Query 028462
Match_columns 208
No_of_seqs 119 out of 1365
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 6.9E-33 1.5E-37 250.4 17.6 181 7-203 6-200 (557)
2 PHA02790 Kelch-like protein; P 100.0 6.3E-33 1.4E-37 247.0 12.5 173 15-204 11-196 (480)
3 KOG4441 Proteins containing BT 100.0 8.3E-32 1.8E-36 243.4 16.3 184 5-203 15-210 (571)
4 PHA03098 kelch-like protein; P 100.0 4.1E-30 8.9E-35 231.6 13.2 165 22-203 5-181 (534)
5 KOG4350 Uncharacterized conser 99.9 3.6E-26 7.8E-31 192.4 9.8 187 7-206 25-223 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 5.3E-21 1.1E-25 164.1 13.8 180 10-203 98-295 (521)
7 PF00651 BTB: BTB/POZ domain; 99.9 1E-21 2.2E-26 141.4 6.1 107 17-137 1-110 (111)
8 KOG4591 Uncharacterized conser 99.8 6.7E-20 1.5E-24 141.8 12.1 156 11-182 51-209 (280)
9 KOG4682 Uncharacterized conser 99.8 1.1E-18 2.4E-23 147.0 12.0 169 17-201 60-245 (488)
10 smart00225 BTB Broad-Complex, 99.7 1.8E-17 4E-22 113.4 6.6 89 28-131 1-90 (90)
11 KOG0783 Uncharacterized conser 99.6 2.2E-15 4.8E-20 136.5 6.4 142 24-177 708-854 (1267)
12 KOG0511 Ankyrin repeat protein 98.7 9.6E-08 2.1E-12 81.0 8.7 135 37-186 301-446 (516)
13 KOG0783 Uncharacterized conser 98.6 1.8E-08 3.9E-13 92.4 3.2 92 9-111 537-643 (1267)
14 KOG2838 Uncharacterized conser 98.3 2.3E-06 4.9E-11 70.0 7.3 105 10-129 114-224 (401)
15 KOG2716 Polymerase delta-inter 98.3 4.4E-06 9.5E-11 67.3 8.1 96 29-137 7-104 (230)
16 KOG2838 Uncharacterized conser 98.2 2E-06 4.4E-11 70.3 5.7 88 10-104 219-328 (401)
17 PF07707 BACK: BTB And C-termi 98.2 2E-06 4.3E-11 60.6 4.9 62 143-204 1-73 (103)
18 KOG1987 Speckle-type POZ prote 98.0 4.7E-06 1E-10 69.9 4.0 143 36-193 109-257 (297)
19 smart00875 BACK BTB And C-term 97.8 3.3E-05 7.3E-10 53.7 4.6 62 143-204 1-73 (101)
20 PF02214 BTB_2: BTB/POZ domain 97.7 2E-05 4.3E-10 54.9 2.0 88 29-130 1-94 (94)
21 PF11822 DUF3342: Domain of un 97.6 3.7E-05 8E-10 64.6 2.6 96 29-138 1-104 (317)
22 smart00512 Skp1 Found in Skp1 97.4 0.00036 7.7E-09 49.6 5.2 60 28-99 3-63 (104)
23 KOG3473 RNA polymerase II tran 97.4 0.00043 9.3E-09 48.0 5.2 87 24-123 13-112 (112)
24 KOG0511 Ankyrin repeat protein 97.2 0.0017 3.6E-08 55.8 7.8 106 9-130 129-238 (516)
25 PF03931 Skp1_POZ: Skp1 family 96.5 0.0019 4.2E-08 41.4 2.3 57 28-99 2-59 (62)
26 KOG1724 SCF ubiquitin ligase, 96.4 0.022 4.7E-07 43.8 7.6 98 28-138 6-127 (162)
27 KOG2714 SETA binding protein S 95.4 0.039 8.5E-07 48.2 5.8 86 29-128 13-102 (465)
28 KOG1665 AFH1-interacting prote 95.1 0.029 6.4E-07 45.1 3.9 92 28-132 10-105 (302)
