_A KIAA1045 protein; ring 82.9 2.4 8.2E-05 29.3 5.0 34 106-139 12-47 (89)
86 2cs3_A Protein C14ORF4, MY039 82.3 0.89 3E-05 31.2 2.6 34 107-140 13-50 (93)
87 3ql9_A Transcriptional regulat 78.4 3.1 0.00011 30.9 4.8 46 106-151 54-110 (129)
88 2jmo_A Parkin; IBR, E3 ligase, 77.9 0.37 1.3E-05 32.7 -0.4 20 126-147 55-74 (80)
89 1xwh_A Autoimmune regulator; P 77.9 0.62 2.1E-05 30.3 0.7 45 107-151 6-54 (66)
90 2ysm_A Myeloid/lymphoid or mix 77.4 1.4 4.9E-05 31.4 2.6 44 107-150 5-55 (111)
91 2ro1_A Transcription intermedi 76.4 5.5 0.00019 31.2 6.0 45 109-153 2-50 (189)
92 2puy_A PHD finger protein 21A; 74.3 0.94 3.2E-05 28.8 0.8 46 107-152 3-52 (60)
93 1zbd_B Rabphilin-3A; G protein 71.6 3.8 0.00013 30.5 3.7 61 107-167 53-122 (134)
94 1z60_A TFIIH basal transcripti 69.6 3.5 0.00012 26.4 2.7 40 110-149 16-58 (59)
95 1f62_A Transcription factor WS 68.8 4.6 0.00016 24.4 3.1 41 111-151 2-49 (51)
96 2pv0_B DNA (cytosine-5)-methyl 68.4 6.1 0.00021 34.7 4.9 45 106-150 90-146 (386)
97 2gmg_A Hypothetical protein PF 67.9 1.7 5.7E-05 31.2 1.0 25 124-153 70-94 (105)
98 2l43_A N-teminal domain from h 67.7 4.8 0.00016 27.6 3.3 48 105-152 21-75 (88)
99 2k16_A Transcription initiatio 67.6 1.6 5.4E-05 28.9 0.8 48 107-154 16-70 (75)
100 1wd2_A Ariadne-1 protein homol 66.2 1.5 5E-05 28.2 0.4 33 110-142 7-47 (60)
101 3t7l_A Zinc finger FYVE domain 65.7 5.5 0.00019 27.4 3.3 32 108-139 19-54 (90)
102 2yw8_A RUN and FYVE domain-con 65.5 3.9 0.00013 27.6 2.5 32 108-139 18-53 (82)
103 1joc_A EEA1, early endosomal a 65.0 3.4 0.00012 30.3 2.3 30 109-138 69-102 (125)
104 1z2q_A LM5-1; membrane protein 64.9 7 0.00024 26.4 3.7 33 107-139 19-55 (84)
105 1wen_A Inhibitor of growth fam 64.5 14 0.0005 24.1 5.1 46 107-153 14-66 (71)
106 1x4u_A Zinc finger, FYVE domai 64.2 4.7 0.00016 27.3 2.7 31 108-138 13-47 (84)
107 3a1b_A DNA (cytosine-5)-methyl 63.9 5.7 0.0002 30.5 3.4 45 106-150 76-132 (159)
108 4gne_A Histone-lysine N-methyl 63.2 6 0.0002 28.3 3.2 46 106-154 12-64 (107)
109 1wfk_A Zinc finger, FYVE domai 62.7 6 0.00021 27.1 3.1 33 107-139 7-43 (88)
110 2d8v_A Zinc finger FYVE domain 62.4 4 0.00014 26.7 1.9 33 107-140 6-39 (67)
111 2zet_C Melanophilin; complex, 60.8 3.9 0.00013 31.2 1.9 44 108-152 67-117 (153)
112 2e6r_A Jumonji/ARID domain-con 60.2 2.5 8.7E-05 29.3 0.7 50 103-152 10-66 (92)
113 1vfy_A Phosphatidylinositol-3- 59.5 5.8 0.0002 26.1 2.4 29 110-138 12-44 (73)
114 2fiy_A Protein FDHE homolog; F 58.8 1.7 5.8E-05 37.0 -0.4 46 107-152 180-231 (309)
115 1weu_A Inhibitor of growth fam 56.4 16 0.00055 25.2 4.4 45 108-153 35-86 (91)
116 1y02_A CARP2, FYVE-ring finger 56.0 6.2 0.00021 28.8 2.3 43 109-151 19-65 (120)
117 3zyq_A Hepatocyte growth facto 55.9 5.2 0.00018 32.2 2.0 31 109-139 164-198 (226)
118 1dvp_A HRS, hepatocyte growth 55.7 5.1 0.00018 31.9 2.0 30 109-138 161-194 (220)
119 2lv9_A Histone-lysine N-methyl 55.6 7.4 0.00025 27.2 2.5 41 109-150 28-74 (98)
120 2a20_A Regulating synaptic mem 53.8 1.2 4.2E-05 28.6 -1.6 34 106-139 6-43 (62)
121 2ct7_A Ring finger protein 31; 49.9 1.7 5.8E-05 29.7 -1.6 17 123-139 45-61 (86)
122 2yt5_A Metal-response element- 48.2 7.6 0.00026 24.7 1.5 45 107-151 4-60 (66)
123 1x64_A Alpha-actinin-2 associa 48.0 37 0.0013 22.4 5.1 40 107-154 23-62 (89)
124 2o35_A Hypothetical protein DU 46.7 6.7 0.00023 27.8 1.1 11 131-141 43-53 (105)
125 3fyb_A Protein of unknown func 46.7 6.7 0.00023 27.8 1.1 11 131-141 42-52 (104)
126 3v43_A Histone acetyltransfera 46.2 30 0.001 24.4 4.6 43 108-150 4-62 (112)
127 1we9_A PHD finger family prote 46.1 5.6 0.00019 25.2 0.6 46 107-152 4-58 (64)
128 1x62_A C-terminal LIM domain p 45.2 27 0.00093 22.5 4.0 39 108-154 14-52 (79)
129 3mpx_A FYVE, rhogef and PH dom 39.8 6.1 0.00021 34.3 0.0 32 108-139 374-409 (434)
130 2ku3_A Bromodomain-containing 37.4 28 0.00096 22.7 3.0 46 106-151 13-65 (71)
131 2cor_A Pinch protein; LIM doma 37.3 42 0.0015 21.7 4.0 38 109-154 15-52 (79)
132 3i2d_A E3 SUMO-protein ligase 37.2 31 0.0011 30.0 4.1 46 109-154 249-299 (371)
133 1wyh_A SLIM 2, skeletal muscle 36.4 38 0.0013 21.1 3.6 37 110-154 6-44 (72)
134 4fo9_A E3 SUMO-protein ligase 36.1 34 0.0012 29.6 4.1 46 109-154 215-265 (360)
135 1wig_A KIAA1808 protein; LIM d 35.3 35 0.0012 21.7 3.3 37 110-154 6-42 (73)
136 2kdx_A HYPA, hydrogenase/ureas 34.1 20 0.00067 25.7 2.0 28 123-156 75-103 (119)
137 1m3v_A FLIN4, fusion of the LI 33.1 30 0.001 24.5 2.9 45 110-154 33-80 (122)
138 2vpb_A Hpygo1, pygopus homolog 32.5 24 0.00081 22.6 2.0 30 107-136 6-40 (65)
139 3ask_A E3 ubiquitin-protein li 32.5 18 0.00062 29.3 1.7 42 110-151 175-224 (226)
140 2d8z_A Four and A half LIM dom 31.9 34 0.0012 21.3 2.7 37 110-154 6-42 (70)
141 3lqh_A Histone-lysine N-methyl 31.8 24 0.00081 27.5 2.3 44 110-153 3-64 (183)
142 2dar_A PDZ and LIM domain prot 31.7 30 0.001 22.9 2.5 39 108-154 24-62 (90)
143 3shb_A E3 ubiquitin-protein li 30.8 16 0.00054 24.4 0.9 41 111-151 28-76 (77)
144 2e6s_A E3 ubiquitin-protein li 30.6 22 0.00074 23.7 1.6 42 110-151 27-76 (77)
145 2vnf_A ING 4, P29ING4, inhibit 30.6 9 0.00031 24.2 -0.3 43 108-151 9-58 (60)
146 2kwj_A Zinc finger protein DPF 30.1 22 0.00074 25.3 1.6 29 110-138 2-40 (114)
147 2d8x_A Protein pinch; LIM doma 29.8 34 0.0012 21.3 2.4 37 110-154 6-42 (70)
148 3c6w_A P28ING5, inhibitor of g 29.5 11 0.00037 23.8 -0.1 43 108-151 8-57 (59)
149 1nyp_A Pinch protein; LIM doma 29.3 31 0.0011 21.2 2.2 37 110-154 6-42 (66)
150 1x4l_A Skeletal muscle LIM-pro 28.8 38 0.0013 21.2 2.6 37 110-154 6-46 (72)
151 1x6a_A LIMK-2, LIM domain kina 28.7 39 0.0013 21.7 2.7 37 110-154 16-52 (81)
152 2csz_A Synaptotagmin-like prot 28.0 47 0.0016 22.2 2.9 31 106-136 22-57 (76)
153 3asl_A E3 ubiquitin-protein li 27.7 21 0.00072 23.2 1.1 41 111-151 20-68 (70)
154 2lcq_A Putative toxin VAPC6; P 27.6 20 0.00068 27.0 1.1 28 123-156 134-161 (165)
155 1x63_A Skeletal muscle LIM-pro 26.8 55 0.0019 21.0 3.1 37 110-154 16-54 (82)
156 1x68_A FHL5 protein; four-and- 26.6 38 0.0013 21.6 2.3 37 110-154 6-46 (76)
157 1wev_A Riken cDNA 1110020M19; 26.4 15 0.0005 25.1 0.1 48 107-154 14-74 (88)
158 3o70_A PHD finger protein 13; 25.4 17 0.00059 23.5 0.3 44 107-151 17-66 (68)
159 2dlo_A Thyroid receptor-intera 25.1 33 0.0011 22.1 1.8 38 109-154 15-52 (81)
160 2cur_A Skeletal muscle LIM-pro 24.8 33 0.0011 21.3 1.7 37 110-154 6-42 (69)
161 3pwf_A Rubrerythrin; non heme 24.8 34 0.0012 26.2 2.0 22 125-153 142-163 (170)
162 2jrp_A Putative cytoplasmic pr 24.3 5.8 0.0002 27.1 -2.2 40 110-154 3-42 (81)
163 2cuq_A Four and A half LIM dom 24.2 53 0.0018 20.9 2.6 37 110-154 16-52 (80)
164 2cu8_A Cysteine-rich protein 2 24.1 61 0.0021 20.5 2.9 38 109-154 9-47 (76)
165 2kgg_A Histone demethylase jar 23.9 42 0.0014 20.2 1.9 40 111-150 4-52 (52)
166 1v6g_A Actin binding LIM prote 23.8 41 0.0014 21.7 2.0 37 110-154 16-52 (81)
167 3mjh_B Early endosome antigen 23.7 22 0.00074 20.0 0.5 11 144-154 6-16 (34)
168 1lko_A Rubrerythrin all-iron(I 23.0 27 0.00094 27.1 1.1 23 125-153 159-181 (191)
169 2xjy_A Rhombotin-2; oncoprotei 22.8 38 0.0013 24.0 1.8 47 108-154 28-77 (131)
170 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.7 1.3E+02 0.0045 20.8 4.6 27 126-152 7-44 (140)
171 3c5k_A HD6, histone deacetylas 21.6 64 0.0022 22.8 2.8 26 109-134 24-49 (109)
172 1x4k_A Skeletal muscle LIM-pro 21.2 55 0.0019 20.3 2.2 37 110-154 6-44 (72)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=94.45 Aligned_cols=54 Identities=24% Similarity=0.610 Sum_probs=44.0
Q ss_pred CCCCCCcCcccccCCC---CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcccccC
Q 028459 105 DLEREDECGICLEPCT---KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRVNS 158 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~---~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~~~ 158 (208)
+...+..|+||++.+. ..+.++|||.||..|+.+|+..+.+||+||.++....+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 3455678999998875 34667799999999999999888899999999875443
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=2.3e-14 Score=97.22 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=43.2
Q ss_pred CCCCcCcccccCCCCc-------eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999988765 778899999999999999888999999998864
No 3
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.3e-14 Score=94.88 Aligned_cols=49 Identities=29% Similarity=0.679 Sum_probs=44.5
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..++..|+||++.+.+++.++|||.||..|+.+|+..+..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3456789999999999988889999999999999988899999999886
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=1.1e-13 Score=89.44 Aligned_cols=48 Identities=27% Similarity=0.758 Sum_probs=40.5
Q ss_pred CCCCcCcccccCCCC---cee-cCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTK---MVL-PNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~---~vl-~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+++.+|+||++.+.. .+. ++|||.||..|+.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 445689999998876 444 459999999999999999999999998763
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=94.41 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=45.0
Q ss_pred CCCCCCcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 105 DLEREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
+.+++..|+||++.+.+++.. +|||.||..||.+|+..+..||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345667999999999988764 8999999999999998889999999998643
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=91.61 Aligned_cols=51 Identities=33% Similarity=0.751 Sum_probs=44.3
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC---CCCCCCCCCcCccc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFCRGSMKR 155 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~---~~~~CP~CR~~~~~ 155 (208)
+..++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456789999999999998889999999999999986 45699999998863
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6e-14 Score=94.38 Aligned_cols=50 Identities=26% Similarity=0.736 Sum_probs=43.2
Q ss_pred CCCCCCcCcccccCCCCc-------eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~-------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
...++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345667899999987765 77889999999999999988889999999875
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=96.19 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=45.0
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+.+....|+||++.+.++++++|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34556789999999999999999999999999999988889999999885
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=94.02 Aligned_cols=52 Identities=27% Similarity=0.514 Sum_probs=44.0
Q ss_pred CCCCCCCCcCcccccCCCCceecC-CCCcccHhhHHHHcCCC--CCCCCCCcCcc
Q 028459 103 SADLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTKS--ESCPFCRGSMK 154 (208)
Q Consensus 103 ~~~~~~~~~C~ICle~~~~~vl~~-C~H~Fc~~Ci~~w~~~~--~~CP~CR~~~~ 154 (208)
..+..++..|+||++.+.+++.++ |||.||..||.+|+..+ ..||+||+++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 334456789999999999998888 99999999999997644 69999999754
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=95.59 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=40.1
