Query 028460
Match_columns 208
No_of_seqs 210 out of 1671
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 19:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028460.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028460hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qvra1 a.174.1.1 (A:4-148) N- 99.9 6.1E-23 4.4E-27 160.8 8.0 118 83-200 1-121 (145)
2 d1khya_ a.174.1.1 (A:) N-termi 99.9 7.9E-22 5.7E-26 151.4 10.2 110 83-192 1-110 (139)
3 d1k6ka_ a.174.1.1 (A:) N-termi 99.7 2.5E-18 1.9E-22 131.9 6.5 106 85-192 2-110 (142)
4 d1khya_ a.174.1.1 (A:) N-termi 99.1 7E-11 5.1E-15 89.3 8.6 88 51-144 51-138 (139)
5 d1k6ka_ a.174.1.1 (A:) N-termi 99.0 4E-10 2.9E-14 85.2 8.9 61 84-144 79-139 (142)
6 d1qvra1 a.174.1.1 (A:4-148) N- 98.6 3.3E-08 2.4E-12 75.7 7.8 84 50-147 50-133 (145)
7 d1u35c1 a.22.1.1 (C:814-919) m 86.3 0.31 2.2E-05 34.5 3.7 41 89-131 46-86 (106)
8 d1tzya_ a.22.1.1 (A:) Histone 84.6 0.41 3E-05 33.8 3.7 41 89-131 47-87 (106)
9 d1f66c_ a.22.1.1 (C:) Histone 80.2 0.6 4.4E-05 32.7 3.2 39 89-129 47-85 (103)
10 d1q9ca_ a.22.1.3 (A:) Histone 72.0 2.2 0.00016 32.3 4.6 34 88-121 132-165 (172)
11 d1htaa_ a.22.1.2 (A:) Archaeal 62.1 6 0.00043 24.6 4.6 32 86-117 34-65 (68)
12 d1w5sa2 c.37.1.20 (A:7-293) CD 48.5 12 0.00089 27.6 5.2 32 88-119 255-286 (287)
13 d1n1jb_ a.22.1.3 (B:) Nuclear 45.8 12 0.00088 23.7 4.1 31 91-121 37-67 (78)
14 d1ku5a_ a.22.1.2 (A:) Archaeal 45.7 11 0.00081 23.1 3.8 30 88-117 35-64 (66)
15 d2fxaa1 a.4.5.28 (A:6-167) Pro 39.5 57 0.0042 23.0 7.6 72 107-178 40-117 (162)
16 d1fnna2 c.37.1.20 (A:1-276) CD 38.7 20 0.0014 26.1 4.9 32 87-118 240-271 (276)
17 d1n1ja_ a.22.1.3 (A:) Nuclear 36.3 44 0.0032 21.3 5.9 28 94-121 43-70 (87)
18 d1f1ea_ a.22.1.2 (A:) Archaeal 35.8 18 0.0013 26.0 4.1 34 86-119 110-143 (151)
19 d2bykb1 a.22.1.3 (B:11-99) Chr 32.2 32 0.0023 22.2 4.6 27 94-120 40-66 (89)
20 d2i10a2 a.121.1.1 (A:79-194) P 31.0 63 0.0046 20.9 8.2 64 84-149 49-114 (116)
21 d1jfia_ a.22.1.3 (A:) Negative 30.3 13 0.00092 22.9 2.0 27 90-116 38-64 (66)
22 d2huec1 a.22.1.1 (C:20-101) Hi 29.8 18 0.0013 23.3 2.9 37 83-119 37-73 (82)
23 d1f1ea_ a.22.1.2 (A:) Archaeal 28.7 90 0.0065 21.9 11.1 90 83-187 30-134 (151)
24 d1sfxa_ a.4.5.50 (A:) Hypothet 26.8 42 0.0031 22.0 4.6 42 110-151 22-63 (109)
25 d2cfxa1 a.4.5.32 (A:1-63) Tran 23.6 70 0.0051 18.9 5.0 39 112-150 9-47 (63)
26 d2fbia1 a.4.5.28 (A:5-140) Pro 21.0 86 0.0063 20.7 5.4 70 110-179 32-107 (136)
27 d1jfib_ a.22.1.3 (B:) Negative 20.4 63 0.0046 22.4 4.6 28 94-121 44-71 (135)
No 1
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]}
Probab=99.87 E-value=6.1e-23 Score=160.78 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=106.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPL 162 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~~~ 162 (208)
++||++++++|..|+++|++++|++|+++|||+||++++++.+..+|+.+|+|++.+++.++..+.+.|.+.+...++++
T Consensus 1 dkfT~~a~~~l~~A~~~A~~~~~~~i~~~HlL~all~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~ 80 (145)
T d1qvra1 1 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYL 80 (145)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEE
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcchHHHHHHHcCCCHHHHHHHHHHHhhcccccCCCcccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999998876654567999
Q ss_pred CHHHHHHHHHHHHHHHHcCCceEeEEeee---eecCCCCCC