29 COG5201 SKP1 SCF ubiquitin lig 94.8 0.058 1.3E-06 39.6 4.5 101 27-142 2-126 (158)
30 PF01466 Skp1: Skp1 family, di 93.8 0.15 3.2E-06 34.2 4.5 47 107-153 12-61 (78)
31 KOG1778 CREB binding protein/P 93.7 0.037 8.1E-07 47.0 1.9 134 35-181 34-169 (319)
32 KOG2715 Uncharacterized conser 89.6 0.72 1.6E-05 35.6 4.6 102 24-137 18-121 (210)
33 PF11822 DUF3342: Domain of un 76.4 1 2.3E-05 38.2 0.6 41 137-177 71-111 (317)
34 KOG3840 Uncharaterized conserv 68.9 3.3 7.2E-05 35.1 1.9 83 28-124 97-185 (438)
35 PF00651 BTB: BTB/POZ domain; 65.0 11 0.00023 25.9 3.7 30 140-169 81-110 (111)
36 smart00875 BACK BTB And C-term 60.1 44 0.00096 22.2 6.1 58 113-170 3-74 (101)
37 KOG2723 Uncharacterized conser 57.5 16 0.00036 29.5 3.9 54 80-133 52-105 (221)
38 PF07707 BACK: BTB And C-termi 54.9 21 0.00046 24.1 3.7 60 112-171 2-75 (103)
39 KOG2075 Topoisomerase TOP1-int 53.5 46 0.00099 30.1 6.2 34 137-170 184-217 (521)
40 PHA02790 Kelch-like protein; P 50.1 36 0.00077 30.7 5.3 74 90-168 109-195 (480)
41 PHA03098 kelch-like protein; P 41.7 35 0.00076 30.9 3.9 63 107-169 106-182 (534)
42 KOG4682 Uncharacterized conser 38.2 32 0.00069 30.5 2.9 32 107-138 171-202 (488)
43 PF04343 DUF488: Protein of un 36.9 48 0.001 23.7 3.3 35 13-48 86-120 (122)
44 PF09127 Leuk-A4-hydro_C: Leuk 35.8 1.8E+02 0.0039 21.5 7.3 100 81-197 26-127 (143)
45 PF02637 GatB_Yqey: GatB domai 34.4 1.7E+02 0.0037 21.6 6.1 70 85-173 40-109 (148)
46 KOG4390 Voltage-gated A-type K 29.0 3.7E+02 0.008 24.0 7.8 88 29-131 42-132 (632)
47 PHA02713 hypothetical protein; 28.6 1.1E+02 0.0023 28.3 4.9 33 137-169 90-122 (557)
48 KOG1077 Vesicle coat complex A 25.6 1E+02 0.0022 29.6 4.1 68 87-167 403-470 (938)
49 PRK12284 tryptophanyl-tRNA syn 23.7 5.4E+02 0.012 23.1 10.7 32 72-103 202-233 (431)
50 KOG4350 Uncharacterized conser 22.0 1.7E+02 0.0037 26.2 4.6 32 137-168 112-143 (620)
51 PHA02956 hypothetical protein; 21.1 84 0.0018 23.5 2.2 26 118-143 149-174 (189)
52 PF01466 Skp1: Skp1 family, di 21.0 2.5E+02 0.0053 18.3 4.3 39 131-171 6-44 (78)
53 KOG3713 Voltage-gated K+ chann 20.4 4.9E+02 0.011 23.7 7.2 53 78-132 80-134 (477)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-33 Score=250.45 Aligned_cols=181 Identities=13% Similarity=0.163 Sum_probs=165.5
Q ss_pred HHhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCC-CceEEee-
Q 028462 7 MRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCE-TEIVNLP- 84 (208)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~-~~~i~l~- 84 (208)
..+...++.+|++|+.++.+|||++.+++|++|+|||.||+++|+||++||. ++|.|.. +.+|.|.