Q ss_pred CCCcCcccccCCCC---------------ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK---------------MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~---------------~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
++..|+||++.+.. .++++|||.||..||.+|+..+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45679999988754 256679999999999999999999999999875
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=3.6e-13 Score=93.12 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=43.3
Q ss_pred CCCCCCCcCcccccCCCCc---eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 104 ADLEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 104 ~~~~~~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.....+.+|+||++.+..+ ..++|||.||..||.+|+..+.+||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 3345667999999988643 445799999999999999988999999999864
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=9.1e-14 Score=106.69 Aligned_cols=48 Identities=35% Similarity=0.827 Sum_probs=43.9
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++..|+||++.+.+++.++|||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 346799999999999999999999999999999999999999998863
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=90.68 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=43.3
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHc-CCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~~~ 154 (208)
..++..|+||++.+.+++.++|||.||..|+.+|+ ..+..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 35567899999999998888999999999999998 45679999999886
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=1.7e-13 Score=88.41 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=40.8
Q ss_pred CCCcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.+.+|+||++.+.+ ++.++|||.||..|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999998754 677789999999999999888899999998874
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.5e-13 Score=91.45 Aligned_cols=48 Identities=29% Similarity=0.827 Sum_probs=42.6
Q ss_pred CCCcCcccccCCCCc-eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 446899999999875 777899999999999999888999999999864
No 16
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-13 Score=92.82 Aligned_cols=50 Identities=28% Similarity=0.649 Sum_probs=41.7
Q ss_pred CCCCCcCcccccCCCCc---eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
...+..|+||++.+..+ ..++|||.||..||.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45567899999988753 333799999999999999888899999998864
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=3.4e-13 Score=93.23 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
..++..|+||++.+.+++.++|||.||..||.+|+.. +.+||.||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4566899999999999998899999999999999876 789999999885
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=7.2e-14 Score=92.63 Aligned_cols=48 Identities=27% Similarity=0.777 Sum_probs=41.7
Q ss_pred CCCcCcccccCCCCc-------eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~-------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||+++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 346899999987754 677899999999999999888999999998863
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=92.47 Aligned_cols=52 Identities=33% Similarity=0.699 Sum_probs=44.0
Q ss_pred CCCCCCCcCcccccCCCC----ceecCCCCcccHhhHHHHcCCC---CCCCCCCcCccc
Q 028459 104 ADLEREDECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 155 (208)
Q Consensus 104 ~~~~~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~~~~~ 155 (208)
....+..+|+||++.+.. ++.++|||.||..|+.+|+..+ ..||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344566899999999887 8888899999999999997654 799999998763
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=91.87 Aligned_cols=49 Identities=35% Similarity=0.965 Sum_probs=43.7
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
..++..|+||++.+.+ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456789999999988 777799999999999999999999999998874
No 21
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-13 Score=96.44 Aligned_cols=49 Identities=31% Similarity=0.606 Sum_probs=41.9
Q ss_pred CCCCCcCcccccCCCC---ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.+.+..|+||++.+.. .+.++|||.||..||.+|+..+.+||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3456789999988775 555669999999999999999999999998875
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=92.45 Aligned_cols=51 Identities=33% Similarity=0.665 Sum_probs=44.3
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-------CCCCCCCCcCccc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-------SESCPFCRGSMKR 155 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-------~~~CP~CR~~~~~ 155 (208)
+..++..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34567899999999999888899999999999999765 5699999998863
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-13 Score=94.03 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=41.8
Q ss_pred CCCCCcCcccccCCCCc---eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..++.+|+||++.+..+ ..++|||.||..|+.+|+..+.+||+||+++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 34567899999887754 55679999999999999988899999999885
No 24
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.33 E-value=8.2e-13 Score=97.70 Aligned_cols=47 Identities=30% Similarity=0.644 Sum_probs=39.4
Q ss_pred CCcCcccccCCCCce------------------ecCCCCcccHhhHHHHc-----CCCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMV------------------LPNCCHAMCIKCYRNWN-----TKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~v------------------l~~C~H~Fc~~Ci~~w~-----~~~~~CP~CR~~~~~ 155 (208)
+..|+||++.+..+. +++|||.||..||.+|+ ..+.+||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999998875432 67899999999999998 567799999998864
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=1.6e-12 Score=90.56 Aligned_cols=51 Identities=29% Similarity=0.604 Sum_probs=44.2
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC------CCCCCCCCcCccc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKR 155 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~~~~ 155 (208)
+..++..|+||++.+.+++.++|||.||..|+.+|+.. ...||.||.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34567899999999999988889999999999999655 6799999998863
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2e-12 Score=85.73 Aligned_cols=45 Identities=36% Similarity=0.771 Sum_probs=39.5
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC---CCCCCCCC
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT---KSESCPFC 149 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~---~~~~CP~C 149 (208)
..+++..|+||++.+.+++.++|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999998889999999999999976 55689998
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=83.60 Aligned_cols=45 Identities=33% Similarity=0.892 Sum_probs=39.1
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHH---cCCCCCCCCC
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNW---NTKSESCPFC 149 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w---~~~~~~CP~C 149 (208)
...++..|+||++.+.+++.++|||.||..||.+| ......||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34566799999999999988899999999999999 4466799998
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=89.10 Aligned_cols=51 Identities=35% Similarity=0.732 Sum_probs=44.3
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC------CCCCCCCCcCccc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK------SESCPFCRGSMKR 155 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~~~~ 155 (208)
+..++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34566899999999999888899999999999999655 7799999998863
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=4.6e-13 Score=97.34 Aligned_cols=47 Identities=34% Similarity=0.887 Sum_probs=42.4
Q ss_pred CCCcCcccccCCCCcee-cCCCCcccHhhHHHHcCCC-CCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl-~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~~~ 154 (208)
++..|+||++.+.+++. ++|||.||..||.+|+..+ ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 34689999999999988 8999999999999998776 69999999885
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=93.29 Aligned_cols=51 Identities=25% Similarity=0.503 Sum_probs=43.4
Q ss_pred CCCCCCCcCcccccCCCCceecC-CCCcccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 104 ADLEREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 104 ~~~~~~~~C~ICle~~~~~vl~~-C~H~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
.+..++..|+||++.+.+++.++ |||.||..||.+|+. ....||.||.++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34466789999999999998888 999999999999974 3469999998863
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=94.03 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=42.9
Q ss_pred CCCcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++..|+||++.+.+++.. +|||.||..|+.+|+..+..||.||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999998766 899999999999999988999999998863
No 32
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.27 E-value=2.7e-12 Score=94.63 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=40.2
Q ss_pred CCCcCcccccCCCCc------------------eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKM------------------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~------------------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
++..|+||++.+..+ ++++|||.||..||.+|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 356899999887643 45689999999999999999999999999865
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=1.9e-12 Score=95.00 Aligned_cols=49 Identities=20% Similarity=0.524 Sum_probs=44.2
Q ss_pred CCCCcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.++..|+||++.+.+++.+ +|||.||..||.+|+..+..||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4557899999999998876 899999999999999988999999998864
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=86.06 Aligned_cols=47 Identities=19% Similarity=0.576 Sum_probs=38.5
Q ss_pred CCcCccccc-CCCCc----eecCCCCcccHhhHHHHc-CCCCCCCCCCcCccc
Q 028459 109 EDECGICLE-PCTKM----VLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle-~~~~~----vl~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~~~~ 155 (208)
+..|+||++ .+.++ +.++|||.||..|+.+|. ..+..||.||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 66554 467899999999999994 455789999998864
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=97.70 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=42.3
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
.++..|+||++.+.+++.++|||.||..||.+|+.. ...||.||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 345789999999999998899999999999999764 459999999886
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=5.7e-12 Score=89.07 Aligned_cols=50 Identities=18% Similarity=-0.016 Sum_probs=45.2
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+..++..|+||++.+.+++.++|||+||..||.+|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567899999999999999999999999999999887889999998885
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=2.4e-12 Score=96.72 Aligned_cols=50 Identities=26% Similarity=0.746 Sum_probs=44.0