Q 028460 163 TEQAQRALDWAFNEKLKSVFSVILIFSKF---FESKSPSAS 200 (208)
Q Consensus 163 S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~---f~~~~~~~~ 200 (208)
|++++++|+.|+.+|+++||+||+++|+| +..+++.+.
T Consensus 81 s~~l~~il~~A~~~a~~~gd~~Is~ehLllal~~~~~~~~~ 121 (145)
T d1qvra1 81 TSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPG 121 (145)
T ss_dssp CHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTSCC
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhcccchhh
Confidence 99999999999999999999999976554 445554443
No 2
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=7.9e-22 Score=151.39 Aligned_cols=110 Identities=12% Similarity=-0.003 Sum_probs=97.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPL 162 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~~~ 162 (208)
++||++++++|..|+.+|++++|++|++||||+||+.++++.+..+|+.+|+|++.++..++..+.+.|...+....+++
T Consensus 1 ~kfT~~~~~~l~~A~~~A~~~~h~~v~~eHlL~all~~~~~~~~~iL~~~g~d~~~~~~~~~~~l~~~p~~~~~~~~~~~ 80 (139)
T d1khya_ 1 DRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQP 80 (139)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------CB
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCcccHHHHHHHHcCCcHHHHHHHHHHHhhccccccCccccccc
Confidence 47999999999999999999999999999999999999889999999999999999999999999988876554567899
Q ss_pred CHHHHHHHHHHHHHHHHcCCceEeEEeeee
Q 028460 163 TEQAQRALDWAFNEKLKSVFSVILIFSKFF 192 (208)
Q Consensus 163 S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f 192 (208)
|+++.++|+.|..+|+.+|++||+++|+|.
T Consensus 81 s~~~~~vl~~A~~~a~~~~d~~I~~ehlLl 110 (139)
T d1khya_ 81 SQDLVRVLNLCDKLAQKRGDNFISSELFVL 110 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSBCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCeecHHHHHH
Confidence 999999999999999999999999766654
No 3
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=2.5e-18 Score=131.92 Aligned_cols=106 Identities=18% Similarity=0.091 Sum_probs=91.5
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCC---CCCCCCCCC
Q 028460 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDL---FFFSPERPP 161 (208)
Q Consensus 85 fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~---~~~~~~~~~ 161 (208)
||++++++|+.|+++|++++|++|+|||||+||++++ ....++...|++.+.++..+...+...+. .......++
T Consensus 2 ~s~~l~~~l~~A~~~A~~~~h~~i~~EHLL~aLl~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (142)
T d1k6ka_ 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (142)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhch--hHHHHHHHcCCchhhhHHHHHHHHHhcCCCCCccccccccc
Confidence 7899999999999999999999999999999999864 36789999999999999998877654322 112345689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCceEeEEeeee
Q 028460 162 LTEQAQRALDWAFNEKLKSVFSVILIFSKFF 192 (208)
Q Consensus 162 ~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f 192 (208)
+|++++++|+.|..+|+.+|++||++.|+|+
T Consensus 80 ~s~~l~~il~~A~~~a~~~~~~~i~~ehlLl 110 (142)
T d1k6ka_ 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLV 110 (142)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 9999999999999999999999999776665
No 4
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]}
Probab=99.13 E-value=7e-11 Score=89.25 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=71.8
Q ss_pred chhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHH
Q 028460 51 FVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (208)