T Consensus 6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~------------~~~~e~~~~~~v~l~~ 73 (557)
T PHA02713 6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFT------------TPMIIRDLVTRVNLQM 73 (557)
T ss_pred hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhc------------CCchhhccCceEEecc
Confidence 4566889999999999999999999997689999999999999999999999 8998764 7899999
Q ss_pred cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHH
Q 028462 85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLD 164 (208)
Q Consensus 85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~ 164 (208)
+++.+++.+|+|+|||. + +.+++.+|+.+|++|+++.+++.|++||.+.++++||+.++..+..+.+..|.+.|.+
T Consensus 74 v~~~~~~~ll~y~Yt~~--i--~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~ 149 (557)
T PHA02713 74 FDKDAVKNIVQYLYNRH--I--SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKR 149 (557)
T ss_pred CCHHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999997 4 7789999999999999999999999999999999999999998998888899999999
Q ss_pred HHHhcHHHhhcchhHHH-------HHHhCCc-hHH----HHHHHHHhcccc
Q 028462 165 FIVENMEEIAFSKEYKQ-------FVRAFPN-HSV----RITQAFFMYGSN 203 (208)
Q Consensus 165 ~i~~~~~~i~~~~~f~~-------~~~~~~~-l~v----~i~~~~~~~~~~ 203 (208)
||.+||.++.++++|.+ .+++++. |++ ++++++++|...
T Consensus 150 ~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~ 200 (557)
T PHA02713 150 MLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY 200 (557)
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc
Confidence 99999999999999988 4566655 655 799999998764
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=247.02 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=160.0
Q ss_pred HHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEe--e-cCHHHHH
Q 028462 15 DGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNL--P-ISREELE 91 (208)
Q Consensus 15 ~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l--~-~~~~~~~ 91 (208)
+++..++..+.+|||++.+ |++|+|||.||++.|+||++||. +++.|+.+ .|.+ . +++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~HR~VLAa~S~YFraMF~------------~~~~Es~~-~v~~~~~~v~~~~l~ 75 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAI--GGNIIVNSTILKKLSPYFRTHLR------------QKYTKNKD-PVTRVCLDLDIHSLT 75 (480)
T ss_pred hhHHHHHhhhhhceEEEEc--CcEEeeehhhhhhcCHHHHHHhc------------CCcccccc-ceEEEecCcCHHHHH
Confidence 4567889999999999999 66999999999999999999999 89998865 4554 3 9999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHH
Q 028462 92 ALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENME 171 (208)
Q Consensus 92 ~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 171 (208)
.+|+|+|||++.+ +.+|+.+++.+|++||++.+++.|++||.+.++++||+.++.+|..|++..|.+.+.+||.+||.
T Consensus 76 ~lldy~YTg~l~i--t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~ 153 (480)
T PHA02790 76 SIVIYSYTGKVYI--DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFL 153 (480)
T ss_pred HHHHhheeeeEEE--ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHH
Confidence 9999999999988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc--hhHHH----HHHhCCchHH----HHHHHHHhccccc
Q 028462 172 EIAFS--KEYKQ----FVRAFPNHSV----RITQAFFMYGSNK 204 (208)
Q Consensus 172 ~i~~~--~~f~~----~~~~~~~l~v----~i~~~~~~~~~~~ 204 (208)
++.++ ++|.+ .++++++|++ ++++++++|...+
T Consensus 154 ~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 154 ELEDDIIDNFDYLSMKLILESDELNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred HHhcccchhhhhCCHHHhcccccCCCccHHHHHHHHHHHHHhh
Confidence 99986 88865 7888999987 7999999998754
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.98 E-value=8.3e-32 Score=243.36 Aligned_cols=184 Identities=24% Similarity=0.292 Sum_probs=175.1
Q ss_pred HHHHhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee
Q 028462 5 ELMRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP 84 (208)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~ 84 (208)
....+...++++++.++..+.+|||++.++ +++|+|||.||++.|+||++||. +++.|+++.+|.+.
T Consensus 15 ~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~-~~~~~aHR~VLAa~S~YFraMFt------------~~l~e~~~~~i~l~ 81 (571)
T KOG4441|consen 15 TDPSHSKFLLQGLNELREEGLLCDVTLLVG-DREFPAHRVVLAACSPYFRAMFT------------SGLKESKQKEINLE 81 (571)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEEC-CeeechHHHHHHhccHHHHHHhc------------CCcccccceEEEEe
Confidence 456677889999999999999999999997 79999999999999999999999 99999999999999
Q ss_pred -cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHH
Q 028462 85 -ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVL 163 (208)
Q Consensus 85 -~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~ 163 (208)
+++.+++.+++|+|||.+.+ +.+|+++|+.+|..||++.+.+.|++||..+++++||+.+..+|..|++..|.+.+.