Q ss_pred CCCCcCcccccCCCCc-------eecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 107 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
.++.+|+||++.+.++ +.++|||.||..||.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3457899999998776 8888999999999999999999999999988743
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.23 E-value=1.5e-11 Score=89.20 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=45.6
Q ss_pred CCCCCCcCcccccCCCCceecCCC-CcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~-H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+..++..|+||++.+.++|.++|| |+||..||.+|+....+||+||.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 345678999999999999999999 99999999999988889999999885
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.22 E-value=1.2e-11 Score=90.16 Aligned_cols=49 Identities=16% Similarity=-0.034 Sum_probs=45.1
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..++..|+||++.+.+|+.++|||+||..||.+|+..+.+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 4567899999999999999899999999999999988889999999885
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=2.5e-12 Score=95.35 Aligned_cols=48 Identities=38% Similarity=0.828 Sum_probs=42.9
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
.++..|+||++.+.+++.++|||.||..||.+|+.. ...||.||.++.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 445789999999999988899999999999999876 668999999886
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=2.7e-11 Score=88.89 Aligned_cols=46 Identities=30% Similarity=0.737 Sum_probs=40.7
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCC---CCCCCCCcCccc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS---ESCPFCRGSMKR 155 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~---~~CP~CR~~~~~ 155 (208)
..|+||++.+.+++.++|||.||..|+.+|+..+ ..||.||.++..
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4799999999998888999999999999997654 489999998863
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.18 E-value=4.2e-11 Score=83.38 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=39.4
Q ss_pred CCCCCcCcccccCCC--CceecC--CCCcccHhhHHHHc-CCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPCT--KMVLPN--CCHAMCIKCYRNWN-TKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~~--~~vl~~--C~H~Fc~~Ci~~w~-~~~~~CP~CR~~~~~ 155 (208)
.+++.+|+||++.+. ++...+ |||.||..|+.++. .....||.||+++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456679999999874 334433 99999999999875 446789999998864
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=5.8e-12 Score=94.01 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=44.0
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCC-CCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~~~ 154 (208)
..+++..|+||++.+.+++.++|||.||..||.+|+..+. +||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 3456679999999999998889999999999999987654 9999999886
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.1e-11 Score=80.73 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=39.5
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.++..|+||++.+.+++.++|||.||..|+.+| ...||+||+++.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 455789999999999988889999999999873 568999999886
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.17 E-value=6.8e-12 Score=84.02 Aligned_cols=48 Identities=21% Similarity=0.590 Sum_probs=42.4
Q ss_pred CCCcCcccccCCCCceec--CCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~--~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++.+|.||++...+++.. +|||. ||..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999988765 89999 8999999998888899999998863
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=95.90 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=43.0
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCC-CCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~~~~ 155 (208)
.++..|+||++.+.+++.++|||.||..||.+|+.... .||.||.++..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 34578999999999999999999999999999987554 89999998863
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=8.2e-12 Score=98.26 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=42.1
Q ss_pred CCCCcCcccccCCCCceec-CCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
.++..|+||++.+.+++.+ +|||.||..||.+|+.. +..||.||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4456899999999998765 89999999999999876 778999999885
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.13 E-value=1.1e-11 Score=91.91 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=43.3
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~~ 155 (208)
.++..|+||++.+.+++.++|||.||..||.+|+.. +.+||.||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345789999999999998999999999999999875 6799999998863
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=1.4e-11 Score=82.27 Aligned_cols=48 Identities=21% Similarity=0.538 Sum_probs=41.6
Q ss_pred CCCcCcccccCCCCceec--CCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMVLP--NCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~--~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.+..|.||++...++++. +|||. ||..|+.+|...+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 346899999998887655 89998 9999999998778899999999863
No 50
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=1e-11 Score=93.05 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=0.9
Q ss_pred CCCcCcccccCCCCc------------------eecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKM------------------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~------------------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.++.|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 346899999887642 33579999999999999999999999999865
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.09 E-value=1.4e-11 Score=95.04 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=44.0
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCC-CCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~~~ 154 (208)
..+++..|+||++.+.+++.++|||.||..||.+|+..+. .||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4466789999999999999999999999999999987554 8999999874
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=1.2e-11 Score=92.89 Aligned_cols=49 Identities=27% Similarity=0.773 Sum_probs=42.7
Q ss_pred CCCCcCcccccCCCCc-------eecCCCCcccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKM-------VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-------vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++...|+||++.+..+ +.++|||.||..|+.+|+..+++||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4567899999887654 778899999999999999999999999998863
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=3e-11 Score=89.94 Aligned_cols=45 Identities=22% Similarity=0.512 Sum_probs=40.7
Q ss_pred CCCcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
++..|+||++.+.+++.+ +|||.||..||..|+. ..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 346899999999999887 8999999999999987 78999999875
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=2.9e-11 Score=83.09 Aligned_cols=43 Identities=28% Similarity=0.745 Sum_probs=39.2
Q ss_pred CCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+..|+||++.+.+++..+|||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3589999999999998899999 999999998 899999998864
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=1e-10 Score=98.10 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=43.7
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
+......|+||++.+.+||.++|||+||..||.+|+.. +.+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999999999999999999999999999764 445999999885
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.05 E-value=8e-11 Score=104.37 Aligned_cols=47 Identities=34% Similarity=0.892 Sum_probs=43.0
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcC-CCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-KSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~-~~~~CP~CR~~~~~ 155 (208)
..+|+||++.+.+++.++|||.||..|+.+|.. .+.+||+||.++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 368999999999999999999999999999987 77899999998874
No 57
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=80.66 Aligned_cols=48 Identities=23% Similarity=0.602 Sum_probs=38.7
Q ss_pred CCCCcCcccccCCC--CceecCCC-----CcccHhhHHHHcCCC--CCCCCCCcCcc
Q 028459 107 EREDECGICLEPCT--KMVLPNCC-----HAMCIKCYRNWNTKS--ESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~--~~vl~~C~-----H~Fc~~Ci~~w~~~~--~~CP~CR~~~~ 154 (208)
.++..|.||++.+. .++..+|+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45578999998764 34556796 999999999997654 59999999885
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-09 Score=75.24 Aligned_cols=49 Identities=18% Similarity=0.454 Sum_probs=40.7
Q ss_pred CCCCcCcccccCCCCc-eecCCCCcccHhhHHHHcCCC--CCCCCCCcCccc
Q 028459 107 EREDECGICLEPCTKM-VLPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMKR 155 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~-vl~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~~~~ 155 (208)
+...+|+||.+.+... ..+.|+|.||..||.+|+..+ .+||+||.++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4457899999988754 334799999999999998876 799999988763
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.97 E-value=1.6e-10 Score=91.24 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=43.9
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCC-CCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS-ESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~~~ 154 (208)
..+++..|+||++.+.+++.++|||.||..|+.+|+..+ .+||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 446678999999999999999999999999999997654 49999998885
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=5.7e-10 Score=75.52 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=40.1
Q ss_pred CCCCCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
.+++..|.||++...++++.+|||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3456789999999999999999999 99999985 4799999999864
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=2.7e-10 Score=81.77 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.5
Q ss_pred CCCCcCcccccCCCCceecC-CCCcccHhhHHHHcCC------CCCCCC--CCcC-cc
Q 028459 107 EREDECGICLEPCTKMVLPN-CCHAMCIKCYRNWNTK------SESCPF--CRGS-MK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~-C~H~Fc~~Ci~~w~~~------~~~CP~--CR~~-~~ 154 (208)
..+..|+||++.+.+||.++ |||+||..||.+|+.. ..+||. |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 45678999999999999985 9999999999999754 359999 9866 53
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.3e-10 Score=76.81 Aligned_cols=43 Identities=28% Similarity=0.757 Sum_probs=37.8
Q ss_pred CCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 109 EDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
+..|+||++.+.++++++|||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3579999999999999899999 99999975 3789999998864
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.86 E-value=5e-10 Score=77.99 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=38.1
Q ss_pred CcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 110 DECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
..|+||++...++++.+|||. ||..|+..| ..||+||.++..
