Query 028460
Match_columns 208
No_of_seqs 210 out of 1671
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fh2_A Probable ATP-dependent 99.9 2.1E-22 7.3E-27 158.8 12.2 112 80-193 2-113 (146)
2 1khy_A CLPB protein; alpha hel 99.9 2.7E-22 9.2E-27 157.2 9.9 113 81-193 2-114 (148)
3 3fes_A ATP-dependent CLP endop 99.9 4.8E-22 1.6E-26 156.8 10.3 110 81-193 4-113 (145)
4 3zri_A CLPB protein, CLPV; cha 99.9 5E-22 1.7E-26 162.2 10.0 110 81-193 21-131 (171)
5 2y1q_A CLPC N-domain, negative 99.9 1.1E-21 3.7E-26 154.3 9.4 110 81-193 2-111 (150)
6 1k6k_A ATP-dependent CLP prote 99.8 1.3E-19 4.4E-24 141.3 6.9 107 85-193 2-111 (143)
7 3pxg_A Negative regulator of g 99.8 1.1E-18 3.8E-23 160.9 9.0 110 81-193 2-111 (468)
8 3pxi_A Negative regulator of g 99.7 8.6E-18 2.9E-22 162.5 9.0 110 81-193 2-111 (758)
9 1qvr_A CLPB protein; coiled co 99.7 4.2E-17 1.4E-21 159.9 8.3 111 81-191 2-112 (854)
10 1r6b_X CLPA protein; AAA+, N-t 99.6 2.1E-15 7.3E-20 145.4 7.8 106 85-192 2-110 (758)
11 3fh2_A Probable ATP-dependent 99.3 2.6E-11 9E-16 95.0 10.7 92 50-148 54-145 (146)
12 3fes_A ATP-dependent CLP endop 99.3 1.2E-11 3.9E-16 97.1 8.5 90 50-147 55-144 (145)
13 2y1q_A CLPC N-domain, negative 99.2 8.6E-11 2.9E-15 91.7 9.7 92 50-149 53-144 (150)
14 1khy_A CLPB protein; alpha hel 99.1 2.4E-10 8.4E-15 88.8 8.6 93 50-148 53-145 (148)
15 1k6k_A ATP-dependent CLP prote 99.1 3.7E-10 1.3E-14 87.4 8.6 90 51-144 48-139 (143)
16 3pxg_A Negative regulator of g 98.8 9.9E-09 3.4E-13 94.4 8.0 90 51-148 54-143 (468)
17 3pxi_A Negative regulator of g 98.7 2.8E-08 9.5E-13 96.0 8.2 91 51-149 54-144 (758)
18 1r6b_X CLPA protein; AAA+, N-t 98.5 4.7E-07 1.6E-11 87.2 9.7 94 50-146 47-141 (758)
19 3zri_A CLPB protein, CLPV; cha 98.3 1E-06 3.6E-11 71.2 7.2 92 50-149 72-166 (171)
20 1qvr_A CLPB protein; coiled co 97.5 0.00015 5.2E-09 71.0 7.5 84 50-147 53-136 (854)
21 2f8n_G Core histone macro-H2A. 80.6 1.3 4.4E-05 33.5 3.4 40 89-130 57-96 (120)
22 2nqb_C Histone H2A; nucleosome 79.0 1.8 6.1E-05 32.8 3.7 40 89-130 58-97 (123)
23 1tzy_A Histone H2A-IV; histone 78.3 1.9 6.5E-05 33.0 3.7 40 89-130 60-99 (129)
24 1id3_C Histone H2A.1; nucleoso 78.0 2 6.7E-05 33.0 3.7 40 89-130 60-99 (131)
25 1f66_C Histone H2A.Z; nucleoso 76.1 2.7 9.2E-05 32.1 4.0 39 89-129 63-101 (128)
26 2f8n_K Histone H2A type 1; nuc 74.7 2.7 9.2E-05 33.0 3.7 40 89-130 79-118 (149)
27 2jss_A Chimera of histone H2B. 71.6 4.7 0.00016 32.6 4.6 39 89-129 141-179 (192)
28 1f1e_A Histone fold protein; a 70.9 31 0.0011 26.9 9.1 88 85-187 35-137 (154)
29 1tzy_D Histone H4-VI; histone- 68.1 6.7 0.00023 28.4 4.4 37 84-120 58-94 (103)
30 2yfw_B Histone H4, H4; cell cy 66.9 7.4 0.00025 28.3 4.4 37 84-120 58-94 (103)
31 3b0b_C CENP-X, centromere prot 59.3 8.5 0.00029 27.0 3.4 28 88-115 44-71 (81)
32 4dra_E Centromere protein X; D 51.0 17 0.0006 25.6 3.9 28 88-115 48-75 (84)
33 1ku5_A HPHA, archaeal histon; 47.1 22 0.00074 23.6 3.8 33 85-117 36-68 (70)
34 3b0c_W CENP-W, centromere prot 45.2 34 0.0012 23.1 4.6 32 86-117 36-67 (76)
35 3kw6_A 26S protease regulatory 43.0 33 0.0011 22.6 4.2 36 84-119 36-72 (78)
36 1f1e_A Histone fold protein; a 41.1 32 0.0011 26.8 4.4 36 84-119 111-146 (154)
37 1b67_A Protein (histone HMFA); 39.7 32 0.0011 22.5 3.7 28 90-117 37-64 (68)
38 1taf_B TFIID TBP associated fa 39.6 61 0.0021 21.9 5.1 35 83-117 34-68 (70)
39 4g92_C HAPE; transcription fac 39.4 33 0.0011 25.4 4.1 32 90-121 77-108 (119)
40 1id3_B Histone H4; nucleosome 38.0 47 0.0016 23.9 4.6 38 83-120 56-93 (102)
41 1n1j_B NF-YC; histone-like PAI 36.1 42 0.0014 23.8 4.1 32 90-121 55-86 (97)
42 2hue_C Histone H4; mini beta s 36.0 41 0.0014 23.2 3.9 38 83-120 38-75 (84)
43 1bja_A Transcription regulator 32.4 75 0.0026 22.7 4.9 65 110-175 17-83 (95)
44 2dzn_B 26S protease regulatory 31.7 63 0.0022 21.6 4.2 38 83-120 30-68 (82)
45 1jfi_A Transcription regulator 30.3 23 0.00079 25.3 1.8 33 89-121 46-78 (98)
46 3fm5_A Transcriptional regulat 29.8 1.5E+02 0.0052 21.1 8.9 70 110-179 41-117 (150)
47 3vlf_B 26S protease regulatory 27.4 95 0.0032 21.0 4.6 37 84-120 34-71 (88)
48 2ly8_A Budding yeast chaperone 27.2 1.4E+02 0.0048 22.2 5.8 51 72-122 60-114 (121)
49 3ksy_A SOS-1, SON of sevenless 26.7 68 0.0023 32.0 5.1 33 89-121 138-170 (1049)
50 1n1j_A NF-YB; histone-like PAI 26.0 1E+02 0.0034 21.4 4.6 25 94-118 49-73 (93)
51 1taf_A TFIID TBP associated fa 24.4 1.5E+02 0.005 19.8 4.9 37 82-118 28-64 (68)
52 2krk_A 26S protease regulatory 22.2 1.2E+02 0.004 20.6 4.2 36 84-119 44-80 (86)
53 2qvo_A Uncharacterized protein 21.4 1.5E+02 0.005 19.9 4.7 71 111-181 15-92 (95)
