Query 028461
Match_columns 208
No_of_seqs 231 out of 1343
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 100.0 9.5E-29 2.1E-33 195.0 13.4 127 78-205 3-130 (194)
2 COG1225 Bcp Peroxiredoxin [Pos 100.0 2.3E-28 4.9E-33 188.7 13.6 117 78-205 4-126 (157)
3 PRK10382 alkyl hydroperoxide r 99.9 4.4E-27 9.6E-32 188.2 13.9 124 78-205 2-125 (187)
4 PTZ00253 tryparedoxin peroxida 99.9 3.8E-26 8.3E-31 184.6 13.6 127 78-205 6-133 (199)
5 PTZ00137 2-Cys peroxiredoxin; 99.9 4.7E-26 1E-30 190.2 14.2 126 78-205 68-194 (261)
6 PRK15000 peroxidase; Provision 99.9 1.1E-25 2.4E-30 182.1 14.3 126 78-205 2-131 (200)
7 PRK13190 putative peroxiredoxi 99.9 1.3E-25 2.8E-30 182.0 14.1 122 78-205 2-123 (202)
8 TIGR03137 AhpC peroxiredoxin. 99.9 1E-25 2.2E-30 180.5 13.3 123 79-205 3-125 (187)
9 cd03013 PRX5_like Peroxiredoxi 99.9 1.6E-25 3.5E-30 174.3 13.3 118 80-205 1-128 (155)
10 PRK13191 putative peroxiredoxi 99.9 3E-25 6.6E-30 181.4 14.1 122 78-205 7-130 (215)
11 KOG0852 Alkyl hydroperoxide re 99.9 1.3E-25 2.8E-30 173.4 11.1 127 78-205 4-130 (196)
12 cd03015 PRX_Typ2cys Peroxiredo 99.9 6E-25 1.3E-29 173.7 14.4 125 80-205 1-126 (173)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.2E-24 2.7E-29 161.6 13.8 115 80-205 1-115 (124)
14 PRK13599 putative peroxiredoxi 99.9 1.5E-24 3.3E-29 177.2 14.3 123 78-205 2-125 (215)
15 PRK13189 peroxiredoxin; Provis 99.9 2.9E-24 6.2E-29 176.4 14.4 122 78-205 9-132 (222)
16 cd03014 PRX_Atyp2cys Peroxired 99.9 2.8E-24 6E-29 164.3 13.1 114 79-205 1-116 (143)
17 PRK00522 tpx lipid hydroperoxi 99.9 5E-24 1.1E-28 167.8 13.8 115 78-205 18-137 (167)
18 cd03018 PRX_AhpE_like Peroxire 99.9 4E-24 8.6E-29 164.1 12.9 118 78-205 1-120 (149)
19 cd03016 PRX_1cys Peroxiredoxin 99.9 4.6E-24 9.9E-29 173.0 13.7 121 80-205 1-123 (203)
20 PRK09437 bcp thioredoxin-depen 99.9 1.1E-22 2.3E-27 157.6 13.4 105 78-193 4-108 (154)
21 cd03017 PRX_BCP Peroxiredoxin 99.9 5.3E-22 1.2E-26 150.6 12.3 101 82-193 1-101 (140)
22 cd02970 PRX_like2 Peroxiredoxi 99.9 3.9E-22 8.5E-27 152.5 11.0 100 83-192 1-100 (149)
23 PF08534 Redoxin: Redoxin; In 99.9 9E-22 1.9E-26 150.8 12.8 104 79-191 1-104 (146)
24 cd02971 PRX_family Peroxiredox 99.9 2.1E-21 4.5E-26 147.3 12.7 113 83-205 1-116 (140)
25 KOG0855 Alkyl hydroperoxide re 99.9 1.2E-20 2.5E-25 145.0 12.5 118 78-205 63-181 (211)
26 PLN02399 phospholipid hydroper 99.8 1.4E-19 3E-24 149.5 13.9 101 78-190 73-185 (236)
27 cd00340 GSH_Peroxidase Glutath 99.8 8E-20 1.7E-24 141.5 9.4 94 84-190 2-107 (152)
28 PTZ00056 glutathione peroxidas 99.8 3.6E-19 7.8E-24 144.0 11.5 90 78-179 13-110 (199)
29 cd02969 PRX_like1 Peroxiredoxi 99.8 1E-18 2.2E-23 137.6 11.3 102 81-194 1-111 (171)
30 PTZ00256 glutathione peroxidas 99.8 7.7E-19 1.7E-23 140.2 9.5 98 80-188 16-125 (183)
31 PLN02412 probable glutathione 99.8 9.8E-19 2.1E-23 137.7 9.7 99 82-192 7-117 (167)
32 cd02968 SCO SCO (an acronym fo 99.8 3E-18 6.6E-23 130.2 11.9 100 83-194 1-111 (142)
33 KOG0854 Alkyl hydroperoxide re 99.8 1.1E-18 2.5E-23 135.1 9.3 124 78-205 6-137 (224)
34 TIGR02540 gpx7 putative glutat 99.8 9.9E-19 2.1E-23 135.5 9.0 83 85-179 3-94 (153)
35 PRK03147 thiol-disulfide oxido 99.8 5.9E-18 1.3E-22 132.9 13.2 105 75-191 32-137 (173)
36 cd03012 TlpA_like_DipZ_like Tl 99.8 2.4E-18 5.3E-23 129.0 9.7 86 97-191 13-104 (126)
37 COG0678 AHP1 Peroxiredoxin [Po 99.7 2.6E-17 5.6E-22 124.5 9.5 113 78-196 3-122 (165)
38 TIGR02661 MauD methylamine deh 99.7 3.5E-17 7.6E-22 131.3 11.0 98 78-191 46-145 (189)
39 COG2077 Tpx Peroxiredoxin [Pos 99.7 7.5E-17 1.6E-21 122.3 11.0 121 72-205 13-137 (158)
40 PRK15412 thiol:disulfide inter 99.7 2.4E-17 5.2E-22 131.8 8.4 103 78-194 39-144 (185)
41 cd03010 TlpA_like_DsbE TlpA-li 99.7 6.1E-17 1.3E-21 121.2 10.0 97 82-193 1-101 (127)
42 cd02967 mauD Methylamine utili 99.7 1.8E-16 3.9E-21 116.2 12.2 92 85-191 1-94 (114)
43 TIGR00385 dsbE periplasmic pro 99.7 1.1E-16 2.4E-21 126.5 9.5 99 78-192 34-137 (173)
44 cd02966 TlpA_like_family TlpA- 99.7 1.6E-15 3.5E-20 109.3 10.9 94 86-191 1-96 (116)
45 KOG0541 Alkyl hydroperoxide re 99.7 6.1E-16 1.3E-20 117.8 8.8 112 77-194 8-126 (171)
46 cd03008 TryX_like_RdCVF Trypar 99.6 7.3E-16 1.6E-20 118.6 8.8 85 98-191 16-111 (146)
47 PRK10606 btuE putative glutath 99.6 1.8E-15 4E-20 120.7 9.9 86 82-180 3-97 (183)
48 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.7E-15 5.9E-20 111.3 10.1 91 85-192 1-93 (123)
49 PRK14018 trifunctional thiored 99.6 3.3E-15 7.2E-20 135.5 11.4 101 78-192 32-139 (521)
50 PLN02919 haloacid dehalogenase 99.6 3.1E-15 6.7E-20 146.3 10.9 117 66-192 379-502 (1057)
51 cd03009 TryX_like_TryX_NRX Try 99.6 9.7E-15 2.1E-19 109.8 8.1 92 94-191 5-98 (131)
52 cd02964 TryX_like_family Trypa 99.5 2.9E-14 6.2E-19 107.7 8.2 88 94-192 5-99 (132)
53 TIGR01626 ytfJ_HI0045 conserve 99.5 1E-13 2.3E-18 110.4 10.1 107 78-193 23-146 (184)
54 PRK13728 conjugal transfer pro 99.4 4.3E-13 9.3E-18 106.4 9.1 83 78-190 49-132 (181)
55 PF13905 Thioredoxin_8: Thiore 99.3 5.3E-12 1.1E-16 89.5 8.1 78 107-192 1-82 (95)
56 PF02630 SCO1-SenC: SCO1/SenC; 99.2 3.3E-11 7.3E-16 95.4 8.5 101 80-192 28-138 (174)
57 KOG2792 Putative cytochrome C 99.2 1E-10 2.2E-15 96.2 8.0 115 85-208 120-248 (280)
58 COG1999 Uncharacterized protei 99.1 7.3E-10 1.6E-14 90.2 12.0 100 86-192 49-155 (207)
59 TIGR02738 TrbB type-F conjugat 99.0 6.4E-10 1.4E-14 86.4 6.9 49 96-153 43-91 (153)
60 cd02985 TRX_CDSP32 TRX family, 98.9 1.5E-09 3.1E-14 78.6 5.5 68 103-178 11-78 (103)
61 KOG2501 Thioredoxin, nucleored 98.8 1.6E-08 3.5E-13 78.0 7.9 89 94-191 19-114 (157)
62 cd02950 TxlA TRX-like protein 98.8 4.7E-09 1E-13 80.5 4.6 80 96-183 7-88 (142)
63 TIGR02740 TraF-like TraF-like 98.8 6.9E-09 1.5E-13 87.8 4.8 52 97-153 156-207 (271)
64 cd02999 PDI_a_ERp44_like PDIa 98.7 1.7E-08 3.6E-13 72.8 5.3 69 103-181 14-82 (100)
65 cd02948 TRX_NDPK TRX domain, T 98.6 8.4E-08 1.8E-12 69.1 5.9 45 107-153 17-61 (102)
66 PF00255 GSHPx: Glutathione pe 98.6 4.3E-07 9.3E-12 66.4 9.1 81 86-178 3-91 (108)
67 COG0386 BtuE Glutathione perox 98.6 2.3E-07 5.1E-12 71.1 8.0 83 84-178 5-95 (162)
68 cd02953 DsbDgamma DsbD gamma f 98.6 3.7E-07 8E-12 65.7 7.8 70 107-183 11-85 (104)
69 PF00837 T4_deiodinase: Iodoth 98.6 2.1E-07 4.5E-12 76.5 7.1 116 78-202 73-212 (237)
70 cd02963 TRX_DnaJ TRX domain, D 98.5 3E-07 6.4E-12 67.4 5.8 66 105-179 22-87 (111)
71 cd02993 PDI_a_APS_reductase PD 98.4 5.6E-07 1.2E-11 65.5 6.3 69 106-182 20-89 (109)
72 cd02956 ybbN ybbN protein fami 98.4 7E-07 1.5E-11 63.1 6.5 66 106-181 11-76 (96)
73 KOG0907 Thioredoxin [Posttrans 98.4 3.1E-07 6.7E-12 67.0 4.5 49 109-163 22-70 (106)
74 cd03000 PDI_a_TMX3 PDIa family 98.4 1E-06 2.2E-11 63.4 6.9 65 107-179 14-80 (104)
75 cd02951 SoxW SoxW family; SoxW 98.4 8.2E-07 1.8E-11 66.0 6.6 67 109-181 15-94 (125)
76 cd02962 TMX2 TMX2 family; comp 98.4 4.7E-07 1E-11 70.2 5.1 73 109-189 48-126 (152)
77 cd02954 DIM1 Dim1 family; Dim1 98.4 9.7E-07 2.1E-11 65.1 5.7 72 109-190 15-87 (114)
78 cd03002 PDI_a_MPD1_like PDI fa 98.3 1.9E-06 4.2E-11 62.1 7.1 68 107-182 18-85 (109)
79 cd02952 TRP14_like Human TRX-r 98.3 8.8E-07 1.9E-11 65.9 5.3 68 106-180 20-99 (119)
80 cd02959 ERp19 Endoplasmic reti 98.3 9.3E-07 2E-11 65.5 4.8 75 103-186 15-91 (117)
81 PRK09381 trxA thioredoxin; Pro 98.3 7E-07 1.5E-11 64.7 3.9 63 109-180 22-84 (109)
82 PF05988 DUF899: Bacterial pro 98.3 1.5E-05 3.2E-10 64.5 10.9 104 80-194 42-151 (211)
83 cd02998 PDI_a_ERp38 PDIa famil 98.2 2.4E-06 5.2E-11 60.8 5.5 66 110-182 20-86 (105)
84 cd03003 PDI_a_ERdj5_N PDIa fam 98.2 5.8E-06 1.3E-10 59.0 7.0 61 109-178 19-79 (101)
85 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 6.1E-06 1.3E-10 59.1 7.0 64 109-181 20-83 (104)
86 cd03005 PDI_a_ERp46 PDIa famil 98.2 2E-06 4.3E-11 61.1 4.4 42 110-152 18-61 (102)
87 PHA02278 thioredoxin-like prot 98.2 2.2E-06 4.7E-11 62.2 4.6 75 109-189 15-90 (103)
88 cd03006 PDI_a_EFP1_N PDIa fami 98.2 5.5E-06 1.2E-10 61.1 6.5 44 107-152 28-71 (113)
89 cd02997 PDI_a_PDIR PDIa family 98.2 3.7E-06 8.1E-11 59.8 5.4 69 107-183 17-86 (104)
90 cd02986 DLP Dim1 family, Dim1- 98.2 9.6E-06 2.1E-10 59.7 7.3 65 106-180 13-78 (114)
91 PRK10996 thioredoxin 2; Provis 98.2 4E-06 8.8E-11 63.9 5.4 64 109-181 53-116 (139)
92 KOG0910 Thioredoxin-like prote 98.1 2.6E-06 5.6E-11 65.3 4.0 73 109-190 62-134 (150)
93 cd02984 TRX_PICOT TRX domain, 98.1 4.5E-06 9.8E-11 58.8 4.4 63 109-180 15-77 (97)
94 cd02994 PDI_a_TMX PDIa family, 98.1 1.3E-05 2.8E-10 57.1 6.7 64 111-183 19-82 (101)
95 cd02949 TRX_NTR TRX domain, no 98.0 9.3E-06 2E-10 57.7 5.3 64 109-181 14-77 (97)
96 PTZ00051 thioredoxin; Provisio 98.0 7.5E-06 1.6E-10 57.9 4.4 61 109-179 19-79 (98)
97 TIGR01126 pdi_dom protein disu 98.0 2.7E-05 5.8E-10 55.0 7.3 69 106-183 12-81 (102)
98 cd02996 PDI_a_ERp44 PDIa famil 98.0 2.5E-05 5.5E-10 56.4 7.3 62 109-178 19-85 (108)
99 KOG1651 Glutathione peroxidase 98.0 1.3E-05 2.7E-10 62.3 5.6 65 82-151 12-76 (171)
100 cd02961 PDI_a_family Protein D 98.0 2.4E-05 5.1E-10 54.6 6.7 65 110-182 17-82 (101)
101 PLN00410 U5 snRNP protein, DIM 98.0 1.5E-05 3.3E-10 61.0 6.0 52 107-163 22-73 (142)
102 TIGR01068 thioredoxin thioredo 98.0 1.7E-05 3.7E-10 55.7 5.8 72 109-189 15-86 (101)
103 PF00085 Thioredoxin: Thioredo 98.0 3.1E-05 6.8E-10 54.6 7.2 66 109-183 18-83 (103)
104 cd02992 PDI_a_QSOX PDIa family 98.0 3.5E-05 7.6E-10 56.7 7.3 67 109-181 20-88 (114)
105 cd03001 PDI_a_P5 PDIa family, 98.0 4E-05 8.8E-10 54.4 7.4 64 109-181 19-82 (103)
106 TIGR01295 PedC_BrcD bacterioci 98.0 1.5E-05 3.2E-10 59.5 5.1 40 109-152 24-63 (122)
107 cd02957 Phd_like Phosducin (Ph 97.9 2.1E-05 4.6E-10 57.6 5.3 60 109-179 25-84 (113)
108 TIGR00424 APS_reduc 5'-adenyly 97.9 3.6E-05 7.9E-10 69.6 7.6 45 106-152 370-414 (463)
109 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 1.5E-05 3.3E-10 56.5 4.3 43 109-152 19-62 (104)
110 PF13098 Thioredoxin_2: Thiore 97.9 1.6E-05 3.6E-10 57.5 4.2 45 107-154 5-52 (112)
111 cd02975 PfPDO_like_N Pyrococcu 97.9 3.9E-05 8.5E-10 56.3 6.1 66 106-181 20-85 (113)
112 cd01659 TRX_superfamily Thiore 97.8 0.00012 2.5E-09 45.6 6.5 62 112-180 1-62 (69)
113 cd02947 TRX_family TRX family; 97.8 0.00013 2.9E-09 49.6 7.2 64 109-182 11-74 (93)
114 cd02955 SSP411 TRX domain, SSP 97.8 0.00012 2.6E-09 54.8 7.3 80 106-188 14-97 (124)
115 PRK00293 dipZ thiol:disulfide 97.8 8.2E-05 1.8E-09 69.2 7.6 74 103-184 470-547 (571)
116 cd02989 Phd_like_TxnDC9 Phosdu 97.7 0.00013 2.9E-09 53.5 7.1 72 109-190 23-94 (113)
117 PF13911 AhpC-TSA_2: AhpC/TSA 97.7 0.00012 2.6E-09 53.6 6.2 55 131-192 2-56 (115)
118 PF13728 TraF: F plasmid trans 97.7 0.00015 3.2E-09 59.4 7.2 48 100-152 113-160 (215)
119 PLN02309 5'-adenylylsulfate re 97.7 0.00017 3.6E-09 65.3 7.7 43 107-151 365-407 (457)
120 PTZ00443 Thioredoxin domain-co 97.6 0.0002 4.3E-09 59.0 7.1 61 110-179 54-114 (224)
121 COG0526 TrxA Thiol-disulfide i 97.6 0.0002 4.4E-09 50.1 6.1 48 101-151 26-73 (127)
122 cd02965 HyaE HyaE family; HyaE 97.5 0.00023 5E-09 52.3 5.7 63 106-178 26-90 (111)
123 COG4312 Uncharacterized protei 97.5 0.00042 9.2E-09 56.2 7.3 91 98-196 62-159 (247)
124 TIGR02739 TraF type-F conjugat 97.5 0.0003 6.5E-09 59.0 6.7 48 100-152 143-190 (256)
125 TIGR00411 redox_disulf_1 small 97.4 0.00051 1.1E-08 46.6 5.9 40 111-152 2-41 (82)
126 cd02982 PDI_b'_family Protein 97.4 0.0005 1.1E-08 48.8 6.1 51 107-163 12-62 (103)
127 cd02987 Phd_like_Phd Phosducin 97.4 0.00029 6.2E-09 55.9 5.1 40 110-152 85-124 (175)
128 COG3118 Thioredoxin domain-con 97.4 0.00044 9.6E-09 58.7 6.2 42 109-152 44-85 (304)
129 PTZ00102 disulphide isomerase; 97.3 0.0002 4.4E-09 64.6 4.2 69 107-184 375-444 (477)
130 PF13899 Thioredoxin_7: Thiore 97.3 0.0013 2.8E-08 45.2 6.7 64 106-180 16-82 (82)
131 KOG4498 Uncharacterized conser 97.2 0.00085 1.8E-08 53.3 6.1 89 94-189 36-124 (197)
132 TIGR01130 ER_PDI_fam protein d 97.2 0.00073 1.6E-08 60.4 6.5 43 109-152 19-63 (462)
133 PRK13703 conjugal pilus assemb 97.2 0.00036 7.7E-09 58.3 4.1 47 101-152 137-183 (248)
134 PTZ00062 glutaredoxin; Provisi 97.2 0.00065 1.4E-08 55.2 5.0 40 109-151 18-57 (204)
135 cd03065 PDI_b_Calsequestrin_N 97.1 0.0023 5E-08 47.6 7.3 64 108-179 27-95 (120)
136 cd02973 TRX_GRX_like Thioredox 97.1 0.0028 6E-08 41.5 6.8 38 112-152 3-40 (67)
137 cd02988 Phd_like_VIAF Phosduci 97.1 0.00065 1.4E-08 54.7 4.4 41 109-152 103-143 (192)
138 TIGR00412 redox_disulf_2 small 97.1 0.0011 2.5E-08 45.0 5.0 39 112-154 2-40 (76)
139 PTZ00102 disulphide isomerase; 97.0 0.001 2.2E-08 60.1 5.2 65 109-181 50-116 (477)
140 TIGR02187 GlrX_arch Glutaredox 96.8 0.0023 4.9E-08 52.2 5.4 65 105-177 17-83 (215)
141 PF14595 Thioredoxin_9: Thiore 96.8 0.00045 9.7E-09 52.1 1.0 71 103-182 37-108 (129)
142 TIGR02200 GlrX_actino Glutared 96.8 0.0038 8.3E-08 41.6 5.4 55 112-178 2-56 (77)
143 TIGR01130 ER_PDI_fam protein d 96.8 0.0025 5.4E-08 57.0 5.7 44 109-153 365-410 (462)
144 PF04592 SelP_N: Selenoprotein 96.7 0.0093 2E-07 49.1 7.8 99 82-194 8-112 (238)
145 cd03026 AhpF_NTD_C TRX-GRX-lik 96.6 0.0086 1.9E-07 42.1 6.5 64 103-177 8-71 (89)
146 KOG0908 Thioredoxin-like prote 96.6 0.0025 5.5E-08 52.9 3.8 43 107-152 20-62 (288)
147 cd02958 UAS UAS family; UAS is 96.5 0.012 2.6E-07 42.9 6.8 72 106-185 16-91 (114)
148 cd02960 AGR Anterior Gradient 96.5 0.0037 8E-08 47.2 4.0 73 105-187 21-95 (130)
149 COG4232 Thiol:disulfide interc 96.2 0.0075 1.6E-07 55.6 4.8 73 104-182 471-545 (569)
150 TIGR02187 GlrX_arch Glutaredox 96.1 0.032 7E-07 45.4 8.1 60 110-179 135-194 (215)
151 smart00594 UAS UAS domain. 96.0 0.038 8.2E-07 40.9 7.3 69 106-182 26-97 (122)
152 TIGR02196 GlrX_YruB Glutaredox 96.0 0.037 8E-07 36.0 6.5 55 112-180 2-57 (74)
153 PHA02125 thioredoxin-like prot 95.8 0.02 4.3E-07 38.6 4.5 22 112-134 2-23 (75)
154 KOG0190 Protein disulfide isom 95.5 0.012 2.6E-07 53.6 3.4 33 107-141 384-416 (493)
155 TIGR02180 GRX_euk Glutaredoxin 95.4 0.034 7.3E-07 37.6 4.6 35 113-151 2-36 (84)
156 KOG0190 Protein disulfide isom 95.2 0.03 6.5E-07 51.1 4.8 55 107-163 41-95 (493)
157 cd02976 NrdH NrdH-redoxin (Nrd 94.4 0.21 4.5E-06 32.3 6.3 56 113-181 3-58 (73)
158 cd03007 PDI_a_ERp29_N PDIa fam 94.4 0.26 5.6E-06 36.4 7.2 52 109-163 19-74 (116)
159 PF09695 YtfJ_HI0045: Bacteria 94.1 0.55 1.2E-05 36.5 8.7 111 78-192 1-123 (160)
160 cd02066 GRX_family Glutaredoxi 94.0 0.17 3.7E-06 32.5 5.1 52 118-181 7-58 (72)
161 PRK11200 grxA glutaredoxin 1; 94.0 0.23 4.9E-06 34.1 5.9 38 112-152 3-40 (85)
162 PF06110 DUF953: Eukaryotic pr 93.8 0.12 2.7E-06 38.3 4.5 45 106-152 18-68 (119)
163 KOG0191 Thioredoxin/protein di 93.6 0.21 4.6E-06 44.2 6.6 50 109-163 48-97 (383)
164 KOG3425 Uncharacterized conser 93.4 0.14 3E-06 38.0 4.1 52 106-162 24-82 (128)
165 PHA03050 glutaredoxin; Provisi 93.2 0.22 4.9E-06 36.2 5.1 22 112-134 15-36 (108)
166 TIGR02190 GlrX-dom Glutaredoxi 92.8 0.28 6E-06 33.2 4.8 55 112-180 10-64 (79)
167 PF00462 Glutaredoxin: Glutare 92.2 0.44 9.5E-06 30.2 4.9 53 113-178 2-54 (60)
168 PRK10329 glutaredoxin-like pro 92.0 0.57 1.2E-05 32.1 5.6 52 117-181 7-58 (81)
169 TIGR02189 GlrX-like_plant Glut 91.7 0.47 1E-05 33.8 5.1 58 110-178 9-66 (99)
170 TIGR02183 GRXA Glutaredoxin, G 91.4 0.58 1.3E-05 32.3 5.1 34 116-151 5-38 (86)
171 TIGR02194 GlrX_NrdH Glutaredox 91.4 0.34 7.4E-06 32.1 3.8 52 116-180 4-55 (72)
172 COG0695 GrxC Glutaredoxin and 91.1 0.77 1.7E-05 31.4 5.5 52 118-181 8-61 (80)
173 PF07976 Phe_hydrox_dim: Pheno 91.0 1.3 2.8E-05 34.8 7.4 113 78-193 30-167 (169)
174 cd03023 DsbA_Com1_like DsbA fa 90.7 0.53 1.2E-05 35.1 4.8 36 110-148 7-42 (154)
175 cd03419 GRX_GRXh_1_2_like Glut 90.6 0.58 1.3E-05 31.3 4.5 34 113-152 3-36 (82)
176 TIGR00365 monothiol glutaredox 90.3 0.79 1.7E-05 32.5 5.1 59 110-180 13-74 (97)
177 PF13462 Thioredoxin_4: Thiore 90.2 0.89 1.9E-05 34.4 5.7 49 100-150 5-54 (162)
178 cd03029 GRX_hybridPRX5 Glutare 90.1 0.99 2.1E-05 29.7 5.2 30 118-154 8-37 (72)
179 cd03028 GRX_PICOT_like Glutare 89.5 1.2 2.6E-05 31.0 5.4 57 110-179 9-69 (90)
180 cd03418 GRX_GRXb_1_3_like Glut 89.2 2 4.3E-05 28.2 6.2 52 117-180 6-58 (75)
181 KOG0191 Thioredoxin/protein di 89.1 1.3 2.7E-05 39.2 6.6 41 110-151 164-205 (383)
182 KOG0912 Thiol-disulfide isomer 87.5 0.82 1.8E-05 39.4 4.1 41 110-151 15-57 (375)
183 PRK10638 glutaredoxin 3; Provi 87.2 2.2 4.7E-05 28.9 5.5 51 117-179 8-58 (83)
184 cd03027 GRX_DEP Glutaredoxin ( 86.8 3 6.5E-05 27.4 5.9 28 118-152 8-35 (73)
185 PF13778 DUF4174: Domain of un 86.2 1.4 3.1E-05 32.5 4.3 86 101-190 2-97 (118)
186 PRK10824 glutaredoxin-4; Provi 85.4 0.99 2.1E-05 33.3 3.1 49 107-163 13-65 (115)
187 PF03190 Thioredox_DsbH: Prote 83.8 1.9 4.1E-05 33.8 4.2 79 100-183 30-114 (163)
188 KOG1731 FAD-dependent sulfhydr 83.6 0.32 7E-06 45.0 -0.1 44 110-154 59-104 (606)
189 PRK10954 periplasmic protein d 83.3 2.2 4.7E-05 34.4 4.6 42 106-150 36-80 (207)
190 PRK01655 spxA transcriptional 82.5 1.8 3.9E-05 32.4 3.6 64 114-191 3-70 (131)
191 KOG4277 Uncharacterized conser 81.6 0.76 1.7E-05 39.5 1.3 41 104-145 39-79 (468)
192 TIGR02181 GRX_bact Glutaredoxi 81.6 3.7 8E-05 27.3 4.6 29 117-152 5-33 (79)
193 COG2179 Predicted hydrolase of 81.1 3.7 8.1E-05 32.3 4.9 38 126-163 46-83 (175)
194 PF05768 DUF836: Glutaredoxin- 80.2 3.1 6.8E-05 28.2 3.9 53 116-181 5-57 (81)
195 COG1651 DsbG Protein-disulfide 80.2 6 0.00013 32.4 6.2 49 94-144 71-119 (244)
196 cd02977 ArsC_family Arsenate R 79.5 2.1 4.6E-05 30.5 2.9 62 115-190 3-68 (105)
197 PRK10877 protein disulfide iso 79.1 3.5 7.5E-05 34.0 4.5 37 106-148 106-142 (232)
198 cd03036 ArsC_like Arsenate Red 79.1 2.2 4.8E-05 30.9 3.0 42 115-163 3-48 (111)
199 cd03032 ArsC_Spx Arsenate Redu 79.0 3.3 7.1E-05 30.1 3.9 63 115-191 4-70 (115)
200 cd03019 DsbA_DsbA DsbA family, 77.5 5 0.00011 30.7 4.7 40 106-148 14-53 (178)
201 TIGR01617 arsC_related transcr 77.0 4.6 9.9E-05 29.4 4.1 60 117-190 5-68 (117)
202 cd02991 UAS_ETEA UAS family, E 76.8 8.4 0.00018 28.2 5.5 66 104-180 14-85 (116)
203 cd03020 DsbA_DsbC_DsbG DsbA fa 76.5 7.2 0.00016 30.9 5.5 25 107-133 77-101 (197)
204 PF13192 Thioredoxin_3: Thiore 76.0 10 0.00022 25.2 5.4 21 118-138 7-27 (76)
205 PRK13344 spxA transcriptional 75.9 6 0.00013 29.7 4.6 62 115-190 4-69 (132)
206 PRK12559 transcriptional regul 75.6 5 0.00011 30.1 4.1 63 115-191 4-70 (131)
207 PTZ00062 glutaredoxin; Provisi 74.3 6.2 0.00013 32.0 4.6 55 102-163 106-163 (204)
208 TIGR03143 AhpF_homolog putativ 71.6 14 0.00029 34.5 6.8 48 110-163 478-525 (555)
209 PRK12759 bifunctional gluaredo 70.8 9.2 0.0002 34.3 5.3 40 117-163 8-47 (410)
210 cd02972 DsbA_family DsbA famil 70.5 7.3 0.00016 25.9 3.7 36 113-150 2-37 (98)
211 TIGR00995 3a0901s06TIC22 chlor 69.2 16 0.00036 30.9 6.1 91 82-191 80-170 (270)
212 KOG1752 Glutaredoxin and relat 69.1 18 0.00039 26.1 5.6 14 112-126 16-29 (104)
213 PF05176 ATP-synt_10: ATP10 pr 68.4 20 0.00043 30.1 6.5 106 83-196 100-218 (252)
214 PF08821 CGGC: CGGC domain; I 67.0 18 0.00038 26.3 5.2 47 99-150 27-73 (107)
215 TIGR03759 conj_TIGR03759 integ 66.2 14 0.00029 29.9 4.8 47 111-163 111-158 (200)
216 PRK11657 dsbG disulfide isomer 63.9 14 0.00029 30.9 4.7 37 107-148 117-153 (251)
217 cd03060 GST_N_Omega_like GST_N 63.9 16 0.00035 23.5 4.2 52 117-181 5-56 (71)
218 KOG0914 Thioredoxin-like prote 61.0 12 0.00025 31.0 3.6 81 110-193 146-227 (265)
219 PRK15317 alkyl hydroperoxide r 59.0 31 0.00068 31.7 6.6 48 110-163 118-165 (517)
220 PF01106 NifU: NifU-like domai 57.7 30 0.00066 22.7 4.6 34 95-131 14-47 (68)
221 PF06053 DUF929: Domain of unk 57.6 20 0.00044 30.0 4.6 32 107-140 58-89 (249)
222 KOG0913 Thiol-disulfide isomer 56.5 3 6.5E-05 34.6 -0.5 44 106-152 39-84 (248)
223 PRK06183 mhpA 3-(3-hydroxyphen 53.2 1.2E+02 0.0026 28.0 9.4 89 78-191 411-499 (538)
224 cd03041 GST_N_2GST_N GST_N fam 53.0 53 0.0012 21.5 5.4 53 115-180 4-57 (77)
225 PRK08294 phenol 2-monooxygenas 52.7 58 0.0013 31.0 7.4 53 78-133 463-518 (634)
226 PHA03075 glutaredoxin-like pro 52.3 11 0.00023 27.9 1.8 37 110-147 3-39 (123)
227 PF02114 Phosducin: Phosducin; 52.0 34 0.00075 28.9 5.2 41 109-152 147-187 (265)
228 COG2607 Predicted ATPase (AAA+ 51.9 54 0.0012 27.7 6.1 89 110-208 87-180 (287)
229 KOG0911 Glutaredoxin-related p 51.2 20 0.00044 29.5 3.5 43 106-152 16-58 (227)
230 PF11072 DUF2859: Protein of u 50.8 78 0.0017 24.2 6.4 55 128-190 75-129 (142)
231 cd03035 ArsC_Yffb Arsenate Red 50.7 21 0.00045 25.6 3.2 42 115-163 3-48 (105)
232 PF09897 DUF2124: Uncharacteri 49.3 25 0.00054 27.0 3.5 53 118-181 89-141 (147)
233 cd03051 GST_N_GTT2_like GST_N 48.4 44 0.00095 21.1 4.3 16 118-133 6-21 (74)
234 cd02979 PHOX_C FAD-dependent P 47.8 1.3E+02 0.0028 23.3 8.9 52 81-138 1-55 (167)
235 PRK12359 flavodoxin FldB; Prov 47.5 55 0.0012 25.7 5.4 18 129-146 99-116 (172)
236 TIGR03765 ICE_PFL_4695 integra 47.2 89 0.0019 22.6 5.9 55 128-190 37-91 (105)
237 PF06953 ArsD: Arsenical resis 46.3 1.2E+02 0.0026 22.5 7.6 79 112-194 4-104 (123)
238 TIGR03140 AhpF alkyl hydropero 45.7 59 0.0013 29.9 6.1 48 110-163 119-166 (515)
239 PRK08132 FAD-dependent oxidore 45.4 78 0.0017 29.2 6.9 86 78-191 427-512 (547)
240 PF01323 DSBA: DSBA-like thior 45.3 62 0.0013 24.9 5.5 40 112-152 2-41 (193)
241 PF05673 DUF815: Protein of un 44.0 82 0.0018 26.4 6.1 46 131-180 69-114 (249)
242 KOG3414 Component of the U4/U6 43.7 90 0.002 23.6 5.6 48 109-158 24-71 (142)
243 cd02983 P5_C P5 family, C-term 43.4 1.3E+02 0.0029 22.2 7.1 52 109-163 21-75 (130)
244 COG3769 Predicted hydrolase (H 43.3 39 0.00084 28.2 3.9 43 133-181 30-72 (274)
245 TIGR01459 HAD-SF-IIA-hyp4 HAD- 43.0 1.6E+02 0.0034 24.0 7.7 41 110-152 10-50 (242)
246 COG0669 CoaD Phosphopantethein 42.1 1.5E+02 0.0032 23.2 6.8 37 113-152 4-40 (159)
247 PF03193 DUF258: Protein of un 41.7 83 0.0018 24.5 5.5 43 132-181 2-44 (161)
248 PF04278 Tic22: Tic22-like fam 41.5 72 0.0016 27.1 5.5 93 82-190 73-169 (274)
249 cd03059 GST_N_SspA GST_N famil 41.2 23 0.0005 22.6 2.0 52 117-181 5-56 (73)
250 PLN02945 nicotinamide-nucleoti 39.8 94 0.002 25.5 5.9 40 107-147 19-58 (236)
251 TIGR00612 ispG_gcpE 1-hydroxy- 38.5 1.7E+02 0.0037 25.8 7.4 63 109-181 18-80 (346)
252 cd03052 GST_N_GDAP1 GST_N fami 37.7 41 0.00088 22.0 2.8 54 118-181 6-59 (73)
253 cd03037 GST_N_GRX2 GST_N famil 37.3 1.1E+02 0.0023 19.4 5.0 27 118-151 6-32 (71)
254 COG2999 GrxB Glutaredoxin 2 [P 37.3 28 0.00061 27.9 2.2 62 113-190 3-65 (215)
255 KOG2116 Protein involved in pl 37.2 1.3E+02 0.0028 29.0 6.8 61 128-189 560-623 (738)
256 cd03045 GST_N_Delta_Epsilon GS 36.7 31 0.00066 22.1 2.1 54 118-181 6-59 (74)
257 COG2143 Thioredoxin-related pr 36.4 1.9E+02 0.0042 22.7 6.6 43 105-150 40-85 (182)
258 PLN02640 glucose-6-phosphate 1 36.0 1.1E+02 0.0023 29.0 6.2 72 78-152 59-131 (573)
259 TIGR01689 EcbF-BcbF capsule bi 35.9 1.2E+02 0.0026 22.5 5.4 36 128-163 26-76 (126)
260 PHA00649 hypothetical protein 35.7 17 0.00037 24.3 0.7 22 142-163 22-43 (83)
261 PLN03098 LPA1 LOW PSII ACCUMUL 35.4 61 0.0013 29.6 4.4 65 81-151 273-337 (453)
262 PF04723 GRDA: Glycine reducta 34.8 88 0.0019 23.9 4.4 49 113-163 33-88 (150)
263 PF02966 DIM1: Mitosis protein 34.1 1.2E+02 0.0026 23.0 5.0 44 109-154 21-64 (133)
264 KOG2961 Predicted hydrolase (H 33.9 2E+02 0.0044 22.6 6.4 49 99-150 34-89 (190)
265 PRK11509 hydrogenase-1 operon 33.9 96 0.0021 23.3 4.6 83 101-190 26-110 (132)
266 PF15092 UPF0728: Uncharacteri 33.5 1.3E+02 0.0029 20.9 4.8 43 110-152 6-48 (88)
267 cd01427 HAD_like Haloacid deha 32.9 78 0.0017 21.9 4.0 38 126-163 24-61 (139)
268 COG0694 Thioredoxin-like prote 32.8 1.2E+02 0.0027 21.4 4.7 37 95-133 28-65 (93)
269 COG1393 ArsC Arsenate reductas 32.6 54 0.0012 24.0 3.0 59 118-190 8-70 (117)
270 PF01740 STAS: STAS domain; I 31.9 1E+02 0.0022 21.7 4.4 42 109-152 49-90 (117)
271 cd01451 vWA_Magnesium_chelatas 31.9 2.3E+02 0.0049 21.7 6.7 47 132-181 122-168 (178)
272 PRK00366 ispG 4-hydroxy-3-meth 31.2 2.6E+02 0.0056 24.9 7.3 63 109-181 26-88 (360)
273 TIGR01662 HAD-SF-IIIA HAD-supe 29.8 1.5E+02 0.0032 21.3 5.0 36 128-163 27-70 (132)
274 cd03061 GST_N_CLIC GST_N famil 29.3 76 0.0016 22.2 3.2 53 120-185 21-73 (91)
275 PRK11866 2-oxoacid ferredoxin 28.5 74 0.0016 27.1 3.6 22 117-138 6-29 (279)
276 cd03056 GST_N_4 GST_N family, 28.4 54 0.0012 20.7 2.2 54 118-181 6-59 (73)
277 PF06764 DUF1223: Protein of u 28.4 1.5E+02 0.0032 24.0 5.2 36 113-151 2-37 (202)
278 COG3581 Uncharacterized protei 28.3 95 0.0021 27.9 4.2 38 112-150 73-112 (420)
279 cd00570 GST_N_family Glutathio 27.9 1E+02 0.0022 18.4 3.5 16 118-133 6-21 (71)
280 cd03423 SirA SirA (also known 27.7 1.2E+02 0.0027 19.5 3.9 39 123-163 8-49 (69)
281 PF04134 DUF393: Protein of un 27.6 67 0.0015 22.7 2.8 30 115-148 2-31 (114)
282 TIGR00067 glut_race glutamate 27.5 3.3E+02 0.0072 22.5 7.3 53 111-165 25-82 (251)
283 COG4081 Uncharacterized protei 27.0 1.7E+02 0.0037 22.2 4.8 35 111-149 5-39 (148)
284 TIGR01485 SPP_plant-cyano sucr 26.7 1.8E+02 0.0039 23.6 5.5 40 124-163 19-58 (249)
285 PF13344 Hydrolase_6: Haloacid 26.4 1.3E+02 0.0029 21.0 4.1 39 126-164 14-52 (101)
286 TIGR00377 ant_ant_sig anti-ant 26.1 2.2E+02 0.0048 19.4 5.6 11 110-121 13-23 (108)
287 TIGR03341 YhgI_GntY IscR-regul 25.9 1.3E+02 0.0027 24.1 4.3 37 95-133 124-160 (190)
288 PRK11869 2-oxoacid ferredoxin 25.9 80 0.0017 26.9 3.3 24 115-138 5-30 (280)
289 cd01450 vWFA_subfamily_ECM Von 24.8 2.5E+02 0.0055 20.2 5.7 38 110-152 105-142 (161)
290 COG0821 gcpE 1-hydroxy-2-methy 24.8 1.7E+02 0.0038 25.8 5.1 42 134-181 41-82 (361)
291 TIGR01680 Veg_Stor_Prot vegeta 24.7 1.9E+02 0.004 24.7 5.3 37 127-163 146-185 (275)
292 KOG1515 Arylacetamide deacetyl 24.6 4.8E+02 0.01 22.8 8.0 97 108-206 89-204 (336)
293 PRK10200 putative racemase; Pr 24.2 1.6E+02 0.0035 24.0 4.8 30 126-155 59-88 (230)
294 PF07555 NAGidase: beta-N-acet 24.2 1.9E+02 0.0041 25.0 5.3 56 125-180 52-114 (306)
295 PRK11190 Fe/S biogenesis prote 24.0 1.4E+02 0.003 24.0 4.2 37 95-133 125-161 (192)
296 cd01452 VWA_26S_proteasome_sub 23.8 2.5E+02 0.0055 22.3 5.7 35 129-163 123-161 (187)
297 PF04551 GcpE: GcpE protein; 23.5 3.4E+02 0.0074 24.1 6.8 68 109-181 15-82 (359)
298 PF11009 DUF2847: Protein of u 23.4 2.7E+02 0.0058 20.1 5.2 41 110-152 21-61 (105)
299 PF00702 Hydrolase: haloacid d 23.3 3.2E+02 0.007 20.9 6.3 36 128-163 129-164 (215)
300 TIGR01668 YqeG_hyp_ppase HAD s 23.3 2.3E+02 0.005 21.7 5.3 38 126-163 43-81 (170)
301 PRK10026 arsenate reductase; P 23.1 1.4E+02 0.003 22.7 3.8 39 118-163 9-51 (141)
302 COG3529 Predicted nucleic-acid 23.0 79 0.0017 20.5 2.1 28 115-147 7-34 (66)
303 TIGR02463 MPGP_rel mannosyl-3- 22.8 2.1E+02 0.0045 22.6 5.1 33 131-163 21-53 (221)
304 PRK00865 glutamate racemase; P 22.4 4.5E+02 0.0098 21.8 7.8 64 110-181 31-98 (261)
305 PF03198 Glyco_hydro_72: Gluca 22.4 1.3E+02 0.0027 26.3 3.8 46 123-181 54-100 (314)
306 PF13419 HAD_2: Haloacid dehal 22.3 1.7E+02 0.0038 21.3 4.4 36 128-163 79-114 (176)
307 PRK13738 conjugal transfer pil 22.2 4.4E+02 0.0094 21.5 7.1 77 97-193 108-184 (209)
308 TIGR02652 conserved hypothetic 22.2 30 0.00066 26.4 0.1 18 115-132 6-23 (163)
309 PF01924 HypD: Hydrogenase for 22.2 1.5E+02 0.0033 26.2 4.4 33 113-145 49-81 (355)
310 PRK04011 peptide chain release 22.1 1.4E+02 0.003 26.9 4.2 34 119-152 351-390 (411)
311 PF14427 Pput2613-deam: Pput_2 22.1 1.1E+02 0.0023 22.5 2.8 46 99-152 58-103 (118)
312 TIGR01675 plant-AP plant acid 21.9 3E+02 0.0066 22.7 5.9 38 126-163 120-160 (229)
313 PRK09628 oorB 2-oxoglutarate-a 21.4 1.1E+02 0.0023 26.1 3.2 17 110-126 8-24 (277)
314 PRK05778 2-oxoglutarate ferred 21.3 1.3E+02 0.0028 25.9 3.7 24 115-138 15-40 (301)
315 cd03053 GST_N_Phi GST_N family 21.3 1E+02 0.0023 19.6 2.6 57 115-181 4-60 (76)
316 PRK01018 50S ribosomal protein 21.2 3E+02 0.0065 19.3 6.4 53 135-190 25-77 (99)
317 cd03034 ArsC_ArsC Arsenate Red 21.2 1.1E+02 0.0024 21.9 2.9 59 118-190 6-68 (112)
318 PF09654 DUF2396: Protein of u 20.5 31 0.00068 26.3 -0.2 18 115-132 3-20 (161)
319 cd03040 GST_N_mPGES2 GST_N fam 20.4 2.4E+02 0.0053 17.9 4.7 28 118-152 7-34 (77)
320 cd09286 NMNAT_Eukarya Nicotina 20.3 1.8E+02 0.004 23.7 4.4 33 112-145 2-35 (225)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.5e-29 Score=194.96 Aligned_cols=127 Identities=54% Similarity=0.963 Sum_probs=118.8
Q ss_pred CCCCCCCCCeEEeeec-CCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhH
Q 028461 78 PLVGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~-~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~ 156 (208)
+.+|+++|+|+.+.+. +....+++++|+.|| |+||+|||++|+++|.+|+..+.+++++|+++|++||+||+|+.++|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gk-w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGK-WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCc-EEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 6799999999999762 222359999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
.+|.+..++..++++++||+++|.++++++.|||+.++.|...|++|||
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FII 130 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFII 130 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEE
Confidence 9999999999998889999999999999999999999999999999997
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-28 Score=188.72 Aligned_cols=117 Identities=40% Similarity=0.616 Sum_probs=110.9
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+++|+++|||+++ +.+|+.++|+|++|| +|||+|||.++||.|..|...|++.+++|++.|.+|||||.|+++.++
T Consensus 4 l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~ 79 (157)