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 479999999999999899999 999999887 399999999874
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.86 E-value=1.1e-09 Score=87.70 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=43.7
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC-CCCCCCCCcCcc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK-SESCPFCRGSMK 154 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~~~ 154 (208)
+......||||++.+.+||.++|||+||..||..|+.. +.+||+||.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34567899999999999999999999999999999754 347999998885
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=6.7e-09 Score=87.37 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=41.9
Q ss_pred CCCCCcCcccccCCCCcee-cCCCCcccHhhHHHHcCCC--CCCCC--CCcCcc
Q 028459 106 LEREDECGICLEPCTKMVL-PNCCHAMCIKCYRNWNTKS--ESCPF--CRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl-~~C~H~Fc~~Ci~~w~~~~--~~CP~--CR~~~~ 154 (208)
...+..||||++.+.+||. ..|||+||..||.+|+..+ .+||. ||..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456789999999999997 4899999999999997653 47999 998775
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=1e-08 Score=73.22 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=35.0
Q ss_pred CCCcCcccccCCCCcee---cCCCCcccHhhHHHHcC--------CCCCCCC--CCcC
Q 028459 108 REDECGICLEPCTKMVL---PNCCHAMCIKCYRNWNT--------KSESCPF--CRGS 152 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl---~~C~H~Fc~~Ci~~w~~--------~~~~CP~--CR~~ 152 (208)
+..+|+||++.+..+.. .+|||.||..|+.++.. ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999876533 47999999999988743 1248999 9977
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.67 E-value=4.8e-09 Score=91.95 Aligned_cols=44 Identities=32% Similarity=0.876 Sum_probs=40.1
Q ss_pred CCCcCcccccCCCCceecCCCCc-ccHhhHHHHcCCCCCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMVLPNCCHA-MCIKCYRNWNTKSESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~~~~ 155 (208)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45789999999999999899999 999999998 689999999864
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.54 E-value=1.5e-08 Score=88.16 Aligned_cols=49 Identities=22% Similarity=0.598 Sum_probs=37.8
Q ss_pred CCCCCcCcccccCCCC-cee-------cCCCCcccHhhHHHHcCCC-----------CCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTK-MVL-------PNCCHAMCIKCYRNWNTKS-----------ESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~-~vl-------~~C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~~~ 154 (208)
.+...+|+||++.+.. +.+ ++|||.||..|+.+|+... ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456799999987664 222 4799999999999996431 37999999885
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=2.2e-08 Score=66.31 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=41.4
Q ss_pred CcCcccccCCCCceec-CCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLP-NCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~-~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+||++.+.+++.. +|||+|+..||.+|+..+.+||+.+.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999999887 89999999999999877778999999886
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.46 E-value=6.5e-08 Score=63.79 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=37.0
Q ss_pred CCCCcCcccccCCCCceecCCC--C---cccHhhHHHHcC--CCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCC--H---AMCIKCYRNWNT--KSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~--H---~Fc~~Ci~~w~~--~~~~CP~CR~~~~ 154 (208)
++...|.||++....+...||. | .||..|+.+|+. .+.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4557899999765555556654 4 899999999975 3679999998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=9e-07 Score=63.73 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=38.0
Q ss_pred cCcccccCCCC-ceecCCCCcccHhhHHHHc-CCCCCCCCCCcCccccc
Q 028459 111 ECGICLEPCTK-MVLPNCCHAMCIKCYRNWN-TKSESCPFCRGSMKRVN 157 (208)
Q Consensus 111 ~C~ICle~~~~-~vl~~C~H~Fc~~Ci~~w~-~~~~~CP~CR~~~~~~~ 157 (208)
-|++|--++.. +.+.+|.|.||.+|+..|. ++.++||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 58888777663 4556699999999999996 56789999999998543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.68 E-value=4.2e-05 Score=63.57 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=39.0
Q ss_pred CCCcCcccccCCCCce-ecCCCCcccHhhHHHHcCCC--CCCCCCCcCccc
Q 028459 108 REDECGICLEPCTKMV-LPNCCHAMCIKCYRNWNTKS--ESCPFCRGSMKR 155 (208)
Q Consensus 108 ~~~~C~ICle~~~~~v-l~~C~H~Fc~~Ci~~w~~~~--~~CP~CR~~~~~ 155 (208)
...+|.||.+....+. .++|+|.||..|+..|...+ ..||.|+.+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3568999999887654 45699999999999997654 499999987654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.13 E-value=0.0037 Score=44.34 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCcCcccccC-CCCcee--cCCCCcccHhhHHHH
Q 028459 109 EDECGICLEP-CTKMVL--PNCCHAMCIKCYRNW 139 (208)
Q Consensus 109 ~~~C~ICle~-~~~~vl--~~C~H~Fc~~Ci~~w 139 (208)
+..|+||.+. +.+++. ..|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999975 566666 789999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.73 E-value=0.053 Score=38.36 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=36.8
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
....|..|.-.... .+.-..|..|..|+.-.+..+..||+|..++.
T Consensus 27 G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 44679999855443 33324799999999999999999999999986
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.85 E-value=0.098 Score=34.50 Aligned_cols=47 Identities=21% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCC----CCCCCCCcCc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS----ESCPFCRGSM 153 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~~ 153 (208)
.....|.||.+.-.-..--.|...||..|+...+... =.||.|+...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3446799998654433335699999999998765433 2899997643
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.21 E-value=0.31 Score=34.00 Aligned_cols=52 Identities=23% Similarity=0.613 Sum_probs=38.5
Q ss_pred CCCcCcccccCCCC-------ceecCCCCcccHhhHH-HHcCCCCCCCCCCcCcccccCC
Q 028459 108 REDECGICLEPCTK-------MVLPNCCHAMCIKCYR-NWNTKSESCPFCRGSMKRVNSE 159 (208)
Q Consensus 108 ~~~~C~ICle~~~~-------~vl~~C~H~Fc~~Ci~-~w~~~~~~CP~CR~~~~~~~~~ 159 (208)
....|.||-+..-. ...-.|+--.|..|+. +....++.||.|+...++...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCC
Confidence 44689999876431 2334588888999996 5678889999999999865433
No 77
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.33 E-value=0.18 Score=40.36 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=33.3
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCcCc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSM 153 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~~ 153 (208)
..++..|.+|.....-...-.|...||..|+.+-+.. .=.||.|+..-
T Consensus 4 d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3455789999865433333468899999999765443 23899998654
No 78
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.20 E-value=0.29 Score=38.32 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCcCc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSM 153 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~~ 153 (208)
++..|.+|.+...-...-.|.-.||..|+.+-+.. .=.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999866443344568889999998765443 23799998654
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.90 E-value=0.34 Score=31.14 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=31.7
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC----CCCCCCCCCc
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRG 151 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~----~~~~CP~CR~ 151 (208)
+...+..|.+|.....-..--.|.-.||..|+..-+. ..=.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3455678999987533223346888999999986432 2237999964
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.33 E-value=0.23 Score=31.97 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCcC
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 152 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 152 (208)
..++..|.+|.+...-..--.|...||..|+..-+.. .=.||.|+..