54 2r44_A Uncharacterized protein 21.1 2.6E+02 0.0087 22.8 7.0 60 87-146 264-325 (331)
55 1dw9_A Cyanate lyase; cyanate 20.9 58 0.002 25.5 2.6 40 98-140 31-73 (156)
56 3aji_B S6C, proteasome (prosom 20.8 83 0.0028 20.8 3.2 38 84-121 34-72 (83)
57 2xvc_A ESCRT-III, SSO0910; cel 20.8 1.9E+02 0.0064 19.0 5.1 46 104-150 6-53 (59)
58 3b0c_T CENP-T, centromere prot 20.7 1.6E+02 0.0054 21.3 4.9 37 85-121 37-73 (111)
59 1fnn_A CDC6P, cell division co 20.2 2.3E+02 0.0077 23.3 6.5 59 87-145 241-299 (389)
60 3fxd_A Protein ICMQ; helix bun 20.1 73 0.0025 20.8 2.5 51 81-148 1-51 (57)
No 1
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.88 E-value=2.1e-22 Score=158.82 Aligned_cols=112 Identities=29% Similarity=0.394 Sum_probs=104.0
Q ss_pred CcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 028460 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (208)
Q Consensus 80 ~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~ 159 (208)
.|+++||++++++|+.|+++|+++||++|++||||+||++++++.+.++|+++|+|++.+++.+++.+++.|.. ...+
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~ 79 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGH 79 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCC
Confidence 48999999999999999999999999999999999999999889999999999999999999999999988763 2356
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 160 PPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 160 ~~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
+++|+.++++|+.|+.+|+++|++||++.|+|..
T Consensus 80 ~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLla 113 (146)
T 3fh2_A 80 IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLG 113 (146)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 8999999999999999999999999998777654
No 2
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.87 E-value=2.7e-22 Score=157.23 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=98.9
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|..|+++|+++||++|++||||+||++++++.+.++|+++|+|++.+++.++..+++.|...+..+++
T Consensus 2 ~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~~ 81 (148)
T 1khy_A 2 RLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDV 81 (148)
T ss_dssp --CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------
T ss_pred ChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888754322468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
++|+.++++|+.|+.+|+.+|++||++.|+|..
T Consensus 82 ~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLla 114 (148)
T 1khy_A 82 QPSQDLVRVLNLCDKLAQKRGDNFISSELFVLA 114 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 999999999999999999999999997766654
No 3
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.87 E-value=4.8e-22 Score=156.79 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=102.3
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
.+++||++++++|+.|+++|+++||++|++||||+||++++++.+.++|+++|+|++.+++.++..+++.|. . +.++
T Consensus 4 ~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~--~~~~ 80 (145)
T 3fes_A 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-I--SEDI 80 (145)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-C--CSCC
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C--CCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999998876 2 3569
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
++|+.++++|+.|+.+|+++|++||++.|+|..
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlA 113 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKTNYIGTEHILLA 113 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 999999999999999999999999998777643
No 4
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.86 E-value=5e-22 Score=162.15 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=102.0
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|+.|+++|+++||++|++||||+||++++++.+.++|+++|||++.+++.++ .+++.|... ..++
T Consensus 21 ~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~~--~~~~ 97 (171)
T 3zri_A 21 LIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQVL--DTYP 97 (171)
T ss_dssp HHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCCC--SSCC
T ss_pred HHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCCC--CCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999 999887532 3569
Q ss_pred CCCHHHHHHHHHHHHHHH-HcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKL-KSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~-~~Gd~~Isi~~~~f~ 193 (208)
++|++++++|+.|+.+|+ ++||+||++.|+|..