T COG1225 4 LKVGDKAPDFELP---DQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHK 79 (157)
T ss_pred CCCCCcCCCeEee---cCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 8999999999998 899999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCC------CcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ------VKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~------g~~~r~~fvv 205 (208)
+|.+++ +++|++++|++++++++|||+..+. ....|.+|||
T Consensus 80 ~F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvI 126 (157)
T COG1225 80 KFAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVI 126 (157)
T ss_pred HHHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEE
Confidence 999999 8899999999999999999987653 2488999986
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.95 E-value=4.4e-27 Score=188.24 Aligned_cols=124 Identities=34% Similarity=0.666 Sum_probs=113.7
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
..+|+++|+|+...+.+.+.+.++|+|++|| ++||+|||++|||+|..|++.|.+++++|+++|++||+||.|+++.++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk-~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~ 80 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK 80 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCC-eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH
Confidence 5799999999999887788889999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
+|.++... +.+++||+++|+++++++.||++.++.|+..|++|||
T Consensus 81 a~~~~~~~---~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfII 125 (187)
T PRK10382 81 AWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVV 125 (187)
T ss_pred HHHHhhcc---ccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEE
Confidence 99987532 2368999999999999999999877777778999987
No 4
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.94 E-value=3.8e-26 Score=184.63 Aligned_cols=127 Identities=48% Similarity=0.835 Sum_probs=113.3
Q ss_pred CCCCCCCCCeEEeee-cCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhH
Q 028461 78 PLVGNTAPDFAAEAV-FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~-~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~ 156 (208)
+.+|+++|+|+++++ .+.+|++++|+|++|| ++||+|||++||++|..+++.|.+++++|+++|++||+||+|+.+.+
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk-~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCC-EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 679999999998753 2567889999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
.+|....+..++.++++||+++|+++++++.||++..+.++.+|++|||
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiI 133 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFII 133 (199)
T ss_pred HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEE
Confidence 9998765544445568999999999999999999988778888999886
No 5
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.94 E-value=4.7e-26 Score=190.25 Aligned_cols=126 Identities=43% Similarity=0.796 Sum_probs=111.1
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~ 156 (208)
+.+|+++|+|+++++.+.+++.++|+++ +|| ++||+|||++|||+|..|++.|++++++|+++|++|++||+|+++.+
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk-~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h 146 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDS-YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSH 146 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCC-eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 6899999999998543556678999998 776 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
++|.++..+..+..+++||+++|++++++++||++.. .|...|++|||
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFII 194 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLV 194 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEE
Confidence 9999875554445578999999999999999999864 57788999987
No 6
>PRK15000 peroxidase; Provisional
Probab=99.94 E-value=1.1e-25 Score=182.08 Aligned_cols=126 Identities=44% Similarity=0.753 Sum_probs=109.3
Q ss_pred CCCCCCCCCeEEeeecCCCCc---eEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh
Q 028461 78 PLVGNTAPDFAAEAVFDQEFI---NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~---~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~ 153 (208)
..+|+++|+|+++++. .+|+ ..+++++ +|| ++||+|||++|||+|+.|++.|++++++|+++|++||+||+|++
T Consensus 2 ~~vg~~aPdF~~~~~~-~~g~~~~~~~l~~~~~gk-~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVL-GSGEIVDKFNFKQHTNGK-TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeeccc-CCCceeeeeeHHHHhCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 4589999999998542 2344 3566666 676 99999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
+.+++|.+...+..++++++||+++|+++++++.|||...+.|...|++|||
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiI 131 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLI 131 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEE
Confidence 9999999876665555567999999999999999999988888889999987
No 7
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.93 E-value=1.3e-25 Score=182.04 Aligned_cols=122 Identities=39% Similarity=0.718 Sum_probs=108.4
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+.+|+++|+|+++ +..| .++|++++|| ++||+|+|++|||+|..|++.|.+++++|+++|++||+||+|+.+.++
T Consensus 2 ~~vG~~aP~F~~~---~~~g-~v~l~d~~gk-~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 2 VKLGQKAPDFTVN---TTKG-PIDLSKYKGK-WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCcEEe---cCCC-cEeHHHhCCC-EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 6899999999998 4555 6999999997 888887779999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
+|.++..+..+. .++||+++|+++++++.|||...+.|...|++|||
T Consensus 77 ~w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiI 123 (202)
T PRK13190 77 AWLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFII 123 (202)
T ss_pred HHHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEE
Confidence 999886554433 46899999999999999999877777778998886
No 8
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.93 E-value=1e-25 Score=180.51 Aligned_cols=123 Identities=39% Similarity=0.733 Sum_probs=106.9
Q ss_pred CCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHH
Q 028461 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (208)
Q Consensus 79 ~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~ 158 (208)
.+|+++|+|+++++.+.+.+.+++++++|| ++||+|||++|||+|+.|++.|++++++|+++|++||+||.|+++.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk-~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGK-WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCC-EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 579999999998432333347899999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
|.+..... .+++|++++|+++++++.|||+....++..|++|||
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiI 125 (187)
T TIGR03137 82 WHDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVI 125 (187)
T ss_pred HHhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEE
Confidence 98875322 367899999999999999999877667777888876
No 9
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.93 E-value=1.6e-25 Score=174.31 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=104.8
Q ss_pred CCCCCCCeEEeeecCCCCceEeccc-ccCCcEEEEEEEcCCCCCCChhh-HHHHHHHHHHHhhCCe-EEEEEeCCChhhH
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTE-ITAFSDRYTEFEKLNT-EILGVSTDSVFSH 156 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd-~~gk~~vlL~f~~~t~Cp~C~~~-~~~l~~~~~~~~~~gv-~vi~Vs~d~~~~~ 156 (208)
+|+++|+|++.+..+.+|+.++|++ ++|| ++||+|||++|||+|..| ++.|++.+++|++.|+ +|++||.|+++.+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk-~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGK-KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCC-cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 6999999999843333589999999 5887 899999999999999999 9999999999999999 6999999999999
Q ss_pred HHHHHHhhhcCCCCCC--cceEEEcCccHHHHHhCCccCCC--Cc---ccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDL--KYPLIADITKSISKSYGVLIPDQ--VK---KSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~--~f~~l~D~~~~v~~~~gV~~~~~--g~---~~r~~fvv 205 (208)
++|.+++ ++ +|++++|++++++++|||+.++. +. ..|++|||
T Consensus 80 ~~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiI 128 (155)
T cd03013 80 KAWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIV 128 (155)
T ss_pred HHHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEE
Confidence 9999998 44 89999999999999999987654 33 57999886
No 10
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.93 E-value=3e-25 Score=181.36 Aligned_cols=122 Identities=36% Similarity=0.657 Sum_probs=106.1
Q ss_pred CCCCCCCCCeEEeeecCCCCceEec-ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~L-sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~ 156 (208)
+.+|+++|+|+++ +.+|+ +.+ ++++|| ++||+|+|++|||+|..|++.|++++++|+++|++||+||+|+.+.+
T Consensus 7 ~~iG~~aPdF~l~---~~~G~-~~l~~~~~GK-~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 7 PLIGEKFPEMEVI---TTHGK-IKLPDDYKGR-WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred ccCCCcCCCCEee---cCCCC-EEcHHHhCCC-cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 7899999999998 55665 566 447887 89998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCC-CcccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-VKKSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~-g~~~r~~fvv 205 (208)
++|.+..++..+. +++||+++|+++++++.||++..+. +...|++|||
T Consensus 82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfII 130 (215)
T PRK13191 82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIV 130 (215)
T ss_pred HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEE
Confidence 9999876554344 6889999999999999999987543 5678999986
No 11
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=173.37 Aligned_cols=127 Identities=62% Similarity=1.013 Sum_probs=122.3
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
..+..++|+|+-..+.|+..+.++|+||+|| |+|++|||.+|+.+|+.|+-.+.+.+++|++.|.+||++|+|+.+.+.
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gk-yvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl 82 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL 82 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhccc-EEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence 4566778999999988999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
+|+..-++.+|++++++|+++|.+.++++.|||++.++|+..||+|||
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfII 130 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFII 130 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEE
Confidence 999999999999999999999999999999999999999999999997
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.93 E-value=6e-25 Score=173.72 Aligned_cols=125 Identities=62% Similarity=1.018 Sum_probs=107.7
Q ss_pred CCCCCCCeEEeeecC-CCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHH
Q 028461 80 VGNTAPDFAAEAVFD-QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (208)
Q Consensus 80 vG~~~P~f~l~~~~~-~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~ 158 (208)
+|+++|+|+++++.+ .+|+.++|++++|| ++||+||+++|||.|..+++.|++++++|.++|++||+||+|+.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk-~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK-WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCC-EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 699999999985544 44589999999997 9999999999999999999999999999999999999999999888889
Q ss_pred HHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
|.+...+..+..+++|++++|+++++++.|||..++.+...|.+|||
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lI 126 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFII 126 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEE
Confidence 98887543333468999999999999999999877666666666664
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.92 E-value=1.2e-24 Score=161.63 Aligned_cols=115 Identities=27% Similarity=0.533 Sum_probs=106.8
Q ss_pred CCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHH
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~ 159 (208)
||+++|+|+++ +.+|+.++|+|++|| ++||+||+.+|||.|..+++.|++++++|+++|++|++|+.|+.+.+++|
T Consensus 1 vG~~~P~f~l~---~~~g~~~~l~~l~gk-~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLT---DSDGKTVSLSDLKGK-PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEE---TTTSEEEEGGGGTTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHH
T ss_pred CcCCCCCcEeE---CCCCCEEEHHHHCCC-cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhh
Confidence 69999999998 888999999999987 99999997769999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCcccceEEEE
Q 028461 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
.+++ +++|++++|.++++.+.||+...+.....+.+|||
T Consensus 77 ~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~li 115 (124)
T PF00578_consen 77 LEEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLI 115 (124)
T ss_dssp HHHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEE
T ss_pred hhhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEE
Confidence 9999 78999999999999999999877666677777775
No 14
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.92 E-value=1.5e-24 Score=177.23 Aligned_cols=123 Identities=33% Similarity=0.614 Sum_probs=107.1
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
..+|+++|+|++. +.+|+.+.+++++|| ++||+|+|++|||+|..|++.|++++++|+++|++||+||+|+.+.+.
T Consensus 2 ~~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk-~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~ 77 (215)
T PRK13599 2 KLLGEKFPSMEVV---TTQGVKRLPEDYAGK-WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHI 77 (215)
T ss_pred CCCCCCCCCCEeE---CCCCcEecHHHHCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 3689999999998 678888888999998 888888889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCCc-ccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQVK-KSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g~-~~r~~fvv 205 (208)
+|.+..++..+. +++||+++|+++++++.||+..+..+. ..|++|||
T Consensus 78 ~w~~~i~~~~~~-~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfII 125 (215)
T PRK13599 78 KWVEWIKDNTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIV 125 (215)
T ss_pred HHHHhHHHhcCC-CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEE
Confidence 999876543222 678999999999999999998655443 57888886
No 15
>PRK13189 peroxiredoxin; Provisional
Probab=99.92 E-value=2.9e-24 Score=176.44 Aligned_cols=122 Identities=40% Similarity=0.755 Sum_probs=105.8
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSH 156 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~ 156 (208)
+.+|+++|+|+++ +..| .++++++ +|| ++||+|+|++|||+|..|++.|++++++|+++|++||+||+|+.+.+
T Consensus 9 ~~vG~~aPdF~~~---~~~g-~~~l~d~~~Gk-~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 9 PLIGDKFPEFEVK---TTHG-PIKLPDDYKGK-WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred ccCCCcCCCcEeE---cCCC-CEeeHHHhCCC-eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 6799999999998 4455 4788775 887 89999989999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCC-CcccceEEEE
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-VKKSLLIFTW 205 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~-g~~~r~~fvv 205 (208)
.+|.++..+..+. +++||+++|.+++++++||++.... +...|++|||
T Consensus 84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfII 132 (222)
T PRK13189 84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFII 132 (222)
T ss_pred HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEE
Confidence 9999987654444 5789999999999999999985442 3478888886
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=2.8e-24 Score=164.30 Aligned_cols=114 Identities=30% Similarity=0.507 Sum_probs=102.8
Q ss_pred CCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHH
Q 028461 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (208)
Q Consensus 79 ~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~ 158 (208)
++|+++|+|+++ +.+|+.++|++++|| ++||+||++.|||+|+.+++.|++++++++ |++||+||+|+.+.+++
T Consensus 1 ~~G~~aP~f~l~---~~~g~~~~l~~~~gk-~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~ 74 (143)
T cd03014 1 KVGDKAPDFTLV---TSDLSEVSLADFAGK-VKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKR 74 (143)
T ss_pred CCCCCCCCcEEE---CCCCcEEeHHHhCCC-eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHH
Confidence 479999999998 788999999999998 899999977779999999999999999984 89999999999999999
Q ss_pred HHHHhhhcCCCCC-CcceEEEcCc-cHHHHHhCCccCCCCcccceEEEE
Q 028461 159 WVQTDRKSGGLGD-LKYPLIADIT-KSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 159 ~~~~~~~~~~~~~-~~f~~l~D~~-~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
|.+++ + .+|++++|.+ +.+++.||++.+..+...|++|||
T Consensus 75 ~~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~ii 116 (143)
T cd03014 75 WCGAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVI 116 (143)
T ss_pred HHHhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEE
Confidence 99987 4 3799999996 999999999987777777888876
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=5e-24 Score=167.81 Aligned_cols=115 Identities=30% Similarity=0.521 Sum_probs=102.7
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+++|+++|+|+++ +.+|+.++|++++|| ++||+|||..|||+|..|++.|+++++++. |++||+||.|+++.++
T Consensus 18 ~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk-~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~ 91 (167)
T PRK00522 18 PQVGDKAPDFTLV---ANDLSDVSLADFAGK-RKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQK 91 (167)
T ss_pred CCCCCCCCCeEEE---cCCCcEEehHHhCCC-EEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHH
Confidence 7899999999998 788999999999998 899999966669999999999999999983 8999999999999999
Q ss_pred HHHHHhhhcCCCCCCc-ceEEEcC-ccHHHHHhCCccCC---CCcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLK-YPLIADI-TKSISKSYGVLIPD---QVKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~-f~~l~D~-~~~v~~~~gV~~~~---~g~~~r~~fvv 205 (208)
+|.+++ +++ +++++|. ++.+++.||+...+ .|+..|.+|||
T Consensus 92 ~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvI 137 (167)
T PRK00522 92 RFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVL 137 (167)
T ss_pred HHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEE
Confidence 999987 554 8999995 56999999998665 67788888876
No 18
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=4e-24 Score=164.15 Aligned_cols=118 Identities=40% Similarity=0.676 Sum_probs=104.1
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+++|+++|+|++. +.+|+.+++++++|++++||+||+++|||.|+.+++.|++++++++++|++||+|+.|+++.++
T Consensus 1 ~~~G~~~p~~~l~---~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFELP---DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEec---CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 4689999999998 7789999999999933899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCc--cHHHHHhCCccCCCCcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADIT--KSISKSYGVLIPDQVKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~--~~v~~~~gV~~~~~g~~~r~~fvv 205 (208)
+|.+++ +++|++++|.+ +++++.||+.....++..+.+||+
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~li 120 (149)
T cd03018 78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVI 120 (149)
T ss_pred HHHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEE
Confidence 999988 78999999988 999999999865545444555443
No 19
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.91 E-value=4.6e-24 Score=173.03 Aligned_cols=121 Identities=37% Similarity=0.677 Sum_probs=104.9
Q ss_pred CCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHH
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 159 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~ 159 (208)
+|+++|+|+++ +.+| .++|++++|++++||+|+|++|||+|..+++.|++++++|+++|++||+||+|+.+.+++|
T Consensus 1 vG~~aP~F~~~---~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEAD---TTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEe---cCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 59999999998 5555 5899999995488888888999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCC--CCcccceEEEE
Q 028461 160 VQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD--QVKKSLLIFTW 205 (208)
Q Consensus 160 ~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~--~g~~~r~~fvv 205 (208)
.++.++..+ .+++||+++|++++++++||+...+ .+...|++|||
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiI 123 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFII 123 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEE
Confidence 998765544 3789999999999999999998653 23456888876
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.89 E-value=1.1e-22 Score=157.58 Aligned_cols=105 Identities=28% Similarity=0.507 Sum_probs=98.6
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+++|+.+|+|+++ +.+|+.+++++++|| ++||+||+..|||.|+.+++.|++++++++++|++||+|+.|+++.++
T Consensus 4 ~~~g~~~p~f~l~---~~~G~~~~l~~~~gk-~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 4 LKAGDIAPKFSLP---DQDGEQVSLTDFQGQ-RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCCCCcCCCcEee---CCCCCEEeHHHhCCC-CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 7899999999998 788999999999998 899999987899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccC
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~ 193 (208)
+|.+++ +++|++++|+++.+++.||+...
T Consensus 80 ~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 80 RFAEKE-------LLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred HHHHHh-------CCCCeEEECCCchHHHHhCCCcc
Confidence 999988 78999999999999999999754
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.88 E-value=5.3e-22 Score=150.64 Aligned_cols=101 Identities=43% Similarity=0.662 Sum_probs=94.7
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHH
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~ 161 (208)
+++|+|+++ +.+|+.+++++++|| ++||+||+++|||.|..+++.|++++++++++|++||+|++|+++...+|.+
T Consensus 1 ~~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 1 DKAPDFTLP---DQDGETVSLSDLRGK-PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCCcccc---CCCCCEEeHHHhCCC-cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 478999998 888999999999997 8999999889999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCcceEEEcCccHHHHHhCCccC
Q 028461 162 TDRKSGGLGDLKYPLIADITKSISKSYGVLIP 193 (208)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~ 193 (208)
++ +++|++++|+++.+++.||+...
T Consensus 77 ~~-------~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 77 KY-------GLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred Hh-------CCCceEEECCccHHHHHhCCccc
Confidence 88 78899999999999999999764
No 22
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.88 E-value=3.9e-22 Score=152.50 Aligned_cols=100 Identities=27% Similarity=0.368 Sum_probs=90.2
Q ss_pred CCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHH
Q 028461 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (208)
Q Consensus 83 ~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 162 (208)
.+|+|+++ +.+|+.++++++.+++++||+||+++|||+|+.+++.|++++++++++|++||+|+.|+.+...+|.++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999998 788999999998754478888877999999999999999999999999999999999998888888887
Q ss_pred hhhcCCCCCCcceEEEcCccHHHHHhCCcc
Q 028461 163 DRKSGGLGDLKYPLIADITKSISKSYGVLI 192 (208)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~ 192 (208)
+ +++||+++|+++++.+.||+..
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~ 100 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVR 100 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCcee
Confidence 7 7899999999999999999963
No 23
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.88 E-value=9e-22 Score=150.78 Aligned_cols=104 Identities=25% Similarity=0.488 Sum_probs=91.9
Q ss_pred CCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHH
Q 028461 79 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (208)
Q Consensus 79 ~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~ 158 (208)
++|+++|+|++++. +.+|++++|++++|| ++||+||+..|||+|+.++|.+.+++++|+++|+++|+|+.++.....+
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk-~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGK-PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTS-EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCC-eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 58999999999622 489999999999998 8999999444999999999999999999999999999998887666888
Q ss_pred HHHHhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 159 WVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
|.+++ +.+|+++.|++++++++||+.
T Consensus 79 ~~~~~-------~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 79 FLKKY-------GINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp HHHHT-------TTTSEEEEETTSHHHHHTTCE
T ss_pred HHHhh-------CCCceEEechHHHHHHHhCCc
Confidence 88886 789999999999999999986
No 24
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.87 E-value=2.1e-21 Score=147.25 Aligned_cols=113 Identities=46% Similarity=0.747 Sum_probs=98.8
Q ss_pred CCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHH
Q 028461 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (208)
Q Consensus 83 ~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 162 (208)
++|+|++. +.+|+.+++++++|| ++||+||+++||+.|..+++.|++++++|+++|++||+|+.|+++..++|.++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 1 KAPDFTLP---ATDGGEVSLSDFKGK-WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred CCCCceec---cCCCcEEehHHhCCC-eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 47999998 788999999999987 89999999999999999999999999999888999999999999999999987
Q ss_pred hhhcCCCCCCcceEEEcCccHHHHHhCCccCCC---CcccceEEEE
Q 028461 163 DRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ---VKKSLLIFTW 205 (208)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~---g~~~r~~fvv 205 (208)
+. +.+|++++|+++.+++.||+...+. +...|.+|||
T Consensus 77 ~~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~li 116 (140)
T cd02971 77 EG------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFII 116 (140)
T ss_pred cc------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEE
Confidence 62 5789999999999999999986553 3345555554
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-20 Score=145.00 Aligned_cols=118 Identities=28% Similarity=0.471 Sum_probs=110.9
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+.+||.+|||+|+ |.+|+.++|.++.|++++|++|||.+-+|.|..+...+.+.|+++++.+.+|+++|-|+...++
T Consensus 63 v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqK 139 (211)
T KOG0855|consen 63 VNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQK 139 (211)
T ss_pred eecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHH
Confidence 8899999999998 9999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCC-CcccceEEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQ-VKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~-g~~~r~~fvv 205 (208)
+|..++ +++|.+|+|+.+++.+.||+..++. |...|..||.
T Consensus 140 aF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if 181 (211)
T KOG0855|consen 140 AFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIF 181 (211)
T ss_pred Hhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEE
Confidence 999988 8999999999999999999988664 4578888774
No 26
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.83 E-value=1.4e-19 Score=149.51 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=85.5
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC------
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD------ 151 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d------ 151 (208)
...|+.+|+|+++ |.+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|++||+|+.|
T Consensus 73 ~~~g~~aPdF~l~---d~~G~~vsLsd~kGK-~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 73 AATEKSVHDFTVK---DIDGKDVALSKFKGK-VLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred hhcCCCCCceEEE---CCCCCEEeHHHhCCC-eEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 3589999999998 888999999999997 8999999 9999999999999999999999999999999974
Q ss_pred --ChhhHHHHH-HHhhhcCCCCCCcceEEEc--Ccc-HHHHHhCC
Q 028461 152 --SVFSHLAWV-QTDRKSGGLGDLKYPLIAD--ITK-SISKSYGV 190 (208)
Q Consensus 152 --~~~~~~~~~-~~~~~~~~~~~~~f~~l~D--~~~-~v~~~~gV 190 (208)
+.+.+++|. +++ +++||++.| .++ ...+.|++
T Consensus 148 ~~s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~ 185 (236)
T PLN02399 148 PGSNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQF 185 (236)
T ss_pred CCCHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHH
Confidence 445677786 455 778999864 444 55566654
No 27
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.81 E-value=8e-20 Score=141.51 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC--------Chhh
Q 028461 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFS 155 (208)
Q Consensus 84 ~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d--------~~~~ 155 (208)
+|+|+++ +.+|+.++|++++|| ++||+|| ++||| |+.++|.|++++++|+++|++||+|+.| +.+.