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456789999865433333458889999999854332 2379999754
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.01 E-value=0.33 Score=47.40 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=44.0
Q ss_pred CCCCCcCcccccCCCCceecCCC-CcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVLPNCC-HAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~-H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..++..|||-.+.+.+||..+-| +++-..+|.+|+..+.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 35668899999999999999887 59999999999988889999999886
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.15 E-value=0.13 Score=32.53 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=29.6
Q ss_pred CCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCC
Q 028459 105 DLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCR 150 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR 150 (208)
...++..|.+|.....-..--.|...||..|+.+-+.. .=.||.|+
T Consensus 5 ~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred cCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34556789999876433333468889999998753322 12577664
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.05 E-value=2 Score=32.45 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=33.3
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHcC-----------CCCCCCCCCc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT-----------KSESCPFCRG 151 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~-----------~~~~CP~CR~ 151 (208)
...+..|.+|.+...-..--.|--.||..|+.+-+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345678999998765444456899999999986543 2237999963
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.01 E-value=1.2 Score=31.01 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCCCCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCcC
Q 028459 104 ADLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 152 (208)
Q Consensus 104 ~~~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 152 (208)
....++..|.+|.....-..--.|.-.||..|+.+=+.. .=.||.|+..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 334566789999976433333457888999999765433 2279999753
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.92 E-value=2.4 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCCCCcCcccccCCCCceec--CCCCcccHhhHHHH
Q 028459 106 LEREDECGICLEPCTKMVLP--NCCHAMCIKCYRNW 139 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~--~C~H~Fc~~Ci~~w 139 (208)
...+..|.||-.--.....+ -|+-+||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 45678899997332222111 28999999999986
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.34 E-value=0.89 Score=31.17 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=25.1
Q ss_pred CCCCcCcccccCCCCceecCC----CCcccHhhHHHHc
Q 028459 107 EREDECGICLEPCTKMVLPNC----CHAMCIKCYRNWN 140 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C----~H~Fc~~Ci~~w~ 140 (208)
.....|.+|.|..++.-.-.| +|.||..|-+...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHH
Confidence 455789999999886422223 8999999987763
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.39 E-value=3.1 Score=30.90 Aligned_cols=46 Identities=22% Similarity=0.441 Sum_probs=31.9
Q ss_pred CCCCCcCcccccCCCCceecCCCCcccHhhHHHHc-----------CCCCCCCCCCc
Q 028459 106 LEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWN-----------TKSESCPFCRG 151 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~-----------~~~~~CP~CR~ 151 (208)
...+..|.+|-+...-..--.|-..||..|+.+-+ ...=.|+.|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34556799999765533334689999999998642 12238999953
No 88
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=77.93 E-value=0.37 Score=32.72 Aligned_cols=20 Identities=25% Similarity=0.835 Sum_probs=17.2
Q ss_pred CCCCcccHhhHHHHcCCCCCCC
Q 028459 126 NCCHAMCIKCYRNWNTKSESCP 147 (208)
Q Consensus 126 ~C~H~Fc~~Ci~~w~~~~~~CP 147 (208)
.|||.||..|-..|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999999977 5664
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.91 E-value=0.62 Score=30.32 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRG 151 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 151 (208)
.++..|.||.+...-..--.|.-.||..|+.+-+.. .=.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999975433333468889999999753322 226999964
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.41 E-value=1.4 Score=31.38 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=29.7
Q ss_pred CCCCcCcccccCCCC---ceecCCCCcccHhhHHHHcC----CCCCCCCCC
Q 028459 107 EREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNT----KSESCPFCR 150 (208)
Q Consensus 107 ~~~~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~----~~~~CP~CR 150 (208)
.++..|.||.+.... ..-..|+..||..|+..... ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999866543 33357999999999987643 222566653
No 91
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.37 E-value=5.5 Score=31.21 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=30.8
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcC----CCCCCCCCCcCc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT----KSESCPFCRGSM 153 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~----~~~~CP~CR~~~ 153 (208)
+..|.+|.+...-...-.|.-.||..|+.+=+. ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 357999986654334446888999999975432 223799998653
No 92
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.30 E-value=0.94 Score=28.78 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=30.4
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCC----CCCCCCCCcC
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 152 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 152 (208)
.++..|.+|.....-..--.|.-.||..|+.+-+.. .-.||.|+..
T Consensus 3 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 345689999875433333468889999999853322 2268888643
No 93
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.59 E-value=3.8 Score=30.54 Aligned_cols=61 Identities=18% Similarity=0.412 Sum_probs=37.3
Q ss_pred CCCCcCcccccCCC-----CceecCCCCcccHhhHHHHcCC----CCCCCCCCcCcccccCCCceeecCC
Q 028459 107 EREDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTK----SESCPFCRGSMKRVNSEDLWVLTCT 167 (208)
Q Consensus 107 ~~~~~C~ICle~~~-----~~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~~~~~~~~~~~~~~~~ 167 (208)
..+..|.+|...+. ...-..|.|.+|.+|-..-... .=.|-+|+..-.....+.-|.+...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~ 122 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGF 122 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcC
Confidence 34578999998874 1255679999999996542111 1157777654433344455665543
No 94
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.58 E-value=3.5 Score=26.41 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=28.7
Q ss_pred CcCcccccCCCCc---eecCCCCcccHhhHHHHcCCCCCCCCC
Q 028459 110 DECGICLEPCTKM---VLPNCCHAMCIKCYRNWNTKSESCPFC 149 (208)
Q Consensus 110 ~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~~~~~CP~C 149 (208)
..|-.|...+.+. .-+.|++.||.+|=.=-.+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3588888777543 257899999999954334455689988
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.79 E-value=4.6 Score=24.39 Aligned_cols=41 Identities=24% Similarity=0.594 Sum_probs=26.1
Q ss_pred cCcccccCCC--Cc-eecCCCCcccHhhHHHHcCC----CCCCCCCCc
Q 028459 111 ECGICLEPCT--KM-VLPNCCHAMCIKCYRNWNTK----SESCPFCRG 151 (208)
Q Consensus 111 ~C~ICle~~~--~~-vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~ 151 (208)
.|.||..... .. .--.|...||..|+.+=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888875432 22 22468889999999753322 226998864
No 96
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=68.38 E-value=6.1 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCCCCcCcccccCCCCceec--CCCCcccHhhHHHHcCCC----------CCCCCCC
Q 028459 106 LEREDECGICLEPCTKMVLP--NCCHAMCIKCYRNWNTKS----------ESCPFCR 150 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl~--~C~H~Fc~~Ci~~w~~~~----------~~CP~CR 150 (208)
+..+..|.+|-+...-...- .|...||..||...++.. =.|=+|.
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 44566788888765433333 699999999999986533 2788885
No 97
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=67.91 E-value=1.7 Score=31.23 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=16.6
Q ss_pred ecCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 124 LPNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 124 l~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
..+||+.|. .-......||.|++.-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 345999981 2234567999998643
No 98
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.69 E-value=4.8 Score=27.65 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCCCCCcCcccccCCC---Cc--eecCCCCcccHhhHHHHc--CCCCCCCCCCcC
Q 028459 105 DLEREDECGICLEPCT---KM--VLPNCCHAMCIKCYRNWN--TKSESCPFCRGS 152 (208)
Q Consensus 105 ~~~~~~~C~ICle~~~---~~--vl~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~~ 152 (208)
..+++..|.||..... .. .--.|.-.||..|+..-. ...=.||.|...
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 3456788999996541 12 224688899999997532 123378888643
No 99
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=67.59 E-value=1.6 Score=28.87 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCCcCcccccCCCC--ce-ecCCCCcccHhhHHHHcC----CCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTK--MV-LPNCCHAMCIKCYRNWNT----KSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~--~v-l~~C~H~Fc~~Ci~~w~~----~~~~CP~CR~~~~ 154 (208)
.+...|.+|...... .+ --.|.-.||..|+..-.. ..-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 444579999865332 22 235888999999975432 2347999976554
No 100
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.21 E-value=1.5 Score=28.15 Aligned_cols=33 Identities=33% Similarity=0.744 Sum_probs=21.3
Q ss_pred CcCcccccCCCC------ceecC--CCCcccHhhHHHHcCC
Q 028459 110 DECGICLEPCTK------MVLPN--CCHAMCIKCYRNWNTK 142 (208)
Q Consensus 110 ~~C~ICle~~~~------~vl~~--C~H~Fc~~Ci~~w~~~ 142 (208)
..||-|.-.++. ..-.. |+|.||..|..+|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 468888766553 12233 7888888888777544
No 101
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.67 E-value=5.5 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCCcCcccccCCCC----ceecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w 139 (208)
+...|.+|...|.. ---..||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34579999987763 233569999999997654
No 102
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.50 E-value=3.9 Score=27.60 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCcCcccccCCCCc----eecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTKM----VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w 139 (208)
+...|.+|...|... --..||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345799999887632 33569999999997653
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.00 E-value=3.4 Score=30.28 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCcCcccccCCCCc----eecCCCCcccHhhHHH
Q 028459 109 EDECGICLEPCTKM----VLPNCCHAMCIKCYRN 138 (208)
Q Consensus 109 ~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~ 138 (208)
...|.+|...|... --..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35799999887632 3346999999999654
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.94 E-value=7 Score=26.41 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=24.0
Q ss_pred CCCCcCcccccCCCCc----eecCCCCcccHhhHHHH
Q 028459 107 EREDECGICLEPCTKM----VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w 139 (208)
.+...|.+|...|... ---.||+.||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3446899999887632 33469999999997553
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=64.52 E-value=14 Score=24.10 Aligned_cols=46 Identities=20% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCCCcCcccccCCCC-cee-cC--CC-CcccHhhHHHHc--CCCCCCCCCCcCc
Q 028459 107 EREDECGICLEPCTK-MVL-PN--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 153 (208)
Q Consensus 107 ~~~~~C~ICle~~~~-~vl-~~--C~-H~Fc~~Ci~~w~--~~~~~CP~CR~~~ 153 (208)
.+...| ||...... .+. -+ |. ..||..|+.--. ...-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 345567 89864332 222 23 65 689999986211 1233799997644
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.18 E-value=4.7 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.536 Sum_probs=22.5
Q ss_pred CCCcCcccccCCCCc----eecCCCCcccHhhHHH
Q 028459 108 REDECGICLEPCTKM----VLPNCCHAMCIKCYRN 138 (208)
Q Consensus 108 ~~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~ 138 (208)
+...|.+|...|... ---.||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345799999887632 2346999999999543
No 107
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=63.91 E-value=5.7 Score=30.53 Aligned_cols=45 Identities=22% Similarity=0.611 Sum_probs=30.9
Q ss_pred CCCCCcCcccccCCCCcee--cCCCCcccHhhHHHHcCCCC----------CCCCCC
Q 028459 106 LEREDECGICLEPCTKMVL--PNCCHAMCIKCYRNWNTKSE----------SCPFCR 150 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl--~~C~H~Fc~~Ci~~w~~~~~----------~CP~CR 150 (208)
+..+..|.||-+...-..- ++|...||..||..+.+... .|=+|.