Q Consensus 51 ~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~ 130 (208)
-++....+..++..+.++|++.+... ...+++.+.+++..|..+|+.+|+.+|++||||+||+++ ++.+.++|+
T Consensus 51 g~d~~~~~~~~~~~l~~~p~~~~~~~-----~~~~s~~~~~vl~~A~~~a~~~~d~~I~~ehlLlall~~-~~~~~~~L~ 124 (139)
T d1khya_ 51 GINAGQLRTDINQALNRLPQVEGTGG-----DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALES-RGTLADILK 124 (139)
T ss_dssp TCCHHHHHHHHHHHHTTSCCC------------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTS-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhccccccCccc-----cccccHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHcC-CcHHHHHHH
Confidence 34456677788888888887654211 125899999999999999999999999999999999975 578899999
Q ss_pred HcCCCHHHHHHHHH
Q 028460 131 ANGITLFKVREETL 144 (208)
Q Consensus 131 ~~GVd~~~lr~~le 144 (208)
+.|||++.+++.|+
T Consensus 125 ~~gi~~~~l~~~i~ 138 (139)
T d1khya_ 125 AAGATTANITQAIE 138 (139)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhc
Confidence 99999999999886
No 5
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Probab=99.03 E-value=4e-10 Score=85.23 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=57.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHH
Q 028460 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144 (208)
Q Consensus 84 ~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le 144 (208)
.+|+++.+++..|..+|+++|+.+|++||||+||+.++++.+.++|++.||+.+++.+.|.
T Consensus 79 ~~s~~l~~il~~A~~~a~~~~~~~i~~ehlLlall~~~~~~a~~lL~~~Gi~~~~l~~~Is 139 (142)
T d1k6ka_ 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (142)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHccCcHHHHHHHHCCCCHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999988877653
No 6
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]}
Probab=98.64 E-value=3.3e-08 Score=75.71 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=67.0
Q ss_pred cchhhhccchhHHHHHhcCCccCCCCCCCCCcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 50 RFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 50 ~~~~~~~~~~~~~t~i~~~p~~~~p~~~~~~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
.-++....+..+...|.++|++.++. ... .+++.+.++|+.|..+|+++|+.||++||||+||+++++
T Consensus 50 ~gvd~~~l~~~l~~~l~~~p~~~~~~---~~~--~~s~~l~~il~~A~~~a~~~gd~~Is~ehLllal~~~~~------- 117 (145)
T d1qvra1 50 AGADPKALKELQERELARLPKVEGAE---VGQ--YLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATP------- 117 (145)
T ss_dssp TSSCHHHHHHHHHHHHHTSCCCCGGG---TTC--EECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHST-------
T ss_pred cCCCHHHHHHHHHHHhhcccccCCCc---ccC--CCCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhccc-------
Confidence 45666788889999999999876532 111 589999999999999999999999999999999999864
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 028460 130 RANGITLFKVREETLNLL 147 (208)
Q Consensus 130 ~~~GVd~~~lr~~le~~l 147 (208)
.+.+.+.+++.|+++.
T Consensus 118 --~~~~l~~l~~~i~~~R 133 (145)
T d1qvra1 118 --GLPGLEALKGALKELR 133 (145)
T ss_dssp --TSCCHHHHHHHHTSSC
T ss_pred --chhhHHHHHHHHHHHH
Confidence 2345566777766654
No 7
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.32 E-value=0.31 Score=34.52 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRA 131 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~ 131 (208)
+.++|+.|-+.|+..+...|.++|+.+|+-.|+ ...++|..