T Consensus 98 ~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLA 131 (171)
T 3zri_A 98 AFSPLLVELLQEAWLLSSTELEQAELRSGAIFLA 131 (171)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHH
Confidence 999999999999999999 999999998777653
No 5
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.86 E-value=1.1e-21 Score=154.31 Aligned_cols=110 Identities=26% Similarity=0.359 Sum_probs=98.4
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|..|+++|+++||++|++||||+||++++++.+..+|+++|+|++.+++.++..+++.|... +.+
T Consensus 2 ~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~---~~~ 78 (150)
T 2y1q_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMS---QTI 78 (150)
T ss_dssp --CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------CC
T ss_pred cchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCccc---ccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999887642 468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
++|+.++++|+.|+.+|+.+|++||++.|+|..
T Consensus 79 ~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLla 111 (150)
T 2y1q_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLG 111 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 999999999999999999999999998776653
No 6
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.79 E-value=1.3e-19 Score=141.32 Aligned_cols=107 Identities=18% Similarity=0.114 Sum_probs=95.4
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCC-CCCC-CC-CCCCC
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS-DLFF-FS-PERPP 161 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~-~~~~-~~-~~~~~ 161 (208)
||++++++|..|+++|+++||++|++||||+||+++++ +.++|+++|+|++.+++.++..+++. |... +. .++++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 89999999999999999999999999999999998763 89999999999999999999998875 6543 11 24689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 162 LTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 162 ~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
+|+.++++|+.|+.+|+.+|++||++.|+|..
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLla 111 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVA 111 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 99999999999999999999999998776654
No 7
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=1.1e-18 Score=160.87 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=100.9
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|..|+++|+++||++|++||||+||+.++++.+..+|+.+|+|.+.+++.++..+++.+.. ...+
T Consensus 2 m~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~ 78 (468)
T 3pxg_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTI 78 (468)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSC
T ss_pred cchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC---CCCC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999877653 2358
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
+||+.++++|+.|+.+|+++|++||++.|+|..
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLla 111 (468)
T 3pxg_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLG 111 (468)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 999999999999999999999999998776643
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=8.6e-18 Score=162.49 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=101.2
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|..|+++|+++||++|++||||+||+.++++.+.++|+++|+|++.+++.++..+++.+.. ...+
T Consensus 2 m~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~~ 78 (758)
T 3pxi_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQTI 78 (758)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSSC
T ss_pred chhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC---CCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999887753 2468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE 193 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~ 193 (208)
++|+.++++|+.|+.+|+++|++||++.|+|..
T Consensus 79 ~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLla 111 (758)
T 3pxi_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLG 111 (758)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 999999999999999999999999997766543
No 9
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.68 E-value=4.2e-17 Score=159.93 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=100.8
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~ 160 (208)
|+++||++++++|..|+++|+++||++|++||||+||+.++++.+..+|+.+|+|.+.+++.++..+++.|...+...++
T Consensus 2 ~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~ 81 (854)
T 1qvr_A 2 NLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQ 81 (854)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTC
T ss_pred ChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999887654323468
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCceEeEEeee
Q 028460 161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKF 191 (208)
Q Consensus 161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~ 191 (208)
++|+.++++|+.|+.+|+.+|++||++.|+|
T Consensus 82 ~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlL 112 (854)
T 1qvr_A 82 YLTSRLSGALNRAEGLMEELKDRYVAVDTLV 112 (854)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCcEeeHHHHH
Confidence 9999999999999999999999999976655
No 10
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=2.1e-15 Score=145.36 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=94.2
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCCC--CCCCCC
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK-SDLFFF--SPERPP 161 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k-~~~~~~--~~~~~~ 161 (208)
||++++++|..|+++|+++||++|++||||+||++++ .+..+|+++|+|.+.+++.++..+++ .|...+ ...+++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 8999999999999999999999999999999999864 48899999999999999999999876 554322 124689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCceEeEEeeee
Q 028460 162 LTEQAQRALDWAFNEKLKSVFSVILIFSKFF 192 (208)
Q Consensus 162 ~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f 192 (208)
+|+.++++|+.|+.+|+.+|++||++.|+|.
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLl 110 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLV 110 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEeeHHHHHH
Confidence 9999999999999999999999999777664
No 11
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.27 E-value=2.6e-11 Score=95.01 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=78.0
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
.-++....+..+...+.+.|+..+ +. ..||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|
T Consensus 54 ~gv~~~~l~~~l~~~l~~~~~~~~-----~~--~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL 126 (146)
T 3fh2_A 54 MGISLDAVRQEVEEIIGQGSQPTT-----GH--IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVL 126 (146)
T ss_dssp TTCCHHHHHHHHHHHHCCCSCCCC-----SC--CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCCCc-----CC--CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHH
Confidence 345566777787888877776221 11 25899999999999999999999999999999999999888999999
Q ss_pred HHcCCCHHHHHHHHHHHhc
Q 028460 130 RANGITLFKVREETLNLLG 148 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l~ 148 (208)
+++|||.+.+++.+...++
T Consensus 127 ~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 127 VKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp HHHTCCHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHhc
Confidence 9999999999999998774
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.27 E-value=1.2e-11 Score=97.06 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=76.9
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
.-++....+..+...+.+.|+ . + +. ..||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|
T Consensus 55 ~gvd~~~l~~~l~~~l~~~~~-~-~----~~--~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL 126 (145)
T 3fes_A 55 VGFTEAYLEGKIVDMEGKGEE-I-S----ED--IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKIL 126 (145)
T ss_dssp HTCCHHHHHHHHHHHHCCCSC-C-C----SC--CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCC-C-C----CC--CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHH
Confidence 345566777788888888776 2 1 11 25899999999999999999999999999999999999888899999
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 028460 130 RANGITLFKVREETLNLL 147 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l 147 (208)
+++|||.+.+++.|.+.+
T Consensus 127 ~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 127 NYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp HHHTCHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 13
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.19 E-value=8.6e-11 Score=91.71 Aligned_cols=92 Identities=26% Similarity=0.353 Sum_probs=76.1
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
.-++....+..+...+.+.|++.+ ...||+.++++|+.|..+|+++|+.+|++||||+||+.++++.+..+|
T Consensus 53 ~g~~~~~l~~~l~~~l~~~~~~~~--------~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L 124 (150)
T 2y1q_A 53 LGLGSEKIQKEVESLIGRAQEMSQ--------TIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVL 124 (150)
T ss_dssp TTCCHHHHHHHHHHHHCCC-------------CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCcccc--------cCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHH
Confidence 344556777788888888886432 125899999999999999999999999999999999998877788999
Q ss_pred HHcCCCHHHHHHHHHHHhcC
Q 028460 130 RANGITLFKVREETLNLLGK 149 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l~k 149 (208)
+.+||+.+.+++.+.+..+.