T Consensus 76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 3455689998865432222 25889999999999866421 688885
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.25 E-value=6 Score=28.31 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=27.5
Q ss_pred CCCCCcCcccccCCCCcee-c--CCCCcccHhhHHHHcCC----CCCCCCCCcCcc
Q 028459 106 LEREDECGICLEPCTKMVL-P--NCCHAMCIKCYRNWNTK----SESCPFCRGSMK 154 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~~vl-~--~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~~~ 154 (208)
..++..|.+|.+.. +.+. - .|-..||..|+. +.. .=.||.|+..+.
T Consensus 12 ~~~~~~C~~C~~~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDGG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCCS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCCC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 34567899998542 2222 2 477899999986 222 125776654443
No 109
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.74 E-value=6 Score=27.11 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCCcCcccccCCCCc----eecCCCCcccHhhHHHH
Q 028459 107 EREDECGICLEPCTKM----VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w 139 (208)
.+...|.+|...|... --..||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3445899999887632 23469999999997653
No 110
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.36 E-value=4 Score=26.72 Aligned_cols=33 Identities=27% Similarity=0.566 Sum_probs=24.5
Q ss_pred CCCCcCcccccCCCCceecCC-CCcccHhhHHHHc
Q 028459 107 EREDECGICLEPCTKMVLPNC-CHAMCIKCYRNWN 140 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C-~H~Fc~~Ci~~w~ 140 (208)
++..-|.||.++-.-. -..| |-.||..|..+-.
T Consensus 6 ee~pWC~ICneDAtlr-C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATLR-CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCEE-ETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeEE-ecCCCCceehHHHHHHHc
Confidence 4556799999985433 3458 7899999988753
No 111
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.76 E-value=3.9 Score=31.20 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=29.9
Q ss_pred CCCcCcccccCCC-----CceecCCCCcccHhhHHHHcCC--CCCCCCCCcC
Q 028459 108 REDECGICLEPCT-----KMVLPNCCHAMCIKCYRNWNTK--SESCPFCRGS 152 (208)
Q Consensus 108 ~~~~C~ICle~~~-----~~vl~~C~H~Fc~~Ci~~w~~~--~~~CP~CR~~ 152 (208)
.+..|.+|...+. ..+-..|.|.+|..|- .|... .=.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 4679999998754 2355779999999996 23322 1257777544
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.22 E-value=2.5 Score=29.30 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCCCCCCcCcccccCCCC---ceecCCCCcccHhhHHHHcCC----CCCCCCCCcC
Q 028459 103 SADLEREDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTK----SESCPFCRGS 152 (208)
Q Consensus 103 ~~~~~~~~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~~----~~~CP~CR~~ 152 (208)
..+..++..|.||...-.. ..--.|...||..|+.+=+.. .=.||.|+..
T Consensus 10 ~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3344556789999865431 222358889999999743322 2269999653
No 113
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.47 E-value=5.8 Score=26.07 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=21.6
Q ss_pred CcCcccccCCCCc----eecCCCCcccHhhHHH
Q 028459 110 DECGICLEPCTKM----VLPNCCHAMCIKCYRN 138 (208)
Q Consensus 110 ~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~ 138 (208)
..|.+|...|... --..||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999887632 2346999999999643
No 114
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=58.82 E-value=1.7 Score=37.02 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCCCcCcccccCCCCceec----CCC--CcccHhhHHHHcCCCCCCCCCCcC
Q 028459 107 EREDECGICLEPCTKMVLP----NCC--HAMCIKCYRNWNTKSESCPFCRGS 152 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~----~C~--H~Fc~~Ci~~w~~~~~~CP~CR~~ 152 (208)
+....||+|-....-.++. .=| |..|.-|-.+|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5567999998765543332 234 567999999999889999999764
No 115
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.42 E-value=16 Score=25.25 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCCcCcccccCCCC-cee-cC--CC-CcccHhhHHHHc--CCCCCCCCCCcCc
Q 028459 108 REDECGICLEPCTK-MVL-PN--CC-HAMCIKCYRNWN--TKSESCPFCRGSM 153 (208)
Q Consensus 108 ~~~~C~ICle~~~~-~vl-~~--C~-H~Fc~~Ci~~w~--~~~~~CP~CR~~~ 153 (208)
+...| ||...... .+. -+ |. ..||..|+.--. ...-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 44567 99864332 211 23 55 689999986211 1234799997644
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=55.98 E-value=6.2 Score=28.83 Aligned_cols=43 Identities=19% Similarity=0.543 Sum_probs=27.9
Q ss_pred CCcCcccccCCCCc----eecCCCCcccHhhHHHHcCCCCCCCCCCc
Q 028459 109 EDECGICLEPCTKM----VLPNCCHAMCIKCYRNWNTKSESCPFCRG 151 (208)
Q Consensus 109 ~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~ 151 (208)
...|..|...|... --.+||..||..|..........|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 35799999888732 33569999999997654433456766643
No 117
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.89 E-value=5.2 Score=32.20 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCcCcccccCCCCc----eecCCCCcccHhhHHHH
Q 028459 109 EDECGICLEPCTKM----VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 109 ~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~w 139 (208)
+..|.+|...|... -...||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999887632 33569999999997543
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.66 E-value=5.1 Score=31.94 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCcCcccccCCCCc----eecCCCCcccHhhHHH
Q 028459 109 EDECGICLEPCTKM----VLPNCCHAMCIKCYRN 138 (208)
Q Consensus 109 ~~~C~ICle~~~~~----vl~~C~H~Fc~~Ci~~ 138 (208)
+..|.+|...|... -...||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 46899999887632 3356999999999654
No 119
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=55.57 E-value=7.4 Score=27.15 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCcCcccccCCCCc---eecCCCCcccHhhHHHHcC---CCCCCCCCC
Q 028459 109 EDECGICLEPCTKM---VLPNCCHAMCIKCYRNWNT---KSESCPFCR 150 (208)
Q Consensus 109 ~~~C~ICle~~~~~---vl~~C~H~Fc~~Ci~~w~~---~~~~CP~CR 150 (208)
...| ||-...... .--.|.-.||..|+..=.. ..-.||.|+
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 3567 787544332 2245888999999864221 223899996
No 120
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=53.76 E-value=1.2 Score=28.57 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCCCCcCccccc-CCCCc---eecCCCCcccHhhHHHH
Q 028459 106 LEREDECGICLE-PCTKM---VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 106 ~~~~~~C~ICle-~~~~~---vl~~C~H~Fc~~Ci~~w 139 (208)
..+...|.||.. .|.++ .-.-|.-.||..|--.|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 345578999984 45544 11224445666665544
No 121
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=49.92 E-value=1.7 Score=29.65 Aligned_cols=17 Identities=35% Similarity=1.306 Sum_probs=14.6
Q ss_pred eecCCCCcccHhhHHHH
Q 028459 123 VLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 123 vl~~C~H~Fc~~Ci~~w 139 (208)
.-+.|+|.||..|-.+|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 34569999999999999
No 122
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.15 E-value=7.6 Score=24.69 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCCCcCcccccCCC---Cc--eecCCCCcccHhhHHHHc-------CCCCCCCCCCc
Q 028459 107 EREDECGICLEPCT---KM--VLPNCCHAMCIKCYRNWN-------TKSESCPFCRG 151 (208)
Q Consensus 107 ~~~~~C~ICle~~~---~~--vl~~C~H~Fc~~Ci~~w~-------~~~~~CP~CR~ 151 (208)
.++..|.+|..... .. .--.|.-.||..|+..-+ ...=.||.|+.