T Consensus 2 ~~~f~l~---d~~G~~v~l~~~~Gk-~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~ 75 (152)
T cd00340 2 IYDFSVK---DIDGEPVSLSKYKGK-VLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEE 75 (152)
T ss_pred cceeEEE---CCCCCEEeHHHhCCC-EEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHH
Confidence 6899998 889999999999997 8999999 99999 9999999999999999999999999874 3577
Q ss_pred HHHHHHH-hhhcCCCCCCcceEEEcC--ccH-HHHHhCC
Q 028461 156 HLAWVQT-DRKSGGLGDLKYPLIADI--TKS-ISKSYGV 190 (208)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~f~~l~D~--~~~-v~~~~gV 190 (208)
+++|+++ . +++||++.|. ++. ..+.|++
T Consensus 76 ~~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~ 107 (152)
T cd00340 76 IKEFCETNY-------GVTFPMFAKIDVNGENAHPLYKY 107 (152)
T ss_pred HHHHHHHhc-------CCCceeeeeEeccCCCCChHHHH
Confidence 8999987 5 6889999874 333 4566664
No 28
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.80 E-value=3.6e-19 Score=143.96 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=82.5
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC-------
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------- 150 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~------- 150 (208)
-..|..+|+|+++ +.+|+.++|++++|| ++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.
T Consensus 13 ~~~~~~~pdf~l~---d~~G~~vsL~~~kGk-vvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 13 DELRKSIYDYTVK---TLEGTTVPMSSLKNK-VLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred hhcCCCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 4678899999998 888999999999997 8999999 999999999999999999999999999999986
Q ss_pred -CChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 151 -DSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 151 -d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
++.+.+++|++++ +++||+++|
T Consensus 88 ~d~~e~~~~f~~~~-------~~~fpvl~d 110 (199)
T PTZ00056 88 FPNTKDIRKFNDKN-------KIKYNFFEP 110 (199)
T ss_pred CCCHHHHHHHHHHc-------CCCceeeee
Confidence 4567899999887 789999986
No 29
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.79 E-value=1e-18 Score=137.58 Aligned_cols=102 Identities=19% Similarity=0.332 Sum_probs=90.5
Q ss_pred CCCCCCeEEeeecCCCCceEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-------
Q 028461 81 GNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (208)
Q Consensus 81 G~~~P~f~l~~~~~~~g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~------- 152 (208)
|+++|+|+++ +.+|+.++|+++ +|+ ++||+|| ++|||.|..+++.|.+++++|++++++||+|+.|+
T Consensus 1 g~~~p~f~l~---~~~g~~v~l~~~~~~k-~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d 75 (171)
T cd02969 1 GSPAPDFSLP---DTDGKTYSLADFADGK-ALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPED 75 (171)
T ss_pred CCcCCCcccc---CCCCCEEeHHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccc
Confidence 7899999998 788999999998 666 8999999 99999999999999999999998899999999875
Q ss_pred -hhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCC
Q 028461 153 -VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD 194 (208)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~ 194 (208)
.+..++|.++. +++|+++.|+++.+++.||+...+
T Consensus 76 ~~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~~~P 111 (171)
T cd02969 76 SPENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAACTP 111 (171)
T ss_pred CHHHHHHHHHHC-------CCCceEEECCchHHHHHcCCCcCC
Confidence 46667777766 678999999999999999996443
No 30
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.78 E-value=7.7e-19 Score=140.20 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=78.6
Q ss_pred CCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-------
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS------- 152 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~------- 152 (208)
.++.+|+|+++ +.+|+.++|++++||.++|+++| ++|||+|+.++|.|++++++|+++|++||+|++|+
T Consensus 16 ~~~~~p~f~l~---d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAI---DIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeE---cCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCC
Confidence 46789999998 78999999999999843455668 99999999999999999999999999999999752
Q ss_pred -hhhHHHHHH-HhhhcCCCCCCcceEEEc--CccHH-HHHh
Q 028461 153 -VFSHLAWVQ-TDRKSGGLGDLKYPLIAD--ITKSI-SKSY 188 (208)
Q Consensus 153 -~~~~~~~~~-~~~~~~~~~~~~f~~l~D--~~~~v-~~~~ 188 (208)
.+...+|.+ ++ +++||++.| .++.. .+.|
T Consensus 92 ~~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~ 125 (183)
T PTZ00256 92 DEPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIY 125 (183)
T ss_pred CHHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHH
Confidence 355666764 44 788999966 45443 3444
No 31
>PLN02412 probable glutathione peroxidase
Probab=99.78 E-value=9.8e-19 Score=137.68 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=83.0
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC--------h
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------V 153 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~--------~ 153 (208)
+.+|+|+++ +.+|+.++|++++|| ++||+|| ++|||.|..++|.|++++++|+++|++||+|+.|+ .
T Consensus 7 ~~~pdf~l~---d~~G~~v~l~~~~gk-~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~ 81 (167)
T PLN02412 7 KSIYDFTVK---DIGGNDVSLNQYKGK-VLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSN 81 (167)
T ss_pred CCCCceEEE---CCCCCEEeHHHhCCC-EEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCH
Confidence 678999998 889999999999997 8999999 99999999999999999999999999999999753 3
Q ss_pred hhH-HHHHHHhhhcCCCCCCcceEEEc--Ccc-HHHHHhCCcc
Q 028461 154 FSH-LAWVQTDRKSGGLGDLKYPLIAD--ITK-SISKSYGVLI 192 (208)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~f~~l~D--~~~-~v~~~~gV~~ 192 (208)
+.+ +.|.+++ +++||++.| .++ ...+.|+++.
T Consensus 82 ~~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~ 117 (167)
T PLN02412 82 EEIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLK 117 (167)
T ss_pred HHHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHH
Confidence 333 4445666 789999974 553 7777777653
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.78 E-value=3e-18 Score=130.23 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=87.8
Q ss_pred CCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCC-ChhhHHHHHHHHHHHhhCC---eEEEEEeCCC----hh
Q 028461 83 TAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFV-CPTEITAFSDRYTEFEKLN---TEILGVSTDS----VF 154 (208)
Q Consensus 83 ~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~-C~~~~~~l~~~~~~~~~~g---v~vi~Vs~d~----~~ 154 (208)
.+|+|++. +.+|+.+++++++|| ++||+|| ++||+. |..+++.|++++++++++| +++++|+.|+ ++
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk-~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~ 75 (142)
T cd02968 1 IGPDFTLT---DQDGRPVTLSDLKGK-PVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE 75 (142)
T ss_pred CCCceEEE---cCCCCEEchHHhCCC-EEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH
Confidence 37999998 889999999999987 8999999 899997 9999999999999998865 9999999864 46
Q ss_pred hHHHHHHHhhhcCCCCCCcceEEEcCc---cHHHHHhCCccCC
Q 028461 155 SHLAWVQTDRKSGGLGDLKYPLIADIT---KSISKSYGVLIPD 194 (208)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~f~~l~D~~---~~v~~~~gV~~~~ 194 (208)
.+++|.+++ +.+|+++.|++ +.+++.||+...+
T Consensus 76 ~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~ 111 (142)
T cd02968 76 VLKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEK 111 (142)
T ss_pred HHHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEe
Confidence 778888887 67899999975 7999999997653
No 33
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=135.13 Aligned_cols=124 Identities=31% Similarity=0.578 Sum_probs=109.8
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+..|+.+|+|+.. ..-..+++.|+.|..|+||+-.|++|+|+|.+|+.++.++..||.++|++.|+.|+|+.+.++
T Consensus 6 l~lgd~~PNfea~----Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 6 LRLGDTVPNFEAD----TTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred ccccCcCCCcccc----ccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 7799999999985 333469999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCC--CCcceEEEcCccHHHHHhCCccCCC------CcccceEEEE
Q 028461 158 AWVQTDRKSGGLG--DLKYPLIADITKSISKSYGVLIPDQ------VKKSLLIFTW 205 (208)
Q Consensus 158 ~~~~~~~~~~~~~--~~~f~~l~D~~~~v~~~~gV~~~~~------g~~~r~~fvv 205 (208)
.|.+.++...... +++||++.|++.+++-.||+++.++ |...|++||+
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi 137 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVI 137 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEE
Confidence 9999986654443 4899999999999999999976543 4568999986
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.78 E-value=9.9e-19 Score=135.45 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--------CChhhH
Q 028461 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--------DSVFSH 156 (208)
Q Consensus 85 P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--------d~~~~~ 156 (208)
=+|++. +.+|+.++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|++|++|+. |+.+.+
T Consensus 3 ~~f~l~---~~~G~~~~l~~~~Gk-~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~ 77 (153)
T TIGR02540 3 YSFEVK---DARGRTVSLEKYRGK-VSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEI 77 (153)
T ss_pred ccceeE---CCCCCEecHHHhCCC-EEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHH
Confidence 367887 889999999999998 7999999 999999999999999999999999999999985 556788
Q ss_pred HHHHHH-hhhcCCCCCCcceEEEc
Q 028461 157 LAWVQT-DRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~f~~l~D 179 (208)
++|+++ + +++||+++|
T Consensus 78 ~~f~~~~~-------~~~fp~~~d 94 (153)
T TIGR02540 78 ESFARRNY-------GVTFPMFSK 94 (153)
T ss_pred HHHHHHhc-------CCCCCccce
Confidence 999976 6 789999987
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.77 E-value=5.9e-18 Score=132.85 Aligned_cols=105 Identities=27% Similarity=0.454 Sum_probs=95.0
Q ss_pred CCCCCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-h
Q 028461 75 EIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V 153 (208)
Q Consensus 75 ~~~~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~-~ 153 (208)
...+.+|+.+|+|++. +.+|+.+++++++|| +++|+|| ++||+.|+.+++.++++++++++.++++++|+.|+ .
T Consensus 32 ~~~~~~g~~~p~~~~~---~~~g~~~~l~~~~~k-~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 32 KEKVQVGKEAPNFVLT---DLEGKKIELKDLKGK-GVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred ccccCCCCCCCCcEee---cCCCCEEeHHHcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 3448899999999998 788999999999887 8999999 99999999999999999999998899999999975 4
Q ss_pred hhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
+..+.|.++. +.+|+++.|.++++.+.||+.
T Consensus 107 ~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 107 LAVKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred HHHHHHHHHh-------CCCceEEECCcchHHHHcCCC
Confidence 6778888887 789999999999999999985
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.77 E-value=2.4e-18 Score=128.96 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=78.5
Q ss_pred CceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC------CChhhHHHHHHHhhhcCCCC
Q 028461 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST------DSVFSHLAWVQTDRKSGGLG 170 (208)
Q Consensus 97 g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~------d~~~~~~~~~~~~~~~~~~~ 170 (208)
|++++|++++|| ++||+|| ++|||+|..++|.|++++++|+++|++||+|+. ++.+..++|++++
T Consensus 13 ~~~v~l~~~~gk-~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------- 83 (126)
T cd03012 13 DKPLSLAQLRGK-VVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------- 83 (126)
T ss_pred CCccCHHHhCCC-EEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-------
Confidence 468999999997 8999999 999999999999999999999999999999976 3567888899887
Q ss_pred CCcceEEEcCccHHHHHhCCc
Q 028461 171 DLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 171 ~~~f~~l~D~~~~v~~~~gV~ 191 (208)
+++|+++.|+++.+.+.||+.
T Consensus 84 ~~~~p~~~D~~~~~~~~~~v~ 104 (126)
T cd03012 84 GITYPVANDNDYATWRAYGNQ 104 (126)
T ss_pred CCCCCEEECCchHHHHHhCCC
Confidence 789999999999999999984
No 37
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.6e-17 Score=124.54 Aligned_cols=113 Identities=25% Similarity=0.456 Sum_probs=93.9
Q ss_pred CCCCCCCCCeEEeeecCC---C-CceEecccc-cCCcEEEEEEEcCCCCCCChh-hHHHHHHHHHHHhhCCeE-EEEEeC
Q 028461 78 PLVGNTAPDFAAEAVFDQ---E-FINVKLSDY-IGKKYVILFFYPLDFTFVCPT-EITAFSDRYTEFEKLNTE-ILGVST 150 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~---~-g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~-~~~~l~~~~~~~~~~gv~-vi~Vs~ 150 (208)
+++|+++|+.++..-... . ...++-.|+ +|| .+||+-.|++|+|.|.. |+|.+.+++++|+++|+. |+.||+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gK-kVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGK-KVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCC-EEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 789999999998743111 1 234555665 565 79999999999999985 899999999999999996 888999
Q ss_pred CChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCCCC
Q 028461 151 DSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQV 196 (208)
Q Consensus 151 d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~~g 196 (208)
||++++.+|.+.. +.++ ++.++.|.+++|+|.+|++.+..+
T Consensus 82 ND~FVm~AWak~~----g~~~-~I~fi~Dg~geFTk~~Gm~~d~~~ 122 (165)
T COG0678 82 NDAFVMNAWAKSQ----GGEG-NIKFIPDGNGEFTKAMGMLVDKSD 122 (165)
T ss_pred CcHHHHHHHHHhc----CCCc-cEEEecCCCchhhhhcCceeeccc
Confidence 9999999999988 5433 799999999999999999876543
No 38
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.72 E-value=3.5e-17 Score=131.27 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecc--cccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhh
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLS--DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Ls--d~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~ 155 (208)
+.+|+++|+|+++ |.+|+.++++ +++|| ++||+|| ++|||+|+.++|.+++++++ .|+++++|+.|+++.
T Consensus 46 ~~vG~~aP~f~l~---d~~G~~v~l~~~~~~gk-~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 46 PDVGDAAPIFNLP---DFDGEPVRIGGSIAPGR-PTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCcCCCcEec---CCCCCEEeccchhcCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence 7899999999998 8889999995 56887 8999999 99999999999999998754 368899999998999
Q ss_pred HHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 156 HLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
+++|.+++ +++++.+. .++++.+.||+.
T Consensus 118 ~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~ 145 (189)
T TIGR02661 118 HRRFLKDH-------ELGGERYV-VSAEIGMAFQVG 145 (189)
T ss_pred HHHHHHhc-------CCCcceee-chhHHHHhccCC
Confidence 99999998 55665443 468999999984
No 39
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.5e-17 Score=122.25 Aligned_cols=121 Identities=26% Similarity=0.478 Sum_probs=106.4
Q ss_pred cccCCCCCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 72 ASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 72 ~~~~~~~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
+.+.. +++|+++|+|++. +.+.+.++|.++.|| ..||..+|.--+|+|..+...+++...++. |+.|+.||.|
T Consensus 13 l~g~~-~~vGd~ap~ftl~---~~dL~~v~l~~~~gk-~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~D 85 (158)
T COG2077 13 LKGNE-PQVGDKAPDFTLV---GKDLNDVSLADFAGK-KKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMD 85 (158)
T ss_pred ecCCC-CccCCcCCceEEE---cCcccceeccccCCc-eEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCC
Confidence 34455 8999999999997 788889999999998 567777788889999999999999988876 5899999999
Q ss_pred ChhhHHHHHHHhhhcCCCCCCcceEEEcCc-cHHHHHhCCccCCC---CcccceEEEE
Q 028461 152 SVFSHLAWVQTDRKSGGLGDLKYPLIADIT-KSISKSYGVLIPDQ---VKKSLLIFTW 205 (208)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~-~~v~~~~gV~~~~~---g~~~r~~fvv 205 (208)
-||.+++|...+ |+. +...++|.. ..|.+.|||.+.+. |++.|++||+
T Consensus 86 LPFAq~RfC~ae----Gi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~ 137 (158)
T COG2077 86 LPFAQKRFCGAE----GIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVL 137 (158)
T ss_pred ChhHHhhhhhhc----Ccc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEE
Confidence 999999999999 554 488999974 67999999999887 8999999986
No 40
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=2.4e-17 Score=131.75 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=83.9
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC-Chhh
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD-SVFS 155 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d-~~~~ 155 (208)
..+|+++|+|+++++ +.+|+.+++.++ +|| ++||+|| ++|||+|+.++|.|++++ ++|++||+|+.+ +.+.
T Consensus 39 ~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk-~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESL-ENPGQFYQADVLTQGK-PVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccC-CCCCccccHHHhcCCC-EEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHH
Confidence 568999999999843 222577777766 676 8999999 999999999999998764 458999999975 4577
Q ss_pred HHHHHHHhhhcCCCCCCcce-EEEcCccHHHHHhCCccCC
Q 028461 156 HLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIPD 194 (208)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~-~l~D~~~~v~~~~gV~~~~ 194 (208)
.++|.+++ +++|+ ++.|+++.+.+.|||...+
T Consensus 112 ~~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 112 AISWLKEL-------GNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred HHHHHHHc-------CCCCceEEEcCCccHHHhcCCCcCC
Confidence 88899988 67888 4889999999999986433
No 41
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.71 E-value=6.1e-17 Score=121.20 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=82.0
Q ss_pred CCCCCeEEeeecCCCC--ceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC-CChhhHHH
Q 028461 82 NTAPDFAAEAVFDQEF--INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST-DSVFSHLA 158 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g--~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~-d~~~~~~~ 158 (208)
+++|+|+++ +.+| +.+++++++|| ++||+|| ++|||+|..++|.++++.+++ +++||+|+. ++.+.+++
T Consensus 1 ~~~p~f~~~---~~~g~~~~~~~~~~~gk-~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~ 72 (127)
T cd03010 1 KPAPAFSLP---ALPGPDKTLTSADLKGK-PYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALA 72 (127)
T ss_pred CCCCCcccc---cccCCCccccHHHcCCC-EEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHH
Confidence 367999998 5555 78999999997 8999999 999999999999999987664 599999997 45678888
Q ss_pred HHHHhhhcCCCCCCcce-EEEcCccHHHHHhCCccC
Q 028461 159 WVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLIP 193 (208)
Q Consensus 159 ~~~~~~~~~~~~~~~f~-~l~D~~~~v~~~~gV~~~ 193 (208)
|.+++ +++|+ ++.|.++++++.||+...
T Consensus 73 ~~~~~-------~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 73 WLARH-------GNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred HHHhc-------CCCCceEEECCcchHHHhcCCCCC
Confidence 88887 66775 668999999999999643
No 42
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.71 E-value=1.8e-16 Score=116.20 Aligned_cols=92 Identities=16% Similarity=0.281 Sum_probs=79.3
Q ss_pred CCeEEeeecCCCCceEeccccc-CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 85 PDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 85 P~f~l~~~~~~~g~~v~Lsd~~-gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
|+|+++ +.+|+.++|++++ || ++||+|| ++||++|+.++|.++++++++++ ++.|++|+.++.+..++|.+++
T Consensus 1 p~f~l~---~~~G~~~~l~~~~~gk-~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~ 74 (114)
T cd02967 1 PTFDLT---TIDGAPVRIGGISPGR-PTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH 74 (114)
T ss_pred CCceee---cCCCCEEEcccccCCC-eEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh
Confidence 789987 7889999999997 87 8999999 99999999999999999888754 6888888877788889999988
Q ss_pred hhcCCCCCC-cceEEEcCccHHHHHhCCc
Q 028461 164 RKSGGLGDL-KYPLIADITKSISKSYGVL 191 (208)
Q Consensus 164 ~~~~~~~~~-~f~~l~D~~~~v~~~~gV~ 191 (208)
++ .||.+.| +++.+.||+.
T Consensus 75 -------~~~~~p~~~~--~~~~~~~~~~ 94 (114)
T cd02967 75 -------GLEAFPYVLS--AELGMAYQVS 94 (114)
T ss_pred -------CCCCCcEEec--HHHHhhcCCC
Confidence 55 4888774 5689999984
No 43
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.69 E-value=1.1e-16 Score=126.51 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=81.3
Q ss_pred CCCCCCCCCeEEeeecCCCCc--eEecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-h
Q 028461 78 PLVGNTAPDFAAEAVFDQEFI--NVKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-V 153 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~--~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~-~ 153 (208)
..+|+++|+|+++ +.+|+ .++++++ +|| ++||+|| ++|||+|+.++|.+++++ ++|++||+|+.++ .
T Consensus 34 ~~vG~~ap~f~l~---~~~G~~~~~~~~~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 34 ALIGKPVPAFPLA---ALREPLQAYTPEAFIQGK-PVLLNVW-ASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQS 104 (173)
T ss_pred hhcCCCCCCcccc---ccCCCCcccCHHHhcCCC-EEEEEEE-CCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCCh
Confidence 5689999999998 56665 5666676 565 9999999 999999999999987765 3589999999864 4
Q ss_pred hhHHHHHHHhhhcCCCCCCcce-EEEcCccHHHHHhCCcc
Q 028461 154 FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLI 192 (208)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~v~~~~gV~~ 192 (208)
+..++|.+++ +++|+ ++.|+++++++.||+..
T Consensus 105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred HHHHHHHHHc-------CCCCceEEECCCCchHHhcCCee
Confidence 5667888887 67887 56899999999999864
No 44
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.65 E-value=1.6e-15 Score=109.26 Aligned_cols=94 Identities=27% Similarity=0.471 Sum_probs=85.0
Q ss_pred CeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC--hhhHHHHHHHh
Q 028461 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQTD 163 (208)
Q Consensus 86 ~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~~ 163 (208)
+|++. +.+|+.+++.+++|| ++||+|| ++||+.|+..++.+.++.+++.+.++.+++|++|. .+..++|.+++
T Consensus 1 ~~~~~---~~~g~~~~~~~~~~k-~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 1 DFSLP---DLDGKPVSLSDLKGK-VVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred Ccccc---CCCCCEeehHHcCCC-EEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 35565 788899999999987 8999999 89999999999999999999987789999999988 78889999887
Q ss_pred hhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 164 RKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 164 ~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
+.+|+++.|.+.++.+.||+.
T Consensus 76 -------~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 76 -------GITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred -------CCCcceEEcCcchHHHhcCcC
Confidence 689999999999999999995
No 45
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.1e-16 Score=117.76 Aligned_cols=112 Identities=28% Similarity=0.398 Sum_probs=92.4
Q ss_pred CCCCCCCCCCeEEeeecCCC----CceEecccc-cCCcEEEEEEEcCCCCCCCh-hhHHHHHHHHHHHhhCCeE-EEEEe
Q 028461 77 PPLVGNTAPDFAAEAVFDQE----FINVKLSDY-IGKKYVILFFYPLDFTFVCP-TEITAFSDRYTEFEKLNTE-ILGVS 149 (208)
Q Consensus 77 ~~~vG~~~P~f~l~~~~~~~----g~~v~Lsd~-~gk~~vlL~f~~~t~Cp~C~-~~~~~l~~~~~~~~~~gv~-vi~Vs 149 (208)
.+.+||.+|+..+..+++.. +.+++++++ +|| .+||+-.|++|+|.|. .|+|.+.+..+|++.+|++ ||.||
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GK-KvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGK-KVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCc-eEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 38999999993333222322 338899886 565 7999999999999975 8899999999999999997 77889
Q ss_pred CCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCC
Q 028461 150 TDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD 194 (208)
Q Consensus 150 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~ 194 (208)
+||+|++++|.+.+ +. +-...++.|+++++.+.+|+.++.
T Consensus 87 VnDpFv~~aW~k~~----g~-~~~V~f~aD~~g~ftk~lgleld~ 126 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSL----GA-NDHVKFVADPAGEFTKSLGLELDL 126 (171)
T ss_pred cCcHHHHHHHHhhc----Cc-cceEEEEecCCCceeeeccceeee
Confidence 99999999999998 32 346899999999999999998763
No 46
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.64 E-value=7.3e-16 Score=118.63 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=68.9
Q ss_pred ceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC-------CeEEEEEeCCCh-hhHHHHHHHhhhcCCC
Q 028461 98 INVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-------NTEILGVSTDSV-FSHLAWVQTDRKSGGL 169 (208)
Q Consensus 98 ~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~-------gv~vi~Vs~d~~-~~~~~~~~~~~~~~~~ 169 (208)
..++|++++|| +++|+|| ++|||+|+.++|.|.+++++++++ +++||+||.|.. ...++|.++.
T Consensus 16 ~~~~ls~~kgk-~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------ 87 (146)
T cd03008 16 EREIVARLENR-VLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------ 87 (146)
T ss_pred ccccHHHhCCC-EEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC------
Confidence 35788999998 9999999 999999999999999999988754 699999999854 4467788876
Q ss_pred CCCcc---eEEEcCccHHHHHhCCc
Q 028461 170 GDLKY---PLIADITKSISKSYGVL 191 (208)
Q Consensus 170 ~~~~f---~~l~D~~~~v~~~~gV~ 191 (208)
+++| ++..+.++.+.+.||+.
T Consensus 88 -~~~~~~~p~~~~~~~~l~~~y~v~ 111 (146)
T cd03008 88 -PKKWLFLPFEDEFRRELEAQFSVE 111 (146)
T ss_pred -CCCceeecccchHHHHHHHHcCCC
Confidence 5455 33333456899999985
No 47
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.63 E-value=1.8e-15 Score=120.68 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=75.0
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC--------Ch
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SV 153 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d--------~~ 153 (208)
+.+++|+++ +.+|+.++|++++|| ++||+|| ++||+.|. +++.|++++++|+++|++|++|+.| +.
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GK-vvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~ 76 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGN-VLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSD 76 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCC-EEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCH
Confidence 357899998 888999999999998 8999999 99999885 7999999999999999999999884 56
Q ss_pred hhHHHHHH-HhhhcCCCCCCcceEEEcC
Q 028461 154 FSHLAWVQ-TDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~f~~l~D~ 180 (208)
+++++|++ ++ +++||++.|.
T Consensus 77 ~ei~~f~~~~~-------g~~Fpv~~k~ 97 (183)
T PRK10606 77 EEIKTYCRTTW-------GVTFPMFSKI 97 (183)
T ss_pred HHHHHHHHHcc-------CCCceeEEEE
Confidence 78889987 45 7889999443
No 48
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.63 E-value=2.7e-15 Score=111.29 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=80.1
Q ss_pred CCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC--hhhHHHHHHH
Q 028461 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--VFSHLAWVQT 162 (208)
Q Consensus 85 P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~ 162 (208)
|+|+++ +.+|+.+++++++|| ++||+|| ++||+.|+.+++.|++++++ +++++|+.|+ .+.+++|.++
T Consensus 1 p~f~l~---~~~g~~~~~~~~~~k-~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 1 PLFTAT---TLDGEQFDLESLSGK-PVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CCceee---cCCCCEeeHHHhCCC-EEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHH
Confidence 789998 788899999999996 8999999 99999999999999998865 5678887764 6788889988
Q ss_pred hhhcCCCCCCcceEEEcCccHHHHHhCCcc
Q 028461 163 DRKSGGLGDLKYPLIADITKSISKSYGVLI 192 (208)
Q Consensus 163 ~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~ 192 (208)
+ +++|+++.|.++++.+.|++..
T Consensus 71 ~-------~~~~~~~~d~~~~~~~~~~i~~ 93 (123)
T cd03011 71 K-------GYGFPVINDPDGVISARWGVSV 93 (123)
T ss_pred c-------CCCccEEECCCcHHHHhCCCCc
Confidence 7 7789999999999999999853
No 49
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.62 E-value=3.3e-15 Score=135.46 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=85.9
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-----
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----- 152 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~----- 152 (208)
+++++.+|+|++. |.+|+.+.++ +|| ++||+|| ++||++|+.++|.|++++++++.++++||+|+++.
T Consensus 32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGK-pVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~ 104 (521)
T PRK14018 32 ATVPHTLSTLKTA---DNRPASVYLK--KDK-PTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEK 104 (521)
T ss_pred ccccCCCCCeEee---cCCCceeecc--CCC-EEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccc
Confidence 6778899999998 8999999987 787 9999999 99999999999999999999988889999998732
Q ss_pred -hhhHHHHHHHhhhcCCCCCC-cceEEEcCccHHHHHhCCcc
Q 028461 153 -VFSHLAWVQTDRKSGGLGDL-KYPLIADITKSISKSYGVLI 192 (208)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~-~f~~l~D~~~~v~~~~gV~~ 192 (208)
....++|.+.+ ++ .|+++.|.++++++.|||..
T Consensus 105 ~~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~g 139 (521)
T PRK14018 105 KDGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNISV 139 (521)
T ss_pred cHHHHHHHHHhC-------CCcccceeccccHHHHHHcCCCC
Confidence 23445566554 33 68999999999999999953
No 50
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.61 E-value=3.1e-15 Score=146.33 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred chhhhhcccCCCCCCCCCCCCeEEeeecCCCCceEec-ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeE
Q 028461 66 KSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKL-SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTE 144 (208)
Q Consensus 66 ~~~~~~~~~~~~~~vG~~~P~f~l~~~~~~~g~~v~L-sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~ 144 (208)
..+.+.+.......+|+++|+|.... .+.+|+++++ ++++|| ++||+|| ++||++|+.++|.|++++++|+++|++
T Consensus 379 ~~~~~~i~~~~~~~~g~~~p~f~~~~-~~~~g~~~~l~~~lkGK-~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~ 455 (1057)
T PLN02919 379 QQFVSYISDLESKKTATKVPEFPPKL-DWLNTAPLQFRRDLKGK-VVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFT 455 (1057)
T ss_pred HHHHHHHHhhhccccCCcCCCCcccc-cccCCccccchhhcCCC-EEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeE
Confidence 34444454444467899999999762 1367889998 689997 9999999 999999999999999999999999999
Q ss_pred EEEEeC---CC---hhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCcc
Q 028461 145 ILGVST---DS---VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI 192 (208)
Q Consensus 145 vi~Vs~---d~---~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~ 192 (208)
||+|+. |. .+..++|++++ +++||++.|.++++++.|+|..
T Consensus 456 vvgV~~~~~D~~~~~~~~~~~~~~~-------~i~~pvv~D~~~~~~~~~~V~~ 502 (1057)
T PLN02919 456 VVGVHSAKFDNEKDLEAIRNAVLRY-------NISHPVVNDGDMYLWRELGVSS 502 (1057)
T ss_pred EEEEecccccccccHHHHHHHHHHh-------CCCccEEECCchHHHHhcCCCc
Confidence 999974 32 33445566655 7899999999999999999853
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.57 E-value=9.7e-15 Score=109.84 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC--CeEEEEEeCCChhhHHHHHHHhhhcCCCCC
Q 028461 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVFSHLAWVQTDRKSGGLGD 171 (208)
Q Consensus 94 ~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 171 (208)
+.+|+.++|++++|| ++||+|| ++||++|+.++|.+++++++++++ +++|++|++|... ..|.+...+.. ...
T Consensus 5 ~~~G~~v~l~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~~-~~~ 79 (131)
T cd03009 5 RNDGGKVPVSSLEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKMP-WLA 79 (131)
T ss_pred ccCCCCccHHHhCCc-EEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcCC-eeE
Confidence 789999999999998 8999999 899999999999999999999865 7999999998643 44444442211 012
Q ss_pred CcceEEEcCccHHHHHhCCc
Q 028461 172 LKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 172 ~~f~~l~D~~~~v~~~~gV~ 191 (208)
++|.. .|.+..+.+.|||.
T Consensus 80 ~~~~~-~~~~~~~~~~~~v~ 98 (131)
T cd03009 80 VPFSD-RERRSRLNRTFKIE 98 (131)
T ss_pred cccCC-HHHHHHHHHHcCCC
Confidence 22222 35557899999985
No 52
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.53 E-value=2.9e-14 Score=107.68 Aligned_cols=88 Identities=24% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC--CeEEEEEeCCCh-hhHHHHHHHhhhcCCCC
Q 028461 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSV-FSHLAWVQTDRKSGGLG 170 (208)
Q Consensus 94 ~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~--gv~vi~Vs~d~~-~~~~~~~~~~~~~~~~~ 170 (208)
|++ ++++|++++|| ++||+|| ++||++|+.++|.+++++++++++ +++|++|++|.. ...++|.+++
T Consensus 5 ~~~-~~v~l~~~~Gk-~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------- 74 (132)
T cd02964 5 DGE-GVVPVSALEGK-TVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------- 74 (132)
T ss_pred cCC-ccccHHHhCCC-EEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------
Confidence 444 69999999997 8999999 999999999999999999999875 799999999853 5667788776
Q ss_pred CCcceEE--Ec--CccHHHHHhCCcc
Q 028461 171 DLKYPLI--AD--ITKSISKSYGVLI 192 (208)
Q Consensus 171 ~~~f~~l--~D--~~~~v~~~~gV~~ 192 (208)
+ +|..+ .| ..+.+++.|||..
T Consensus 75 ~-~~~~~~~~d~~~~~~~~~~~~v~~ 99 (132)
T cd02964 75 P-PWLAVPFEDEELRELLEKQFKVEG 99 (132)
T ss_pred C-CeEeeccCcHHHHHHHHHHcCCCC
Confidence 3 34433 23 2357888899853
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=1e-13 Score=110.36 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=83.2
Q ss_pred CCCCCCCCCeEEeee-------cCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEE-----
Q 028461 78 PLVGNTAPDFAAEAV-------FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI----- 145 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~-------~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~v----- 145 (208)
+.+|+++|..++.+- .+-+.+.++.++++|| +.||+|| ++||++|+.++|.+.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GK-V~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGK-VRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCC-EEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 788999998876521 1223468899999998 8999999 99999999999999988 5568888
Q ss_pred -EEEeCCCh-hhHHHHHHHhhhcCCCCCCcce---EEEcCccHHHHHhCCccC
Q 028461 146 -LGVSTDSV-FSHLAWVQTDRKSGGLGDLKYP---LIADITKSISKSYGVLIP 193 (208)
Q Consensus 146 -i~Vs~d~~-~~~~~~~~~~~~~~~~~~~~f~---~l~D~~~~v~~~~gV~~~ 193 (208)
++|+.|+. .....|.+...+.. +..|| ++.|.++.+.+.||+...