T Consensus 125 ~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 125 NNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp HHTTCCHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHCC
Confidence 99999999999999988764
No 14
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.10 E-value=2.4e-10 Score=88.79 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=73.2
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
.-++....+..+...+.++|++.++. +. ..||+.+.++|+.|..+|+.+|+.+|++||||+||++ +++.+..+|
T Consensus 53 ~g~~~~~l~~~l~~~l~~~p~~~~~~---~~--~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall~-~~~~~~~~L 126 (148)
T 1khy_A 53 AGINAGQLRTDINQALNRLPQVEGTG---GD--VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALE-SRGTLADIL 126 (148)
T ss_dssp HTCCHHHHHHHHHHHHTTSCCC------------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHT-SCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCCCC---CC--cCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHc-CCcHHHHHH
Confidence 34556677888888888899765421 11 1589999999999999999999999999999999994 457789999
Q ss_pred HHcCCCHHHHHHHHHHHhc
Q 028460 130 RANGITLFKVREETLNLLG 148 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l~ 148 (208)
+.+|++.+.+++.+.+..+
T Consensus 127 ~~~gi~~~~l~~~l~~~rg 145 (148)
T 1khy_A 127 KAAGATTANITQAIEQMRG 145 (148)
T ss_dssp HHTTCCHHHHHHHHHC---
T ss_pred HHcCCCHHHHHHHHHHHHC
Confidence 9999999999998876543
No 15
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.08 E-value=3.7e-10 Score=87.41 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=73.3
Q ss_pred chhhhccchhHHHHHhcC-CccC-CCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHH
Q 028460 51 FVTKYHRSSATATVSFSL-PTTV-KPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKF 128 (208)
Q Consensus 51 ~~~~~~~~~~~~t~i~~~-p~~~-~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~i 128 (208)
-++....+..+...+.+. |++. ++. .+. ..||+.++++|+.|..+|+.+|+.||++||||+||++++++.+.++
T Consensus 48 g~~~~~l~~~l~~~l~~~~p~~~~~~~--~~~--~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~i 123 (143)
T 1k6k_A 48 SVDLVALRQELEAFIEQTTPVLPASEE--ERD--TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYL 123 (143)
T ss_dssp TCCHHHHHHHHHHHHHHHSCBCCSSCS--CCS--CEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHH
Confidence 345566777777777665 8755 220 011 2589999999999999999999999999999999999887778999
Q ss_pred HHHcCCCHHHHHHHHH
Q 028460 129 LRANGITLFKVREETL 144 (208)
Q Consensus 129 L~~~GVd~~~lr~~le 144 (208)
|+.+||+.+.+++.+.
T Consensus 124 L~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 124 LRKHEVSRLDVVNFIS 139 (143)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999999999998764
No 16
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.78 E-value=9.9e-09 Score=94.35 Aligned_cols=90 Identities=27% Similarity=0.348 Sum_probs=72.6
Q ss_pred chhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 51 FVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 51 ~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
-++....+..+...+...|.+. + ...||+.++++|+.|..+|+++|+.+|++||||+||+.++++.+.++|+
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~------~--~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~ 125 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMS------Q--TIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLN 125 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTC------S--SCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcccCCCC------C--CCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHH
Confidence 3444555555555554444321 1 1259999999999999999999999999999999999999889999999
Q ss_pred HcCCCHHHHHHHHHHHhc
Q 028460 131 ANGITLFKVREETLNLLG 148 (208)
Q Consensus 131 ~~GVd~~~lr~~le~~l~ 148 (208)
.+|++.+++++.+...++
T Consensus 126 ~~gv~~~~l~~~i~~~~~ 143 (468)
T 3pxg_A 126 NLGVSLNKARQQVLQLLG 143 (468)
T ss_dssp HTTCCHHHHHHHHHTTCC
T ss_pred HcCCCHHHHHHHHHHHhc
Confidence 999999999999987664
No 17
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.69 E-value=2.8e-08 Score=95.99 Aligned_cols=91 Identities=26% Similarity=0.344 Sum_probs=74.3
Q ss_pred chhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 51 FVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 51 ~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
-++....+..+...+.+.|.+. + ...||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|+
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~------~--~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~ 125 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMS------Q--TIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLN 125 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTC------S--SCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCC------C--CCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHH
Confidence 3444555666565555555321 1 1269999999999999999999999999999999999999899999999
Q ss_pred HcCCCHHHHHHHHHHHhcC
Q 028460 131 ANGITLFKVREETLNLLGK 149 (208)
Q Consensus 131 ~~GVd~~~lr~~le~~l~k 149 (208)
++|++.+.+++.+...++.