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 45578999986532 22 224688899999987532 12237888854
No 123
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.02 E-value=37 Score=22.44 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
.....|.-|-+.+...++.--+..||..| ..|-.|+.++.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 44568999998776654544677888877 57899988875
No 124
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.70 E-value=6.7 Score=27.80 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=9.7
Q ss_pred ccHhhHHHHcC
Q 028459 131 MCIKCYRNWNT 141 (208)
Q Consensus 131 Fc~~Ci~~w~~ 141 (208)
||..|+.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999943
No 125
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.66 E-value=6.7 Score=27.75 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=9.8
Q ss_pred ccHhhHHHHcC
Q 028459 131 MCIKCYRNWNT 141 (208)
Q Consensus 131 Fc~~Ci~~w~~ 141 (208)
||..|+.+|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999954
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.23 E-value=30 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCCcCcccccCCC--------C-ceecCCCCcccHhhHHH-------HcCCCCCCCCCC
Q 028459 108 REDECGICLEPCT--------K-MVLPNCCHAMCIKCYRN-------WNTKSESCPFCR 150 (208)
Q Consensus 108 ~~~~C~ICle~~~--------~-~vl~~C~H~Fc~~Ci~~-------w~~~~~~CP~CR 150 (208)
....|.+|+.... + ..-..|+..||..|+.. .....=.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4467999985421 1 12246999999999942 123334666664
No 127
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.12 E-value=5.6 Score=25.23 Aligned_cols=46 Identities=24% Similarity=0.435 Sum_probs=29.3
Q ss_pred CCCCcCcccccCCC---Ccee-cCCCCcccHhhHHHHc-----CCCCCCCCCCcC
Q 028459 107 EREDECGICLEPCT---KMVL-PNCCHAMCIKCYRNWN-----TKSESCPFCRGS 152 (208)
Q Consensus 107 ~~~~~C~ICle~~~---~~vl-~~C~H~Fc~~Ci~~w~-----~~~~~CP~CR~~ 152 (208)
++...|++|..... ..+. -.|...||..|+.--. ...-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 34567999986542 1222 3588899999985321 134579999653
No 128
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.15 E-value=27 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
....|+-|-+.+...++.--+..||..| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 4468999998776555554677888887 47899998874
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.83 E-value=6.1 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCcCcccccCCCC----ceecCCCCcccHhhHHHH
Q 028459 108 REDECGICLEPCTK----MVLPNCCHAMCIKCYRNW 139 (208)
Q Consensus 108 ~~~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w 139 (208)
....|.+|...|.. --...||+.||..|-...
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp ------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 34679999987763 233569999999998764
No 130
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.37 E-value=28 Score=22.70 Aligned_cols=46 Identities=20% Similarity=0.473 Sum_probs=28.8
Q ss_pred CCCCCcCcccccCC---CCc--eecCCCCcccHhhHHHHc--CCCCCCCCCCc
Q 028459 106 LEREDECGICLEPC---TKM--VLPNCCHAMCIKCYRNWN--TKSESCPFCRG 151 (208)
Q Consensus 106 ~~~~~~C~ICle~~---~~~--vl~~C~H~Fc~~Ci~~w~--~~~~~CP~CR~ 151 (208)
..++..|.||.+.. ... .--.|.-.||..|+..-. ...=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35567899998653 122 224688899999997532 12236777753
No 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.27 E-value=42 Score=21.67 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
...|+-|-..+....+.--|..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 357999987776554444677777776 57899988886
No 132
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.21 E-value=31 Score=29.99 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCcCcccccCCCCcee-cCCCCcccHhh--HHHHc--CCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVL-PNCCHAMCIKC--YRNWN--TKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl-~~C~H~Fc~~C--i~~w~--~~~~~CP~CR~~~~ 154 (208)
...||+-...+..++. ..|.|.-|.+- +.+.. ...-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4689998888887755 46999855443 33332 34458999987763
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=38 Score=21.11 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred CcCcccccCCC--CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~--~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+-|-..+. ..++..-|..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 47888988776 345544677788777 46888888775
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=36.07 E-value=34 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCcCcccccCCCCcee-cCCCCcccHh--hHHHHc--CCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVL-PNCCHAMCIK--CYRNWN--TKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl-~~C~H~Fc~~--Ci~~w~--~~~~~CP~CR~~~~ 154 (208)
...||+-...+..|+. ..|.|.-|.+ -+.+.. ...-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4579998888887655 4699984444 333332 33458999988775
No 135
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.33 E-value=35 Score=21.72 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=24.4
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+-|-..+...++.--+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 36777877666554444566777766 46777877664
No 136
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.10 E-value=20 Score=25.66 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=18.3
Q ss_pred eecCCCCcccHhhHHHHcCCCC-CCCCCCcCcccc
Q 028459 123 VLPNCCHAMCIKCYRNWNTKSE-SCPFCRGSMKRV 156 (208)
Q Consensus 123 vl~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~~~~~ 156 (208)
...+|||.|-. ..... .||.|..+...+
T Consensus 75 ~C~~CG~~~e~------~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 75 ECKDCSHVFKP------NALDYGVCEKCHSKNVII 103 (119)
T ss_dssp ECSSSSCEECS------CCSTTCCCSSSSSCCCEE
T ss_pred EcCCCCCEEeC------CCCCCCcCccccCCCcEE
Confidence 33568887754 23456 899998875433
No 137
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.15 E-value=30 Score=24.49 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=32.3
Q ss_pred CcCcccccCCCC---ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|..|-..+.+ .....=|..||..|..+....+..|-.|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 467777766642 233345778999999887665558999998886
No 138
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=32.52 E-value=24 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=19.4
Q ss_pred CCCCcCcccccCCCC---cee-c-CCCCcccHhhH
Q 028459 107 EREDECGICLEPCTK---MVL-P-NCCHAMCIKCY 136 (208)
Q Consensus 107 ~~~~~C~ICle~~~~---~vl-~-~C~H~Fc~~Ci 136 (208)
+....|++|..+..+ .+. - .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345689999976432 222 2 68889999997
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.51 E-value=18 Score=29.28 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=24.0
Q ss_pred CcCcccccCCC--Cc-eecCCCCcccHhhHHHHcCC-----CCCCCCCCc
Q 028459 110 DECGICLEPCT--KM-VLPNCCHAMCIKCYRNWNTK-----SESCPFCRG 151 (208)
Q Consensus 110 ~~C~ICle~~~--~~-vl~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~ 151 (208)
..|.+|...-. .. ..-.|...||..|+.+=+.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35788875322 22 22468889999999853321 236999964
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.86 E-value=34 Score=21.27 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=25.6
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+-|-..+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888887766544444577777776 46888888774
No 141
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.82 E-value=24 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=27.7
Q ss_pred CcCcccccCCCC------ce-ecCCCCcccHhhHHHH------cC-----CCCCCCCCCcCc
Q 028459 110 DECGICLEPCTK------MV-LPNCCHAMCIKCYRNW------NT-----KSESCPFCRGSM 153 (208)
Q Consensus 110 ~~C~ICle~~~~------~v-l~~C~H~Fc~~Ci~~w------~~-----~~~~CP~CR~~~ 153 (208)
..|+||...... .+ .-.|...||..|..-- .. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999854331 22 2358999999997321 11 145899998654
No 142
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.65 E-value=30 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.5
Q ss_pred CCCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
....|+-|-..+....+..-+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3457999988776554444677777777 57899998886
No 143
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=30.82 E-value=16 Score=24.38 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=23.8
Q ss_pred cCcccccCCCCc-ee--cCCCCcccHhhHHHHcCC----C-CCCCCCCc
Q 028459 111 ECGICLEPCTKM-VL--PNCCHAMCIKCYRNWNTK----S-ESCPFCRG 151 (208)
Q Consensus 111 ~C~ICle~~~~~-vl--~~C~H~Fc~~Ci~~w~~~----~-~~CP~CR~ 151 (208)
.|.+|....... .+ -.|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665443322 22 358889999999864322 1 36888864
No 144
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.63 E-value=22 Score=23.66 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=25.5
Q ss_pred CcCcccccCCC--Cce-ecCCCCcccHhhHHHHcCC-----CCCCCCCCc
Q 028459 110 DECGICLEPCT--KMV-LPNCCHAMCIKCYRNWNTK-----SESCPFCRG 151 (208)
Q Consensus 110 ~~C~ICle~~~--~~v-l~~C~H~Fc~~Ci~~w~~~-----~~~CP~CR~ 151 (208)
..|.||..... ..+ --.|...||..|+.+=+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 36788875322 222 2358889999999753221 236888753
No 145
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.59 E-value=9 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCcCcccccCCCCcee--cC--CC-CcccHhhHHHH--cCCCCCCCCCCc
Q 028459 108 REDECGICLEPCTKMVL--PN--CC-HAMCIKCYRNW--NTKSESCPFCRG 151 (208)
Q Consensus 108 ~~~~C~ICle~~~~~vl--~~--C~-H~Fc~~Ci~~w--~~~~~~CP~CR~ 151 (208)
+...| ||........+ -+ |. ..||..|+.-- -...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34456 89864332222 23 55 68999998611 112236887753
No 146
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.05 E-value=22 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=19.0
Q ss_pred CcCcccccCCC---------C-ceecCCCCcccHhhHHH
Q 028459 110 DECGICLEPCT---------K-MVLPNCCHAMCIKCYRN 138 (208)
Q Consensus 110 ~~C~ICle~~~---------~-~vl~~C~H~Fc~~Ci~~ 138 (208)
..|.+|+.... . ..-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 36888885431 1 12246899999999864
No 147
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.82 E-value=34 Score=21.35 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=25.7
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|.-|-+.+...++.--+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 46888887766544443566777776 47888988775
No 148
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.50 E-value=11 Score=23.78 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=24.0