T Consensus 46 ~aEILELAgn~a~~~k~~rItprhi~lairnD~--EL~~L~~~ 86 (106)
T d1u35c1 46 TAEILELAVNAARDNKKGRVTPRHILLAVANDE--ELNQLLKG 86 (106)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSH--HHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCCeeecchhhhcccCHH--HHHHHHcC
Confidence 368899999999999999999999999998764 35666653
No 8
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=84.62 E-value=0.41 Score=33.84 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRA 131 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~ 131 (208)
+-++|+.|-+.|+..+...|++.|+.+|+-.|+ ...++|..
T Consensus 47 taEiLELAgn~a~~~k~~rItPrhi~lAirnDe--eL~~L~~~ 87 (106)
T d1tzya_ 47 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLGK 87 (106)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHTTT
T ss_pred HHHHHHHhhHHHHhcCCceecchhhhhcccCHH--HHHHHHcC
Confidence 457889999999999999999999999998764 35666643
No 9
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Probab=80.25 E-value=0.6 Score=32.69 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHH
Q 028460 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (208)
Q Consensus 89 a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL 129 (208)
+.++++.|-+.|...+...|+++|+.+|+-.|+ ...++|
T Consensus 47 ~aEILelagn~a~~~~~~rItpr~l~lai~nD~--EL~~L~ 85 (103)
T d1f66c_ 47 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 85 (103)
T ss_dssp HHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSH--HHHHHC
T ss_pred HHHHHHHhhhhhccCCCCeeechhhhccccCcH--HHHHHh
Confidence 367899999999999999999999999998764 345555
No 10
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.04 E-value=2.2 Score=32.32 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 88 RAIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 88 ~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
-+.++++.|-++|+..++..|+++|+-+|+-.|+
T Consensus 132 l~aeILelAgn~a~~~krkrItp~dI~lAi~nD~ 165 (172)
T d1q9ca_ 132 ISADILKLAGNYVRNIRHYEITKQDIKVAMCADK 165 (172)
T ss_dssp HHHHHHHHHHHHHHHHTCSBCCHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHcCCceecHHHHHHHHhCCH
Confidence 3567889999999999999999999999998764
No 11
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=62.06 E-value=6 Score=24.57 Aligned_cols=32 Identities=9% Similarity=-0.100 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 86 T~~a~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
..-...+...|...|...+...|.++|+..||
T Consensus 34 e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Al 65 (68)
T d1htaa_ 34 EEMGEEIASEAVKLAKHAGRKTIKAEDIELAR 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHH
Confidence 34566777889999999999999999999987
No 12
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=48.48 E-value=12 Score=27.58 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 88 RAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 88 ~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
++.+++..|...|...+...|+.+|+--|+-+
T Consensus 255 ~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 255 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhc
Confidence 56677888999999999999999999888754
No 13
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.80 E-value=12 Score=23.65 Aligned_cols=31 Identities=13% Similarity=-0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 91 RSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 91 ~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
.+...|.+.|++.+...|..+||..++-..+
T Consensus 37 ~l~~~A~~~a~~~~rkti~~~dl~~av~~~~ 67 (78)
T d1n1jb_ 37 ELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 67 (78)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHhcCC
Confidence 3446788889999999999999999987654
No 14
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=45.69 E-value=11 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.056 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 028460 88 RAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (208)
Q Consensus 88 ~a~~aL~~A~~~A~~~g~~~I~tEHLLlAL 117 (208)
-...+...|...|...+...|..+|+..||
T Consensus 35 Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al 64 (66)
T d1ku5a_ 35 YAIEIAKKAVEFARHAGRKTVKVEDIKLAI 64 (66)
T ss_dssp HHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 345566788999999999999999999987
No 15
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=39.53 E-value=57 Score=23.04 Aligned_cols=72 Identities=11% Similarity=-0.023 Sum_probs=50.1
Q ss_pred CcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCC---CCC---CCCCCCCHHHHHHHHHHHHHHH
Q 028460 107 NTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLF---FFS---PERPPLTEQAQRALDWAFNEKL 178 (208)
Q Consensus 107 ~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~---~~~---~~~~~~S~~lkrVLe~A~~~A~ 178 (208)
.....|+|..|-..+.-....+-+..+++...+-..+..+..++-.. .+. ...+.+|+.-+++++.+.....