T Consensus 126 ~~gv~~~~l~~~i~~~~~~ 144 (758)
T 3pxi_A 126 NLGVSLNKARQQVLQLLGS 144 (758)
T ss_dssp HTTCCHHHHHHHHHTTCCC
T ss_pred HcCCCHHHHHHHHHHHhcC
Confidence 9999999999999877653
No 18
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.46 E-value=4.7e-07 Score=87.15 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=76.0
Q ss_pred cchhhhccchhHHHHHhc-CCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHH
Q 028460 50 RFVTKYHRSSATATVSFS-LPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKF 128 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~-~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~i 128 (208)
+-++....+..+...+.+ +|++.++.. .+. ..||+.++++|+.|..+|+.+|+.+|++||||+||+.++++.+..+
T Consensus 47 ~gvd~~~l~~~l~~~l~~~~p~~~~~~~-~~~--~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~ 123 (758)
T 1r6b_X 47 CSVDLVALRQELEAFIEQTTPVLPASEE-ERD--TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYL 123 (758)
T ss_dssp TTCCHHHHHHHHHHHHHHHSCBCCCSSS-CCC--CEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHH
T ss_pred cCCCHHHHHHHHHHHHhccCCCCCCccc-cCC--CCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHH
Confidence 445566777888888865 887543200 011 2589999999999999999999999999999999999988889999
Q ss_pred HHHcCCCHHHHHHHHHHH
Q 028460 129 LRANGITLFKVREETLNL 146 (208)
Q Consensus 129 L~~~GVd~~~lr~~le~~ 146 (208)
|+.+||+.+.+.+.+...
T Consensus 124 L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 124 LRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp HHHTTCCHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHh
Confidence 999999999998887543
No 19
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.33 E-value=1e-06 Score=71.23 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=67.5
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHH-HcCCCCcCHHHHHHHHhhcCCc-hHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEAR-KLKYPNTGTEAFLMGILVEGTS-TTAK 127 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~-~~g~~~I~tEHLLlALL~e~~s-~a~~ 127 (208)
.-|+..+.+..+. .+.++|+..+. ...||+.++++|+.|..+|+ ++|+.||++||||+||++++.. ....
T Consensus 72 ~gvd~~~l~~~l~-~l~~~p~~~~~-------~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~ 143 (171)
T 3zri_A 72 AGLEVDQVKQAIA-STYSREQVLDT-------YPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFK 143 (171)
T ss_dssp TTCCHHHHHHHHH-HHSCCCCCCSS-------CCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHH
T ss_pred cCCCHHHHHHHHH-HHhcCCCCCCC-------CCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHH
Confidence 4466677888888 88888863321 12589999999999999999 9999999999999999987521 1112
Q ss_pred HHHH-cCCCHHHHHHHHHHHhcC
Q 028460 128 FLRA-NGITLFKVREETLNLLGK 149 (208)
Q Consensus 128 iL~~-~GVd~~~lr~~le~~l~k 149 (208)
+-.. ..|+.+.+++.+..+...
T Consensus 144 ~~~~l~~i~~~~L~~~~~~~~~~ 166 (171)
T 3zri_A 144 LISLFEGINRENLKKHFAMILSD 166 (171)
T ss_dssp HHHHTTTSCHHHHHHTHHHHTTT
T ss_pred hhHHHHcCCHHHHHHHHHHHHhc
Confidence 2222 357888888877665443
No 20
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00015 Score=70.98 Aligned_cols=84 Identities=12% Similarity=0.014 Sum_probs=66.9
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
+-++....+..+...+.++|++.++. .. ..||+.++++|+.|..+|..+|+.+|+++|||+||+.+++. +
T Consensus 53 ~gvd~~~l~~~l~~~l~~~p~~~~~~---~~--~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~---- 122 (854)
T 1qvr_A 53 AGADPKALKELQERELARLPKVEGAE---VG--QYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L---- 122 (854)
T ss_dssp TSSCHHHHHHHHHHHHHTSCCCCGGG---TT--CEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S----
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCC---CC--CCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c----
Confidence 45566778888888888888754321 11 25899999999999999999999999999999999998753 1
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 028460 130 RANGITLFKVREETLNLL 147 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l 147 (208)
++.+.++..+....
T Consensus 123 ----~~~~~~~~~~~~~~ 136 (854)
T 1qvr_A 123 ----PGLEALKGALKELR 136 (854)
T ss_dssp ----CCHHHHHHHHTSSC
T ss_pred ----CCHHHHHHHHHHhc
Confidence 88888888776543
No 21
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=80.61 E-value=1.3 Score=33.49 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
+.++++.|-+.|+..+...|.++|+-+|+-.|+ ....+|+
T Consensus 57 ~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDe--EL~~Ll~ 96 (120)
T 2f8n_G 57 TAEILELAVNAARDNKKGRVTPRHILLAVANDE--ELNQLLK 96 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCH--HHHHHhC
Confidence 458889999999999999999999999997653 3455553
No 22
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=78.98 E-value=1.8 Score=32.83 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
+.++++.|-+.|+..+...|.++||-+|+-.|+ ....+|.
T Consensus 58 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe--EL~~Ll~ 97 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 97 (123)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHhccH--HHHHHhc
Confidence 457888999999999999999999999997653 3455554
No 23
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=78.33 E-value=1.9 Score=32.97 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
+.++++.|-+.|+..+...|.++||-+|+-.|+ ....+|.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe--EL~~L~~ 99 (129)
T 1tzy_A 60 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLG 99 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH--HHHHHhC
Confidence 457889999999999999999999999997653 3455554
No 24
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=78.02 E-value=2 Score=32.97 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
+.++++.|-+.|+..+...|.++||-+|+-.|+ ....+|.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hI~lAI~nDe--EL~~Ll~ 99 (131)
T 1id3_C 60 AAEILELAGNAARDNKKTRIIPRHLQLAIRNDD--ELNKLLG 99 (131)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCH--HHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhccH--HHHHHhc
Confidence 457888999999999999999999999997653 3555554
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=76.15 E-value=2.7 Score=32.06 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
+.++++.|-+.|+..+...|.++||-+|+-.|+ ....+|
T Consensus 63 ~aEIlelAgn~A~~~k~krItprhi~lAI~nDe--EL~~Ll 101 (128)
T 1f66_C 63 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 101 (128)
T ss_dssp HHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSH--HHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH--HHhhhh
Confidence 358889999999999999999999999998654 244444
No 26
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=74.75 E-value=2.7 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
+.++++.|-+.|+..+...|.++||-+|+-.|+ ....+|.