T Consensus 82 ~v~~~~l~~ll~y~Yt~~i~i--~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~ 159 (571)
T KOG4441|consen 82 GVDPETLELLLDYAYTGKLEI--SEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVAD 159 (571)
T ss_pred cCCHHHHHHHHHHhhcceEEe--chHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcHHHhhcchhHHH-------HHHhCCchHH----HHHHHHHhcccc
Q 028462 164 DFIVENMEEIAFSKEYKQ-------FVRAFPNHSV----RITQAFFMYGSN 203 (208)
Q Consensus 164 ~~i~~~~~~i~~~~~f~~-------~~~~~~~l~v----~i~~~~~~~~~~ 203 (208)
.|+.+||.++..+++|++ .+++++.|++ +++++++.|...
T Consensus 160 ~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~ 210 (571)
T KOG4441|consen 160 EYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKH 210 (571)
T ss_pred HHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhc
Confidence 999999999999999998 6777888888 789999988765
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=231.57 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=152.4
Q ss_pred hcCCCCceEEec-CCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEeecCHHHHHHHHHHHhcC
Q 028462 22 REQTPPDIHLRP-CYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLPISREELEALLDFLYHG 100 (208)
Q Consensus 22 ~~~~~~Dv~~~~-~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~~~~~~~~~~l~~iYtg 100 (208)
.++.+|||++.+ .+|++|+|||.||+++|+||++||. +++. +..|.++.++++|+.+|+|+|||
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~------------~~~~---~~~i~l~~~~~~~~~~l~y~Ytg 69 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFK------------NNFK---ENEINLNIDYDSFNEVIKYIYTG 69 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHh------------CCCC---CceEEecCCHHHHHHHHHHhcCC
Confidence 389999999998 2389999999999999999999998 7777 45677777999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcchhHH
Q 028462 101 SLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYK 180 (208)
Q Consensus 101 ~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~~f~ 180 (208)
++.+ +.+++.+|+.+|++|+++.|+..|++++...++++||+.++.+|..+++..|.+.|.+||.+||.++..+++|.
T Consensus 70 ~~~i--~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~ 147 (534)
T PHA03098 70 KINI--TSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFI 147 (534)
T ss_pred ceEE--cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 9987 99999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred H-------HHHhCCchHH----HHHHHHHhcccc
Q 028462 181 Q-------FVRAFPNHSV----RITQAFFMYGSN 203 (208)
Q Consensus 181 ~-------~~~~~~~l~v----~i~~~~~~~~~~ 203 (208)
+ .+++++.|.+ ++++++++|...
T Consensus 148 ~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~ 181 (534)
T PHA03098 148 YLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTS 181 (534)
T ss_pred cCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhc
Confidence 7 7788888877 689999999744
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=3.6e-26 Score=192.43 Aligned_cols=187 Identities=19% Similarity=0.261 Sum_probs=165.3
Q ss_pred HHhHHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-c
Q 028462 7 MRMKCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-I 85 (208)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~ 85 (208)
+.-..++..++.+++-+..++||+|++. ++.|+|||.||++||.||++|+. ++|+|+.+..|.|+ .
T Consensus 25 ~~i~~~fS~~~~~l~~~e~y~DVtfvve-~~rfpAHRvILAaRs~yFRAlLY------------gGm~Es~q~~ipLq~t 91 (620)
T KOG4350|consen 25 AAISNNFSQSFDELFTSEDYSDVTFVVE-DTRFPAHRVILAARSSYFRALLY------------GGMQESHQQLIPLQET 91 (620)
T ss_pred hhhccchhHHHHHHhhcCcccceEEEEe-ccccchhhhhHHHHHHHHHHHHh------------hhhhhhhhcccccccc
Confidence 3344567899999999999999999995 79999999999999999999999 99999999999999 8
Q ss_pred CHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHH
Q 028462 86 SREELEALLDFLYHGSLDPER-TEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLD 164 (208)
Q Consensus 86 ~~~~~~~~l~~iYtg~i~~~~-~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~ 164 (208)
..++|.++|+|||||.+.+.. .++-+.+.+.+|.+||.+.|.....+|+..-++.+|++.++..|..|+...|-+.|..
