BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028462
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 131 AHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEI 173
A H + P AL+ F++A+ H+A +E +LD ++ + E+
Sbjct: 228 ALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAEL 270
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 36 GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALL 94
G P H++VL A S Q +K ++ GA + + + +S E L AL+
Sbjct: 44 GREFPTHRSVLAACS------------QYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 91
Query: 95 DFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCA 131
DF Y +L + ++ + +A +I +S CA
Sbjct: 92 DFAYTATL--TVSTANVGDILSAARLLEIPAVSHVCA 126
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 36 GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALL 94
G P H++VL A S Q +K ++ GA + + + +S E L AL+
Sbjct: 34 GREFPTHRSVLAACS------------QYFKKLFTSGAVVDQQNVYEIDFVSAEALTALM 81
Query: 95 DFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCA 131
DF Y +L + ++ + +A +I +S CA
Sbjct: 82 DFAYTATL--TVSTANVGDILSAARLLEIPAVSHVCA 116
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 31 LRPCYGPPLPAHKAVLYARSTI-LVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISR-- 87
+ P + ++ V+Y R V P P FD LM S + + V P R
Sbjct: 168 ISPTFSTDFVSYDFVIYERKDCKTVFPDPPFDQLLMT---GTDISVPKPKYVACPGVRIR 224
Query: 88 -----EELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDI 123
+ L+ L D L HG L P RT F FD+
Sbjct: 225 NHEEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDL 265
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 31 LRPCYGPPLPAHKAVLYARSTI-LVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISR-- 87
+ P + ++ V+Y R V P P FD LM S + + V P R
Sbjct: 172 ISPTFSTDFVSYDFVIYERKDCKTVFPDPPFDQLLMT---GTDISVPKPKYVACPGVRIR 228
Query: 88 -----EELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDI 123
+ L+ L D L HG L P RT F FD+
Sbjct: 229 NHEEFQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDL 269
>pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 291
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 80 IVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFS 117
I +L ++REE+E +L + E T K AVLFFS
Sbjct: 5 ISSLDLTREEVEEILKYAKEFKEGKEETIKASAVLFFS 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,202,875
Number of Sequences: 62578
Number of extensions: 236909
Number of successful extensions: 681
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 7
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)