T Consensus 79 ~aEILelAgn~A~~~krkrItprhI~lAI~nDe--EL~~Ll~ 118 (149)
T 2f8n_K 79 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLG 118 (149)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSH--HHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccH--HHHHHhc
Confidence 457889999999999999999999999998754 3455554
No 27
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=71.63 E-value=4.7 Score=32.62 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
+.++++.|-+.|+..+...|.++|+-+|+-.|+ ....+|
T Consensus 141 ~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~--eL~~L~ 179 (192)
T 2jss_A 141 TAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD--ELDSLI 179 (192)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH--HHHHHH
Confidence 457888999999999999999999999997653 345555
No 28
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=70.94 E-value=31 Score=26.93 Aligned_cols=88 Identities=13% Similarity=-0.074 Sum_probs=56.7
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh--c-----------CCchHHHHHHHcCCCH--HHHHHHHHHHhcC
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV--E-----------GTSTTAKFLRANGITL--FKVREETLNLLGK 149 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~--e-----------~~s~a~~iL~~~GVd~--~~lr~~le~~l~k 149 (208)
.++-...+...|.+.|...|...|..+|+++++-. . +.....+++++.|... ......+.+.+
T Consensus 35 l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~l-- 112 (154)
T 1f1e_A 35 VPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLI-- 112 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCccccccCCccHHHHHHHHcCCccchHHHHHHHHHHH--
Confidence 45555667788999999999999999999999932 1 1123456666665431 12222222221
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCceEeE
Q 028460 150 SDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILI 187 (208)
Q Consensus 150 ~~~~~~~~~~~~~S~~lkrVLe~A~~~A~~~Gd~~Isi 187 (208)
+.=+..|...|.++|...|...|.-
T Consensus 113 -------------e~f~~~I~~~A~~~a~ha~RKTIt~ 137 (154)
T 1f1e_A 113 -------------CRATEELGEKAAEYADEDGRKTVQG 137 (154)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred -------------HHHHHHHHHHHHHHHHHcCCCccCH
Confidence 1223557788888899988888864
No 29
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=68.15 E-value=6.7 Score=28.44 Aligned_cols=37 Identities=5% Similarity=-0.129 Sum_probs=32.6
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 84 ~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
-+..-+.++++.|...|+..+-..|+++|+.+||=..
T Consensus 58 vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 58 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3567788899999999999999999999999999654
No 30
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=66.90 E-value=7.4 Score=28.25 Aligned_cols=37 Identities=5% Similarity=-0.128 Sum_probs=32.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 84 ~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
-+..-+.++++.|...|+..+-..|+++|+.+||=..
T Consensus 58 vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 58 VLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3566788899999999999999999999999999654
No 31
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=59.34 E-value=8.5 Score=27.00 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 028460 88 RAIRSFAMAELEARKLKYPNTGTEAFLM 115 (208)
Q Consensus 88 ~a~~aL~~A~~~A~~~g~~~I~tEHLLl 115 (208)
=+++++..|..+|+.-|..+|+.+||=-
T Consensus 44 FV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 44 FVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 4567888888889889999999999853
No 32
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=51.02 E-value=17 Score=25.61 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 028460 88 RAIRSFAMAELEARKLKYPNTGTEAFLM 115 (208)
Q Consensus 88 ~a~~aL~~A~~~A~~~g~~~I~tEHLLl 115 (208)
=+++++..|..+|..-+..+|+.+||--
T Consensus 48 FV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 48 FVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 3567778888888888999999999854
No 33
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=47.12 E-value=22 Score=23.62 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=28.0
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
...-+.+++..|...|...|-..|.++++.+|+
T Consensus 36 ~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 36 LEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 345566678889999999999999999999987
No 34
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=45.22 E-value=34 Score=23.12 Aligned_cols=32 Identities=16% Similarity=-0.133 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 86 T~~a~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
++=...+-..|.+.|+..+...|..+|++.|+
T Consensus 36 ~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~ 67 (76)
T 3b0c_W 36 LLFLHRLAEEARTNAFENKSKIIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 33344455678899999999999999999887
No 35
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=42.99 E-value=33 Score=22.64 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=30.0
Q ss_pred hhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 84 KWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 84 ~fT-~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
.|| .++..+...|...|.+.+...|+.+|+..||-+
T Consensus 36 G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 36 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 454 467788889999999999999999999988854
No 36
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=41.06 E-value=32 Score=26.83 Aligned_cols=36 Identities=11% Similarity=-0.210 Sum_probs=30.8
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 84 ~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
-+.+-+..+...|.++|...|...|..+|+++|+=.