T Consensus 92 ~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~m 171 (620)
T KOG4350|consen 92 NSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMM 171 (620)
T ss_pred cHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHH
Confidence 899999999999999998632 4556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcHHHhhcchhHHHH-------HHhCCc---hHHHHHHHHHhccccccc
Q 028462 165 FIVENMEEIAFSKEYKQF-------VRAFPN---HSVRITQAFFMYGSNKRI 206 (208)
Q Consensus 165 ~i~~~~~~i~~~~~f~~~-------~~~~~~---l~v~i~~~~~~~~~~~~~ 206 (208)
|.-+|..+++.+++|..+ ++..+. ..++|+-|+.+|-++-++
T Consensus 172 fmDrnA~~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~~Nsk 223 (620)
T KOG4350|consen 172 FMDRNADQLLEDPSFNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQNNSK 223 (620)
T ss_pred HHhcCHHhhhcCcchhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhcCch
Confidence 999999999999988762 222222 235999999999876553
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.86 E-value=5.3e-21 Score=164.09 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhhcCCCCceEEecCCC----CcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-
Q 028462 10 KCEFLDGFDASLREQTPPDIHLRPCYG----PPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP- 84 (208)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~Dv~~~~~~~----~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~- 84 (208)
+.++...+-.++++...+|++|+++++ +.|+|||.||+..|..|.+||. +++.+....+|.++
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~------------g~~a~~~s~ei~lpd 165 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFY------------GGLAEDASLEIRLPD 165 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhc------------cCcccccCceeecCC
Confidence 567788888999999999999999852 6899999999999999999999 99988877899999
Q ss_pred cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHH-HhcCChHHHHHHHH
Q 028462 85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKN-AVGCSHRALLEAVL 163 (208)
Q Consensus 85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~-a~~~~~~~L~~~~~ 163 (208)
+.|.+|..+|+|+|++.+.+ ..++++.++.+|++|-++.|...|.++|+..+.+.|.+..+-. |...+-.+|...|+
T Consensus 166 vepaaFl~~L~flYsdev~~--~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~ 243 (521)
T KOG2075|consen 166 VEPAAFLAFLRFLYSDEVKL--AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICL 243 (521)
T ss_pred cChhHhHHHHHHHhcchhhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999998888777766 99999999999999
Q ss_pred HHHHhcHHHhhcchhHHH---------HHHhCCchHH---HHHHHHHhcccc
Q 028462 164 DFIVENMEEIAFSKEYKQ---------FVRAFPNHSV---RITQAFFMYGSN 203 (208)
Q Consensus 164 ~~i~~~~~~i~~~~~f~~---------~~~~~~~l~v---~i~~~~~~~~~~ 203 (208)
+-|..++++..+.+.|.+ .++..+.+.+ .+++++++|...
T Consensus 244 e~id~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 244 EVIDKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAREFRLFEAALKWAEA 295 (521)
T ss_pred HHhhhHHHhhhCccceeehhhHHHHHHHHHhhcccchhHHHHHHHHHhhccC
Confidence 999999999988776655 4556666665 788999988754
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.85 E-value=1e-21 Score=141.35 Aligned_cols=107 Identities=22% Similarity=0.355 Sum_probs=94.7
Q ss_pred HHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcC-CCCCCCceEEee-cCHHHHHHHH
Q 028462 17 FDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLG-ASSCETEIVNLP-ISREELEALL 94 (208)
Q Consensus 17 ~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~-~~e~~~~~i~l~-~~~~~~~~~l 94 (208)
|+++++++.+||++|.++||..|+|||.||+++|+||+.||. ++ +.+....+|.++ +++++|..++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~l 68 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFE------------GSKFKESTVPEISLPDVSPEAFEAFL 68 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHT------------TTTSTTSSEEEEEETTSCHHHHHHHH
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccc------------cccccccccccccccccccccccccc
Confidence 578999999999999998789999999999999999999998 55 456655678888 9999999999