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv~~~ 146 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQLNSE 146 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCCCCC
Confidence 99999863 44555665444433 45566 999999999999999644
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.45 E-value=4.3e-13 Score=106.41 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=68.1
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
+.+...-|+|++. +|+.+++++++ ||+|| ++|||+|+.++|.|++++++| |++|++|++|+..
T Consensus 49 ~~~~~~~~~f~l~-----dG~~v~lsd~~-----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~--- 111 (181)
T PRK13728 49 RTEKPAPRWFRLS-----NGRQVNLADWK-----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG--- 111 (181)
T ss_pred ccCCCCCCccCCC-----CCCEeehhHce-----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC---
Confidence 3455677888873 77899999986 77899 999999999999999999887 6999999987531
Q ss_pred HHHHHhhhcCCCCCCcceEEEc-CccHHHHHhCC
Q 028461 158 AWVQTDRKSGGLGDLKYPLIAD-ITKSISKSYGV 190 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D-~~~~v~~~~gV 190 (208)
+..||++.| .++.+.+.||+
T Consensus 112 -------------~~~fPv~~dd~~~~~~~~~g~ 132 (181)
T PRK13728 112 -------------DTAFPEALPAPPDVMQTFFPN 132 (181)
T ss_pred -------------CCCCceEecCchhHHHHHhCC
Confidence 357999985 56778888985
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.34 E-value=5.3e-12 Score=89.51 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=57.8
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHh-hCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC---cc
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI---TK 182 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~---~~ 182 (208)
|| +++|+|| ++||+.|..++|.|.+++++++ +.+++||+|+.|. ...+|.+..++. +.+|..+... ..
T Consensus 1 gK-~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GK-PVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE--DEEEWKKFLKKN----NFPWYNVPFDDDNNS 72 (95)
T ss_dssp TS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS--SHHHHHHHHHTC----TTSSEEEETTTHHHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC--CHHHHHHHHHhc----CCCceEEeeCcchHH
Confidence 56 8999999 9999999999999999999999 6789999999985 334444444322 3456665544 47
Q ss_pred HHHHHhCCcc
Q 028461 183 SISKSYGVLI 192 (208)
Q Consensus 183 ~v~~~~gV~~ 192 (208)
++.+.|+|..
T Consensus 73 ~l~~~~~i~~ 82 (95)
T PF13905_consen 73 ELLKKYGING 82 (95)
T ss_dssp HHHHHTT-TS
T ss_pred HHHHHCCCCc
Confidence 8999999854
No 56
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.24 E-value=3.3e-11 Score=95.44 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=79.0
Q ss_pred CCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCC-CChhhHHHHHHHHHHHhh--CCeEEEEEeCCC----
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEK--LNTEILGVSTDS---- 152 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp-~C~~~~~~l~~~~~~~~~--~gv~vi~Vs~d~---- 152 (208)
.....|+|++. |++|+.+++++++|| ++||+|. .+.|| .|...+..|.++.+++.+ ++++++.||+|+
T Consensus 28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk-~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLT---DQDGKTVTLDDLKGK-WVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT 102 (174)
T ss_dssp TSCSSST-EEE---ETTSSEEEGGGGTTS-EEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-
T ss_pred CCccCCCcEEE---cCCCCEecHHHhCCC-eEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC
Confidence 44567899998 899999999999998 8899988 77786 899999999999999875 479999999976
Q ss_pred hhhHHHHHHHhhhcCCCCCCcceEEE---cCccHHHHHhCCcc
Q 028461 153 VFSHLAWVQTDRKSGGLGDLKYPLIA---DITKSISKSYGVLI 192 (208)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~f~~l~---D~~~~v~~~~gV~~ 192 (208)
++++++|.+.. +.+|..+. +.-.++++.|++..
T Consensus 103 p~~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 103 PEVLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCE
T ss_pred HHHHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhh
Confidence 56777777776 33444443 33478899999863
No 57
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.17 E-value=1e-10 Score=96.22 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=87.1
Q ss_pred CCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCC-CChhhHHHHHHHHHHHhhC-CeE--EEEEeCCC----hhhH
Q 028461 85 PDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFEKL-NTE--ILGVSTDS----VFSH 156 (208)
Q Consensus 85 P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp-~C~~~~~~l~~~~~~~~~~-gv~--vi~Vs~d~----~~~~ 156 (208)
=+|+|. |.+|+.++-.||.|| |+||+|- .++|| .|+.|+..|.+..++.+++ |+. -|+|++|+ ++++
T Consensus 120 GpF~L~---d~~Gk~~te~df~Gk-w~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 120 GPFSLV---DHDGKRVTEKDFLGK-WSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVV 194 (280)
T ss_pred CceEEE---ecCCCeecccccccc-eEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHH
Confidence 368886 899999999999998 9999998 99998 8999999999999999754 443 46788865 5667
Q ss_pred HHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCC------CCcccceEEEEEeC
Q 028461 157 LAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD------QVKKSLLIFTWFLT 208 (208)
Q Consensus 157 ~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~------~g~~~r~~fvv~~~ 208 (208)
..+.++. ...-+.+.--.+.-..+++.|.||... +..+....+++||.
T Consensus 195 ~eY~~eF----~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLi 248 (280)
T KOG2792|consen 195 AEYVSEF----HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLI 248 (280)
T ss_pred HHHHHhc----ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEE
Confidence 7777765 111222333333347889999998654 34688888999973
No 58
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.14 E-value=7.3e-10 Score=90.18 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=80.8
Q ss_pred CeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCC-CChhhHHHHHHHHHHHh---hCCeEEEEEeCCChhhHHHHHH
Q 028461 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTF-VCPTEITAFSDRYTEFE---KLNTEILGVSTDSVFSHLAWVQ 161 (208)
Q Consensus 86 ~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp-~C~~~~~~l~~~~~~~~---~~gv~vi~Vs~d~~~~~~~~~~ 161 (208)
+|++. |++|+.+++.+++|| +.||+|. .++|| +|..++..|.++.+++. ..+++++.|++|+.....+.++
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk-~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk 123 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGK-PSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK 123 (207)
T ss_pred ceeee---cCCCCEeeccccCCC-EEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH
Confidence 89997 999999999999998 8888887 78898 99999999999999987 4568899999988766666666
Q ss_pred HhhhcCCCCCCcceEEEcC---ccHHHHHhCCcc
Q 028461 162 TDRKSGGLGDLKYPLIADI---TKSISKSYGVLI 192 (208)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~---~~~v~~~~gV~~ 192 (208)
++.+ .+ .+..|..+... ..+++++|+|+.
T Consensus 124 ~Y~~-~~-~~~~~~~ltg~~~~~~~~~k~~~V~~ 155 (207)
T COG1999 124 KYAE-LN-FDPRWIGLTGTPEQIEEVAKAYGVFY 155 (207)
T ss_pred HHhc-cc-CCCCeeeeeCCHHHHHHHHHHhccee
Confidence 6644 11 24557777653 378999999974
No 59
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.03 E-value=6.4e-10 Score=86.38 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=40.7
Q ss_pred CCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh
Q 028461 96 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (208)
Q Consensus 96 ~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~ 153 (208)
.|+.+.+++ +.||+|| ++|||+|+.++|.|+++++++ |++|++|++|+.
T Consensus 43 ~G~~~~l~~-----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDD-----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCC-----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 355666554 4599999 999999999999999999887 589999999863
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.94 E-value=1.5e-09 Score=78.60 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=52.0
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
.+.+|+ ++||.|| ++||++|+...|.|.++++++ .++.++.|+.|......++.+++ ++..+|--++.
T Consensus 11 ~~~~~k-~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~----~V~~~Pt~~~~ 78 (103)
T cd02985 11 KKAKGR-LVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRRE----KIIEVPHFLFY 78 (103)
T ss_pred HHcCCC-EEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHc----CCCcCCEEEEE
Confidence 344576 8999999 999999999999999999998 46889999988754445666665 55555543444
No 61
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=77.98 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=68.9
Q ss_pred CCCCceEecc-cccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC--CeEEEEEeCCC-hhhHHHHHHHhhhcCCC
Q 028461 94 DQEFINVKLS-DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDS-VFSHLAWVQTDRKSGGL 169 (208)
Q Consensus 94 ~~~g~~v~Ls-d~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~--gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~ 169 (208)
+.+|..+..+ +++|| .+.|+|- +.|||+|+.-.|.|++.|++.++. .++||.||.|. .+.+..+.+.+
T Consensus 19 ~~~~~~~~~~~~l~gK-vV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------ 90 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGK-VVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------ 90 (157)
T ss_pred ccCCccchHhHhhCCc-EEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc------
Confidence 6677777776 67886 6777775 999999999999999999999864 48999999986 45667777765
Q ss_pred CCCcceEE---EcCccHHHHHhCCc
Q 028461 170 GDLKYPLI---ADITKSISKSYGVL 191 (208)
Q Consensus 170 ~~~~f~~l---~D~~~~v~~~~gV~ 191 (208)
+..|..+ .|..+++.+.|+|.
T Consensus 91 -~~~W~~iPf~d~~~~~l~~ky~v~ 114 (157)
T KOG2501|consen 91 -HGDWLAIPFGDDLIQKLSEKYEVK 114 (157)
T ss_pred -CCCeEEecCCCHHHHHHHHhcccC
Confidence 4455554 33448888899985
No 62
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.81 E-value=4.7e-09 Score=80.46 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCceEecccc--cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCc
Q 028461 96 EFINVKLSDY--IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (208)
Q Consensus 96 ~g~~v~Lsd~--~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 173 (208)
+++...+.+. .|+ ++||+|| ++||++|+...|.+.++++++.+ ++.|+.|.+|... .....+++ ++..++
T Consensus 7 ~~~~~~~~~a~~~gk-~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~----~V~~iP 78 (142)
T cd02950 7 AASSTPPEVALSNGK-PTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRY----RVDGIP 78 (142)
T ss_pred hhccCCHHHHHhCCC-EEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHc----CCCCCC
Confidence 3344455443 455 8999999 99999999999999999999875 4789999988642 12233444 666778
Q ss_pred ceEEEcCccH
Q 028461 174 YPLIADITKS 183 (208)
Q Consensus 174 f~~l~D~~~~ 183 (208)
..++.|.+|+
T Consensus 79 t~v~~~~~G~ 88 (142)
T cd02950 79 HFVFLDREGN 88 (142)
T ss_pred EEEEECCCCC
Confidence 7788886654
No 63
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.78 E-value=6.9e-09 Score=87.76 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=45.8
Q ss_pred CceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh
Q 028461 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (208)
Q Consensus 97 g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~ 153 (208)
.+...++++.|+ ++|++|| ++||++|+.++|.|+++++++ |++|++|++|..
T Consensus 156 ~~~~~l~~l~~k-~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~ 207 (271)
T TIGR02740 156 QKDRVMKDLAKK-SGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHHHhcCC-eEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCC
Confidence 345788899997 8999999 899999999999999999887 589999999863
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.75 E-value=1.7e-08 Score=72.78 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=50.7
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++|| ++||.|| ++||++|+...|.+.+++++++ ++.++.|..++ ......+++ ++.+++-.++.+.+
T Consensus 14 ~~~~g~-~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~--~~~~l~~~~----~V~~~PT~~lf~~g 82 (100)
T cd02999 14 AFNRED-YTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS--IKPSLLSRY----GVVGFPTILLFNST 82 (100)
T ss_pred HhcCCC-EEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC--CCHHHHHhc----CCeecCEEEEEcCC
Confidence 467887 8999999 9999999999999999999986 57788776542 122333443 55566655666644
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.62 E-value=8.4e-08 Score=69.12 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~ 153 (208)
++ +++|+|| ++||++|+...|.+.++++++++.++.++.|..|..
T Consensus 17 ~~-~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~ 61 (102)
T cd02948 17 KG-LTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI 61 (102)
T ss_pred CC-eEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH
Confidence 54 8999999 999999999999999999999866678888888843
No 66
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.60 E-value=4.3e-07 Score=66.41 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=61.3
Q ss_pred CeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC--------hhhHH
Q 028461 86 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS--------VFSHL 157 (208)
Q Consensus 86 ~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~--------~~~~~ 157 (208)
+|++. |.+|++++|++|+|| ++||+=. ++.|+.-. +...|++++++|+++|++|+++-.|. .++.+
T Consensus 3 df~~~---~~~G~~v~l~~y~Gk-v~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~ 76 (108)
T PF00255_consen 3 DFSAK---DIDGKPVSLSKYKGK-VLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIK 76 (108)
T ss_dssp GSEEE---BTTSSEEEGGGGTTS-EEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHH
T ss_pred ceeee---CCCCCEECHHHcCCC-EEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHH
Confidence 56776 889999999999998 5555555 88898777 99999999999999999999996654 23445
Q ss_pred HHHHHhhhcCCCCCCcceEEE
Q 028461 158 AWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~ 178 (208)
.+.... .+.+|++..
T Consensus 77 ~~~~~~------~~~~F~vf~ 91 (108)
T PF00255_consen 77 EFCKEK------FGVTFPVFE 91 (108)
T ss_dssp HHHCHC------HT-SSEEBS
T ss_pred HHHHhc------cCCcccceE
Confidence 555442 156777664
No 67
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.3e-07 Score=71.07 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=65.8
Q ss_pred CCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC--------Chhh
Q 028461 84 APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD--------SVFS 155 (208)
Q Consensus 84 ~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d--------~~~~ 155 (208)
+=||+++ +.+|++++|++|+|| ++||+= -++.|..-. +...|+.+|++|+++|++|+++-.| +.++
T Consensus 5 ~yd~~~~---~~~G~~~~l~~~~Gk-VlLIVN-tASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eE 78 (162)
T COG0386 5 IYDFSVK---DIDGEPVSLSDYKGK-VLLIVN-TASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEE 78 (162)
T ss_pred cccceee---ccCCCCccHHHhCCc-EEEEEE-cccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHH
Confidence 4567777 889999999999998 444444 499897765 8899999999999999999999664 3466
Q ss_pred HHHHHHHhhhcCCCCCCcceEEE
Q 028461 156 HLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
..+|.+.. ++++||++.
T Consensus 79 I~~fC~~~------YgVtFp~f~ 95 (162)
T COG0386 79 IAKFCQLN------YGVTFPMFS 95 (162)
T ss_pred HHHHHHhc------cCceeeeee
Confidence 77777765 377888775
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.56 E-value=3.7e-07 Score=65.65 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=52.6
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHH---HHHHHHHhhCCeEEEEEeCCC-hhhHHHHHHHhhhcCCCCCCcceEEEcC-c
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDS-VFSHLAWVQTDRKSGGLGDLKYPLIADI-T 181 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l---~~~~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~ 181 (208)
|+ ++||.|| ++||++|+...+.+ .++.+++++ ++.++.|.++. ......+.+++ ++..+|-.++.+. +
T Consensus 11 ~k-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~----~i~~~Pti~~~~~~~ 83 (104)
T cd02953 11 GK-PVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRF----GVFGPPTYLFYGPGG 83 (104)
T ss_pred CC-eEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHc----CCCCCCEEEEECCCC
Confidence 54 8999999 99999999998877 567777765 78888888754 22346666666 6667787788886 5
Q ss_pred cH
Q 028461 182 KS 183 (208)
Q Consensus 182 ~~ 183 (208)
++
T Consensus 84 g~ 85 (104)
T cd02953 84 EP 85 (104)
T ss_pred CC
Confidence 44
No 69
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.55 E-value=2.1e-07 Score=76.51 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=83.5
Q ss_pred CCCCCCCCCeEEeeecCCCCce-Eecccc-cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh--
Q 028461 78 PLVGNTAPDFAAEAVFDQEFIN-VKLSDY-IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-- 153 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~-v~Lsd~-~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~-- 153 (208)
..+|.++||..+. ..+|+. .++.|| +|++++||+|.++| ||+-...+..++++.++|.+. ++++.|.+..+
T Consensus 73 a~~G~~APns~vv---~l~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 73 AKLGGPAPNSPVV---TLDGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred eeCCCCCCCCceE---eeCCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 6899999999997 556667 899998 67779999999878 999999999999999999873 45555543211
Q ss_pred ----------------hhHHH---HHHHhhhcCCCCCCcceEEEcC-ccHHHHHhCCccCCCCcccceE
Q 028461 154 ----------------FSHLA---WVQTDRKSGGLGDLKYPLIADI-TKSISKSYGVLIPDQVKKSLLI 202 (208)
Q Consensus 154 ----------------~~~~~---~~~~~~~~~~~~~~~f~~l~D~-~~~v~~~~gV~~~~~g~~~r~~ 202 (208)
..+++ -++...+ . ...+|++.|. ++.+.++||.+.+--.++..|-
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~-~---~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gk 212 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKE-E---FPQCPIVVDTMDNNFNKAYGALPERLYIIQDGK 212 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHh-h---CCCCCEEEEccCCHHHHHhCCCcceEEEEECCE
Confidence 01111 1112211 1 4678999998 5899999999866555555443
No 70
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.49 E-value=3e-07 Score=67.36 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=49.2
Q ss_pred ccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 105 YIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 105 ~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
..|+ ++||.|| ++||++|+...|.+.++.+++++.++.+..|+.|... ...++. ++..+|-.++.+
T Consensus 22 ~~~~-~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~----~V~~~Pt~~i~~ 87 (111)
T cd02963 22 SFKK-PYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKL----GAHSVPAIVGII 87 (111)
T ss_pred cCCC-eEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHc----CCccCCEEEEEE
Confidence 3565 8999999 9999999999999999999998767888888876522 223333 555566555554
No 71
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.44 E-value=5.6e-07 Score=65.52 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=50.3
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHH-hhhcCCCCCCcceEEEcCcc
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT-DRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~-~~~~~~~~~~~f~~l~D~~~ 182 (208)
.|+ +++|.|| ++||++|+...|.+.++.+++++.++.+..|..|.. ...+.++ . +..++|-.++.+.++
T Consensus 20 ~~k-~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~----~v~~~Pti~~f~~~~ 89 (109)
T cd02993 20 RNQ-STLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEEL----QLKSFPTILFFPKNS 89 (109)
T ss_pred cCC-CEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhc----CCCcCCEEEEEcCCC
Confidence 355 8999999 999999999999999999999877788988887751 2233332 2 444555555566554
No 72
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.44 E-value=7e-07 Score=63.08 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=49.9
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.|+ ++||+|| ++||++|+...|.+.++++++.+ ++.++.|..|.. ....+++ ++..+|-.++.+..
T Consensus 11 ~~~-~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---~~l~~~~----~i~~~Pt~~~~~~g 76 (96)
T cd02956 11 TQV-PVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ---PQIAQQF----GVQALPTVYLFAAG 76 (96)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC---HHHHHHc----CCCCCCEEEEEeCC
Confidence 455 8999999 99999999999999999999875 477888887763 2334444 55567767777743
No 73
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.1e-07 Score=67.01 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=42.1
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+.+|+.|+ ++||++|+...|.+.++..+|.+ +.++-|++|. .....++.
T Consensus 22 kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~ 70 (106)
T KOG0907|consen 22 KLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEF 70 (106)
T ss_pred CeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhc
Confidence 48899998 99999999999999999999986 8899999987 44555554
No 74
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.41 E-value=1e-06 Score=63.45 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCC--eEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
.++.++|.|| ++||++|+...|.+.++++++++.+ +.+..+..+. .....++. ++..+|--++.+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~----~I~~~Pt~~l~~ 80 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEF----GVRGYPTIKLLK 80 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhc----CCccccEEEEEc
Confidence 3348999999 9999999999999999999997644 5566666554 22333443 555666556664
No 75
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.41 E-value=8.2e-07 Score=66.02 Aligned_cols=67 Identities=10% Similarity=0.000 Sum_probs=46.3
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHH---HHHHHHhhCCeEEEEEeCCChh----------hHHHHHHHhhhcCCCCCCcce
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFS---DRYTEFEKLNTEILGVSTDSVF----------SHLAWVQTDRKSGGLGDLKYP 175 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~---~~~~~~~~~gv~vi~Vs~d~~~----------~~~~~~~~~~~~~~~~~~~f~ 175 (208)
++++|+|| ++||++|+...+.+. ++.+.+++ ++.++.|++|... ...++.+.+ ++..+|..
T Consensus 15 k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~----~v~~~Pt~ 88 (125)
T cd02951 15 KPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKY----RVRFTPTV 88 (125)
T ss_pred CcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHc----CCccccEE
Confidence 38999999 999999999988775 45555553 7888889887532 123344443 44456666
Q ss_pred EEEcCc
Q 028461 176 LIADIT 181 (208)
Q Consensus 176 ~l~D~~ 181 (208)
++.|.+
T Consensus 89 ~~~~~~ 94 (125)
T cd02951 89 IFLDPE 94 (125)
T ss_pred EEEcCC
Confidence 777765
No 76
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.39 E-value=4.7e-07 Score=70.21 Aligned_cols=73 Identities=8% Similarity=0.073 Sum_probs=52.9
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCC------CcceEEEcCcc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGD------LKYPLIADITK 182 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~------~~f~~l~D~~~ 182 (208)
+.+||.|| ++||++|+...|.+.++.+++.+.+++++.|++|... +..++. ++.. +|--++....+
T Consensus 48 ~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~----~V~~~~~v~~~PT~ilf~~Gk 119 (152)
T cd02962 48 VTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKF----RVSTSPLSKQLPTIILFQGGK 119 (152)
T ss_pred CEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHc----CceecCCcCCCCEEEEEECCE
Confidence 38999999 9999999999999999999998777999999987633 223333 2222 45445555455
Q ss_pred HHHHHhC
Q 028461 183 SISKSYG 189 (208)
Q Consensus 183 ~v~~~~g 189 (208)
++.+.-|
T Consensus 120 ~v~r~~G 126 (152)
T cd02962 120 EVARRPY 126 (152)
T ss_pred EEEEEec
Confidence 6666566
No 77
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.35 E-value=9.7e-07 Score=65.14 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=50.5
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCc-ceEEEcCccHHHHH
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK-YPLIADITKSISKS 187 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~-f~~l~D~~~~v~~~ 187 (208)
+++||.|| ++||++|+...|.|.++.+++.+. +.++-|.+|.. ....+++ ++..+| |.++.| ...+.+.
T Consensus 15 ~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~---~~la~~~----~V~~iPTf~~fk~-G~~v~~~ 84 (114)
T cd02954 15 KVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEV---PDFNKMY----ELYDPPTVMFFFR-NKHMKID 84 (114)
T ss_pred CEEEEEEE-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCC---HHHHHHc----CCCCCCEEEEEEC-CEEEEEE
Confidence 48999999 999999999999999999998753 67888888863 2344444 544455 444444 3444444
Q ss_pred hCC
Q 028461 188 YGV 190 (208)
Q Consensus 188 ~gV 190 (208)
.|.
T Consensus 85 ~G~ 87 (114)
T cd02954 85 LGT 87 (114)
T ss_pred cCC
Confidence 454
No 78
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.34 E-value=1.9e-06 Score=62.10 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
|+ ++||.|| ++||++|+...|.+.++.+++++ .+.++.|+.|.. ......+++ ++.++|--++.+.++
T Consensus 18 ~~-~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~-~~~~~~~~~----~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 18 NY-TTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED-KNKPLCGKY----GVQGFPTLKVFRPPK 85 (109)
T ss_pred CC-eEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc-ccHHHHHHc----CCCcCCEEEEEeCCC
Confidence 44 7999999 99999999999999999998874 578888888753 233455555 566677677777665
No 79
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.34 E-value=8.8e-07 Score=65.91 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=50.2
Q ss_pred cCCcEEEEEEEcC-------CCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh----hHHHHHHHhhhcCCCC-CCc
Q 028461 106 IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF----SHLAWVQTDRKSGGLG-DLK 173 (208)
Q Consensus 106 ~gk~~vlL~f~~~-------t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~----~~~~~~~~~~~~~~~~-~~~ 173 (208)
+|+ +++|.|| + +|||+|+...|.+.++.+++++ ++.++-|.+|... ....|.++. ++. .++
T Consensus 20 ~~~-~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~----~I~~~iP 92 (119)
T cd02952 20 EGK-PIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDP----KLTTGVP 92 (119)
T ss_pred CCC-eEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhcc----CcccCCC
Confidence 455 8999999 8 9999999999999999999874 5889999987632 234555544 444 556
Q ss_pred ceEEEcC
Q 028461 174 YPLIADI 180 (208)
Q Consensus 174 f~~l~D~ 180 (208)
.-++.+.
T Consensus 93 T~~~~~~ 99 (119)
T cd02952 93 TLLRWKT 99 (119)
T ss_pred EEEEEcC
Confidence 5555543
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.31 E-value=9.3e-07 Score=65.53 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=49.3
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCC--CCcceEEEcC
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLG--DLKYPLIADI 180 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~--~~~f~~l~D~ 180 (208)
+...+| +++|.|| ++||++|+...+.+.+..+... .+..++.|.+|...... .+.+ +.. .+|..++.|+
T Consensus 15 A~~~~k-pVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~--~~~~----~~~g~~vPt~~f~~~ 85 (117)
T cd02959 15 AKDSGK-PLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPK--DEEF----SPDGGYIPRILFLDP 85 (117)
T ss_pred HHHcCC-cEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCch--hhhc----ccCCCccceEEEECC
Confidence 344565 8999999 9999999999999988766543 34456667666432111 1122 221 2677888998
Q ss_pred ccHHHH
Q 028461 181 TKSISK 186 (208)
Q Consensus 181 ~~~v~~ 186 (208)
+|++.+
T Consensus 86 ~Gk~~~ 91 (117)
T cd02959 86 SGDVHP 91 (117)
T ss_pred CCCCch
Confidence 876655
No 81
>PRK09381 trxA thioredoxin; Provisional
Probab=98.30 E-value=7e-07 Score=64.69 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=47.1
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
++++|.|| ++|||+|+...|.+.++++++.+ ++.++.|..|.... ..+++ ++..+|-.++.+.
T Consensus 22 ~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~---~~~~~----~v~~~Pt~~~~~~ 84 (109)
T PRK09381 22 GAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG---TAPKY----GIRGIPTLLLFKN 84 (109)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh---HHHhC----CCCcCCEEEEEeC
Confidence 48999999 99999999999999999999976 58889998876332 23333 4445554455543
No 82
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.26 E-value=1.5e-05 Score=64.48 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=82.3
Q ss_pred CCCCCCCeEEeeecCCCCceEeccccc-CCcEEEEEEEc-----CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh
Q 028461 80 VGNTAPDFAAEAVFDQEFINVKLSDYI-GKKYVILFFYP-----LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV 153 (208)
Q Consensus 80 vG~~~P~f~l~~~~~~~g~~v~Lsd~~-gk~~vlL~f~~-----~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~ 153 (208)
.+..-.+..+. +.+|+ ++|.|+. |+.-+|++-+. ...||.|...+..+......+..+++.++.||-.+.
T Consensus 42 ~v~v~~~Y~F~---g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~ 117 (211)
T PF05988_consen 42 MVEVDKDYVFD---GPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPL 117 (211)
T ss_pred CccCCCCeEEe---CCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCH
Confidence 34555557764 55554 9999965 44333444332 467999999999997778888899999999999999
Q ss_pred hhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCccCC
Q 028461 154 FSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPD 194 (208)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~~~ 194 (208)
+...+|.+.. +..||.++..+..+...|++..++
T Consensus 118 ~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~ 151 (211)
T PF05988_consen 118 EKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDE 151 (211)
T ss_pred HHHHHHHHhc-------CCCceEEEcCCCcccccccceecc
Confidence 9999999998 889999999999999999996654
No 83
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.24 E-value=2.4e-06 Score=60.78 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=49.1
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHh-hCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
++++.|| ++||+.|+...+.+.++.++++ ..++.++.|..+.. .....+++ ++.++|.-++.+.++
T Consensus 20 ~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~----~i~~~P~~~~~~~~~ 86 (105)
T cd02998 20 DVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKY----GVSGFPTLKFFPKGS 86 (105)
T ss_pred cEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhC----CCCCcCEEEEEeCCC
Confidence 7999999 9999999999999999999987 34577777776652 33445554 555666666666554
No 84
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.21 E-value=5.8e-06 Score=59.02 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=45.8
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
+.++|.|| ++||++|+...|.+.++.+++++ ++.+..|+.|.. ....++. ++..+|--++.
T Consensus 19 ~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~---~~~~~~~----~v~~~Pt~~~~ 79 (101)
T cd03003 19 EIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD---RMLCRSQ----GVNSYPSLYVF 79 (101)
T ss_pred CeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc---HHHHHHc----CCCccCEEEEE
Confidence 48999999 99999999999999999999975 478888888752 2334444 44455544444
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.20 E-value=6.1e-06 Score=59.11 Aligned_cols=64 Identities=8% Similarity=0.069 Sum_probs=48.0
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++|.|| ++||++|+...|.+.++.+++++ ++.+..|+.+.. ....+++ ++.++|--++.+.+
T Consensus 20 ~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~---~~~~~~~----~i~~~Pt~~~~~~g 83 (104)
T cd03004 20 EPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY---ESLCQQA----NIRAYPTIRLYPGN 83 (104)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch---HHHHHHc----CCCcccEEEEEcCC
Confidence 38999999 99999999999999999999864 578888887752 3344444 55566655556554
No 86
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.20 E-value=2e-06 Score=61.12 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=36.5
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhh--CCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK--LNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~--~gv~vi~Vs~d~ 152 (208)
+++|.|| ++||++|+...|.+.++++++++ .++.++.|..+.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~ 61 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ 61 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 5999999 99999999999999999999976 467788887765
No 87
>PHA02278 thioredoxin-like protein
Probab=98.20 E-value=2.2e-06 Score=62.18 Aligned_cols=75 Identities=13% Similarity=-0.050 Sum_probs=48.7
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh-hHHHHHHHhhhcCCCCCCcceEEEcCccHHHHH
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF-SHLAWVQTDRKSGGLGDLKYPLIADITKSISKS 187 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~ 187 (208)
+++||+|| ++||++|+...|.+.++.+++.. .+.++-|.+|... ......+++ ++..+|--++......+.+.
T Consensus 15 ~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~----~I~~iPT~i~fk~G~~v~~~ 88 (103)
T PHA02278 15 KDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLF----DIMSTPVLIGYKDGQLVKKY 88 (103)
T ss_pred CcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHC----CCccccEEEEEECCEEEEEE
Confidence 48999999 99999999999999999877543 3678888887531 122334444 44455543444333444444
Q ss_pred hC
Q 028461 188 YG 189 (208)
Q Consensus 188 ~g 189 (208)
-|
T Consensus 89 ~G 90 (103)
T PHA02278 89 ED 90 (103)
T ss_pred eC
Confidence 44
No 88
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.18 E-value=5.5e-06 Score=61.07 Aligned_cols=44 Identities=5% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+++++||.|| ++||++|+...|.+.++.+++++ .+.++.|+.|.
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~ 71 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW 71 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC
Confidence 3458999999 99999999999999999999975 37788888775
No 89
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.18 E-value=3.7e-06 Score=59.82 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhh-CCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccH
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (208)
++ +++|.|| ++||+.|+...|.+.++.+++++ .++.++.|..+.. ....+.+++ ++..+|..++.. +++
T Consensus 17 ~~-~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~----~i~~~Pt~~~~~-~g~ 86 (104)
T cd02997 17 EK-HVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEY----NVKGFPTFKYFE-NGK 86 (104)
T ss_pred CC-CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhC----CCccccEEEEEe-CCC
Confidence 44 8999999 99999999999999999999875 3456666666542 133444444 444555444443 444
No 90
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.16 E-value=9.6e-06 Score=59.71 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=47.4
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCC-CCcceEEEcC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLG-DLKYPLIADI 180 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~-~~~f~~l~D~ 180 (208)
.+| .+||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|.. ..+.+.+ ++. ...|.++.+.
T Consensus 13 ~~k-lVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev---~dva~~y----~I~amPtfvffkng 78 (114)
T cd02986 13 AEK-VLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKV---PVYTQYF----DISYIPSTIFFFNG 78 (114)
T ss_pred CCC-EEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEecccc---HHHHHhc----CceeCcEEEEEECC
Confidence 344 9999999 999999999999999999999643 78888888863 3345554 332 2335555543
No 91
>PRK10996 thioredoxin 2; Provisional
Probab=98.15 E-value=4e-06 Score=63.88 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=48.2
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++|+|| ++||++|+...+.|.++++++.+ ++.++.|..+.. .+..+++ ++.++|-.++.+..
T Consensus 53 k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~---~~l~~~~----~V~~~Ptlii~~~G 116 (139)
T PRK10996 53 LPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE---RELSARF----RIRSIPTIMIFKNG 116 (139)
T ss_pred CeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC---HHHHHhc----CCCccCEEEEEECC
Confidence 48999999 99999999999999999988775 588888877652 3344444 56666766666533
No 92
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.6e-06 Score=65.32 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=51.9
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~ 188 (208)
.+||+.|| +.||.+|+...|.|.++..+|++ -+++.-|.+|. +.+..+++ ++.-++-.++.+.+...-+..
T Consensus 62 ~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~---~~ela~~Y----~I~avPtvlvfknGe~~d~~v 132 (150)
T KOG0910|consen 62 VPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE---HPELAEDY----EISAVPTVLVFKNGEKVDRFV 132 (150)
T ss_pred CCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc---ccchHhhc----ceeeeeEEEEEECCEEeeeec
Confidence 59999999 99999999999999999999965 47888888875 23334444 444455556666544443333
Q ss_pred CC
Q 028461 189 GV 190 (208)
Q Consensus 189 gV 190 (208)
|.
T Consensus 133 G~ 134 (150)
T KOG0910|consen 133 GA 134 (150)
T ss_pred cc
Confidence 43
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.10 E-value=4.5e-06 Score=58.84 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=45.4
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
++++|+|| ++||+.|+...+.|.++.+++ ..++.++.|..+. ...+.+++ ++.++|-.++.+.