T Consensus 40 t~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~ 117 (162)
T d2fxaa1 40 NINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFD 117 (162)
T ss_dssp CHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhhhccCCCcCHHHHHHHHcCCchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHHHHHHHHH
Confidence 34456677777666655689999999999999999888877653211 010 1237789999999988765543
No 16
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=38.72 E-value=20 Score=26.15 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHh
Q 028460 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGIL 118 (208)
Q Consensus 87 ~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL 118 (208)
.++.+++..|...|...+...|+.+|+-.|+-
T Consensus 240 R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~ 271 (276)
T d1fnna2 240 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 271 (276)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 35677788888899999999999999887763
No 17
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.30 E-value=44 Score=21.31 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 94 AMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 94 ~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
..|.+.|...+...|.++|++.|+-+.+
T Consensus 43 ~~A~~~a~~~~rKTI~~~dv~~Al~~~~ 70 (87)
T d1n1ja_ 43 SEASERCHQEKRKTINGEDILFAMSTLG 70 (87)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHcC
Confidence 6788889999999999999999997765
No 18
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=35.84 E-value=18 Score=25.96 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 86 T~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
..-+.++++.|...|...+...|.++|+.+|+-.
T Consensus 110 E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~ 143 (151)
T d1f1ea_ 110 CRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 4456778889999999999999999999999854
No 19
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=32.20 E-value=32 Score=22.19 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 028460 94 AMAELEARKLKYPNTGTEAFLMGILVE 120 (208)
Q Consensus 94 ~~A~~~A~~~g~~~I~tEHLLlALL~e 120 (208)
..|...|.+.+...|..+|++.||=+-
T Consensus 40 ~~A~~~a~~~~rKtI~~~dv~~Al~~~ 66 (89)
T d2bykb1 40 SSSTALAHKQNHKTITAKDILQTLTEL 66 (89)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence 457778899999999999999998543
No 20
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=31.05 E-value=63 Score=20.88 Aligned_cols=64 Identities=8% Similarity=-0.124 Sum_probs=48.0
Q ss_pred hhcHHHHHHHHHHHHHHHHcCC--CCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcC
Q 028460 84 KWSARAIRSFAMAELEARKLKY--PNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (208)
Q Consensus 84 ~fT~~a~~aL~~A~~~A~~~g~--~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k 149 (208)
.+-....+.|....+.|++.|. ...+++.+...|+.-- ....++.+.|.+.+.+.+.++..+.-
T Consensus 49 ~~~~~~~~~l~~~l~~a~~~Gel~~~~d~~~lA~~l~~~~--~Gl~~~ar~g~~~~~L~~~~~~al~~ 114 (116)
T d2i10a2 49 AAREQMRQTVLDRFEKALADGDLPAGTDCTALARYVMAAV--YGLSVEAASGAPREELTAAAILAAQV 114 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH--HHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4456677777777788877776 5688888877776542 35678899999999999988876653
No 21
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.28 E-value=13 Score=22.91 Aligned_cols=27 Identities=7% Similarity=-0.161 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 028460 90 IRSFAMAELEARKLKYPNTGTEAFLMG 116 (208)
Q Consensus 90 ~~aL~~A~~~A~~~g~~~I~tEHLLlA 116 (208)
.++.+.|.+.|+..+...|..+||..+
T Consensus 38 ~~l~~~A~~~a~~~krktI~~~dl~~a 64 (66)
T d1jfia_ 38 ESLLKKACQVTQSRNAKTMTTSHLKQC 64 (66)
T ss_dssp HHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 445577888899999999999999865
No 22
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=29.75 E-value=18 Score=23.35 Aligned_cols=37 Identities=5% Similarity=-0.158 Sum_probs=32.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~ 119 (208)
+-+...+.++++.|...|...+-..|+++-+.+||=.