Q ss_pred HHHhcCCCCCccc-HHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 028462 95 DFLYHGSLDPERT-EKHIAVLFFSAWNFDILYLSEFCAHHILSS 137 (208)
Q Consensus 95 ~~iYtg~i~~~~~-~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 137 (208)
+|+|+|.+.+ + .+++.+++.+|++|+++.|+..|+++|.++
T Consensus 69 ~~~Y~~~~~~--~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 69 EYMYTGEIEI--NSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHSEEEE--E-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ccccCCcccC--CHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 9999999987 6 899999999999999999999999999754
No 8
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.83 E-value=6.7e-20 Score=141.79 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhcCCCCceEEecCC--CCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCH
Q 028462 11 CEFLDGFDASLREQTPPDIHLRPCY--GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISR 87 (208)
Q Consensus 11 ~~~~~~~~~l~~~~~~~Dv~~~~~~--~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~ 87 (208)
+.++.-...++..+.|||++|.+++ .+.++|||.||++||.+++-.- ....++.+..+. .++
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN---------------~~dekse~~~~dDad~ 115 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFAN---------------GGDEKSEELDLDDADF 115 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhcc---------------CCCcchhhhcccccCH
Confidence 3445556788999999999999974 4789999999999999886422 223344566777 999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHH
Q 028462 88 EELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIV 167 (208)
Q Consensus 88 ~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~ 167 (208)
++|...++||||+++++-.+..-+..+...|+.|++.-|+..|++-+-..++.+||+.+|+.|++.+..+|...|...|+
T Consensus 116 Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA 195 (280)
T KOG4591|consen 116 EAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA 195 (280)
T ss_pred HHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998556677899999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHhhcchhHHHH
Q 028462 168 ENMEEIAFSKEYKQF 182 (208)
Q Consensus 168 ~~~~~i~~~~~f~~~ 182 (208)
.+|.++ ...+|.++
T Consensus 196 ~~W~dL-~~a~FaqM 209 (280)
T KOG4591|consen 196 GAWDDL-GKADFAQM 209 (280)
T ss_pred hhcccc-ChHHHHhc
Confidence 999876 56677763
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=147.02 Aligned_cols=169 Identities=16% Similarity=0.218 Sum_probs=153.3
Q ss_pred HHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-----cCHHHHH
Q 028462 17 FDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-----ISREELE 91 (208)
Q Consensus 17 ~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-----~~~~~~~ 91 (208)
+..++.+|..|||++.+- |.+.+.||.-|. +|+||.+||+ |.|+|++...|.+. |+..++.
T Consensus 60 yq~lf~q~enSDv~l~al-g~eWrlHk~yL~-QS~yf~smf~------------Gtw~es~~~iIqleI~Dp~Id~~al~ 125 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEAL-GFEWRLHKPYLF-QSEYFKSMFS------------GTWKESSMNIIQLEIPDPNIDVVALQ 125 (488)
T ss_pred HHHHHhcCCCcceehhhc-cceeeeeeeeee-ccHHHHHHhc------------cccChhhCceEEEEcCCCcccHHHHH
Confidence 788999999999999997 999999999995 7899999999 99999999877775 7889999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHH
Q 028462 92 ALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENME 171 (208)
Q Consensus 92 ~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 171 (208)
.++.-+|.+++.+ +.+.+.+++++|.+++++.+.+-|.+.+...++|++++.+|+.+..|+.+.+.+.|.+++..|+-
T Consensus 126 ~a~gsLY~dEveI--~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~ 203 (488)
T KOG4682|consen 126 VAFGSLYRDEVEI--KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLM 203 (488)
T ss_pred HHHhhhhhhheec--cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhH
Confidence 9999999999988 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcchhHHH-------HHHhCCchHH-----HHHHHHHhcc
Q 028462 172 EIAFSKEYKQ-------FVRAFPNHSV-----RITQAFFMYG 201 (208)
Q Consensus 172 ~i~~~~~f~~-------~~~~~~~l~v-----~i~~~~~~~~ 201 (208)
.+...+-+.+ .++.+|.|-+ ++|..+..|.