Q ss_pred CCCcCcccccCCCCc-ee-cC--CC-CcccHhhHHHHc--CCCCCCCCCCc
Q 028459 108 REDECGICLEPCTKM-VL-PN--CC-HAMCIKCYRNWN--TKSESCPFCRG 151 (208)
Q Consensus 108 ~~~~C~ICle~~~~~-vl-~~--C~-H~Fc~~Ci~~w~--~~~~~CP~CR~ 151 (208)
+..-| ||....... +. -+ |. ..||..|+.--. ...-.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34456 898643222 22 23 65 699999986211 12236888853
No 149
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.34 E-value=31 Score=21.22 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=25.9
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-+.+....+..-|..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 46888887666544444567777777 47888988775
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.80 E-value=38 Score=21.21 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=25.6
Q ss_pred CcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+-|-+.+.. .++.--+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 468888877663 34443677777777 47888888774
No 151
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.69 E-value=39 Score=21.71 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=26.2
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-+.+....+..-+..||.+| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888887776554444577777766 47888988774
No 152
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.04 E-value=47 Score=22.17 Aligned_cols=31 Identities=23% Similarity=0.563 Sum_probs=21.8
Q ss_pred CCCCCcCcccccCCCC-----ceecCCCCcccHhhH
Q 028459 106 LEREDECGICLEPCTK-----MVLPNCCHAMCIKCY 136 (208)
Q Consensus 106 ~~~~~~C~ICle~~~~-----~vl~~C~H~Fc~~Ci 136 (208)
...+..|+.|.+.+-. .+-..|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3456789999987652 355678888777773
No 153
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.73 E-value=21 Score=23.16 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=24.2
Q ss_pred cCcccccCCCCc-ee--cCCCCcccHhhHHHHcC----C-CCCCCCCCc
Q 028459 111 ECGICLEPCTKM-VL--PNCCHAMCIKCYRNWNT----K-SESCPFCRG 151 (208)
Q Consensus 111 ~C~ICle~~~~~-vl--~~C~H~Fc~~Ci~~w~~----~-~~~CP~CR~ 151 (208)
.|.+|....... ++ -.|...||..|+.+=+. . .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455666432222 22 35888999999975322 1 336888864
No 154
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.62 E-value=20 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=17.4
Q ss_pred eecCCCCcccHhhHHHHcCCCCCCCCCCcCcccc
Q 028459 123 VLPNCCHAMCIKCYRNWNTKSESCPFCRGSMKRV 156 (208)
Q Consensus 123 vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~~~ 156 (208)
....|||.|=.. .....||.|..++.++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 345688877322 2234799998887544
No 155
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.78 E-value=55 Score=20.98 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=26.6
Q ss_pred CcCcccccCCC--CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCT--KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~--~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-..+. ..++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccC
Confidence 47999987776 444444577788777 47888988875
No 156
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.61 E-value=38 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=25.8
Q ss_pred CcCcccccCCCC----ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK----MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~----~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-..+.. .++.--+..||.+| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 468888877664 34444677788877 47888887775
No 157
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.37 E-value=15 Score=25.07 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=31.5
Q ss_pred CCCCcCcccccCCC---Ccee--cCCCCcccHhhHHHHcC--------CCCCCCCCCcCcc
Q 028459 107 EREDECGICLEPCT---KMVL--PNCCHAMCIKCYRNWNT--------KSESCPFCRGSMK 154 (208)
Q Consensus 107 ~~~~~C~ICle~~~---~~vl--~~C~H~Fc~~Ci~~w~~--------~~~~CP~CR~~~~ 154 (208)
+.+..|.+|...-. ..++ -.|...||..|+.+-+. ..=.||.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34568999986532 2222 35889999999876432 2237999975543
No 158
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=25.41 E-value=17 Score=23.49 Aligned_cols=44 Identities=18% Similarity=0.503 Sum_probs=26.2
Q ss_pred CCCCcCcccccCCCCc--ee-cCCCCcccHhhHHHHc---CCCCCCCCCCc
Q 028459 107 EREDECGICLEPCTKM--VL-PNCCHAMCIKCYRNWN---TKSESCPFCRG 151 (208)
Q Consensus 107 ~~~~~C~ICle~~~~~--vl-~~C~H~Fc~~Ci~~w~---~~~~~CP~CR~ 151 (208)
.+...| ||....... +. -.|...||..|+.--. ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344568 998654432 22 3588899999985321 12346777753
No 159
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=33 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.545 Sum_probs=26.2
Q ss_pred CCcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
...|+-|-..+...++..-+..||..| .+|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 357888887766544444566777766 47889988775
No 160
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.77 E-value=33 Score=21.30 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=24.5
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+-|-+.+....+..-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 46888887665443333566677766 46888888775
No 161
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.75 E-value=34 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=13.5
Q ss_pred cCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 125 PNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
+.|||++-. .....||.|..+-
T Consensus 142 ~~CG~i~~~-------~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 142 PICGYTAVD-------EAPEYCPVCGAPK 163 (170)
T ss_dssp TTTCCEEES-------CCCSBCTTTCCBG
T ss_pred CCCCCeeCC-------CCCCCCCCCCCCH
Confidence 457776531 2334899997654
No 162
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.35 E-value=5.8 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.627 Sum_probs=18.0
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..||.|...+... =++..|..|-....... .||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc-cCcchhhHHH
Confidence 3577776443311 11223444543332222 5666665554
No 163
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=53 Score=20.95 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=25.9
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-+.+....+..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 46888887766544444567777776 47888988874
No 164
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.08 E-value=61 Score=20.46 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=26.2
Q ss_pred CCcCcccccCCC-CceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 109 EDECGICLEPCT-KMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 109 ~~~C~ICle~~~-~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
...|+.|-+.+. ...+.--+..||..| ..|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccC
Confidence 357999988776 223333566777777 57899988885
No 165
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.89 E-value=42 Score=20.16 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=23.4
Q ss_pred cCcccccCCCC---cee-c-CCCCcccHhhHHHH----cCCCCCCCCCC
Q 028459 111 ECGICLEPCTK---MVL-P-NCCHAMCIKCYRNW----NTKSESCPFCR 150 (208)
Q Consensus 111 ~C~ICle~~~~---~vl-~-~C~H~Fc~~Ci~~w----~~~~~~CP~CR 150 (208)
.|.+|..+..+ .+. - .|.-.||..|+.-- ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 46677755432 222 2 48889999996321 12455788885
No 166
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.75 E-value=41 Score=21.68 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=25.4
Q ss_pred CcCcccccCCCCceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-+.+...++..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCC
Confidence 36888887766544444566777766 47888888774
No 167
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.75 E-value=22 Score=20.04 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=7.6
Q ss_pred CCCCCCCcCcc
Q 028459 144 ESCPFCRGSMK 154 (208)
Q Consensus 144 ~~CP~CR~~~~ 154 (208)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 36888876654
No 168
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.00 E-value=27 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=13.5
Q ss_pred cCCCCcccHhhHHHHcCCCCCCCCCCcCc
Q 028459 125 PNCCHAMCIKCYRNWNTKSESCPFCRGSM 153 (208)
Q Consensus 125 ~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~ 153 (208)
+.|||++=.+ .....||.|..+-
T Consensus 159 ~~CG~~~~g~------~~p~~CP~C~~~k 181 (191)
T 1lko_A 159 RNCGYVHEGT------GAPELCPACAHPK 181 (191)
T ss_dssp TTTCCEEEEE------ECCSBCTTTCCBG
T ss_pred CCCCCEeeCC------CCCCCCCCCcCCH
Confidence 4577765321 1234899998653
No 169
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.77 E-value=38 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCCcCcccccCCCC---ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 108 REDECGICLEPCTK---MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 108 ~~~~C~ICle~~~~---~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
+-..|..|-..+.. .....=|..+|..|..+-......|..|..+|.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 33567777766532 222335677899998776554447888888775
No 170
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.74 E-value=1.3e+02 Score=20.79 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=17.7
Q ss_pred CCCCcccHhhHH---H---Hc-----CCCCCCCCCCcC
Q 028459 126 NCCHAMCIKCYR---N---WN-----TKSESCPFCRGS 152 (208)
Q Consensus 126 ~C~H~Fc~~Ci~---~---w~-----~~~~~CP~CR~~ 152 (208)
.|+..||..|.. + -+ .....||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 489999999951 1 11 224689999643
No 171
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.64 E-value=64 Score=22.79 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=18.7
Q ss_pred CCcCcccccCCCCceecCCCCcccHh
Q 028459 109 EDECGICLEPCTKMVLPNCCHAMCIK 134 (208)
Q Consensus 109 ~~~C~ICle~~~~~vl~~C~H~Fc~~ 134 (208)
...|..|......-+-+.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45799998665544556699999853
No 172
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.24 E-value=55 Score=20.32 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=25.4
Q ss_pred CcCcccccCCCC--ceecCCCCcccHhhHHHHcCCCCCCCCCCcCcc
Q 028459 110 DECGICLEPCTK--MVLPNCCHAMCIKCYRNWNTKSESCPFCRGSMK 154 (208)
Q Consensus 110 ~~C~ICle~~~~--~vl~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~~~ 154 (208)
..|+.|-+.+.. .++.--|..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccC
Confidence 468888877763 24443566777776 47888888775
Done!