T Consensus 111 ~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 111 LICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 345666778889999999999999999999999854
No 37
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=39.73 E-value=32 Score=22.49 Aligned_cols=28 Identities=11% Similarity=-0.103 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 90 IRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 90 ~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
..+...|...|...+...|.++|+.+|+
T Consensus 37 ~~l~~~A~~~a~~~kRkTI~~~Di~~A~ 64 (68)
T 1b67_A 37 EEIASEAVKLAKHAGRKTIKAEDIELAR 64 (68)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 3445667777999999999999999987
No 38
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=39.62 E-value=61 Score=21.87 Aligned_cols=35 Identities=14% Similarity=-0.006 Sum_probs=31.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
+....++.++++.|...++..|...++++++=.||
T Consensus 34 ~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 34 EDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 45677899999999999999999999999988776
No 39
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=39.40 E-value=33 Score=25.38 Aligned_cols=32 Identities=9% Similarity=-0.080 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 90 ~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
..+...|...|+..+...|.++||..|+-.++
T Consensus 77 ~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 77 TELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 34557788899999999999999999997654
No 40
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=37.97 E-value=47 Score=23.92 Aligned_cols=38 Identities=3% Similarity=-0.129 Sum_probs=32.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
+-+...+.+++..|..+|+..+-..|+++.+.+||=..
T Consensus 56 ~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 56 AVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34567788889999999999999999999999999654
No 41
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=36.13 E-value=42 Score=23.76 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 90 ~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
..+...|.+.|+..+...|..+||.+|+-.++
T Consensus 55 ~~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 55 TELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 34556788889999999999999999997654
No 42
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=35.97 E-value=41 Score=23.19 Aligned_cols=38 Identities=5% Similarity=-0.139 Sum_probs=33.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
+-+...+.+++..|...|+..+-..|+++.+.+||=..
T Consensus 38 ~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 38 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34677888999999999999999999999999998543
No 43
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=32.37 E-value=75 Score=22.68 Aligned_cols=65 Identities=18% Similarity=0.019 Sum_probs=46.3
Q ss_pred HHHHHHH-HhhcCCchHHHHHH-HcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 028460 110 TEAFLMG-ILVEGTSTTAKFLR-ANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFN 175 (208)
Q Consensus 110 tEHLLlA-LL~e~~s~a~~iL~-~~GVd~~~lr~~le~~l~k~~~~~~~~~~~~~S~~lkrVLe~A~~ 175 (208)
++.-+|. |-..+...+..+-+ ..++|...+-..++....++-.. .+++++.+|+..+.+|+.|..
T Consensus 17 ~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~~~Dl~LT~~G~~~l~~a~~ 83 (95)
T 1bja_A 17 KTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KSGDGLIITGEAQDIISNAAT 83 (95)
T ss_dssp HHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EETTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cCCCCeeeCHhHHHHHHHHHH
Confidence 4444444 44554455778888 88999999999999888776432 223448899999999998854
No 44
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=31.71 E-value=63 Score=21.55 Aligned_cols=38 Identities=13% Similarity=-0.087 Sum_probs=30.9
Q ss_pred hhhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 83 PKWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 83 ~~fT-~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
+.|| .++.++...|...|.+.+...|+.+|+..|+-..
T Consensus 30 ~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 30 DSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3455 4677788899999999999999999999888654
No 45
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=30.29 E-value=23 Score=25.29 Aligned_cols=33 Identities=15% Similarity=-0.011 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
+.++++.|.+.|+..+...|.+.||.+++-.++
T Consensus 46 i~el~~~A~~~a~~~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 46 LESLLKKACQVTQSRNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp HHHHHHHHHHHHHTC---CBCHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc
Confidence 345667888999999999999999999997654
No 46
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.77 E-value=1.5e+02 Score=21.08 Aligned_cols=70 Identities=13% Similarity=-0.044 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCc-hHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC---CC---CCCCCCCHHHHHHHHHHHHHHHH
Q 028460 110 TEAFLMGILVEGTS-TTAKFLRANGITLFKVREETLNLLGKSDLFF---FS---PERPPLTEQAQRALDWAFNEKLK 179 (208)
Q Consensus 110 tEHLLlALL~e~~s-~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~---~~---~~~~~~S~~lkrVLe~A~~~A~~ 179 (208)
..++|..|...+++ ....+-+..|++...+-..++....++-... +. ...+.+|+.-+.+++........
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 117 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDA 117 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHHH
Confidence 34455555445434 5688999999999999999988876643210 10 12377899999999887766554
No 47
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=27.37 E-value=95 Score=21.05 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=29.5
Q ss_pred hhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 84 KWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 84 ~fT-~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
.|| ..+..+...|...|.+.+...|+.+|+.-|+-.-
T Consensus 34 G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 34 NSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 71 (88)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 354 4678888889999999988889999998888543
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=27.16 E-value=1.4e+02 Score=22.24 Aligned_cols=51 Identities=6% Similarity=-0.115 Sum_probs=40.2
Q ss_pred CCCCCCCCCcch----hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 028460 72 VKPETASPDKIP----KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (208)
Q Consensus 72 ~~p~~~~~~m~~----~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~ 122 (208)
.+.+|.+++.++ -+..-+.+++..|..++...+-..|+.+.+.++|=..+.
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 456666665443 356778889999999999999999999999999876653
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=26.70 E-value=68 Score=32.01 Aligned_cols=33 Identities=3% Similarity=0.067 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
+.++|+.|-+.|+..++..|.+.|+.+|+-.+.
T Consensus 138 ~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 138 SADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 357899999999999999999999999998765
No 50
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=25.99 E-value=1e+02 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCcCHHHHHHHHh
Q 028460 94 AMAELEARKLKYPNTGTEAFLMGIL 118 (208)
Q Consensus 94 ~~A~~~A~~~g~~~I~tEHLLlALL 118 (208)
..|...|...+-..|..+|+++|+-
T Consensus 49 ~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 49 SEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3355668888999999999999994
No 51
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=24.42 E-value=1.5e+02 Score=19.79 Aligned_cols=37 Identities=5% Similarity=-0.085 Sum_probs=30.7
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHh
Q 028460 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118 (208)
Q Consensus 82 ~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL 118 (208)
.+-.-.-+.+++..|..+|...|...|+.+-+=||+=
T Consensus 28 ~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~ 64 (68)
T 1taf_A 28 LEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3444567788999999999999999999999988873
No 52
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=22.23 E-value=1.2e+02 Score=20.64 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=29.1
Q ss_pred hhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 84 KWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 84 ~fT-~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
.|| .++.++...|...|.+.+...|+.+|+..|+-.