T Consensus 204 ~i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 204 TIQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hhhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 8877654333 6777887765 7777777765
No 10
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=1.8e-17 Score=113.38 Aligned_cols=89 Identities=34% Similarity=0.400 Sum_probs=82.0
Q ss_pred ceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcCCCCCcc
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPER 106 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg~i~~~~ 106 (208)
|+++.++ |+.+++||.+|+++|+||+.||. +++.+.....+.++ .++.+|+.+++|+|+|.+.+
T Consensus 1 dv~i~v~-~~~~~~h~~iL~~~s~~f~~~~~------------~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~-- 65 (90)
T smart00225 1 DVTLVVG-GKKFKAHKAVLAACSPYFKALFS------------GDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDL-- 65 (90)
T ss_pred CeEEEEC-CEEEehHHHHHhhcCHHHHHHHc------------CCCccCCCCEEEecCCCHHHHHHHHHeecCceeec--
Confidence 7889996 89999999999999999999998 77777677899999 99999999999999999987
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHH
Q 028462 107 TEKHIAVLFFSAWNFDILYLSEFCA 131 (208)
Q Consensus 107 ~~~~~~~ll~~A~~~~~~~l~~~c~ 131 (208)
+..++.+++.+|++|+++.+...|+
T Consensus 66 ~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 66 PEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 7779999999999999999999884
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.58 E-value=2.2e-15 Score=136.46 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=121.4
Q ss_pred CCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhc-CC
Q 028462 24 QTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYH-GS 101 (208)
Q Consensus 24 ~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYt-g~ 101 (208)
+..-|+.+.+.||+.++||+++|++|++||..||. .-|.|+..-.+.+. +..+.++.+|+|+|+ ..
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~------------~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~ 775 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQ------------FVWMESSSITVNLSPLTVEHMSIVLDYLYSDDK 775 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHH------------HHHhhhccceeecCcchHHHHHHHHHHHHccch
Confidence 34448999999999999999999999999999998 77888876555555 889999999999995 32
Q ss_pred CCC---cccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcch
Q 028462 102 LDP---ERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSK 177 (208)
Q Consensus 102 i~~---~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~ 177 (208)
..+ -...+-+.+++.+||-|-+..|+.+|+.-|...++..+|-.++++|..|++..|+..|++||..|+..++.-.
T Consensus 776 ~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 776 VELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred HHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 211 1134457889999999999999999999999999999999999999999999999999999999988776543
No 12
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.68 E-value=9.6e-08 Score=80.99 Aligned_cols=135 Identities=14% Similarity=0.039 Sum_probs=111.0
Q ss_pred CcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCC-C---ceEEee-cCHHHHHHHHHHHhcCCCCCcccHHHH
Q 028462 37 PPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCE-T---EIVNLP-ISREELEALLDFLYHGSLDPERTEKHI 111 (208)
Q Consensus 37 ~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~-~---~~i~l~-~~~~~~~~~l~~iYtg~i~~~~~~~~~ 111 (208)
..+|||+.+++ |.+||+.||. |++.|+. + +...+| ....+++..++|+|+.+.++ ..+-+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~------------g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi--~~~~A 365 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFV------------GDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDI--IFDVA 365 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhc------------cchhhhcCCccccccccchHHHHHHHHHHHHhhcccccc--hHHHH
Confidence 46999999996 6679999998 9998843 2 355667 78899999999999999987 88888
Q ss_pred HHHHHHHHhcChH--H-HHHHHHHHHHh---cCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcchhHHHHHHh
Q 028462 112 AVLFFSAWNFDIL--Y-LSEFCAHHILS---SLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQFVRA 185 (208)
Q Consensus 112 ~~ll~~A~~~~~~--~-l~~~c~~~l~~---~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~~f~~~~~~ 185 (208)
.+++..|+++.+. + |+.++...|.+ -++.-+++.++..|...+...|...+..|+..|...++..|++.+.+..
T Consensus 366 ~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 366 SDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 9999999998665 2 55555554444 3456678999999999999999999999999999999999999985554
Q ss_pred C
Q 028462 186 F 186 (208)
Q Consensus 186 ~ 186 (208)
+
T Consensus 446 s 446 (516)
T KOG0511|consen 446 S 446 (516)
T ss_pred c
Confidence 4
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.63 E-value=1.8e-08 Score=92.42 Aligned_cols=92 Identities=24% Similarity=0.286 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhcC----CCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCC-------
Q 028462 9 MKCEFLDGFDASLREQ----TPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCE------- 77 (208)
Q Consensus 9 ~~~~~~~~~~~l~~~~----~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~------- 77 (208)
-.+++.+.|.+++... .+.||+|.|| ++.|+|||.||++||++|+.+|. .+ ++-++..