T Consensus 15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~---~~~~~~~~----~i~~~Pt~~~~~~ 77 (97)
T cd02984 15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE---LPEISEKF----EITAVPTFVFFRN 77 (97)
T ss_pred CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc---CHHHHHhc----CCccccEEEEEEC
Confidence 48999999 999999999999999999887 3467777776543 33445555 5555565455543
No 94
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.09 E-value=1.3e-05 Score=57.11 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccH
Q 028461 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (208)
Q Consensus 111 vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (208)
.||.|| ++||++|+...|.+.++.++++..++.+..|..+... ...+++ ++..+|-.++. .+|+
T Consensus 19 ~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~----~i~~~Pt~~~~-~~g~ 82 (101)
T cd02994 19 WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRF----FVTALPTIYHA-KDGV 82 (101)
T ss_pred EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHc----CCcccCEEEEe-CCCC
Confidence 689999 9999999999999999998877667888888776522 234444 44445544443 4444
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.05 E-value=9.3e-06 Score=57.69 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=47.5
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++++|| ++||+.|+...+.+.++.+++.+ ++.++.|+.|... +..+++ ++.++|..++.+.+
T Consensus 14 ~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~---~l~~~~----~v~~vPt~~i~~~g 77 (97)
T cd02949 14 RLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQ---EIAEAA----GIMGTPTVQFFKDK 77 (97)
T ss_pred CeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCH---HHHHHC----CCeeccEEEEEECC
Confidence 48899999 99999999999999999988875 5778888876532 233343 45567766777643
No 96
>PTZ00051 thioredoxin; Provisional
Probab=98.02 E-value=7.5e-06 Score=57.88 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=43.4
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
+.++|+|| ++||++|+...+.+.++.+++. ++.++.|..+. .....+++ ++.++|--++..
T Consensus 19 ~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~---~~~~~~~~----~v~~~Pt~~~~~ 79 (98)
T PTZ00051 19 ELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE---LSEVAEKE----NITSMPTFKVFK 79 (98)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc---hHHHHHHC----CCceeeEEEEEe
Confidence 48999999 9999999999999999988765 57777777664 22334444 444555444443
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.02 E-value=2.7e-05 Score=54.99 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=49.6
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCC-eEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccH
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (208)
+++ +++|.|| .+||+.|+...+.+.++.++++..+ +.++.|..+. .....+++ ++..+|--++.+.++.
T Consensus 12 ~~~-~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~----~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 12 SNK-DVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRF----GVSGFPTIKFFPKGKK 81 (102)
T ss_pred cCC-cEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhC----CCCcCCEEEEecCCCc
Confidence 455 8999999 9999999999999999999987653 6666665543 23333444 5556666667776654
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.02 E-value=2.5e-05 Score=56.42 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=44.0
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC-----CeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-----NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~-----gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
++++|.|| ++||++|+...|.+.++++++++. ++.+..|..|.. ....+++ ++..+|-.++.
T Consensus 19 ~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---~~l~~~~----~v~~~Ptl~~~ 85 (108)
T cd02996 19 ELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---SDIADRY----RINKYPTLKLF 85 (108)
T ss_pred CEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHhC----CCCcCCEEEEE
Confidence 48999999 999999999999999999887532 366767777652 2334444 55555544444
No 99
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.3e-05 Score=62.33 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=55.4
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
..+=+|+.+ |.+|+.|+|+.|+|| ++||+=. ++.|..=..+-..|+.++++|+++|++|++.-.|
T Consensus 12 ~siydf~~~---d~~G~~v~l~~yrGk-V~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 12 GSIYDFSAK---DLDGEYVSLSQYRGK-VVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred cceeeeEEe---cCCCCCccHHHhCCe-EEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 445678887 899999999999998 5555555 9999998888889999999999999999999654
No 100
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.00 E-value=2.4e-05 Score=54.58 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=49.2
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHh-hCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
+++|.|| ..||+.|+...+.+.++.+.++ +.++.++.|+.+. .....+++ ++...|-.++.+.++
T Consensus 17 ~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~----~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 17 DVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEY----GVRGYPTIKLFPNGS 82 (101)
T ss_pred cEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhC----CCCCCCEEEEEcCCC
Confidence 8999999 8999999999999999999885 4567888787665 34445554 555666566677663
No 101
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.00 E-value=1.5e-05 Score=61.03 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=41.5
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+.+++||.|| ++||++|+...|.|.++.+++.+. +.|+-|.+|.. ....+.+
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~---~dla~~y 73 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEV---PDFNTMY 73 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCC---HHHHHHc
Confidence 3358999999 999999999999999999998753 67788898863 3444444
No 102
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.99 E-value=1.7e-05 Score=55.73 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=50.1
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~ 188 (208)
+.++|+|| .+||+.|+...+.+.++.+++.+ ++.++.|..+.. ..+.+++ +...+|-.++.+..+.+.+..
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~---~~~~~~~----~v~~~P~~~~~~~g~~~~~~~ 85 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN---PDIAAKY----GIRSIPTLLLFKNGKEVDRSV 85 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC---HHHHHHc----CCCcCCEEEEEeCCcEeeeec
Confidence 37999999 99999999999999999988864 588888887653 2334444 555566555665443333333
Q ss_pred C
Q 028461 189 G 189 (208)
Q Consensus 189 g 189 (208)
|
T Consensus 86 g 86 (101)
T TIGR01068 86 G 86 (101)
T ss_pred C
Confidence 3
No 103
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.99 E-value=3.1e-05 Score=54.65 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=50.5
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccH
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKS 183 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 183 (208)
+.+||.|| ..||+.|+...|.+.++.+++.+ ++.++-|..+. .+...+++ ++.++|--++...+..
T Consensus 18 ~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~---~~~l~~~~----~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 18 KPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE---NKELCKKY----GVKSVPTIIFFKNGKE 83 (103)
T ss_dssp SEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT---SHHHHHHT----TCSSSSEEEEEETTEE
T ss_pred CCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc---cchhhhcc----CCCCCCEEEEEECCcE
Confidence 48999999 89999999999999999999987 88888888874 24455555 5556665555554433
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.97 E-value=3.5e-05 Score=56.67 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=45.6
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC-C-eEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-N-TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~-g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++|.|| ++||++|+...+.+.++.+++++. + +.+..|..+.. ......+++ ++..+|--++...+
T Consensus 20 ~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~----~i~~~Pt~~lf~~~ 88 (114)
T cd02992 20 SAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDF----GVTGYPTLRYFPPF 88 (114)
T ss_pred CeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhC----CCCCCCEEEEECCC
Confidence 48999999 999999999999999999998642 2 55655654331 233444444 55455544555443
No 105
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.97 E-value=4e-05 Score=54.37 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=47.7
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
++++|.|| ++||+.|+...|.+.++.++++. .+.++.+..+.. ....+++ ++.++|-.++.+.+
T Consensus 19 ~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~---~~~~~~~----~i~~~P~~~~~~~~ 82 (103)
T cd03001 19 DVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH---QSLAQQY----GVRGFPTIKVFGAG 82 (103)
T ss_pred CcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch---HHHHHHC----CCCccCEEEEECCC
Confidence 36899999 99999999999999999998875 477888877652 2334444 55566666666654
No 106
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.95 E-value=1.5e-05 Score=59.50 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=34.2
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+.++++|+ ++|||+|+...|.|.++.++ .++.|+.|++|.
T Consensus 24 ~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~ 63 (122)
T TIGR01295 24 ETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSEN 63 (122)
T ss_pred CcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCC
Confidence 46899998 99999999999999999887 346788898873
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.92 E-value=2.1e-05 Score=57.55 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=44.2
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
+++||.|| ++||++|+...|.+.++.+++. ++.++-|..+.. ...+++ ++..+|--++..
T Consensus 25 ~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~----~i~~~Pt~~~f~ 84 (113)
T cd02957 25 TRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYL----DIKVLPTLLVYK 84 (113)
T ss_pred CEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhc----CCCcCCEEEEEE
Confidence 48999999 9999999999999999999886 577777776643 445554 444555444443
No 108
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.91 E-value=3.6e-05 Score=69.59 Aligned_cols=45 Identities=7% Similarity=0.172 Sum_probs=40.3
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.++ ++||.|| ++||++|+...|.|.++.++|+++++.|+.|.+|.
T Consensus 370 ~~k-~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 370 RKE-AWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred CCC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 444 8999999 99999999999999999999988788899898875
No 109
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.90 E-value=1.5e-05 Score=56.52 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhh-CCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~-~gv~vi~Vs~d~ 152 (208)
+.++|+|| ++||++|+...|.+.++.+++++ .++.+..|..+.
T Consensus 19 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 19 KDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 37899999 99999999999999999999876 457777777654
No 110
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.88 E-value=1.6e-05 Score=57.51 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHH---HHhhCCeEEEEEeCCChh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYT---EFEKLNTEILGVSTDSVF 154 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~---~~~~~gv~vi~Vs~d~~~ 154 (208)
|| ++|++|| ..|||.|+...+.+.+..+ ++ +.++.++.+.+++..
T Consensus 5 ~k-~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 5 GK-PIVVVFT-DPWCPYCKKLEKELFPDNDVARYL-KDDFQVIFVNIDDSR 52 (112)
T ss_dssp SS-EEEEEEE--TT-HHHHHHHHHHHHHHHHHCEE-HCECEEEECESHSHH
T ss_pred CC-EEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHh-hcCeEEEEEecCCcc
Confidence 54 8999999 9999999988777775433 33 336888888887654
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.88 E-value=3.9e-05 Score=56.34 Aligned_cols=66 Identities=6% Similarity=-0.066 Sum_probs=46.6
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..+..++++|| ++||++|+...+.+.++.+++ ..++++-|..|.. .+..+.+ ++..+|--++.+.+
T Consensus 20 ~~~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~---~~l~~~~----~v~~vPt~~i~~~g 85 (113)
T cd02975 20 KNPVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED---KEKAEKY----GVERVPTTIFLQDG 85 (113)
T ss_pred CCCeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC---HHHHHHc----CCCcCCEEEEEeCC
Confidence 34445777777 999999999999999998876 3578888888752 2333444 55566766776643
No 112
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.78 E-value=0.00012 Score=45.64 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=44.3
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
|+.|| ..||+.|....+.+.++ ++.+.+++++.++++.......+.... +....+.-++.|.
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRY----GVGGVPTLVVFGP 62 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhC----CCccccEEEEEeC
Confidence 46788 89999999999999988 556678999999998866555553333 3334455455554
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.77 E-value=0.00013 Score=49.59 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=46.0
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
++++|+|| ..||+.|....+.+.++.++ ..++.++.|+.+. .....++. ++.+.|..++.+.++
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~---~~~~~~~~----~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE---NPELAEEY----GVRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC---ChhHHHhc----CcccccEEEEEECCE
Confidence 37899999 89999999999999998877 4578899888876 22233333 444555555655443
No 114
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.77 E-value=0.00012 Score=54.81 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=49.1
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHH-HH--HHHHHHhhCCeEEEEEeCCC-hhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDS-VFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~-l~--~~~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.+| +++|+|+ ++||+.|+..-+. +. ++.+.+. +++.+|-|.++. ++..+.+.+......+..++|..++.|++
T Consensus 14 ~~K-pVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 14 EDK-PIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred cCC-eEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 455 8999998 9999999966442 22 2333333 366666666643 33333344433333355688999999998
Q ss_pred cHHHHHh
Q 028461 182 KSISKSY 188 (208)
Q Consensus 182 ~~v~~~~ 188 (208)
|+.-...
T Consensus 91 G~~~~~~ 97 (124)
T cd02955 91 LKPFFGG 97 (124)
T ss_pred CCEEeee
Confidence 7654443
No 115
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.76 E-value=8.2e-05 Score=69.25 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHH---HHHHHHHhhCCeEEEEEeCCCh-hhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSV-FSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l---~~~~~~~~~~gv~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
++.+|| +++|+|| ++||+.|+...+.. .++.++++ ++.++-|.+++. ...+++.+++ ++.++|..++.
T Consensus 470 a~~~gK-~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~----~v~g~Pt~~~~ 541 (571)
T PRK00293 470 AKGKGK-PVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHY----NVLGLPTILFF 541 (571)
T ss_pred HHhcCC-cEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHc----CCCCCCEEEEE
Confidence 334566 8999999 99999999766553 45556664 577888887653 3456677776 66678888999
Q ss_pred cCccHH
Q 028461 179 DITKSI 184 (208)
Q Consensus 179 D~~~~v 184 (208)
|.+++.
T Consensus 542 ~~~G~~ 547 (571)
T PRK00293 542 DAQGQE 547 (571)
T ss_pred CCCCCC
Confidence 987765
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.74 E-value=0.00013 Score=53.50 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~ 188 (208)
+++|+.|| ++||++|+...|.+.++.+++. ++.++-|.+|... ...+++ ++..+|--++......+.+..
T Consensus 23 ~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~---~l~~~~----~v~~vPt~l~fk~G~~v~~~~ 92 (113)
T cd02989 23 ERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAP---FLVEKL----NIKVLPTVILFKNGKTVDRIV 92 (113)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCH---HHHHHC----CCccCCEEEEEECCEEEEEEE
Confidence 47999999 9999999999999999998875 4788888776532 233333 444556555555444444444
Q ss_pred CC
Q 028461 189 GV 190 (208)
Q Consensus 189 gV 190 (208)
|.
T Consensus 93 g~ 94 (113)
T cd02989 93 GF 94 (113)
T ss_pred Cc
Confidence 44
No 117
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.69 E-value=0.00012 Score=53.64 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=49.2
Q ss_pred HHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCcc
Q 028461 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLI 192 (208)
Q Consensus 131 l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~~ 192 (208)
|.+.++++++.|+++|+|...+.+..++|.+.. +.+++++.|++.++.+++|+..
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~ 56 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKR 56 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCcc
Confidence 567788899999999999999997799999876 7899999999999999999853
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.68 E-value=0.00015 Score=59.41 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=40.6
Q ss_pred EecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 100 v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
-.+.++.++ +.|++|+.++ |+.|..+.|.|+.+.++| |++|+.||+|.
T Consensus 113 ~~l~~la~~-~gL~~F~~~~-C~~C~~~~pil~~~~~~y---g~~v~~vs~DG 160 (215)
T PF13728_consen 113 KALKQLAQK-YGLFFFYRSD-CPYCQQQAPILQQFADKY---GFSVIPVSLDG 160 (215)
T ss_pred HHHHHHhhC-eEEEEEEcCC-CchhHHHHHHHHHHHHHh---CCEEEEEecCC
Confidence 345566665 8999999665 999999999999999877 79999999986
No 119
>PLN02309 5'-adenylylsulfate reductase
Probab=97.65 E-value=0.00017 Score=65.28 Aligned_cols=43 Identities=7% Similarity=0.207 Sum_probs=39.3
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
++ ++||+|| ++||++|+...|.+.++.++|+..++.|+.|+.|
T Consensus 365 ~k-~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 365 KE-PWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CC-eEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 44 8999999 9999999999999999999998778999999888
No 120
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.62 E-value=0.0002 Score=59.03 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=44.4
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
+++|.|| ++||++|+...|.+.++.+++++ .+.+..|..+. .....+++ ++.++|-.++.+
T Consensus 54 ~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~---~~~l~~~~----~I~~~PTl~~f~ 114 (224)
T PTZ00443 54 PWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR---ALNLAKRF----AIKGYPTLLLFD 114 (224)
T ss_pred CEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc---cHHHHHHc----CCCcCCEEEEEE
Confidence 7899999 99999999999999999999875 36666665543 23344444 555666555555
No 121
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.60 E-value=0.0002 Score=50.15 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=39.9
Q ss_pred ecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 101 ~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
.+..+.++ .+++.|| +.|||.|....|.+.++.+++.. ++.++.|...
T Consensus 26 ~~~~~~~~-~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGK-PVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCc-eEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 33444465 8899999 99999999999999999999876 6788889885
No 122
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.53 E-value=0.00023 Score=52.26 Aligned_cols=63 Identities=13% Similarity=-0.042 Sum_probs=45.1
Q ss_pred cCCcEEEEEEEcCCC--CCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 106 IGKKYVILFFYPLDF--TFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~--Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
.|. ++||.|| +.| ||.|....|.|.++.++|.++ +.++-|.+|+.. +-.+++ ++..+|--++.
T Consensus 26 ~~~-~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~---~la~~f----~V~sIPTli~f 90 (111)
T cd02965 26 AGG-DLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ---ALAARF----GVLRTPALLFF 90 (111)
T ss_pred CCC-CEEEEec-CCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH---HHHHHc----CCCcCCEEEEE
Confidence 344 7899999 886 999999999999999998753 677777777632 444444 55455533333
No 123
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.00042 Score=56.22 Aligned_cols=91 Identities=12% Similarity=0.254 Sum_probs=73.7
Q ss_pred ceEecccccCCcEEEEE--E-----EcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCC
Q 028461 98 INVKLSDYIGKKYVILF--F-----YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLG 170 (208)
Q Consensus 98 ~~v~Lsd~~gk~~vlL~--f-----~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 170 (208)
.+.+|.|+.+.+-.||+ | | ...||.|.....++.-...-++..++.+++||--+.+...++.+..
T Consensus 62 G~~sLadLF~grsqLIvYhfmF~P~~-~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------- 133 (247)
T COG4312 62 GKKSLADLFGGRSQLIVYHFMFGPGW-DHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------- 133 (247)
T ss_pred cchhHHHHhCCCceEEEEEEecCCCc-cCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc-------
Confidence 37899997654333333 2 3 3469999998888877777788889999999999999999999988
Q ss_pred CCcceEEEcCccHHHHHhCCccCCCC
Q 028461 171 DLKYPLIADITKSISKSYGVLIPDQV 196 (208)
Q Consensus 171 ~~~f~~l~D~~~~v~~~~gV~~~~~g 196 (208)
+..|+.+++.++.|.+.|+|.+.++.
T Consensus 134 GW~f~w~Ss~~s~Fn~Df~vsf~~~q 159 (247)
T COG4312 134 GWQFPWVSSTDSDFNRDFQVSFTEDQ 159 (247)
T ss_pred CCcceeEeccCcccccccccccchhh
Confidence 88899999999999999999766543
No 124
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.50 E-value=0.0003 Score=59.02 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=40.5
Q ss_pred EecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 100 v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
-.+.++.++ +.|++|+.++ ||.|....|.++.+.++| |++|+.||+|.
T Consensus 143 ~~i~~la~~-~gL~fFy~~~-C~~C~~~apil~~fa~~y---gi~v~~VS~DG 190 (256)
T TIGR02739 143 KAIQQLSQS-YGLFFFYRGK-SPISQKMAPVIQAFAKEY---GISVIPISVDG 190 (256)
T ss_pred HHHHHHHhc-eeEEEEECCC-CchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 345556665 9999999666 999999999999998776 79999999986
No 125
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.41 E-value=0.00051 Score=46.60 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 111 vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.|..|| +.||++|+...+.+.++.++++. .+.++-|..+.
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~ 41 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME 41 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc
Confidence 466777 89999999999999999988864 47788887764
No 126
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.41 E-value=0.0005 Score=48.79 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=40.0
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
|+ ++++.|+ ..||+.|....+.+.++.++|+++ +.++.|..|. .....+..
T Consensus 12 ~~-~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~---~~~~~~~~ 62 (103)
T cd02982 12 GK-PLLVLFY-NKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD---FGRHLEYF 62 (103)
T ss_pred CC-CEEEEEE-cCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh---hHHHHHHc
Confidence 55 7899998 899999999999999999999853 7777776654 33455555
No 127
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.40 E-value=0.00029 Score=55.88 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=35.8
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
++||.|| ++||++|+...|.|.++.++|. ++.++-|.++.
T Consensus 85 ~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~ 124 (175)
T cd02987 85 TVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA 124 (175)
T ss_pred EEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc
Confidence 8999999 9999999999999999999886 58888888875
No 128
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00044 Score=58.68 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=36.3
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+||+.|| +.||++|..-+|.|.++..+|+. .+.+.-|++|.
T Consensus 44 ~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~ 85 (304)
T COG3118 44 VPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDA 85 (304)
T ss_pred CCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCc
Confidence 49999999 99999999999999999999985 35666677765
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=97.35 E-value=0.0002 Score=64.64 Aligned_cols=69 Identities=9% Similarity=0.089 Sum_probs=46.4
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC-CeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHH
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL-NTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSI 184 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v 184 (208)
|+ .++|.|| ++||+.|+...|.+.++.+++++. .+.+..|..+..... .+.. ++.++|-.++.+.++.+
T Consensus 375 ~k-~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~---~~~~----~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 375 DK-DVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP---LEEF----SWSAFPTILFVKAGERT 444 (477)
T ss_pred CC-CEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc---hhcC----CCcccCeEEEEECCCcc
Confidence 54 8999999 999999999999999999988764 355666666542221 1111 33355555666655543
No 130
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.27 E-value=0.0013 Score=45.19 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=40.2
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHH---HHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l---~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
.|| +++|+|+ ++||+.|+..-..+ .++.+.+. +++..+-|..++.....+... . ++|..++.|+
T Consensus 16 ~~k-pvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~~~~~-~-------~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGK-PVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNAQFDR-Q-------GYPTFFFLDP 82 (82)
T ss_dssp HTS-EEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHHHHHH-C-------SSSEEEEEET
T ss_pred cCC-CEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhHHhCC-c-------cCCEEEEeCC
Confidence 465 8999998 99999998765554 22222233 577888887776554332222 1 4666666654
No 131
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00085 Score=53.25 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCc
Q 028461 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLK 173 (208)
Q Consensus 94 ~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 173 (208)
+..|+.+.+.++..++..++.|.+---|-.|+.+...|.++.+-+++.|+..|+|-.........+.++- .+.
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ 108 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS 108 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence 6778899999998777789999989999999999999999988888999999998654433333333332 233
Q ss_pred ceEEEcCccHHHHHhC
Q 028461 174 YPLIADITKSISKSYG 189 (208)
Q Consensus 174 f~~l~D~~~~v~~~~g 189 (208)
-.++.|++..+.+.++
T Consensus 109 gevylD~~~~~Y~~le 124 (197)
T KOG4498|consen 109 GEVYLDPHRGFYKPLE 124 (197)
T ss_pred eeEEEcCccceechhh
Confidence 3566676655554444
No 132
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.24 E-value=0.00073 Score=60.41 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=36.5
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCC--eEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g--v~vi~Vs~d~ 152 (208)
++++|.|| ++||+.|+...|.+.++.+++++.+ +.++.|..+.
T Consensus 19 ~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 63 (462)
T TIGR01130 19 EFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE 63 (462)
T ss_pred CCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC
Confidence 37899999 9999999999999999999988766 6777776654
No 133
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.24 E-value=0.00036 Score=58.28 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=40.2
Q ss_pred ecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 101 ~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+.++.++ +.|++||.++ ||.|....|.++.+.++| |+.|+.||+|.
T Consensus 137 ~i~~la~~-~GL~fFy~s~-Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG 183 (248)
T PRK13703 137 AIAKLAEH-YGLMFFYRGQ-DPIDGQLAQVINDFRDTY---GLSVIPVSVDG 183 (248)
T ss_pred HHHHHHhc-ceEEEEECCC-CchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 35566665 9999999666 999999999999998776 79999999986
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=97.18 E-value=0.00065 Score=55.18 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=33.8
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
+.+|++|| ++|||.|+...+.+.++.++|. ++.++-|..|
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 35899999 9999999999999999999986 4777777654
No 135
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.15 E-value=0.0023 Score=47.61 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=44.5
Q ss_pred CcEEEEEEEcCCCCCC--Ch--hhHHHHHHHHHHH-hhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 108 KKYVILFFYPLDFTFV--CP--TEITAFSDRYTEF-EKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 108 k~~vlL~f~~~t~Cp~--C~--~~~~~l~~~~~~~-~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
+.++|++|| +.||++ |+ ...|.+.++..++ ++.++.|+-|.+|.. ....+++ ++.+++--++..
T Consensus 27 ~~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~---~~La~~~----~I~~iPTl~lfk 95 (120)
T cd03065 27 DVLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD---AKVAKKL----GLDEEDSIYVFK 95 (120)
T ss_pred CceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC---HHHHHHc----CCccccEEEEEE
Confidence 347788888 899987 99 6677788888876 345788988988863 3444455 555666444543
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.11 E-value=0.0028 Score=41.47 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
|..|+ ++|||+|....+.|.++.++. .++++.-|.+++
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~ 40 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAAE 40 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEccc
Confidence 66777 899999999989888886543 357887777765
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.11 E-value=0.00065 Score=54.65 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=36.0
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+|||.|| ++||++|+...+.|.++..+|. ++.++-|.++.
T Consensus 103 ~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~ 143 (192)
T cd02988 103 TWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ 143 (192)
T ss_pred CEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence 38999999 9999999999999999999986 47888887764
No 138
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.11 E-value=0.0011 Score=44.99 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~ 154 (208)
.+.|| ++|||.|....+.+.++.+++.. .+++ +.+|+.+
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~--~~v~~~~ 40 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELGI-DAEF--EKVTDMN 40 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEE--EEeCCHH
Confidence 47788 79999999999999999988753 2444 5666543
No 139
>PTZ00102 disulphide isomerase; Provisional
Probab=97.01 E-value=0.001 Score=60.08 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=44.0
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCC--eEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
+.++|.|| +.||+.|+...|.+.++.+++++.+ +.+.-|..+. .....++. ++.++|--++.+.+
T Consensus 50 ~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---~~~l~~~~----~i~~~Pt~~~~~~g 116 (477)
T PTZ00102 50 EIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---EMELAQEF----GVRGYPTIKFFNKG 116 (477)
T ss_pred CcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---CHHHHHhc----CCCcccEEEEEECC
Confidence 37999999 9999999999999999998887554 5555555443 23444444 44455544444433
No 140
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.84 E-value=0.0023 Score=52.18 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=41.6
Q ss_pred ccCCcEEEEEEEc--CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEE
Q 028461 105 YIGKKYVILFFYP--LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLI 177 (208)
Q Consensus 105 ~~gk~~vlL~f~~--~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l 177 (208)
.++. ..++.|.. +.||++|+...|.+.++.+++. ++++..|.+|.. ...+..+++ ++..++--++
T Consensus 17 ~~~~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~-~~~~l~~~~----~V~~~Pt~~~ 83 (215)
T TIGR02187 17 LKNP-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTP-EDKEEAEKY----GVERVPTTII 83 (215)
T ss_pred cCCC-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCc-ccHHHHHHc----CCCccCEEEE
Confidence 3444 56767773 3999999999999999998884 466666666632 233344444 4444443344
No 141
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.82 E-value=0.00045 Score=52.10 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-hhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..+.. +..+|+|. .+|||.|...+|.|.++.+... ++++=.|..|+ .+.+.++.. . |...+|.-++.|.+
T Consensus 37 ~~~~~-~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt-~----g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 37 KSIQK-PYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLT-N----GGRSIPTFIFLDKD 107 (129)
T ss_dssp HT--S--EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT------SS--SSEEEEE-TT
T ss_pred HhcCC-CcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHh-C----CCeecCEEEEEcCC
Confidence 34444 37788887 9999999999999999998754 56655556553 233433433 1 33356666777766
Q ss_pred c
Q 028461 182 K 182 (208)
Q Consensus 182 ~ 182 (208)
+
T Consensus 108 ~ 108 (129)
T PF14595_consen 108 G 108 (129)
T ss_dssp -
T ss_pred C
Confidence 3
No 142
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.78 E-value=0.0038 Score=41.60 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
|..|| .+|||.|+...+.|.++ |+++-.|.++......++.+.. +.+...+|.+.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~----~~~~~~vP~i~ 56 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSV----NNGNMTVPTVK 56 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHH----hCCCceeCEEE
Confidence 45666 89999999977766443 5565567776544444555444 21234566664
No 143
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.77 E-value=0.0025 Score=56.95 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=37.8
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhh-C-CeEEEEEeCCCh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEK-L-NTEILGVSTDSV 153 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~-~-gv~vi~Vs~d~~ 153 (208)
+.+||.|| ++||++|....|.+.++.+++++ . ++.++.|..+..
T Consensus 365 ~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 365 KDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 37999999 99999999999999999999986 2 688888877643
No 144
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.68 E-value=0.0093 Score=49.10 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCe---EEEEEeCCChhhHH-
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNT---EILGVSTDSVFSHL- 157 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv---~vi~Vs~d~~~~~~- 157 (208)
...|..++. + ..-+.+..|+ ++||-+..+ +|..|..++..|..+..++.+.|+ .++.|+--+.....
T Consensus 8 ~~~p~W~i~---~----~~pm~~~~G~-VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 8 KPPPPWKIG---G----QDPMLNSLGH-VTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCCceEC---C----chHhhhcCCc-EEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHH
Confidence 445666663 2 2355678897 788888855 699999999999999999988775 45555433222221
Q ss_pred HHHHHhhhcCCCCCCcceEEE-c-CccHHHHHhCCccCC
Q 028461 158 AWVQTDRKSGGLGDLKYPLIA-D-ITKSISKSYGVLIPD 194 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~-D-~~~~v~~~~gV~~~~ 194 (208)
-|.-+.+ -...|+++. | .+..|+..++-..++
T Consensus 79 ~~~l~~r-----~~~~ipVyqq~~~q~dvW~~L~G~kdD 112 (238)
T PF04592_consen 79 YWELKRR-----VSEHIPVYQQDENQPDVWELLNGSKDD 112 (238)
T ss_pred HHHHHHh-----CCCCCceecCCccccCHHHHhCCCcCc
Confidence 1222220 134588886 3 457899999876554
No 145
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.64 E-value=0.0086 Score=42.06 Aligned_cols=64 Identities=13% Similarity=0.022 Sum_probs=43.1
Q ss_pred ccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEE
Q 028461 103 SDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLI 177 (208)
Q Consensus 103 sd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l 177 (208)
.++++. .-+..|+ +.||+.|+...+.+.++.+++. ++++..|.+++ .....+++ +....|.-++
T Consensus 8 ~~l~~p-v~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~---~~e~a~~~----~V~~vPt~vi 71 (89)
T cd03026 8 RRLNGP-INFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL---FQDEVEER----GIMSVPAIFL 71 (89)
T ss_pred HhcCCC-EEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh---CHHHHHHc----CCccCCEEEE
Confidence 456654 6677777 8999999999888888887664 57777777664 23445555 4444444443
No 146
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0025 Score=52.85 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=35.6
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
|.+++++.|+ ++||.+|....|.+.++..+|+ |..++=|.||.
T Consensus 20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~ 62 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE 62 (288)
T ss_pred CceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH
Confidence 3348999999 9999999999999999999995 55666666653
No 147
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.52 E-value=0.012 Score=42.87 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=46.6
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHH-HH--HHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC-c
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITA-FS--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI-T 181 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~-l~--~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-~ 181 (208)
.+| +++|+|+ ++||+.|...... |. ++.+.++ ++...+.+.+++++ ..++.+.+ +..++|..++.|+ +
T Consensus 16 ~~K-~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~----~~~~~P~~~~i~~~~ 87 (114)
T cd02958 16 EKK-WLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSY----KVDKYPHIAIIDPRT 87 (114)
T ss_pred hCc-eEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHh----CccCCCeEEEEeCcc
Confidence 455 8999998 9999999865432 21 2333333 35666667776643 44566666 5557888888898 5
Q ss_pred cHHH
Q 028461 182 KSIS 185 (208)
Q Consensus 182 ~~v~ 185 (208)
+++.
T Consensus 88 g~~l 91 (114)
T cd02958 88 GEVL 91 (114)
T ss_pred CcEe
Confidence 5543
No 148
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.49 E-value=0.0037 Score=47.20 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=39.8
Q ss_pred ccCCcEEEEEEEcCCCCCCChhhHHHHHH--HHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 105 YIGKKYVILFFYPLDFTFVCPTEITAFSD--RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 105 ~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~--~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
-.+| +++|+|+ ++||+.|+..-...-+ -..++-++++.+|-+..|..+ +.... .+ ..+|-.++.|+++
T Consensus 21 ~~~K-pvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td------~~~~~-~g-~~vPtivFld~~g 90 (130)
T cd02960 21 KSNK-PLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD------KNLSP-DG-QYVPRIMFVDPSL 90 (130)
T ss_pred HCCC-eEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC------CCcCc-cC-cccCeEEEECCCC
Confidence 3465 8999998 9999999876554321 222222334433334333211 00000 12 2577778899986
Q ss_pred HHHHH
Q 028461 183 SISKS 187 (208)
Q Consensus 183 ~v~~~ 187 (208)
++...
T Consensus 91 ~vi~~ 95 (130)
T cd02960 91 TVRAD 95 (130)
T ss_pred CCccc
Confidence 54443
No 149
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.15 E-value=0.0075 Score=55.60 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=51.7
Q ss_pred cccCCcEEEEEEEcCCCCCCChhhHHH-HHHHHHHHhhCCeEEEEEeC-CChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 104 DYIGKKYVILFFYPLDFTFVCPTEITA-FSDRYTEFEKLNTEILGVST-DSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 104 d~~gk~~vlL~f~~~t~Cp~C~~~~~~-l~~~~~~~~~~gv~vi~Vs~-d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
+-++| +|+|+|+ ++||-.|+..-+. +.+.+.+++-.|+..+=+.+ ++...+.+.++++ +.-+++..++.|.+
T Consensus 471 ~~~~~-pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~----~~~G~P~~~ff~~~ 544 (569)
T COG4232 471 EAKAK-PVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL----GVFGVPTYLFFGPQ 544 (569)
T ss_pred hCCCC-cEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc----CCCCCCEEEEECCC
Confidence 34454 9999999 9999999855443 54666666666777766644 2334567777777 66678888999866
Q ss_pred c
Q 028461 182 K 182 (208)
Q Consensus 182 ~ 182 (208)
+
T Consensus 545 g 545 (569)
T COG4232 545 G 545 (569)
T ss_pred C
Confidence 4
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.14 E-value=0.032 Score=45.37 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=37.1
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
..|+.|| ++|||+|+...+.+.++..+. .++.+.-|..+. .....+++ ++..+|--++.+
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~---~~~~~~~~----~V~~vPtl~i~~ 194 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAN--DKILGEMIEANE---NPDLAEKY----GVMSVPKIVINK 194 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCC---CHHHHHHh----CCccCCEEEEec
Confidence 4566688 999999998777777766553 246665555544 22344444 554555555544
No 151
>smart00594 UAS UAS domain.