T Consensus 44 G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 44 GASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 454 567788889999999988889999998888743
No 53
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.41 E-value=1.5e+02 Score=19.90 Aligned_cols=71 Identities=11% Similarity=-0.162 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCC----chHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHcC
Q 028460 111 EAFLMGILVEGT----STTAKFLRANGITLFKVREETLNLLGKSDLFFFSP---ERPPLTEQAQRALDWAFNEKLKSV 181 (208)
Q Consensus 111 EHLLlALL~e~~----s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~---~~~~~S~~lkrVLe~A~~~A~~~G 181 (208)
..+|+.++..++ -....+-+..|++...+-..+.....++-...+.. ..+.+|+.-+.+++........+.
T Consensus 15 ~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~~e 92 (95)
T 2qvo_A 15 LEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDIME 92 (95)
T ss_dssp HHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHHHHHHh
Confidence 345566654322 24688999999999999999888776653311111 137789999999998888776654
No 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=21.08 E-value=2.6e+02 Score=22.85 Aligned_cols=60 Identities=17% Similarity=-0.089 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc--CCchHHHHHHHcCCCHHHHHHHHHHH
Q 028460 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE--GTSTTAKFLRANGITLFKVREETLNL 146 (208)
Q Consensus 87 ~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e--~~s~a~~iL~~~GVd~~~lr~~le~~ 146 (208)
..+..++..|...|.-.|..+|+++|+..++-.- ..-....-....|++.+++.+.+-+.
T Consensus 264 R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~~~~~~~~~~~~~~~i~~~i~~~ 325 (331)
T 2r44_A 264 RAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILNYEAEAEGISTRQIIETILRK 325 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSEECHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhccCCHHHHhcCCCHHHHHHHHHhc
Confidence 3455667778888888888999999987655311 11000001123578888777776544
No 55
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=20.93 E-value=58 Score=25.50 Aligned_cols=40 Identities=5% Similarity=-0.148 Sum_probs=24.9
Q ss_pred HHHHHcCCCCcCHHHHHHHHhhcC---CchHHHHHHHcCCCHHHHH
Q 028460 98 LEARKLKYPNTGTEAFLMGILVEG---TSTTAKFLRANGITLFKVR 140 (208)
Q Consensus 98 ~~A~~~g~~~I~tEHLLlALL~e~---~s~a~~iL~~~GVd~~~lr 140 (208)
++|...|. +...+-.+++.+. ...+.++.+.+|++.+.+.
T Consensus 31 ~IAe~iG~---S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~ 73 (156)
T 1dw9_A 31 EIADGTGL---AEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL 73 (156)
T ss_dssp HHHTTSSS---CHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhCc---CHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence 35666664 4555555554442 3457788888999987743
No 56
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=20.81 E-value=83 Score=20.79 Aligned_cols=38 Identities=13% Similarity=-0.155 Sum_probs=30.3
Q ss_pred hhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 84 KWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 84 ~fT-~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
.|| .....+...|...|.+.+...|+.+|+..|+-.-.
T Consensus 34 G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 34 KISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 454 46777888899999998888999999988886543
No 57
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.75 E-value=1.9e+02 Score=18.97 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCCCcCHHHHHHHHhhcCCch--HHHHHHHcCCCHHHHHHHHHHHhcCC
Q 028460 104 KYPNTGTEAFLMGILVEGTST--TAKFLRANGITLFKVREETLNLLGKS 150 (208)
Q Consensus 104 g~~~I~tEHLLlALL~e~~s~--a~~iL~~~GVd~~~lr~~le~~l~k~ 150 (208)
.|..| +|-.++..+....++ +..+-+.+||+.+++...+.+.-.++
T Consensus 6 ~~~~~-~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 6 HHHMI-TERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp CSCCC-CHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hhhhc-cHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 34444 555666666665554 57888999999999999988876554
No 58
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=20.75 E-value=1.6e+02 Score=21.34 Aligned_cols=37 Identities=5% Similarity=-0.148 Sum_probs=32.0
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
+..-+..+...|..+|+..|-..|+.+.+.+++=.++
T Consensus 37 l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 37 SERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 4456677888999999999999999999999997765
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=20.17 E-value=2.3e+02 Score=23.33 Aligned_cols=59 Identities=8% Similarity=-0.123 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHH
Q 028460 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLN 145 (208)
Q Consensus 87 ~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~ 145 (208)
..+.+++..|...|...+...|+.+|+..++-..........++.+..+...+...+..
T Consensus 241 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~ 299 (389)
T 1fnn_A 241 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVR 299 (389)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 45678888888888888889999999988775544455566777766444444444443
No 60
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.14 E-value=73 Score=20.79 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=35.0
Q ss_pred cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhc
Q 028460 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148 (208)
Q Consensus 81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~ 148 (208)
|.+.+|++-.++|-.|..+|.+.|-= + ...+|+-.|=+..++|+.+...++
T Consensus 1 Mkd~lt~eq~~aILkaLdeaIe~GPW-------------e----~SNFLRvIGKnL~eIRd~F~~~i~ 51 (57)
T 3fxd_A 1 MKDQLSDEQKETILKALNDAIEKGPW-------------D----KSNFLRVIGKKLIAIRDRFLKRIG 51 (57)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSCT-------------T----SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHcCCc-------------h----HHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45678888899999999999886643 2 233566666667888888777664
Done!