T Consensus 37 ~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr 73 (82)
T d2huec1 37 GVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHh
Confidence 3457788999999999999999999999999999843
No 23
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=28.74 E-value=90 Score=21.89 Aligned_cols=90 Identities=11% Similarity=-0.127 Sum_probs=53.8
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC-------------CchHHHHHHHcCCCH--HHHHHHHHHHh
Q 028460 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEG-------------TSTTAKFLRANGITL--FKVREETLNLL 147 (208)
Q Consensus 83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~-------------~s~a~~iL~~~GVd~--~~lr~~le~~l 147 (208)
+...+-+..+-..|..+|...+...|.++|+-.++-... ...+.++++..|+.. .+....+...
T Consensus 30 ~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~~~~~~~~~~fp~a~IkRi~k~~g~~ris~dA~~~l~~~- 108 (151)
T d1f1ea_ 30 DFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKL- 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccccccccCccCHHHHHHHHHcCCcchhhHHHHHHHHHH-
Confidence 344566666778899999999999999999988853221 012334444444320 1111111111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCceEeE
Q 028460 148 GKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILI 187 (208)
Q Consensus 148 ~k~~~~~~~~~~~~~S~~lkrVLe~A~~~A~~~Gd~~Isi 187 (208)
...-+..+++.|...|...+...|..
T Consensus 109 --------------~E~fi~~l~~~A~~~a~~~kRkTI~~ 134 (151)
T d1f1ea_ 109 --------------ICRATEELGEKAAEYADEDGRKTVQG 134 (151)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCCCcCCH
Confidence 12334667788888888888877753
No 24
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.81 E-value=42 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCC
Q 028460 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151 (208)
Q Consensus 110 tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~ 151 (208)
..-++++|+..+...+..+-+..|++...+...++.+..++-
T Consensus 22 e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~Gl 63 (109)
T d1sfxa_ 22 DVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCcchHHHHHHHHHhCCC
Confidence 345677788877778899999999999999999999887653
No 25
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=23.65 E-value=70 Score=18.93 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCC
Q 028460 112 AFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS 150 (208)
Q Consensus 112 HLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~ 150 (208)
++|..|-+++.-....+-+..|++...+...+++....+
T Consensus 9 ~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~g 47 (63)
T d2cfxa1 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (63)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456666666666678899999999999999999887654
No 26
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.00 E-value=86 Score=20.72 Aligned_cols=70 Identities=13% Similarity=-0.030 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCC-CCC-----CCCCCCHHHHHHHHHHHHHHHH
Q 028460 110 TEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFF-FSP-----ERPPLTEQAQRALDWAFNEKLK 179 (208)
Q Consensus 110 tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~-~~~-----~~~~~S~~lkrVLe~A~~~A~~ 179 (208)
..++|..|-..+.-....+-+..|++...+-..++....++-... ..+ ..+.+|+.-+++++.+......
T Consensus 32 q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 107 (136)
T d2fbia1 32 QWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEK 107 (136)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHHHHHHH
Confidence 445555565555556788999999999999999998877643210 011 2378899999999988766554
No 27
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.42 E-value=63 Score=22.41 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 028460 94 AMAELEARKLKYPNTGTEAFLMGILVEG 121 (208)
Q Consensus 94 ~~A~~~A~~~g~~~I~tEHLLlALL~e~ 121 (208)
..|...|.+.+...|..+|++.||-.-+
T Consensus 44 ~~A~~~a~~~~RkTi~~~Dv~~Al~~~~ 71 (135)
T d1jfib_ 44 SEANEICNKSEKKTISPEHVIQALESLG 71 (135)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 6688889999999999999999997654
Done!