Probab=96.02 E-value=0.038 Score=40.89 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=46.6
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHH-H--HHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAF-S--DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK 182 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l-~--~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 182 (208)
.+| .++|+|+ +.||+.|....... . ++.+.+ ++++.++.+.+++.+. .++.+.+ +..++|+.++.|+++
T Consensus 26 ~~K-~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~----~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRR-LLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFY----KLDSFPYVAIVDPRT 97 (122)
T ss_pred hcC-CEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhc----CcCCCCEEEEEecCC
Confidence 455 8899998 99999998765442 1 122223 3467777777777654 4666666 555788888888875
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.00 E-value=0.037 Score=35.99 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh-hHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF-SHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
|..|+ .+|||.|....+.|.+ .|+.+..+.+++.. ..+++.+.. +. ..+|.+.+.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~----~~--~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVL----GQ--RGVPVIVIG 57 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHh----CC--CcccEEEEC
Confidence 34555 8999999987666543 57888888886533 334455554 32 346666554
No 153
>PHA02125 thioredoxin-like protein
Probab=95.79 E-value=0.02 Score=38.59 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCChhhHHHHHHH
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDR 134 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~ 134 (208)
|+.|| ++||++|+...|.|.++
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHH
Confidence 67888 99999999988887643
No 154
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.012 Score=53.64 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL 141 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~ 141 (208)
+| -|||.|| +.||++|...-|.++++.+.|++.
T Consensus 384 ~K-dVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 384 GK-DVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cc-ceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 44 5999999 999999999999999999999975
No 155
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.39 E-value=0.034 Score=37.61 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
+.|+ .+|||.|....+.|.++. .+ ..++++-|..+
T Consensus 2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 4555 899999999998888764 22 12667766664
No 156
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.03 Score=51.07 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+..++++.|| +.||..|....|.+.+..+++++.|-.|--.=+|..+. .....++
T Consensus 41 ~~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y 95 (493)
T KOG0190|consen 41 GHEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKY 95 (493)
T ss_pred cCceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhh
Confidence 3457889999 99999999999999999999998754444444555444 5555555
No 157
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.40 E-value=0.21 Score=32.26 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..|. ..|||.|......|.+ .|+++..+.+|......++..+.. + ...+|.+.+.+
T Consensus 3 ~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~---~--~~~vP~i~~~~ 58 (73)
T cd02976 3 TVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLN---G--YRSVPVVVIGD 58 (73)
T ss_pred EEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHc---C--CcccCEEEECC
Confidence 3444 7999999986555443 477777777775333333333331 1 24677776654
No 158
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.37 E-value=0.26 Score=36.43 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=34.2
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhC--CeEEEEEeCCChh--hHHHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKL--NTEILGVSTDSVF--SHLAWVQTD 163 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~--gv~vi~Vs~d~~~--~~~~~~~~~ 163 (208)
+.+|+.|+ ++| |.|.. +|.++++.+++.+. .+.|--|..++.. ..+...+++
T Consensus 19 ~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 19 KYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHh
Confidence 57899998 977 67775 59999999998543 2444445654421 234566666
No 159
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=94.08 E-value=0.55 Score=36.53 Aligned_cols=111 Identities=8% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCCCCCCCCeEEeee-------cCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHH--HhhCCeEEEEE
Q 028461 78 PLVGNTAPDFAAEAV-------FDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE--FEKLNTEILGV 148 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~-------~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~--~~~~gv~vi~V 148 (208)
+.+|+++|..++.+- ++...++++...+.|| +-||.-. +.-+-.......|.+..++ |.....+..+|
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GK-Vrviq~i--AGr~sake~N~~l~~aik~a~f~~d~yqtttI 77 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGK-VRVIQHI--AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTI 77 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccccCCC-EEEEEEe--ccCCchhHhhHHHHHHHHHcCCCccceeEEEE
Confidence 357888888776521 1122457888889998 3333333 2234445555555443333 55556777766
Q ss_pred -eCCCh-hhHHHHHHHhhhcCCCCCCcce-EEEcCccHHHHHhCCcc
Q 028461 149 -STDSV-FSHLAWVQTDRKSGGLGDLKYP-LIADITKSISKSYGVLI 192 (208)
Q Consensus 149 -s~d~~-~~~~~~~~~~~~~~~~~~~~f~-~l~D~~~~v~~~~gV~~ 192 (208)
+.||. .-..-|.+...++.. ..++|. ++.|.+|.+.++|++..
T Consensus 78 iN~dDAi~gt~~fVrss~e~~k-k~~p~s~~vlD~~G~~~~aW~L~~ 123 (160)
T PF09695_consen 78 INLDDAIWGTGGFVRSSAEDSK-KEFPWSQFVLDSNGVVRKAWQLQE 123 (160)
T ss_pred EecccccccchHHHHHHHHHhh-hhCCCcEEEEcCCCceeccccCCC
Confidence 77663 112223332221111 156777 68999999999999853
No 160
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.97 E-value=0.17 Score=32.48 Aligned_cols=52 Identities=10% Similarity=-0.130 Sum_probs=33.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..|||.|+.....|.+. ++.+.-+.++......+++++.. + ...+|.+...+
T Consensus 7 ~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~---~--~~~~P~~~~~~ 58 (72)
T cd02066 7 KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELS---G--WPTVPQIFING 58 (72)
T ss_pred CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHh---C--CCCcCEEEECC
Confidence 78999999887777643 56777777766555566665542 1 24566665533
No 161
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.95 E-value=0.23 Score=34.06 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
|..|. .+|||.|......|.++..++ .|+.+.-|.++.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 34444 899999999999999887665 367777777754
No 162
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.78 E-value=0.12 Score=38.34 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=31.3
Q ss_pred cCCcEEEEEEEcC------CCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 106 IGKKYVILFFYPL------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 106 ~gk~~vlL~f~~~------t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.|+ .+.|+|+.. +|||.|....|.+++...+..+ +..+|-|.+.+
T Consensus 18 ~~~-~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~ 68 (119)
T PF06110_consen 18 SGK-PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGD 68 (119)
T ss_dssp TTS-EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---
T ss_pred CCC-eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCC
Confidence 344 677777733 5999999999999998877443 78888888866
No 163
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.21 Score=44.16 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=36.9
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+..++.|| +.||+.|....|.+.++...+++ -+.+. .+|. ..+++..+++
T Consensus 48 ~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~--~vd~-~~~~~~~~~y 97 (383)
T KOG0191|consen 48 SPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIG--AVDC-DEHKDLCEKY 97 (383)
T ss_pred CceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEE--EeCc-hhhHHHHHhc
Confidence 47899999 99999999999999999888876 23333 4433 2455666666
No 164
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.14 Score=37.99 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=36.2
Q ss_pred cCCcEEEEEEEcC-------CCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHH
Q 028461 106 IGKKYVILFFYPL-------DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 162 (208)
Q Consensus 106 ~gk~~vlL~f~~~-------t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 162 (208)
.|+ .+.+.|... +|||.|....|-+.+..+...+ ++.+|.|-+.+ ...|..-
T Consensus 24 n~~-~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~---rp~Wk~p 82 (128)
T KOG3425|consen 24 NGK-TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGN---RPYWKDP 82 (128)
T ss_pred CCc-eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecC---CCcccCC
Confidence 455 366666533 5999999999999988775544 78888887765 3345443
No 165
>PHA03050 glutaredoxin; Provisional
Probab=93.21 E-value=0.22 Score=36.18 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.1
Q ss_pred EEEEEcCCCCCCChhhHHHHHHH
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDR 134 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~ 134 (208)
|+.|. .+|||+|......|.++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 44444 79999998776666543
No 166
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.82 E-value=0.28 Score=33.21 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
|..|. .+|||.|......|. +.|+.+..+.++.......+.+.. + ...+|.+...
T Consensus 10 V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~----g--~~~vP~i~i~ 64 (79)
T TIGR02190 10 VVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVT----G--ATTVPQVFIG 64 (79)
T ss_pred EEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHH----C--CCCcCeEEEC
Confidence 44444 899999998777764 347777777776544444554433 2 3467766543
No 167
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.16 E-value=0.44 Score=30.21 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
+.|. ..+||.|......| ++.|+.+-.+.++.....++.+++.. + ..++|.+.
T Consensus 2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~---g--~~~~P~v~ 54 (60)
T PF00462_consen 2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELS---G--VRTVPQVF 54 (60)
T ss_dssp EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHH---S--SSSSSEEE
T ss_pred EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHc---C--CCccCEEE
Confidence 4455 78999998876666 44578888888876544444444432 2 35666554
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.99 E-value=0.57 Score=32.08 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..+|||.|......| +++|+.+--|.++......++.+.. | ...+|++...+
T Consensus 7 t~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~----g--~~~vPvv~i~~ 58 (81)
T PRK10329 7 TRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQ----G--FRQLPVVIAGD 58 (81)
T ss_pred eCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHc----C--CCCcCEEEECC
Confidence 479999999866555 3468888888887533333333322 2 33567665544
No 169
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.75 E-value=0.47 Score=33.78 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=31.7
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
.++|+ . .+|||.|......|.+ .|+.+-.|.+|......++.+...+..| ..++|.+.
T Consensus 9 ~Vvvy-s-k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~~~~~~~~~~~l~~~tg--~~tvP~Vf 66 (99)
T TIGR02189 9 AVVIF-S-RSSCCMCHVVKRLLLT-------LGVNPAVHEIDKEPAGKDIENALSRLGC--SPAVPAVF 66 (99)
T ss_pred CEEEE-E-CCCCHHHHHHHHHHHH-------cCCCCEEEEcCCCccHHHHHHHHHHhcC--CCCcCeEE
Confidence 34444 3 6999999976654443 3565555666644344444444433222 33566554
No 170
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=91.38 E-value=0.58 Score=32.25 Aligned_cols=34 Identities=9% Similarity=-0.078 Sum_probs=23.2
Q ss_pred EcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 116 YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 116 ~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
|..+|||.|......|.++..++. ++.+.-+.++
T Consensus 5 ys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 5 FGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 347999999988888876643332 4556666665
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.37 E-value=0.34 Score=32.07 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=32.6
Q ss_pred EcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 116 YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 116 ~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
|...+||.|......|.+ .|+.+-.+.++......++.+.. | ...+|++...
T Consensus 4 y~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~----g--~~~vP~v~~~ 55 (72)
T TIGR02194 4 YSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQ----G--FRQVPVIVAD 55 (72)
T ss_pred EeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHc----C--CcccCEEEEC
Confidence 347889999987777753 57777777776544444444433 2 2357766653
No 172
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.77 Score=31.37 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=32.3
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh--hhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV--FSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~--~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
-++||+|......|. ++|+++.-|.++.. +..+.+++... +..++|.+...+
T Consensus 8 ~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~-----g~~tvP~I~i~~ 61 (80)
T COG0695 8 KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGK-----GQRTVPQIFIGG 61 (80)
T ss_pred CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhC-----CCCCcCEEEECC
Confidence 577999987766665 45776666555443 35556666541 245677666554
No 173
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=91.04 E-value=1.3 Score=34.80 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=57.6
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccc---cCCcEEEEEEEcCCCCCCChhhHHHHHHHHH-------HHhhC------
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYT-------EFEKL------ 141 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~---~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~-------~~~~~------ 141 (208)
+.+|..+|+..+.. -.+|+++.|.+. .|+ +-|++|-.-.-.+.+...+..|.+..+ .|..+
T Consensus 30 l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGr-fri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 30 LRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGR-FRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp S-TTCB----EEEE--TTTTEEEEGGGG--SSS--EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred cCCccccCCceEEE--EcCCCChhHhhhcccCCC-EEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 89999999999974 478889999874 355 888888733333344444555554432 33332
Q ss_pred CeEEEEEeCCC--hhhHHHHHHHhhhcCCCCC-CcceEEEcC------ccHHHHHhCCccC
Q 028461 142 NTEILGVSTDS--VFSHLAWVQTDRKSGGLGD-LKYPLIADI------TKSISKSYGVLIP 193 (208)
Q Consensus 142 gv~vi~Vs~d~--~~~~~~~~~~~~~~~~~~~-~~f~~l~D~------~~~v~~~~gV~~~ 193 (208)
-++++.|...+ ..+..++-+-.++..+..+ .-+.++.|. .+.+.+.|||..+
T Consensus 107 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 107 VFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp SEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred eeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 27888886543 2222232222222111111 346677775 3889999997543
No 174
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.68 E-value=0.53 Score=35.07 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=27.2
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V 148 (208)
.+|+.|+ --+||.|....+.+.++..++.+ ++++.+
T Consensus 7 ~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 7 VTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred EEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 6777777 77899999999999988776643 444443
No 175
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.64 E-value=0.58 Score=31.28 Aligned_cols=34 Identities=6% Similarity=0.203 Sum_probs=22.9
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+.|. ..|||.|......|.++.. ..+++-|..++
T Consensus 3 ~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 3 VVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 4444 8999999988887776532 34555566554
No 176
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.29 E-value=0.79 Score=32.50 Aligned_cols=59 Identities=7% Similarity=-0.091 Sum_probs=34.3
Q ss_pred EEEEEEEc---CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 110 YVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 110 ~vlL~f~~---~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
.++|+... .+|||+|......|.+ .|+.+..+.+++.....+.+++. .| ..++|.+.-.
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~---tg--~~tvP~vfi~ 74 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEY---SN--WPTIPQLYVK 74 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHH---hC--CCCCCEEEEC
Confidence 56766541 2799999877666644 36676677775433444444443 12 3366665543
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.19 E-value=0.89 Score=34.37 Aligned_cols=49 Identities=4% Similarity=-0.019 Sum_probs=35.4
Q ss_pred EecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHH-hhCCeEEEEEeC
Q 028461 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVST 150 (208)
Q Consensus 100 v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~-~~~gv~vi~Vs~ 150 (208)
+.+.+-.++ .+|..|+ --.||+|....+.+.++.+++ .+..+.++.+.+
T Consensus 5 ~~~G~~~a~-~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAP-ITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTS-EEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCC-eEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 445555555 6777777 556999999999999999998 333678887766
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.11 E-value=0.99 Score=29.66 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=21.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~ 154 (208)
.+|||.|......|. +.|+.+.-+.++...
T Consensus 8 ~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~ 37 (72)
T cd03029 8 KPGCPFCARAKAALQ-------ENGISYEEIPLGKDI 37 (72)
T ss_pred CCCCHHHHHHHHHHH-------HcCCCcEEEECCCCh
Confidence 789999998866555 346776667776543
No 179
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.46 E-value=1.2 Score=30.97 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=31.6
Q ss_pred EEEEEEEcC----CCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 110 YVILFFYPL----DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 110 ~vlL~f~~~----t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
+++|+-- + .|||.|......|.+ .|+.+..+.++......+.+.+. .| ..++|.+.-
T Consensus 9 ~vvvf~k-~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~l~~~---~g--~~tvP~vfi 69 (90)
T cd03028 9 PVVLFMK-GTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQGLKEY---SN--WPTFPQLYV 69 (90)
T ss_pred CEEEEEc-CCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHHHHHH---hC--CCCCCEEEE
Confidence 5666643 3 589999876666654 35666666664433444444443 12 345665543
No 180
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.22 E-value=2 Score=28.15 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=30.4
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh-hhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV-FSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~-~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
..++||.|......|++ .|+.+-.+.++.. +...++.+.. +- ...+|.+.-.
T Consensus 6 ~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~----~~-~~~vP~v~i~ 58 (75)
T cd03418 6 TKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRS----GG-RRTVPQIFIG 58 (75)
T ss_pred eCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHh----CC-CCccCEEEEC
Confidence 37999999987666653 4677777777653 3334444333 11 1257766543
No 181
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=1.3 Score=39.24 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=34.1
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhh-CCeEEEEEeCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LNTEILGVSTD 151 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~-~gv~vi~Vs~d 151 (208)
..++.|+ +.||++|+...|.+.++..+++. .++++..+..+
T Consensus 164 ~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 164 DWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred ceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 4677777 99999999999999999999873 66777777665
No 182
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=87.52 E-value=0.82 Score=39.40 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=32.0
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCC--eEEEEEeCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLN--TEILGVSTD 151 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g--v~vi~Vs~d 151 (208)
.++|.|+ ++||+..+...|.+.+..+.++++. -++|.=.||
T Consensus 15 lvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VD 57 (375)
T KOG0912|consen 15 LVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVD 57 (375)
T ss_pred EEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcc
Confidence 7899999 9999999999999999888876542 245444454
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=87.20 E-value=2.2 Score=28.94 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=30.9
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEc
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 179 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D 179 (208)
...|||.|......|.+ +|+.+.-+.++......++..+.. + ...+|.+..
T Consensus 8 ~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~---g--~~~vP~i~~ 58 (83)
T PRK10638 8 TKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRS---G--RTTVPQIFI 58 (83)
T ss_pred ECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHh---C--CCCcCEEEE
Confidence 37889999987666653 467766677765443444444331 2 335776643
No 184
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=86.78 E-value=3 Score=27.39 Aligned_cols=28 Identities=7% Similarity=-0.078 Sum_probs=20.8
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
..+||.|......|.+ .|+.+..+.++.
T Consensus 8 ~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 8 RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 6889999987766654 477777777764
No 185
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=86.23 E-value=1.4 Score=32.45 Aligned_cols=86 Identities=7% Similarity=0.093 Sum_probs=55.0
Q ss_pred ecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCCh---------hhHHHHHHHhhhcCCCCC
Q 028461 101 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSV---------FSHLAWVQTDRKSGGLGD 171 (208)
Q Consensus 101 ~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~---------~~~~~~~~~~~~~~~~~~ 171 (208)
.|+++++++-+||+|-|..--+.-..++..|.+....+.++++.++.|.-+.. +...+..+.+ .+..
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l----~~~~ 77 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRL----RIPP 77 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHh----CCCC
Confidence 36788888778888877665666677888888878888899988888743332 2223444444 3322
Q ss_pred Ccce-EEEcCccHHHHHhCC
Q 028461 172 LKYP-LIADITKSISKSYGV 190 (208)
Q Consensus 172 ~~f~-~l~D~~~~v~~~~gV 190 (208)
-.|. +|.+.||.+-..++.
T Consensus 78 ~~f~~vLiGKDG~vK~r~~~ 97 (118)
T PF13778_consen 78 GGFTVVLIGKDGGVKLRWPE 97 (118)
T ss_pred CceEEEEEeCCCcEEEecCC
Confidence 2333 556666665555544
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=85.37 E-value=0.99 Score=33.27 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=28.7
Q ss_pred CCcEEEEEEEcC----CCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 107 GKKYVILFFYPL----DFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 107 gk~~vlL~f~~~----t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.++.|||+.- + .|||+|.....-|.++ |+++-.+.++.....+..+++.
T Consensus 13 ~~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~ 65 (115)
T PRK10824 13 AENPILLYMK-GSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKY 65 (115)
T ss_pred hcCCEEEEEC-CCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHH
Confidence 3335666654 4 4999999877766553 4444445554433455555554
No 187
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=83.79 E-value=1.9 Score=33.79 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=36.2
Q ss_pred EecccccCCcEEEEEEEcCCCCCCChhhH-HHHHH--HHHHHhhCCeEEEEEeCC--C-hhhHHHHHHHhhhcCCCCCCc
Q 028461 100 VKLSDYIGKKYVILFFYPLDFTFVCPTEI-TAFSD--RYTEFEKLNTEILGVSTD--S-VFSHLAWVQTDRKSGGLGDLK 173 (208)
Q Consensus 100 v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~-~~l~~--~~~~~~~~gv~vi~Vs~d--~-~~~~~~~~~~~~~~~~~~~~~ 173 (208)
+..+.-.+| +++|.+. .+||..|.... ..+.+ +.+.+. + .+|.|-+| . ++....+..-.....+.++.+
T Consensus 30 ~~~Ak~e~K-pIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN-~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 30 LEKAKKENK-PIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN-R--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHT---EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH-H--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHhcCC-cEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh-C--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 334444565 8899998 89999998443 22322 222222 2 35555444 3 343344433222222445788
Q ss_pred ceEEEcCccH
Q 028461 174 YPLIADITKS 183 (208)
Q Consensus 174 f~~l~D~~~~ 183 (208)
..++.+++++
T Consensus 105 l~vfltPdg~ 114 (163)
T PF03190_consen 105 LTVFLTPDGK 114 (163)
T ss_dssp EEEEE-TTS-
T ss_pred ceEEECCCCC
Confidence 8888888864
No 188
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.64 E-value=0.32 Score=44.97 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=33.4
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhh-CC-eEEEEEeCCChh
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEK-LN-TEILGVSTDSVF 154 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~-~g-v~vi~Vs~d~~~ 154 (208)
.-+|.|+ .+||+.|+...|.++++.+.+++ .+ +.|.+|..-+.+
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~ 104 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE 104 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh
Confidence 4588998 99999999999999999888764 23 445566664433
No 189
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.26 E-value=2.2 Score=34.36 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=26.1
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHH---HHHHHHHhhCCeEEEEEeC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l---~~~~~~~~~~gv~vi~Vs~ 150 (208)
.|+ +.|+.|+... ||+|....+.+ .++.+.+.+ ++.++-+.+
T Consensus 36 ~~~-~~VvEffdy~-CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 36 AGE-PQVLEFFSFY-CPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCC-CeEEEEeCCC-CccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 355 5566666355 99999877655 556666543 566554433
No 190
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=82.50 E-value=1.8 Score=32.43 Aligned_cols=64 Identities=5% Similarity=-0.028 Sum_probs=39.2
Q ss_pred EEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--CC--hhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhC
Q 028461 114 FFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DS--VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (208)
Q Consensus 114 ~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d~--~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~g 189 (208)
.+|...+|+.|+....-|. +.|+.+-.+.+ ++ .+.+.+|.+.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhCC
Confidence 3444789999998665443 44666666654 22 36677788776 3445445555566666665
Q ss_pred Cc
Q 028461 190 VL 191 (208)
Q Consensus 190 V~ 191 (208)
..
T Consensus 69 ~~ 70 (131)
T PRK01655 69 VD 70 (131)
T ss_pred CC
Confidence 53
No 191
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=81.61 E-value=0.76 Score=39.55 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=32.7
Q ss_pred cccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEE
Q 028461 104 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI 145 (208)
Q Consensus 104 d~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~v 145 (208)
|.+....-++.|| +.||..|++..|.+.+.-.++++.|+-|
T Consensus 39 dnkdddiW~VdFY-APWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 39 DNKDDDIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred hcccCCeEEEEee-chhhhhcccccchhHHhCcchhhcCCce
Confidence 3444445688999 9999999999999999888888877654
No 192
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=81.55 E-value=3.7 Score=27.27 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=20.0
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
...+||.|......|.+ .|+.+--+.++.
T Consensus 5 ~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~ 33 (79)
T TIGR02181 5 TKPYCPYCTRAKALLSS-------KGVTFTEIRVDG 33 (79)
T ss_pred ecCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence 37999999987777754 356555555554
No 193
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=81.14 E-value=3.7 Score=32.34 Aligned_cols=38 Identities=8% Similarity=0.032 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.-.|.+.++.++.+++|+.++.||-+.......|.+..
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 45788999999999999999999999988888888866
No 194
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=80.21 E-value=3.1 Score=28.19 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=36.0
Q ss_pred EcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 116 YPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 116 ~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
+....|+.|......|.++. .+.++++..|.+++ ..+|.+++ ++..|++.-.+
T Consensus 5 ~~k~~C~LC~~a~~~L~~~~---~~~~~~l~~vDI~~---d~~l~~~Y-------~~~IPVl~~~~ 57 (81)
T PF05768_consen 5 YTKPGCHLCDEAKEILEEVA---AEFPFELEEVDIDE---DPELFEKY-------GYRIPVLHIDG 57 (81)
T ss_dssp EE-SSSHHHHHHHHHHHHCC---TTSTCEEEEEETTT---THHHHHHS-------CTSTSEEEETT
T ss_pred EcCCCCChHHHHHHHHHHHH---hhcCceEEEEECCC---CHHHHHHh-------cCCCCEEEEcC
Confidence 34677999998777776543 24468888888874 33388887 66788776544
No 195
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.19 E-value=6 Score=32.36 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=33.2
Q ss_pred CCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeE
Q 028461 94 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTE 144 (208)
Q Consensus 94 ~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~ 144 (208)
..+++.+...+..++ ++++.|.-.. ||.|...++.+.+.+-...+..+.
T Consensus 71 ~~~~~~~~~G~~~~~-v~v~~f~d~~-Cp~C~~~~~~l~~~~i~~~~~~~~ 119 (244)
T COG1651 71 TPDGKDVVLGNPYAP-VTVVEFFDYT-CPYCKEAFPELKKKYIDDGKVRLV 119 (244)
T ss_pred cCCCCcccccCCCCC-ceEEEEecCc-CccHHHHHHHHHHHhhhcCCCceE
Confidence 344455555665555 6777887445 999999999999876666554333
No 196
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=79.45 E-value=2.1 Score=30.45 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=34.3
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC----ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
+|...+|+.|+.....|.+ +|+.+-.|.+. +...+.+|.+.. +.++.-+....+..++..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~-------~~~~~~li~~~~~~~~~l~~ 68 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL-------GLGVEDLFNTRGTPYRKLGL 68 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc-------CCCHHHHHhcCCchHHHcCC
Confidence 3447889999987655543 46665555542 234556666554 33344333444455555444
No 197
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=79.11 E-value=3.5 Score=34.05 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=26.4
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V 148 (208)
.|+ .+|++|. -..||+|+...+.+.++ .+.|++|..+
T Consensus 106 ~~k-~~I~vFt-Dp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEK-HVITVFT-DITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCC-EEEEEEE-CCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 355 6787887 56699999988887655 3457777654
No 198
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.10 E-value=2.2 Score=30.89 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=26.9
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--CC--hhhHHHHHHHh
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--DS--VFSHLAWVQTD 163 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d~--~~~~~~~~~~~ 163 (208)
+|.-.+||.|+....-|.+ +|+.+..+.+ ++ .+....|.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 3447889999987766654 4666555554 22 45667777765
No 199
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=79.02 E-value=3.3 Score=30.14 Aligned_cols=63 Identities=6% Similarity=-0.076 Sum_probs=40.9
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC----ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
+|....|+.|+.....|.+ .|+++-.+.+. +....++|.+.. +.++.-+....+...+.++.
T Consensus 4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l~~ 69 (115)
T cd03032 4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNLNI 69 (115)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHcCC
Confidence 3446889999986665543 46666666552 246677788776 44566555666777777665
Q ss_pred c
Q 028461 191 L 191 (208)
Q Consensus 191 ~ 191 (208)
.
T Consensus 70 ~ 70 (115)
T cd03032 70 D 70 (115)
T ss_pred C
Confidence 3
No 200
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.51 E-value=5 Score=30.74 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=29.3
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V 148 (208)
.++ ..|+.|+ --.||.|....+.+.++.+++.+ ++.+.-+
T Consensus 14 ~~~-~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGK-PEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCC-cEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 354 6777777 45599999999999998888743 5665544
No 201
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=77.01 E-value=4.6 Score=29.43 Aligned_cols=60 Identities=5% Similarity=-0.107 Sum_probs=37.3
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC----hhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS----VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~----~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
....||.|+....-|.+ .|+++..|.+.. .....+|.+.. +.++.-+.+..+...+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred eCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCCc
Confidence 36789999987766654 467766666532 24455566655 44455455556666666664
No 202
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=76.78 E-value=8.4 Score=28.19 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=41.8
Q ss_pred cccCCcEEEEEEEcCC----CCCCChhhH--HHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEE
Q 028461 104 DYIGKKYVILFFYPLD----FTFVCPTEI--TAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLI 177 (208)
Q Consensus 104 d~~gk~~vlL~f~~~t----~Cp~C~~~~--~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l 177 (208)
.-.+| +++|+++ .. ||..|+..+ +.+.+.. +.++-+++.++++.+. .+..... +...+|+-.+
T Consensus 14 k~e~K-~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~eg-~~la~~l----~~~~~P~~~~ 82 (116)
T cd02991 14 KQELR-FLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPEG-YRVSQAL----RERTYPFLAM 82 (116)
T ss_pred HhhCC-EEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChHH-HHHHHHh----CCCCCCEEEE
Confidence 33455 8999998 66 788887554 4555544 3467788888887653 4455555 3345666666
Q ss_pred EcC
Q 028461 178 ADI 180 (208)
Q Consensus 178 ~D~ 180 (208)
.++
T Consensus 83 l~~ 85 (116)
T cd02991 83 IML 85 (116)
T ss_pred EEe
Confidence 643
No 203
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=76.48 E-value=7.2 Score=30.94 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.0
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHH
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSD 133 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~ 133 (208)
++ +.|.+|. -..||+|+...+.+.+
T Consensus 77 ~~-~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GK-RVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CC-EEEEEEE-CCCCccHHHHHHHHhh
Confidence 55 6777777 6779999999888876
No 204
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=76.03 E-value=10 Score=25.16 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=16.8
Q ss_pred CCCCCCChhhHHHHHHHHHHH
Q 028461 118 LDFTFVCPTEITAFSDRYTEF 138 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~ 138 (208)
+..||.|......+++..+++
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhc
Confidence 566999998888888777666
No 205
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.88 E-value=6 Score=29.70 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=39.9
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC----ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD----SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d----~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
+|.-.+|+.|+....-| ++.|+++-.+.+. +.+....|.+.. +.++.-+....+...+.++.
T Consensus 4 iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L~~ 69 (132)
T PRK13344 4 IYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKALDC 69 (132)
T ss_pred EEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhCCc
Confidence 44468899999855444 4457766666552 346778888876 44555555566677776664
No 206
>PRK12559 transcriptional regulator Spx; Provisional
Probab=75.57 E-value=5 Score=30.09 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=38.9
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--C--ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
+|.-.+|+.|+....-|. +.|+.+-.+.+ + +.+..+.|.+.. +.++.-+....+...+.++.
T Consensus 4 iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~~ 69 (131)
T PRK12559 4 LYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLNI 69 (131)
T ss_pred EEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCCC
Confidence 444788999998665544 34666555543 3 357778888875 33444444556666666665
Q ss_pred c
Q 028461 191 L 191 (208)
Q Consensus 191 ~ 191 (208)
.
T Consensus 70 ~ 70 (131)
T PRK12559 70 N 70 (131)
T ss_pred C
Confidence 3
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=74.32 E-value=6.2 Score=32.03 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=31.9
Q ss_pred cccccCCcEEEEEEEc---CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 102 LSDYIGKKYVILFFYP---LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 102 Lsd~~gk~~vlL~f~~---~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+.++...++++|+.-. ..+||.|+.....|. +.|+.+..+.+++....++.+++.
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~ 163 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVY 163 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHH
Confidence 4455555567777761 247888877655554 336666666665444444444443
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.64 E-value=14 Score=34.49 Aligned_cols=48 Identities=13% Similarity=-0.066 Sum_probs=31.3
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
..+-+|. +.+||.|+.....++++..+.. |++.-.|...+ ...+.+++
T Consensus 478 ~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~---~~~~~~~~ 525 (555)
T TIGR03143 478 VNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH---FPDLKDEY 525 (555)
T ss_pred eEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc---cHHHHHhC
Confidence 4466666 8889999988887877776644 56555554443 23455555
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=70.80 E-value=9.2 Score=34.34 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=26.2
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
..+|||.|.....-|.+ +|+..-.|.+|......++.++.
T Consensus 8 s~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~~~~~ 47 (410)
T PRK12759 8 TKTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEFYAEV 47 (410)
T ss_pred eCCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHHHHHH
Confidence 37999999876655543 47777677776544444555443
No 210
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=70.52 E-value=7.3 Score=25.94 Aligned_cols=36 Identities=6% Similarity=-0.084 Sum_probs=25.3
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~ 150 (208)
..|+ .-.||.|....+.+.++.... ..++++..+.+
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~~ 37 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYAD-DGGVRVVYRPF 37 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhc-CCcEEEEEecc
Confidence 4455 667999999999999887443 34677665543
No 211
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=69.21 E-value=16 Score=30.94 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHH
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 161 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~ 161 (208)
+.+|-|++. |.+|..+-.++-.|++ +.-.|..-. -.-...+..+++..++.. .+++|+.|+.+....++
T Consensus 80 ~~VPVFtIt---n~~G~pvl~s~~~~~~-~~gvf~s~q--edA~afL~~lk~~~p~l~-~~~kV~pvsL~~vYkl~---- 148 (270)
T TIGR00995 80 AGTSVFTVS---NAQNEFVLASDNDGEK-SIGLLCFRQ--EDAEAFLAQLRKRKPEVG-SQAKVVPITLDQVYKLK---- 148 (270)
T ss_pred cCCceEEEE---cCCCCeEEEECCCCCc-eEEEEECCH--HHHHHHHHHHHhhCcccc-CCceEEEEEHHHHHHHh----
Confidence 567999997 9999998887655653 333332000 001122333333333332 46899999998865442
Q ss_pred HhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 162 TDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 162 ~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
.. ++.|.++-|+ .++-.+.+++
T Consensus 149 ~e-------~l~F~fiP~~-~qV~~A~~ll 170 (270)
T TIGR00995 149 VE-------GIGFRFLPDP-AQIKNALELP 170 (270)
T ss_pred hc-------CccEEEeCCH-HHHHHHHHHH
Confidence 22 5789999986 4666666665
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=69.07 E-value=18 Score=26.07 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=10.5
Q ss_pred EEEEEcCCCCCCChh
Q 028461 112 ILFFYPLDFTFVCPT 126 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~ 126 (208)
|+.|- -+|||.|..
T Consensus 16 VVifS-Ks~C~~c~~ 29 (104)
T KOG1752|consen 16 VVIFS-KSSCPYCHR 29 (104)
T ss_pred EEEEE-CCcCchHHH
Confidence 44444 699999998
No 213
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=68.43 E-value=20 Score=30.06 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=57.6
Q ss_pred CCCCeEEeeecCCCCceEeccc-ccCCcEEEEEEEcCCCCCCChhhHHHHHH-HHHHH-hhC--CeEEEEEeCCChhhHH
Q 028461 83 TAPDFAAEAVFDQEFINVKLSD-YIGKKYVILFFYPLDFTFVCPTEITAFSD-RYTEF-EKL--NTEILGVSTDSVFSHL 157 (208)
Q Consensus 83 ~~P~f~l~~~~~~~g~~v~Lsd-~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~-~~~~~-~~~--gv~vi~Vs~d~~~~~~ 157 (208)
.+|+|... +..|+.+++.+ ++|| ..||..+...|--.|. ..+.. ..++| .+. .+++|-|++.+.- .+
T Consensus 100 yFP~l~g~---tL~g~~~~~~~~l~gk-vSlV~l~s~~~ge~~~---~sw~~p~~~~~~~~~~~~~q~v~In~~e~~-~k 171 (252)
T PF05176_consen 100 YFPNLQGK---TLAGNKVDTTDLLRGK-VSLVCLFSSAWGEEMV---DSWTSPFLEDFLQEPYGRVQIVEINLIENW-LK 171 (252)
T ss_pred cCCCCccc---cCCCCCcccccccCCc-eEEEEEeehHHHHHHH---HHHhhHHHHHHhhCCCCceEEEEEecchHH-HH
Confidence 46889887 56777888865 5676 5665555345443333 22222 33333 333 6899999886532 24
Q ss_pred HHHHHh-----hhcCCCC-CCcceEEEcC--ccHHHHHhCCccCCCC
Q 028461 158 AWVQTD-----RKSGGLG-DLKYPLIADI--TKSISKSYGVLIPDQV 196 (208)
Q Consensus 158 ~~~~~~-----~~~~~~~-~~~f~~l~D~--~~~v~~~~gV~~~~~g 196 (208)
+|+-.. ++.-... ...|-++.+. ...+-+.+|+.....|
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~G 218 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVG 218 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcC
Confidence 444332 1111111 2233344433 4688899998655544
No 214
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=66.97 E-value=18 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=32.5
Q ss_pred eEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC
Q 028461 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 99 ~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~ 150 (208)
.-..++|.+...-|+-|+ + |+.|. -..+..+.+++++.|+++|.++.
T Consensus 27 ~g~F~~y~~~~~elvgf~--~-CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFF--T-CGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred cCccccCCCCCeEEEEEe--e-CCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 335667766335566665 3 77777 66677777888888999988864
No 215
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=66.20 E-value=14 Score=29.94 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE-eCCChhhHHHHHHHh
Q 028461 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV-STDSVFSHLAWVQTD 163 (208)
Q Consensus 111 vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V-s~d~~~~~~~~~~~~ 163 (208)
-+.+|.- +-|+.|...+..+.. .+..+.|+.| |-.+....+.|...+
T Consensus 111 rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 111 RLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred eEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 4666664 779999988777733 3556888888 566778999999998
No 216
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=63.92 E-value=14 Score=30.89 Aligned_cols=37 Identities=5% Similarity=-0.036 Sum_probs=24.7
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V 148 (208)
++ .+|.+|. -..||+|++....+.++.+. .+++|..+
T Consensus 117 ak-~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~i 153 (251)
T PRK11657 117 AP-RIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHI 153 (251)
T ss_pred CC-eEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEE
Confidence 44 6787887 55599999988887765432 23655444
No 217
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=63.87 E-value=16 Score=23.54 Aligned_cols=52 Identities=8% Similarity=-0.071 Sum_probs=26.7
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
...|||.|....-.|.+. +..++++-|...+ ....+ .+.. . .-.+|++.+.+
T Consensus 5 ~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~--~~~~~-~~~n---p--~~~vP~L~~~~ 56 (71)
T cd03060 5 SFRRCPYAMRARMALLLA-----GITVELREVELKN--KPAEM-LAAS---P--KGTVPVLVLGN 56 (71)
T ss_pred ecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCC--CCHHH-HHHC---C--CCCCCEEEECC
Confidence 367899998765555432 2234455444322 22233 3331 2 23678887653
No 218
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.05 E-value=12 Score=30.97 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=52.7
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC-hhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHh
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 188 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~ 188 (208)
+=||.|+ +.|.|-|....|-+.++..+|...++.+=-|.+.- +++..+|.-.. ..+-..++-.++.....++++.=
T Consensus 146 ~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~--s~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 146 YWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISL--SPGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred EEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeecc--CcccccCCeEEEEccchhhhcCc
Confidence 5578888 99999999999999999999987777665554432 22333333222 11222455555555567788877
Q ss_pred CCccC
Q 028461 189 GVLIP 193 (208)
Q Consensus 189 gV~~~ 193 (208)
.|+.+
T Consensus 223 ~vd~~ 227 (265)
T KOG0914|consen 223 DVDVK 227 (265)
T ss_pred ccccc
Confidence 77544
No 219
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=59.01 E-value=31 Score=31.70 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=30.4
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.-+..|+ ...||+|+.....++++..+.. ++..-.| +.....++.+++
T Consensus 118 ~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i---d~~~~~~~~~~~ 165 (517)
T PRK15317 118 FHFETYV-SLSCHNCPDVVQALNLMAVLNP--NITHTMI---DGALFQDEVEAR 165 (517)
T ss_pred eEEEEEE-cCCCCCcHHHHHHHHHHHHhCC--CceEEEE---EchhCHhHHHhc
Confidence 5577887 6779999988888877765433 5554444 222344455555
No 220
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=57.74 E-value=30 Score=22.73 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=25.9
Q ss_pred CCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHH
Q 028461 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAF 131 (208)
Q Consensus 95 ~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l 131 (208)
.+|..+.+-++.+. .+.|-|- |+ |..|....-.+
T Consensus 14 ~dGGdv~lv~v~~~-~V~V~l~-Ga-C~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVDDG-VVYVRLT-GA-CSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEETT-EEEEEEE-SS-CCSSCCHHHHH
T ss_pred hcCCcEEEEEecCC-EEEEEEE-eC-CCCCCCHHHHH
Confidence 46778999999887 6778886 88 88997655555
No 221
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=57.60 E-value=20 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhh
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEK 140 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~ 140 (208)
|| +.| +|....|||.|-.+-=.|......|.+
T Consensus 58 Gk-~~v-~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 58 GK-PEV-IFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred Ce-eEE-EEEecccCccchhhHHHHHHHHHhcCC
Confidence 55 444 444489999999886666666666654
No 222
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=56.49 E-value=3 Score=34.59 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=29.7
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEE--EEeCCC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEIL--GVSTDS 152 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi--~Vs~d~ 152 (208)
.|. +++ .|+ +.|||.|..-.+.+.....--.+.+++|- -|++|+
T Consensus 39 ~ge-wmi-~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np 84 (248)
T KOG0913|consen 39 TGE-WMI-EFG-APWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP 84 (248)
T ss_pred chH-HHH-Hhc-CCCCccccchHHHHhccCCccCCCceeEEEEEEEecc
Confidence 454 544 455 89999999999999887765556665543 334444
No 223
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=53.22 E-value=1.2e+02 Score=27.99 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=52.0
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
..+|+.+|+..+. +..|....+.++.|..++||.|.. . |..... +.. .+.....+..++.+......
T Consensus 411 ~~~G~~~p~~~~~---~~~~~~~~~d~~~~~~~~ll~~~~-~--~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~--- 477 (538)
T PRK06183 411 SPVGTLFPQPRVE---LGGGDRGLLDDVLGPGFAVLGWGC-D--PLAGLS-DEQ---RARWRALGARFVQVVPAVQA--- 477 (538)
T ss_pred CCcccCcCCCeeE---cCCCCcccchhccCCceEEEEecC-C--chhcCC-HHH---HHHHHHcCCeEEEEeccccc---
Confidence 5689999999886 444444556778888788988741 1 221111 111 12234456777766433211
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
.+ -+...+.|.++.+.+.|+..
T Consensus 478 ~~------------~~~~~~~d~~g~~~~~~~~~ 499 (538)
T PRK06183 478 HT------------AQDDHDSDVDGALRAWLARH 499 (538)
T ss_pred cc------------CCCceeecCCchHHHHHHhC
Confidence 00 13456778888888888864
No 224
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=53.03 E-value=53 Score=21.47 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=27.8
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh-hHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF-SHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
+|...+||.|....-.|.+ +|+.+--+.++..+ ...++.+.. + .-.+|++.|.
T Consensus 4 Ly~~~~sp~~~kv~~~L~~-------~gi~y~~~~v~~~~~~~~~~~~~~----p--~~~vP~l~~~ 57 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE-------LELDVILYPCPKGSPKRDKFLEKG----G--KVQVPYLVDP 57 (77)
T ss_pred EecCCCCchHHHHHHHHHH-------cCCcEEEEECCCChHHHHHHHHhC----C--CCcccEEEeC
Confidence 3435789999866555543 35544334444322 233444332 2 2357888764
No 225
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=52.72 E-value=58 Score=30.96 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=32.9
Q ss_pred CCCCCCCCCeEEeeecCCCCceEeccccc--CCcEEEEEEEcCC-CCCCChhhHHHHHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYI--GKKYVILFFYPLD-FTFVCPTEITAFSD 133 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~--gk~~vlL~f~~~t-~Cp~C~~~~~~l~~ 133 (208)
+.+|..+|++.+... .+++++.|.+.. +.++.||+|- ++ -.+.....+..+.+
T Consensus 463 ~~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~~~l~~f~-~~~~~~~~~~~l~~~~~ 518 (634)
T PRK08294 463 FPIGKRFHSAPVIRL--ADAKPVHLGHAATADGRWRIYAFA-DAADPAGPGSALDALCE 518 (634)
T ss_pred CCCceeCCCCceeec--cCCCchhHhhhcccCCCEEEEEEc-CCCCcchhHHHHHHHHH
Confidence 789999999998743 456677776432 2349999886 43 22333343444433
No 226
>PHA03075 glutaredoxin-like protein; Provisional
Probab=52.26 E-value=11 Score=27.93 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=26.1
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEE
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~ 147 (208)
.++|.|. -..|+.|......|+++.++|.=..+.|+.
T Consensus 3 ~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlS 39 (123)
T PHA03075 3 KTLILFG-KPLCSVCESISEALKELEDEYDILRVNILS 39 (123)
T ss_pred ceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeee
Confidence 4677776 788999998888887777776533344443
No 227
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=52.04 E-value=34 Score=28.86 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=32.7
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+||+.|| -..++.|......|..++.+|.. +.|+-|..+.
T Consensus 147 ~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~ 187 (265)
T PF02114_consen 147 TWVVVHIY-EPGFPRCEIMNSCLECLARKYPE--VKFVKIRASK 187 (265)
T ss_dssp -EEEEEEE--TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECG
T ss_pred cEEEEEEE-eCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhc
Confidence 48999999 67799999999999999999984 8888876543
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=51.87 E-value=54 Score=27.74 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=54.9
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC-----ccHH
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI-----TKSI 184 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~-----~~~v 184 (208)
.|||..-+|+. --.-.+.++.+|.++|+.+|=|+-++.......++.++.. ...|.+++|. +..-
T Consensus 87 nVLLwGaRGtG------KSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~----~~kFIlFcDDLSFe~gd~~ 156 (287)
T COG2607 87 NVLLWGARGTG------KSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR----PEKFILFCDDLSFEEGDDA 156 (287)
T ss_pred ceEEecCCCCC------hHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC----CceEEEEecCCCCCCCchH
Confidence 46665544441 1223455788899999999999988888888888877422 4568888875 2455
Q ss_pred HHHhCCccCCCCcccceEEEEEeC
Q 028461 185 SKSYGVLIPDQVKKSLLIFTWFLT 208 (208)
Q Consensus 185 ~~~~gV~~~~~g~~~r~~fvv~~~ 208 (208)
.|.+....+..--..+.=.++|.|
T Consensus 157 yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 157 YKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHHHHHHhcCCcccCCCeEEEEEe
Confidence 566665544322233344444543
No 229
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=20 Score=29.51 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.7
Q ss_pred cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 106 IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 106 ~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+++ ..++.|| +.||.+|......+..+.+.+ ++++++-+..+.
T Consensus 16 ~~~-~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGK-LLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccc-hhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 555 7899999 999999998877777777666 466776665543
No 230
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=50.77 E-value=78 Score=24.23 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
..=|++.++++++.|..=+.|++++.+...+..+-. ...+++=....++++.+|+
T Consensus 75 ~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la--------pgl~l~P~sgddLA~rL~l 129 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA--------PGLPLLPVSGDDLARRLGL 129 (142)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------CCCeecCCCHHHHHHHhCC
Confidence 444666777777777777778999987776654432 2344444445688888886
No 231
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=50.67 E-value=21 Score=25.58 Aligned_cols=42 Identities=7% Similarity=-0.008 Sum_probs=27.4
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--C--ChhhHHHHHHHh
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~ 163 (208)
+|...+|+.|+....-|.+ .|+.+-.+.+ + +.+..++|.+..
T Consensus 3 iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 4447889999987665543 3665555544 3 347778888765
No 232
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=49.31 E-value=25 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=40.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
|---|.+.-.....+++.+++..+. ||||..-+.+....|.++. +|.++.|.+
T Consensus 89 GLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~~I---------~FD~iID~~ 141 (147)
T PF09897_consen 89 GLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDDKI---------DFDYIIDAD 141 (147)
T ss_dssp GGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHHHS-----------SEEEEEE
T ss_pred ccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCcccc---------CccEEEeee
Confidence 5557888888888888888887643 9999999999999999976 677777754
No 233
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.40 E-value=44 Score=21.09 Aligned_cols=16 Identities=0% Similarity=-0.330 Sum_probs=11.7
Q ss_pred CCCCCCChhhHHHHHH
Q 028461 118 LDFTFVCPTEITAFSD 133 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~ 133 (208)
..+||.|....-.|..
T Consensus 6 ~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 6 SPTAPNPRRVRIFLAE 21 (74)
T ss_pred CCCCcchHHHHHHHHH
Confidence 5779999877666544
No 234
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=47.79 E-value=1.3e+02 Score=23.31 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCCeEEeeecCCCCceEecccc---cCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHH
Q 028461 81 GNTAPDFAAEAVFDQEFINVKLSDY---IGKKYVILFFYPLDFTFVCPTEITAFSDRYTEF 138 (208)
Q Consensus 81 G~~~P~f~l~~~~~~~g~~v~Lsd~---~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~ 138 (208)
|..+|++.+... .+++++.|.+. .|+ +=|++|- ++- .+..+...+.++.+.+
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGr-frI~vFa-gd~--~~~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGR-FRIYVFA-GDI--APAQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCC-EEEEEEc-CCC--CchhHHHHHHHHHHHH
Confidence 677888888754 46778888664 354 8888886 542 2344455666655555
No 235
>PRK12359 flavodoxin FldB; Provisional
Probab=47.46 E-value=55 Score=25.69 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhCCeEEE
Q 028461 129 TAFSDRYTEFEKLNTEIL 146 (208)
Q Consensus 129 ~~l~~~~~~~~~~gv~vi 146 (208)
..+..+++.++++|.++|
T Consensus 99 ~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 99 DALGMLHDKLAPKGVKFV 116 (172)
T ss_pred HHHHHHHHHHHhCCCeEE
Confidence 333444444444444433
No 236
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.19 E-value=89 Score=22.64 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
..=|++.++++++.+..=+.|++++.....+..+-. ...++.-....++++.+|+
T Consensus 37 ~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la--------pgl~l~P~sgddLa~rL~l 91 (105)
T TIGR03765 37 RQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA--------PGLPLLPVSGDDLAERLGL 91 (105)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------CCCcccCCCHHHHHHHhCC
Confidence 444667777888777777778999877666644332 2344444445678888776
No 237
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=46.32 E-value=1.2e+02 Score=22.52 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=46.8
Q ss_pred EEEEEcCCCC--CCC----hhhHHHHHHHHHHHhhCCeEEEEEeCCC---hh----hHHHHHHHhhhcCCCCCCcceEEE
Q 028461 112 ILFFYPLDFT--FVC----PTEITAFSDRYTEFEKLNTEILGVSTDS---VF----SHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 112 lL~f~~~t~C--p~C----~~~~~~l~~~~~~~~~~gv~vi~Vs~d~---~~----~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
|-.|=|+=+| .+| ..++.++....+.++++|++|.-.+... .| ...+.+++. |...+|..++-
T Consensus 4 i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~----G~e~LPitlVd 79 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE----GAEALPITLVD 79 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-----GGG-SEEEET
T ss_pred eEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc----CcccCCEEEEC
Confidence 4455567666 366 3678888889999999999988887743 12 345555555 54456665554
Q ss_pred cC---------ccHHHHHhCCccCC
Q 028461 179 DI---------TKSISKSYGVLIPD 194 (208)
Q Consensus 179 D~---------~~~v~~~~gV~~~~ 194 (208)
+. ..++++..|+..+.
T Consensus 80 Geiv~~G~YPt~eEl~~~~~i~~~~ 104 (123)
T PF06953_consen 80 GEIVKTGRYPTNEELAEWLGISFSE 104 (123)
T ss_dssp TEEEEESS---HHHHHHHHT--GGG
T ss_pred CEEEEecCCCCHHHHHHHhCCCccc
Confidence 32 37888888886554
No 238
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=45.69 E-value=59 Score=29.91 Aligned_cols=48 Identities=10% Similarity=-0.087 Sum_probs=29.1
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.-+..|+ ...||+|+.....++++..+.. ++..-.| +.....++.+++
T Consensus 119 ~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i---d~~~~~~~~~~~ 166 (515)
T TIGR03140 119 LHFETYV-SLTCQNCPDVVQALNQMALLNP--NISHTMI---DGALFQDEVEAL 166 (515)
T ss_pred eEEEEEE-eCCCCCCHHHHHHHHHHHHhCC--CceEEEE---EchhCHHHHHhc
Confidence 5677887 5669999987777777665533 4443332 222344455555
No 239
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=45.36 E-value=78 Score=29.21 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=50.7
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHH
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~ 157 (208)
..+|..+|+..+. .+|+.+++.|+.|.+++||.|-... . . ....+.. +....++.++.+..+...
T Consensus 427 ~~pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~~~~--~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~--- 491 (547)
T PRK08132 427 PVPGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFGDDA--A---A--AALLQAL-AAAALPVRVVAVVPAGAA--- 491 (547)
T ss_pred CCCCCCCCCCccc----CCCCceEHHHhcCCCEEEEEecCCc--h---h--hhhhhhh-hccCCceEEEEEecCccc---
Confidence 5789999998874 3456788989888878888875211 0 0 1111111 122334555555433211
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCCc
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 191 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV~ 191 (208)
..+...+.|.++.+.+.||+.
T Consensus 492 -------------~~~~~~~~d~~~~~~~~~~~~ 512 (547)
T PRK08132 492 -------------QAAAGVLEDADGLAAERYDAR 512 (547)
T ss_pred -------------ccCcccccCcccHHHHHhCCC
Confidence 012235678888899998884
No 240
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=45.31 E-value=62 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
|.+|+ ---||.|-...+.|.++.+++.+-.++..-+....
T Consensus 2 i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 55666 45599999999999999999854334444455444
No 241
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=44.02 E-value=82 Score=26.44 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 131 l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
++.+..+|.++|+.+|-|.-++-.....-.+..+. ....|.+++|.
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~----~~~kFIlf~DD 114 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD----RPYKFILFCDD 114 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc----CCCCEEEEecC
Confidence 44477888899999999988876666666666531 15678888885
No 242
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=43.66 E-value=90 Score=23.57 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=35.4
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHH
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLA 158 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~ 158 (208)
+.+||-|. -.|-|.|.+.-..|.+..+...+ =.+|.-|.+|+..+..+
T Consensus 24 rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV~~~~~ 71 (142)
T KOG3414|consen 24 RLVVIRFG-RDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEVPDFVK 71 (142)
T ss_pred eEEEEEec-CCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchhhhhhh
Confidence 48889997 79999999998888888888774 23555667775443333
No 243
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=43.43 E-value=1.3e+02 Score=22.18 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=34.4
Q ss_pred cEEEEEEEcCC--CCCCCh-hhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 109 KYVILFFYPLD--FTFVCP-TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 109 ~~vlL~f~~~t--~Cp~C~-~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
..=+|.|.|.. ..+-+. .....|.++.++|+++.+.++.+..+.... +.+..
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~---~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD---LEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH---HHHHc
Confidence 46688887642 233444 347778889999998778888887766333 55554
No 244
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=43.25 E-value=39 Score=28.15 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=32.0
Q ss_pred HHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 133 DRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 133 ~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.++.++++.|+.||.+|.-...++..+.+++ +++ +-|+++...
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l----~v~--~~p~iaEnG 72 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSL----GVQ--GLPLIAENG 72 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhc----CCC--CCceeecCC
Confidence 3556677889999999999988888888887 332 267777543
No 245
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=42.99 E-value=1.6e+02 Score=23.95 Aligned_cols=41 Identities=7% Similarity=-0.038 Sum_probs=26.0
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+++..| ++.. ......|...+..++++++|..+..++..+
T Consensus 10 ~~~~D~d-G~l~-~~~~~~pga~e~L~~L~~~G~~~~ivTN~~ 50 (242)
T TIGR01459 10 VFLLDLW-GVII-DGNHTYPGAVQNLNKIIAQGKPVYFVSNSP 50 (242)
T ss_pred EEEEecc-cccc-cCCccCccHHHHHHHHHHCCCEEEEEeCCC
Confidence 3555555 4422 123347778888888888888888776544
No 246
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=42.13 E-value=1.5e+02 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+-+|||+|-|.-.-++.-+++-..-|.+ .+|+|..|+
T Consensus 4 iavypGSFDPiTnGHlDii~RA~~~Fd~---viVaV~~np 40 (159)
T COG0669 4 IAVYPGSFDPITNGHLDIIKRASALFDE---VIVAVAINP 40 (159)
T ss_pred eEEeCCCCCCCccchHHHHHHHHHhccE---EEEEEEeCC
Confidence 4567999999999999999888877764 566776655
No 247
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=41.66 E-value=83 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 132 ~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
+++.+.|++.|.+|+.||..+.+...++.+..+ + ...++..+.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~------~-k~~vl~G~S 44 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLK------G-KTSVLLGQS 44 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT------T-SEEEEECST
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc------C-CEEEEECCC
Confidence 456778888899999999988778888777762 2 566666554
No 248
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=41.47 E-value=72 Score=27.09 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCCCCeEEeeecCCCCceEecccccC-CcEEEEEEEcCCCCCCChhhHHHH-HHHHHHHh--hCCeEEEEEeCCChhhHH
Q 028461 82 NTAPDFAAEAVFDQEFINVKLSDYIG-KKYVILFFYPLDFTFVCPTEITAF-SDRYTEFE--KLNTEILGVSTDSVFSHL 157 (208)
Q Consensus 82 ~~~P~f~l~~~~~~~g~~v~Lsd~~g-k~~vlL~f~~~t~Cp~C~~~~~~l-~~~~~~~~--~~gv~vi~Vs~d~~~~~~ 157 (208)
+.+|-|.+. |.+|.++-.++-.+ .+.+.++|. |..+...+ .++..+-. ..+++|+.|+.+....+.
T Consensus 73 ~~VPVF~it---n~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~ 142 (274)
T PF04278_consen 73 AGVPVFTIT---NSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLA 142 (274)
T ss_dssp TTSEEEEEE----TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHH
T ss_pred cCceEEEEE---CCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHH
Confidence 456889987 89999987766552 224555543 34443333 33332221 457999999998755442
Q ss_pred HHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 158 AWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 158 ~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
. +... ...++.|.++-|.. ++..+..+
T Consensus 143 ~--~~~~---k~~~~~F~~vP~~~-qV~~A~~l 169 (274)
T PF04278_consen 143 Q--ENKK---KPEGLQFRFVPDPK-QVEAALEL 169 (274)
T ss_dssp H--HTTT----TT-EEEEEE--HH-HHHHHHHH
T ss_pred H--Hhhc---CCcCceEEEcCCHH-HHHHHHHH
Confidence 2 1111 12367899998864 55555554
No 249
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=41.16 E-value=23 Score=22.61 Aligned_cols=52 Identities=8% Similarity=-0.034 Sum_probs=26.4
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 117 PLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 117 ~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
...+||.|....-.+. .+|+.+--+.+|.......+.+ .. ..+ .+|++-|.+
T Consensus 5 ~~~~~~~~~~v~~~l~-------~~gi~~~~~~v~~~~~~~~~~~-~~---p~~--~vP~l~~~~ 56 (73)
T cd03059 5 SGPDDVYSHRVRIVLA-------EKGVSVEIIDVDPDNPPEDLAE-LN---PYG--TVPTLVDRD 56 (73)
T ss_pred ECCCChhHHHHHHHHH-------HcCCccEEEEcCCCCCCHHHHh-hC---CCC--CCCEEEECC
Confidence 3677999987655543 3455544444443222223333 31 222 567776654
No 250
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=39.78 E-value=94 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=29.2
Q ss_pred CCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEE
Q 028461 107 GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (208)
Q Consensus 107 gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~ 147 (208)
.|..+|+.|. |+|.|+=..++.......+.+.-.++.+|.
T Consensus 19 ~~~~~v~i~G-GSFdP~H~gHl~ia~~a~~~l~~d~~~~v~ 58 (236)
T PLN02945 19 PRTRVVLVAT-GSFNPPTYMHLRMFELARDALMSEGYHVLG 58 (236)
T ss_pred CCceEEEEEc-CCCCCCcHHHHHHHHHHHHHHhhcCcEEEE
Confidence 3434566665 999999998888877777777766776664
No 251
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=38.49 E-value=1.7e+02 Score=25.78 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=41.3
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.++.+.-. +.++. ..+..-.+...++.+.|.++|=|++.+.+..++..+-.+ ..+.|++.|-.
T Consensus 18 ~PI~VQSM--tnt~T--~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~------~~~iPlVADIH 80 (346)
T TIGR00612 18 APIVVQSM--TNTDT--IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE------GTNVPLVADIH 80 (346)
T ss_pred CcEEEEec--CCCCc--hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh------CCCCCEEEeeC
Confidence 46666654 32332 233333334455667799999999999887777655442 57899999975
No 252
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=37.71 E-value=41 Score=21.99 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=26.9
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
...|+.|....-.+.+ ++..++++.|.....+....|..+... .-.+|++.|.+
T Consensus 6 ~~~s~~s~rv~~~L~e-----~gl~~e~~~v~~~~~~~~~~~~~~inP-----~g~vP~L~~~g 59 (73)
T cd03052 6 WTQSFSSQKVRLVIAE-----KGLRCEEYDVSLPLSEHNEPWFMRLNP-----TGEVPVLIHGD 59 (73)
T ss_pred CCCCccHHHHHHHHHH-----cCCCCEEEEecCCcCccCCHHHHHhCc-----CCCCCEEEECC
Confidence 4557777555433322 122345666655433334445555522 22577777754
No 253
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=37.30 E-value=1.1e+02 Score=19.37 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=15.5
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
..+||.|....-.|. .+|+.+--+.++
T Consensus 6 ~~~~p~~~rvr~~L~-------~~gl~~~~~~~~ 32 (71)
T cd03037 6 YEHCPFCVKARMIAG-------LKNIPVEQIILQ 32 (71)
T ss_pred cCCCcHhHHHHHHHH-------HcCCCeEEEECC
Confidence 477999985544443 345554444444
No 254
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=28 Score=27.88 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCcc-HHHHHhCC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK-SISKSYGV 190 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~-~v~~~~gV 190 (208)
|+.| ++||+|.+..-. --+++-.+++...-.||.+.-.+.+-+ -..|++.-++| .+.+.+++
T Consensus 3 LYIY--dHCPfcvrarmi-----~Gl~nipve~~vL~nDDe~Tp~rmiG~---------KqVPiL~Kedg~~m~ESlDI 65 (215)
T COG2999 3 LYIY--DHCPFCVRARMI-----FGLKNIPVELHVLLNDDEETPIRMIGQ---------KQVPILQKEDGRAMPESLDI 65 (215)
T ss_pred eeEe--ccChHHHHHHHH-----hhccCCChhhheeccCcccChhhhhcc---------cccceEEccccccchhhhHH
Confidence 4554 899999754221 122333456665666665555554433 25677665553 33444444
No 255
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=37.19 E-value=1.3e+02 Score=29.00 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCC---ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhC
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTD---SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYG 189 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d---~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~g 189 (208)
.....++|.+.++.|.+++.++.- -.+..+.|++...+.+.. -..=|++-.+++-|+-.+.
T Consensus 560 h~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~-LPdGPViLSPd~lf~Al~R 623 (738)
T KOG2116|consen 560 HTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKK-LPDGPVILSPDSLFAALHR 623 (738)
T ss_pred hhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCcc-CCCCCEEeCCCcchHHHHH
Confidence 345678889999999999999763 456778888887666543 3457788888876665443
No 256
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=36.66 E-value=31 Score=22.10 Aligned_cols=54 Identities=11% Similarity=-0.074 Sum_probs=25.9
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..+||.|+...-.|.+. +..++++-|..........+..+.. .. -.+|++.|.+
T Consensus 6 ~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~---p~--~~vP~l~~~~ 59 (74)
T cd03045 6 LPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLN---PQ--HTVPTLVDNG 59 (74)
T ss_pred CCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhC---cC--CCCCEEEECC
Confidence 56799998555444332 2223454444323222223333331 11 2577777654
No 257
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.41 E-value=1.9e+02 Score=22.73 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=26.6
Q ss_pred ccCCcEEEEEEEcCCCCCCChhhHHHH---HHHHHHHhhCCeEEEEEeC
Q 028461 105 YIGKKYVILFFYPLDFTFVCPTEITAF---SDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 105 ~~gk~~vlL~f~~~t~Cp~C~~~~~~l---~~~~~~~~~~gv~vi~Vs~ 150 (208)
-.+| +.+|.|- ...|+.|...-..+ .++.+.++ .++.++-+..
T Consensus 40 ~~~K-ylllmfe-s~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i 85 (182)
T COG2143 40 PNDK-YLLLMFE-SNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNI 85 (182)
T ss_pred ccCc-EEEEEEc-CCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEe
Confidence 3455 8899987 66699997554443 33433344 3566666654
No 258
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=35.97 E-value=1.1e+02 Score=28.97 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCCCCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHH-HhhCCeEEEEEeCCC
Q 028461 78 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTE-FEKLNTEILGVSTDS 152 (208)
Q Consensus 78 ~~vG~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~-~~~~gv~vi~Vs~d~ 152 (208)
-..|.++-...++ |.+.....-.-++++....|+++-++.-=.-+..+|.|-.++.. .-.+++.|||+.-.+
T Consensus 59 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 59 SSNGHPLNAVSLQ---DGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred cCCCCcccceecc---cccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 3467777777776 44322222233455544444444366555567889999998754 223589999997654
No 259
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=35.86 E-value=1.2e+02 Score=22.52 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCCh---h------------hHHHHHHHh
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDSV---F------------SHLAWVQTD 163 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~~---~------------~~~~~~~~~ 163 (208)
.+...+..++++++|..|+.+|--+. . ...+|++++
T Consensus 26 ~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~ 76 (126)
T TIGR01689 26 ILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH 76 (126)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence 34555556666677999988875432 2 568899988
No 260
>PHA00649 hypothetical protein
Probab=35.72 E-value=17 Score=24.29 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=17.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHh
Q 028461 142 NTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 142 gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
-+.+++|.+|+|+..+.|.++.
T Consensus 22 ~~~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 22 VFAILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 3567789999999888877765
No 261
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=35.41 E-value=61 Score=29.61 Aligned_cols=65 Identities=11% Similarity=-0.039 Sum_probs=46.2
Q ss_pred CCCCCCeEEeeecCCCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 81 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 81 G~~~P~f~l~~~~~~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
+..+-...+. -.+++.|.|.+++|..-+||.- |+ -..|...+...+...+++.++||-||-|..+
T Consensus 273 ee~L~rL~v~---l~~~~~v~l~~LRg~~RvvIvA--G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 273 DETLSRLPVR---LSTNRIVELVQLRDITRPVILA--GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred hhhhccceEe---ccCCCEEeHHHhcCcceEEEEE--CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 3444444443 2356789999999984455543 44 3567788888888899999999999988664
No 262
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.80 E-value=88 Score=23.89 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCChhh-------HHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 113 LFFYPLDFTFVCPTE-------ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~-------~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
+.|- .+.|.+|... -.+++++.++|...|+.|| +...+++...-..++.
T Consensus 33 vvfs-~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVv-lG~aeaE~a~laAETV 88 (150)
T PF04723_consen 33 VVFS-STECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVV-LGAAEAEAAGLAAETV 88 (150)
T ss_pred EEEE-eeeEEEecccccccHHHHHHHHHHHHhcCCccEEEE-ecCCChhhhhhhhhhh
Confidence 4454 7889999732 3567777777876665544 3333444444344443
No 263
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=34.12 E-value=1.2e+02 Score=22.96 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=33.4
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChh
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVF 154 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~ 154 (208)
+.+||-|. -+|-|.|.+.-.-|.+..++.++ -..|+.|.++...
T Consensus 21 rvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vp 64 (133)
T PF02966_consen 21 RVVVIRFG-RDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVP 64 (133)
T ss_dssp SEEEEEEE--TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTH
T ss_pred eEEEEEeC-CCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccch
Confidence 48899998 78899999888888888887764 3456677777543
No 264
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=33.93 E-value=2e+02 Score=22.56 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=29.7
Q ss_pred eEecccccCCcEEEEEEEcCCCCC-------CChhhHHHHHHHHHHHhhCCeEEEEEeC
Q 028461 99 NVKLSDYIGKKYVILFFYPLDFTF-------VCPTEITAFSDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 99 ~v~Lsd~~gk~~vlL~f~~~t~Cp-------~C~~~~~~l~~~~~~~~~~gv~vi~Vs~ 150 (208)
++.+.+++|=+.+||. -+.|- .-..+++.+.+....|.++++-+++=|.
T Consensus 34 p~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsa 89 (190)
T KOG2961|consen 34 PWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSA 89 (190)
T ss_pred CcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCc
Confidence 5666776664445543 34442 3345667777777777777777665443
No 265
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=33.92 E-value=96 Score=23.34 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=44.7
Q ss_pred ecccccCCcEEEEEEEcCC--CCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEE
Q 028461 101 KLSDYIGKKYVILFFYPLD--FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIA 178 (208)
Q Consensus 101 ~Lsd~~gk~~vlL~f~~~t--~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~ 178 (208)
++.++.+.....+.|.+++ -+|-+....--|.++.++|.+..+.++-|.+|.. .+..+++ ++..++--++.
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~---~~LA~~f----gV~siPTLl~F 98 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS---EAIGDRF----GVFRFPATLVF 98 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC---HHHHHHc----CCccCCEEEEE
Confidence 4455543322333333454 2455566667788888888654588888888763 3344444 55455544444
Q ss_pred cCccHHHHHhCC
Q 028461 179 DITKSISKSYGV 190 (208)
Q Consensus 179 D~~~~v~~~~gV 190 (208)
...+.+.+.-|+
T Consensus 99 kdGk~v~~i~G~ 110 (132)
T PRK11509 99 TGGNYRGVLNGI 110 (132)
T ss_pred ECCEEEEEEeCc
Confidence 433333333343
No 266
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=33.46 E-value=1.3e+02 Score=20.93 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.8
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
++.|.+-|..-|..-....-+|.-++..+++.|.+|+-.-+++
T Consensus 6 ~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d 48 (88)
T PF15092_consen 6 YVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIED 48 (88)
T ss_pred EEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 6778887878788866667888889999999999988877665
No 267
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=32.93 E-value=78 Score=21.92 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
...+.+.+..+++++.|+.++.||-......+.|.+..
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~ 61 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL 61 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc
Confidence 44566777778888889999989988877888888776
No 268
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=1.2e+02 Score=21.38 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=24.5
Q ss_pred CCCceEecccccCC-cEEEEEEEcCCCCCCChhhHHHHHH
Q 028461 95 QEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSD 133 (208)
Q Consensus 95 ~~g~~v~Lsd~~gk-~~vlL~f~~~t~Cp~C~~~~~~l~~ 133 (208)
.+|..+.+-++... ..|.|.|- |+ |..|....--|+.
T Consensus 28 ~dGGdve~~~i~~~~g~V~l~l~-Ga-C~gC~sS~~TLk~ 65 (93)
T COG0694 28 MDGGDVELVGIDEEDGVVYLRLG-GA-CSGCPSSTVTLKN 65 (93)
T ss_pred ccCCeEEEEEEecCCCeEEEEeC-Cc-CCCCcccHHHHHH
Confidence 45667888887742 36677675 88 9999765444444
No 269
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=32.59 E-value=54 Score=24.04 Aligned_cols=59 Identities=5% Similarity=-0.055 Sum_probs=40.2
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEE--EEEeCC--ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEI--LGVSTD--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~v--i~Vs~d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
-.-|..|+....-|. +.|+++ +-+..+ +.+...+|+++. +.+|.-+....+...+.+|+
T Consensus 8 ~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~~~s~~eL~~~l~~~-------g~~~~~li~t~~~~~r~L~~ 70 (117)
T COG1393 8 NPNCSTCRKALAWLE-------EHGIEYTFIDYLKTPPSREELKKILSKL-------GDGVEELINTRGTTYRELNL 70 (117)
T ss_pred CCCChHHHHHHHHHH-------HcCCCcEEEEeecCCCCHHHHHHHHHHc-------CccHHHHHHhccchHHHcCC
Confidence 455777776655443 446654 434433 357889999988 66688888788888898884
No 270
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.91 E-value=1e+02 Score=21.66 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=34.4
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+.+||.+- ..+..-..-+..|.+++++++.+|++++.+++++
T Consensus 49 ~~vIlD~s--~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 49 KNVILDMS--GVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp SEEEEEET--TESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred eEEEEEEE--eCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 37888883 5466677889999999999999999999888755
No 271
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=31.88 E-value=2.3e+02 Score=21.69 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 132 SDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 132 ~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.++.+++++.|+.++.|...........++++.+.. +=.|..+.|.+
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~t---gG~~~~~~d~~ 168 (178)
T cd01451 122 LAAARKLRARGISALVIDTEGRPVRRGLAKDLARAL---GGQYVRLPDLS 168 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHc---CCeEEEcCcCC
Confidence 556677788899999887765333333444444333 23455666655
No 272
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=31.17 E-value=2.6e+02 Score=24.86 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=40.2
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.++++.-. +.++.. ....-.+...++.+.|.++|=|++.+.+..++..+-.+ ..+.|++.|-.
T Consensus 26 ~Pi~VQSM--t~t~T~--Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~------~~~iPlvADIH 88 (360)
T PRK00366 26 APIVVQSM--TNTDTA--DVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKK------QLPVPLVADIH 88 (360)
T ss_pred CcEEEEec--CCCCch--hHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHH------cCCCCEEEecC
Confidence 46666654 324333 23333333445567799999999999877777555432 46899999975
No 273
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=29.78 E-value=1.5e+02 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCC--------hhhHHHHHHHh
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDS--------VFSHLAWVQTD 163 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~--------~~~~~~~~~~~ 163 (208)
.|...+..++++++|+.++.+|-.. .+...++.+..
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~ 70 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL 70 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC
Confidence 4556666677777788877776655 34445555554
No 274
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.28 E-value=76 Score=22.18 Aligned_cols=53 Identities=6% Similarity=-0.122 Sum_probs=28.8
Q ss_pred CCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHH
Q 028461 120 FTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSIS 185 (208)
Q Consensus 120 ~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~ 185 (208)
+||.|++..-.|.+ +|+.+=.+.+|... ..+|..+..+.+ .+|++.|.+..+.
T Consensus 21 ~cpf~~rvrl~L~e-------Kgi~ye~~~vd~~~-~p~~~~~~nP~g-----~vPvL~~~~~~i~ 73 (91)
T cd03061 21 NCPFCQRLFMVLWL-------KGVVFNVTTVDMKR-KPEDLKDLAPGT-----QPPFLLYNGEVKT 73 (91)
T ss_pred CChhHHHHHHHHHH-------CCCceEEEEeCCCC-CCHHHHHhCCCC-----CCCEEEECCEEec
Confidence 38999877666643 35544334343221 235666663322 4778888654433
No 275
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=28.48 E-value=74 Score=27.08 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.2
Q ss_pred cCCCCCCChhh--HHHHHHHHHHH
Q 028461 117 PLDFTFVCPTE--ITAFSDRYTEF 138 (208)
Q Consensus 117 ~~t~Cp~C~~~--~~~l~~~~~~~ 138 (208)
+..|||.|-.. +..+++..+++
T Consensus 6 ~~~~CpGCg~~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCGNYGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHh
Confidence 46899999855 66677766666
No 276
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.40 E-value=54 Score=20.67 Aligned_cols=54 Identities=7% Similarity=-0.104 Sum_probs=25.9
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
..+||.|....-.+... +...+.+-|.....+....|..+..+ .-.+|++.|.+
T Consensus 6 ~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~p-----~~~vP~l~~~~ 59 (73)
T cd03056 6 FPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFLALNP-----NGEVPVLELDG 59 (73)
T ss_pred CCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHHHhCC-----CCCCCEEEECC
Confidence 56788888654444322 22234444443222223344444421 22577777654
No 277
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=28.38 E-value=1.5e+02 Score=24.00 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCC
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTD 151 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d 151 (208)
|..|..-.|.-|+..-..|.++.++ .++-.++..||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 4444578899999888888888776 37888888874
No 278
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.30 E-value=95 Score=27.93 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCh--hhHHHHHHHHHHHhhCCeEEEEEeC
Q 028461 112 ILFFYPLDFTFVCP--TEITAFSDRYTEFEKLNTEILGVST 150 (208)
Q Consensus 112 lL~f~~~t~Cp~C~--~~~~~l~~~~~~~~~~gv~vi~Vs~ 150 (208)
..+|.+.| |.+|+ .....+.+..++..=.+|.||+++.
T Consensus 73 ~~vlmt~T-gGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 73 DAVLMTQT-GGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred cEEEEecC-CCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 34444576 99999 4466666666554334578888874
No 279
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=27.87 E-value=1e+02 Score=18.43 Aligned_cols=16 Identities=6% Similarity=-0.182 Sum_probs=10.7
Q ss_pred CCCCCCChhhHHHHHH
Q 028461 118 LDFTFVCPTEITAFSD 133 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~ 133 (208)
..+||.|......+..
T Consensus 6 ~~~~~~~~~~~~~l~~ 21 (71)
T cd00570 6 FPGSPRSLRVRLALEE 21 (71)
T ss_pred CCCCccHHHHHHHHHH
Confidence 4669999865555543
No 280
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.73 E-value=1.2e+02 Score=19.53 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=21.8
Q ss_pred CChhhHHHHHHHHHHHhhCCeEEEEEeCCC---hhhHHHHHHHh
Q 028461 123 VCPTEITAFSDRYTEFEKLNTEILGVSTDS---VFSHLAWVQTD 163 (208)
Q Consensus 123 ~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~---~~~~~~~~~~~ 163 (208)
.|+.=+-.+++..++.+. | +++-|-+|+ ..+..+|.++.
T Consensus 8 ~CP~P~i~~k~~l~~l~~-G-~~l~V~~dd~~s~~di~~~~~~~ 49 (69)
T cd03423 8 RCPEPVMMLHKKVRKMKP-G-DTLLVLATDPSTTRDIPKFCTFL 49 (69)
T ss_pred cCCHHHHHHHHHHHcCCC-C-CEEEEEeCCCchHHHHHHHHHHc
Confidence 355555555555665543 3 233333333 46778899877
No 281
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=27.62 E-value=67 Score=22.70 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEE
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGV 148 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~V 148 (208)
||-+ .||.|..+...+.+.- ....++++.+
T Consensus 2 ~YDg-~C~lC~~~~~~l~~~d---~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDG-DCPLCRREVRFLRRRD---RGGRLRFVDI 31 (114)
T ss_pred EECC-CCHhHHHHHHHHHhcC---CCCCEEEEEC
Confidence 4534 4999999998887661 1234566555
No 282
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.46 E-value=3.3e+02 Score=22.54 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=36.4
Q ss_pred EEEEEEcCCCCCCChhh----HHHHHHHHHHHh-hCCeEEEEEeCCChhhHHHHHHHhhh
Q 028461 111 VILFFYPLDFTFVCPTE----ITAFSDRYTEFE-KLNTEILGVSTDSVFSHLAWVQTDRK 165 (208)
Q Consensus 111 vlL~f~~~t~Cp~C~~~----~~~l~~~~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~ 165 (208)
-+++|--..+.|+-.+. .+.+.+..+.+. +.|++++.|..|.. +-.|.+..++
T Consensus 25 ~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA--~a~~~~~l~~ 82 (251)
T TIGR00067 25 HYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTA--SALALEDLQR 82 (251)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchH--HHHHHHHHHH
Confidence 36777666677766432 455666778888 89999999999984 4345555543
No 283
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.99 E-value=1.7e+02 Score=22.20 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEe
Q 028461 111 VILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVS 149 (208)
Q Consensus 111 vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs 149 (208)
+|+... ||--+.+++.-.=+..+++++|+.|+.-+
T Consensus 5 vlv~lG----CPeiP~qissaiYls~klkkkgf~v~Vaa 39 (148)
T COG4081 5 VLVSLG----CPEIPPQISSAIYLSHKLKKKGFDVTVAA 39 (148)
T ss_pred EEEEec----CCCCCccchHHHHHHHHhhccCccEEEec
Confidence 455544 99989898887777888999998877544
No 284
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=26.68 E-value=1.8e+02 Score=23.64 Aligned_cols=40 Identities=5% Similarity=-0.041 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 124 CPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 124 C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.....|.+.++.+++.++|+.++.++-.+....+...++.
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 3556788888888888888877777777777777766655
No 285
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.36 E-value=1.3e+02 Score=21.03 Aligned_cols=39 Identities=8% Similarity=0.108 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDR 164 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~ 164 (208)
..+|.-.+..+++++.|..++.++-++.....++.++.+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~ 52 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLK 52 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH
Confidence 346777778888888899999998887666666666653
No 286
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=26.09 E-value=2.2e+02 Score=19.45 Aligned_cols=11 Identities=18% Similarity=0.162 Sum_probs=4.8
Q ss_pred EEEEEEEcCCCC
Q 028461 110 YVILFFYPLDFT 121 (208)
Q Consensus 110 ~vlL~f~~~t~C 121 (208)
.+++.+- |.|.
T Consensus 13 ~~vi~~~-G~l~ 23 (108)
T TIGR00377 13 VVIVRLS-GELD 23 (108)
T ss_pred EEEEEEe-cccc
Confidence 3444443 5544
No 287
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=25.89 E-value=1.3e+02 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHH
Q 028461 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSD 133 (208)
Q Consensus 95 ~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~ 133 (208)
.+|..+.|-++.+.+.+.|-|- |+ |..|....--|+.
T Consensus 124 ~dGGdielv~v~~~~~v~v~l~-Ga-C~gC~~s~~Tl~~ 160 (190)
T TIGR03341 124 SHGGKVTLVEITDDGVAVLQFG-GG-CNGCSMVDVTLKD 160 (190)
T ss_pred hcCCceEEEEEcCCCEEEEEEe-ec-CCCCcchHHHHHH
Confidence 4566788888775445677776 88 8899866555543
No 288
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=25.88 E-value=80 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=16.5
Q ss_pred EEcCCCCCCChhh--HHHHHHHHHHH
Q 028461 115 FYPLDFTFVCPTE--ITAFSDRYTEF 138 (208)
Q Consensus 115 f~~~t~Cp~C~~~--~~~l~~~~~~~ 138 (208)
.+|-+|||.|-.- +..+.+...++
T Consensus 5 ~~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 5 KYDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 3578899999743 56666666554
No 289
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=24.85 E-value=2.5e+02 Score=20.24 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=24.4
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+++.|. +..+.... ...+..++++++|+.|+.|.+.+
T Consensus 105 ~~iiliT--DG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 105 KVIIVLT--DGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred eEEEEEC--CCCCCCCc---chHHHHHHHHHCCCEEEEEeccc
Confidence 3455553 44444433 45666677777899999988865
No 290
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=24.82 E-value=1.7e+02 Score=25.76 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=32.0
Q ss_pred HHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 134 RYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 134 ~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
...++...|.+||=|++++.+...++.+-.+ .++.|++.|-.
T Consensus 41 QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~------~~~vPLVaDiH 82 (361)
T COG0821 41 QIKALERAGCDIVRVTVPDMEAAEALKEIKQ------RLNVPLVADIH 82 (361)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHH------hCCCCEEEEee
Confidence 3345566799999999999888888766542 46899999975
No 291
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=24.69 E-value=1.9e+02 Score=24.73 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhhCCeEEEEEeCCChh---hHHHHHHHh
Q 028461 127 EITAFSDRYTEFEKLNTEILGVSTDSVF---SHLAWVQTD 163 (208)
Q Consensus 127 ~~~~l~~~~~~~~~~gv~vi~Vs~d~~~---~~~~~~~~~ 163 (208)
.+|...++++..+++|++|+.||--+.. ...+|+++.
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~ka 185 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKA 185 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHc
Confidence 4788888999999999999999875543 334455544
No 292
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=24.65 E-value=4.8e+02 Score=22.85 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=46.5
Q ss_pred CcEEEEEEEcCCCCCCChhhHHHHHHHHHHH-hhCCeEEEEEeC------------CChhhHHHHHHHh-hhcCCCCCCc
Q 028461 108 KKYVILFFYPLDFTFVCPTEITAFSDRYTEF-EKLNTEILGVST------------DSVFSHLAWVQTD-RKSGGLGDLK 173 (208)
Q Consensus 108 k~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~-~~~gv~vi~Vs~------------d~~~~~~~~~~~~-~~~~~~~~~~ 173 (208)
+.++||+|-.|.||-. ....+.+..+..++ ...|..+|+|.. ||......|..+. -...+. +..
T Consensus 89 ~~p~lvyfHGGGf~~~-S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~-D~~ 166 (336)
T KOG1515|consen 89 KLPVLVYFHGGGFCLG-SANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNSWLKLGA-DPS 166 (336)
T ss_pred CceEEEEEeCCccEeC-CCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHHHHHHHHHhHHHHhCC-Ccc
Confidence 4589999999999944 22333333333333 333555655532 2223344455543 111122 333
Q ss_pred ceEEEcCc--cHHHHHhCCccCCC---CcccceEEEEE
Q 028461 174 YPLIADIT--KSISKSYGVLIPDQ---VKKSLLIFTWF 206 (208)
Q Consensus 174 f~~l~D~~--~~v~~~~gV~~~~~---g~~~r~~fvv~ 206 (208)
--+++..+ |-++........+. ....+|.+.+|
T Consensus 167 rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~ 204 (336)
T KOG1515|consen 167 RVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIY 204 (336)
T ss_pred cEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEe
Confidence 34444332 56666655543322 24455555554
No 293
>PRK10200 putative racemase; Provisional
Probab=24.21 E-value=1.6e+02 Score=24.04 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCChhh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFS 155 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~ 155 (208)
.-.+.|.+..+.+.+.|+++|.|..|....
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCNTah~ 88 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTNTMHK 88 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCchHHH
Confidence 456888888888999999999999998543
No 294
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=24.18 E-value=1.9e+02 Score=25.02 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHhhCCeE-EEEEeCCC------hhhHHHHHHHhhhcCCCCCCcceEEEcC
Q 028461 125 PTEITAFSDRYTEFEKLNTE-ILGVSTDS------VFSHLAWVQTDRKSGGLGDLKYPLIADI 180 (208)
Q Consensus 125 ~~~~~~l~~~~~~~~~~gv~-vi~Vs~d~------~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 180 (208)
..++..|+++.+..++.||+ +++||.-. .++..+.+++..+...++=-.|-++.|.
T Consensus 52 ~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD 114 (306)
T PF07555_consen 52 EEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDD 114 (306)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecC
Confidence 35677788887777777887 44676521 2344444444444334433346666664
No 295
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=23.99 E-value=1.4e+02 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=25.3
Q ss_pred CCCceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHH
Q 028461 95 QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSD 133 (208)
Q Consensus 95 ~~g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~ 133 (208)
.+|..+.|-++.+.+.+.|-|- |+ |..|...---|+.
T Consensus 125 ~dGGdielv~v~~~~~v~v~l~-Ga-C~gC~~s~~Tl~~ 161 (192)
T PRK11190 125 GHGGRVSLMEITEDGYAILQFG-GG-CNGCSMVDVTLKE 161 (192)
T ss_pred hcCCcEEEEEEcCCCEEEEEEe-ec-CCCCcchHHHHHH
Confidence 4566788888775445667776 88 8899866555553
No 296
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=23.83 E-value=2.5e+02 Score=22.30 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCeEEEEEeCCC----hhhHHHHHHHh
Q 028461 129 TAFSDRYTEFEKLNTEILGVSTDS----VFSHLAWVQTD 163 (208)
Q Consensus 129 ~~l~~~~~~~~~~gv~vi~Vs~d~----~~~~~~~~~~~ 163 (208)
..+.+..+++++.|+.|..|++.+ .+..+.+.++.
T Consensus 123 ~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 123 KDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 346677888888898877776543 45566677766
No 297
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.51 E-value=3.4e+02 Score=24.08 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=33.8
Q ss_pred cEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 109 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 109 ~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.++.+.-. +.++.+- ...-.+...++.+.|.++|=|++.+.+..++..+-.+..... +.+.|++.|-.
T Consensus 15 ~PI~VQSM--t~t~t~D--v~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~-g~~iPlVADIH 82 (359)
T PF04551_consen 15 APISVQSM--TNTDTRD--VEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRAL-GSPIPLVADIH 82 (359)
T ss_dssp S--EEEEE----S-TT---HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCT-T-SS-EEEEES
T ss_pred CCEEEEec--CCCCccc--HHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccC-CCCCCeeeecC
Confidence 46666655 2244433 222233344556779999999998876665544333221111 57899999974
No 298
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=23.42 E-value=2.7e+02 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=26.8
Q ss_pred EEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 110 YVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
+++|+=- .+.||.....+..|++.+++..+. +.++.+.+-.
T Consensus 21 ~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~ 61 (105)
T PF11009_consen 21 PVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIE 61 (105)
T ss_dssp EEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGG
T ss_pred cEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEe
Confidence 5555555 788999999999999988887764 7787776633
No 299
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=23.35 E-value=3.2e+02 Score=20.88 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.+...+..+++++.|+.+.-++-|.........+..
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l 164 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL 164 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc
Confidence 555666777788889999999988888888888887
No 300
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.28 E-value=2.3e+02 Score=21.66 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCC-hhhHHHHHHHh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDS-VFSHLAWVQTD 163 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~-~~~~~~~~~~~ 163 (208)
...+.+.+..+++++.|+.++.+|-++ ......+.+..
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~ 81 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL 81 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc
Confidence 446788888889998898888887766 33334444433
No 301
>PRK10026 arsenate reductase; Provisional
Probab=23.09 E-value=1.4e+02 Score=22.73 Aligned_cols=39 Identities=5% Similarity=-0.135 Sum_probs=25.4
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--C--ChhhHHHHHHHh
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTD 163 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~ 163 (208)
-.-|..|+..+.-|.+ .|+++..+.+ + +.+..+.|.+..
T Consensus 9 ~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 9 NPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred CCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 5669999887766654 3555555543 3 347788888876
No 302
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=23.00 E-value=79 Score=20.55 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=17.4
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEE
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILG 147 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~ 147 (208)
|..|+-||.|..+- -.+-+.+.+++++-
T Consensus 7 FIAGA~CP~C~~~D-----tl~mW~En~ve~vE 34 (66)
T COG3529 7 FIAGAVCPACQAQD-----TLAMWRENNVEIVE 34 (66)
T ss_pred hhccCCCcccchhh-----HHHHHHhcCCceEe
Confidence 33477899998652 22334566887663
No 303
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=22.85 E-value=2.1e+02 Score=22.61 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 131 FSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 131 l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
..+..++++++|+.|+.+|-.+....+.+.+..
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 445666677889999988888888888888877
No 304
>PRK00865 glutamate racemase; Provisional
Probab=22.38 E-value=4.5e+02 Score=21.76 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=40.8
Q ss_pred EEEEEEEcCCCCCCChhhHH----HHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 110 YVILFFYPLDFTFVCPTEIT----AFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~~~~----~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.-+++|.-..++|+-.+.-. .+.+..+.+.+.|++.|.|..|..- ..|.+..++ .+++|++. -.
T Consensus 31 ~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~--~~~l~~lr~-----~~~iPvig-i~ 98 (261)
T PRK00865 31 EHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTAS--AVALPDLRE-----RYDIPVVG-IV 98 (261)
T ss_pred CCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH--HHHHHHHHH-----hCCCCEEe-eH
Confidence 35888887888887764433 3445566677889999999988743 223333332 23567776 54
No 305
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=22.35 E-value=1.3e+02 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=26.9
Q ss_pred CChhhHHHHHHHHHHHhhCCeEEEEE-eCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 123 VCPTEITAFSDRYTEFEKLNTEILGV-STDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 123 ~C~~~~~~l~~~~~~~~~~gv~vi~V-s~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
.|.+.++.|+++ |+..|-| ++|+...|.+.++...+. .+.++.|.+
T Consensus 54 ~C~rDi~~l~~L-------giNtIRVY~vdp~~nHd~CM~~~~~a------GIYvi~Dl~ 100 (314)
T PF03198_consen 54 ACKRDIPLLKEL-------GINTIRVYSVDPSKNHDECMSAFADA------GIYVILDLN 100 (314)
T ss_dssp HHHHHHHHHHHH-------T-SEEEES---TTS--HHHHHHHHHT------T-EEEEES-
T ss_pred HHHHhHHHHHHc-------CCCEEEEEEeCCCCCHHHHHHHHHhC------CCEEEEecC
Confidence 677777777665 7777777 778877888888887543 366666654
No 306
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.26 E-value=1.7e+02 Score=21.30 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHh
Q 028461 128 ITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTD 163 (208)
Q Consensus 128 ~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 163 (208)
.|.+.++..+++++|+.++.+|-.+........+..
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~ 114 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL 114 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhcccccceeEEeecCCccccccccccc
Confidence 456666777777789999988888776666666666
No 307
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=22.22 E-value=4.4e+02 Score=21.50 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred CceEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceE
Q 028461 97 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPL 176 (208)
Q Consensus 97 g~~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~ 176 (208)
|..++.-|+..=...|++|- |+ =..|+.-.++.+... ..+.+|-+.-+..+..++ ++-++
T Consensus 108 G~~vNPLd~v~~~~~LvfiD-gd----D~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~~-------------l~~~v 167 (209)
T PRK13738 108 GEVVNPLQYVPFNQTLYFIN-GD----DPAQVAWMKRQTPPT--LESKIILVQGSIPEMSKA-------------LDSRI 167 (209)
T ss_pred CCeECcccccCCCceEEEEe-CC----CHHHHHHHHHhhhcc--CCceEEEECCCHHHHHHH-------------hCCce
Confidence 33444444432223455554 44 245554444433222 146677665443333322 35678
Q ss_pred EEcCccHHHHHhCCccC
Q 028461 177 IADITKSISKSYGVLIP 193 (208)
Q Consensus 177 l~D~~~~v~~~~gV~~~ 193 (208)
+.|..|.++++||+.--
T Consensus 168 YfdQ~G~Lt~rF~I~~V 184 (209)
T PRK13738 168 YFDQNGVLCQRFGIDQV 184 (209)
T ss_pred EEcCcchHHHhcCCeee
Confidence 88988999999998543
No 308
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.17 E-value=30 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.0
Q ss_pred EEcCCCCCCChhhHHHHH
Q 028461 115 FYPLDFTFVCPTEITAFS 132 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~ 132 (208)
|.|---||.|++.+|.|.
T Consensus 6 FGpei~CPhCRQ~ipALt 23 (163)
T TIGR02652 6 FGPEIRCPHCRQNIPALT 23 (163)
T ss_pred cCCcCcCchhhcccchhe
Confidence 556678999999999885
No 309
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=22.16 E-value=1.5e+02 Score=26.16 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=17.0
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEE
Q 028461 113 LFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEI 145 (208)
Q Consensus 113 L~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~v 145 (208)
|.+.+|..||+|..-...+.+..+--+..|+.+
T Consensus 49 I~lisGPGCPVCVtp~~~ID~ai~LA~~~~vil 81 (355)
T PF01924_consen 49 IELISGPGCPVCVTPQGDIDAAIELAKRPGVIL 81 (355)
T ss_dssp EEEEE-S--TTTTS-HHHHHHHHHHHTT--EEE
T ss_pred cEEecCCCCccEECcHHHHHHHHHHhCCCCeEE
Confidence 344468999999887777766655444445433
No 310
>PRK04011 peptide chain release factor 1; Provisional
Probab=22.13 E-value=1.4e+02 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCCCChhh------HHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 119 DFTFVCPTE------ITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 119 t~Cp~C~~~------~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
..||.|-.+ -+.+..+.+.+++.|.+|..||.+.
T Consensus 351 ~~c~~~~~~~~~~~~~~~v~~l~e~a~~~g~~v~iis~~~ 390 (411)
T PRK04011 351 KTCPKCGSELEIVEEEDIIEELSELAEQSGTKVEVISTDT 390 (411)
T ss_pred ccCcccCcccccchhhhHHHHHHHHHHHcCCEEEEECCCC
Confidence 346777433 2445566777777888888888766
No 311
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=22.06 E-value=1.1e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=27.7
Q ss_pred eEecccccCCcEEEEEEEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 99 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 99 ~v~Lsd~~gk~~vlL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
.+.+.+..|. .++|.--... |+.|+-.|....+ +.|..|+---.++
T Consensus 58 ~l~~~~~~Gd-~m~I~G~ypP-C~~CkG~Mr~~s~------~~g~~I~Y~w~~~ 103 (118)
T PF14427_consen 58 DLPLNQVPGD-RMLIDGQYPP-CNSCKGKMRRASE------KSGATIQYTWPNG 103 (118)
T ss_pred hcCccccCCc-eEEEeeecCC-CchhHHHHHHhhh------ccCcEEEEecCCC
Confidence 3555666787 6777766344 8899876655542 2366666544433
No 312
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.89 E-value=3e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhhCCeEEEEEeCCChhh---HHHHHHHh
Q 028461 126 TEITAFSDRYTEFEKLNTEILGVSTDSVFS---HLAWVQTD 163 (208)
Q Consensus 126 ~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~---~~~~~~~~ 163 (208)
.-+|...+++++++++|++|+.|+--+... ..+|+++.
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~ 160 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA 160 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc
Confidence 357888888999999999999997755433 45666665
No 313
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=21.37 E-value=1.1e+02 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=11.6
Q ss_pred EEEEEEEcCCCCCCChh
Q 028461 110 YVILFFYPLDFTFVCPT 126 (208)
Q Consensus 110 ~vlL~f~~~t~Cp~C~~ 126 (208)
|+-....|-.|||.|..
T Consensus 8 ~~r~~~~~~~~CpGCg~ 24 (277)
T PRK09628 8 YLRVDKMPTLWCWGCGD 24 (277)
T ss_pred HhccCCCCCCcCCCCCC
Confidence 33334557899999974
No 314
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=21.33 E-value=1.3e+02 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=14.8
Q ss_pred EEcCCCCCCChhh--HHHHHHHHHHH
Q 028461 115 FYPLDFTFVCPTE--ITAFSDRYTEF 138 (208)
Q Consensus 115 f~~~t~Cp~C~~~--~~~l~~~~~~~ 138 (208)
.+|-+|||.|-.- +..+.+..+++
T Consensus 15 ~~~~~~CpGCg~~~i~~~i~~al~~l 40 (301)
T PRK05778 15 GLPTTWCPGCGNFGILNAIIQALAEL 40 (301)
T ss_pred CCCCCCCCCCCChHHHHHHHHHHHHh
Confidence 3467899999744 44454444444
No 315
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=21.31 E-value=1e+02 Score=19.61 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=25.9
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCc
Q 028461 115 FYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADIT 181 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~ 181 (208)
+|....||.|....-.+... +..++++-|.....+....+..+... .-.+|++.|.+
T Consensus 4 Ly~~~~s~~s~~v~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~P-----~~~vP~l~~~g 60 (76)
T cd03053 4 LYGAAMSTCVRRVLLCLEEK-----GVDYELVPVDLTKGEHKSPEHLARNP-----FGQIPALEDGD 60 (76)
T ss_pred EEeCCCChhHHHHHHHHHHc-----CCCcEEEEeCccccccCCHHHHhhCC-----CCCCCEEEECC
Confidence 34345577776655444332 22234444443322222334444422 22477777654
No 316
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.23 E-value=3e+02 Score=19.29 Aligned_cols=53 Identities=6% Similarity=-0.051 Sum_probs=23.6
Q ss_pred HHHHhhCCeEEEEEeCCChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 135 YTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 135 ~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
.+..+......|.|+.|-++..+.-....-+.. ++++........++.++.|.
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~---~Ip~~~~~~tk~eLG~a~Gk 77 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLS---GIPVYEYEGSSVELGTLCGK 77 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHc---CCCEEEECCCHHHHHHHhCC
Confidence 333444445566666665444333222221111 33333332345666666664
No 317
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=21.16 E-value=1.1e+02 Score=21.86 Aligned_cols=59 Identities=7% Similarity=-0.081 Sum_probs=32.9
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeC--C--ChhhHHHHHHHhhhcCCCCCCcceEEEcCccHHHHHhCC
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVST--D--SVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 190 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~v~~~~gV 190 (208)
-.-|..|+..+.-|+ +.|+.+..+.+ + +.+....|.+.. +.++.-+....+...+..+.
T Consensus 6 ~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~~~t~~el~~~l~~~-------~~~~~~lin~~~~~y~~l~~ 68 (112)
T cd03034 6 NPRCSKSRNALALLE-------EAGIEPEIVEYLKTPPTAAELRELLAKL-------GISPRDLLRTKEAPYKELGL 68 (112)
T ss_pred CCCCHHHHHHHHHHH-------HCCCCeEEEecccCCcCHHHHHHHHHHc-------CCCHHHHHhcCCchHHHcCC
Confidence 456888887655444 34655555543 2 346677777776 33333333444555555544
No 318
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.48 E-value=31 Score=26.30 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.7
Q ss_pred EEcCCCCCCChhhHHHHH
Q 028461 115 FYPLDFTFVCPTEITAFS 132 (208)
Q Consensus 115 f~~~t~Cp~C~~~~~~l~ 132 (208)
|.|---||.|++.+|.|.
T Consensus 3 FGpei~CPhCRq~ipALt 20 (161)
T PF09654_consen 3 FGPEIQCPHCRQTIPALT 20 (161)
T ss_pred cCCcCcCchhhcccchhe
Confidence 445667999999999885
No 319
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=20.42 E-value=2.4e+02 Score=17.91 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=17.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhCCeEEEEEeCCC
Q 028461 118 LDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDS 152 (208)
Q Consensus 118 ~t~Cp~C~~~~~~l~~~~~~~~~~gv~vi~Vs~d~ 152 (208)
...||.|+...-.|. .+|+.+-.+.+|.
T Consensus 7 ~~~~p~c~kv~~~L~-------~~gi~y~~~~~~~ 34 (77)
T cd03040 7 YKTCPFCCKVRAFLD-------YHGIPYEVVEVNP 34 (77)
T ss_pred cCCCHHHHHHHHHHH-------HCCCceEEEECCc
Confidence 466999987765443 3466655555554
No 320
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=20.31 E-value=1.8e+02 Score=23.67 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHHhhCC-eEE
Q 028461 112 ILFFYPLDFTFVCPTEITAFSDRYTEFEKLN-TEI 145 (208)
Q Consensus 112 lL~f~~~t~Cp~C~~~~~~l~~~~~~~~~~g-v~v 145 (208)
||.|. |+|.|+=..++...+...+.++..+ +.+
T Consensus 2 ~~~~g-GSFdPiH~gHl~ia~~a~~~l~~~~~~~~ 35 (225)
T cd09286 2 VLLAC-GSFNPITNMHLRMFELARDHLHETGRYEV 35 (225)
T ss_pred EEEeC-cCcCCCcHHHHHHHHHHHHHHHhhcCcee
Confidence 55554 8999988888888888877776544 444
Done!