T Consensus 537 ~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg-~~~F~aHKfIl~~rs~flrkL~l--------~~--~~~s~~~dIY~~~~ 605 (1267)
T KOG0783|consen 537 ASSNFEGSFPKLLSEENYKDSFHDVTFYVG-TSMFHAHKFILCARSSFLRKLLL--------QK--KKSSVSNDIYIEEI 605 (1267)
T ss_pred ccccchhhhHHHhhccccccccceEEEEec-CeecccceEEEEeccHHHHHHHH--------hh--ccccccceeeeecc
Confidence 3456778888888775 4568999997 99999999999999999999886 11 1111111
Q ss_pred ---CceEEee-cCHHHHHHHHHHHhcCCCCCcccHHHH
Q 028462 78 ---TEIVNLP-ISREELEALLDFLYHGSLDPERTEKHI 111 (208)
Q Consensus 78 ---~~~i~l~-~~~~~~~~~l~~iYtg~i~~~~~~~~~ 111 (208)
-..|.++ ++|.+|+.+|+||||....-+..++++
T Consensus 606 ~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdi 643 (1267)
T KOG0783|consen 606 TQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDI 643 (1267)
T ss_pred cccCceeeeccCCHHHHHHHHHHHhcccccCCccccch
Confidence 1255578 999999999999999854432244443
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.31 E-value=2.3e-06 Score=70.03 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCc----eEEee-
Q 028462 10 KCEFLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETE----IVNLP- 84 (208)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~----~i~l~- 84 (208)
.-+++++|...+......|+-++.. ...|+|||.+|++|+++|+.+.. . .+.... .+.+-
T Consensus 114 a~sf~kD~ad~ye~k~c~dldiiFk-eTcfpahRA~laaRCpffK~l~n------------s--d~e~~ae~i~dik~ag 178 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDIIFK-ETCFPAHRAFLAARCPFFKILAN------------S--DEEPEAEDICDIKFAG 178 (401)
T ss_pred hhHHHHHHhhhhheeeeccceeeee-eccchHHHHHHHhhCcchhhhcc------------C--CCCcchhhhhhhhhhc
Confidence 3467888888888888889999996 78999999999999999999876 2 222222 44555
Q ss_pred cCHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHHHhcChHHHHHH
Q 028462 85 ISREELEALLDFLYHGSLDPER-TEKHIAVLFFSAWNFDILYLSEF 129 (208)
Q Consensus 85 ~~~~~~~~~l~~iYtg~i~~~~-~~~~~~~ll~~A~~~~~~~l~~~ 129 (208)
++..+|+++|.|+|+|+..++. ...|+.-|-+++.-||.+.-.+.
T Consensus 179 ~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kkLd~ 224 (401)
T KOG2838|consen 179 FDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKKLDE 224 (401)
T ss_pred cChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchhhhH
Confidence 8999999999999999998632 33456667778888887644433
No 15
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.27 E-value=4.4e-06 Score=67.31 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred eEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCC--CCCCceEEeecCHHHHHHHHHHHhcCCCCCcc
Q 028462 29 IHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGAS--SCETEIVNLPISREELEALLDFLYHGSLDPER 106 (208)
Q Consensus 29 v~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~--e~~~~~i~l~~~~~~~~~~l~~iYtg~i~~~~ 106 (208)
|.+.|| |..|...+.-|.....+|++|+. .++. ...+.-|-+.-+|.-|+.+|.||-.|.+.++.
T Consensus 7 vkLnvG-G~~F~Tsk~TLtk~dg~fk~m~e------------~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe 73 (230)
T KOG2716|consen 7 VKLNVG-GTIFKTSKSTLTKFDGFFKTMLE------------TDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPE 73 (230)
T ss_pred EEEecC-CeEEEeehhhhhhhhhHHHHHhh------------cCCccccCCcCcEEecCChhHHHHHHHhhhcccccCcc
Confidence 557887 99999999999999999999998 6552 22333466668999999999999999998877
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 028462 107 TEKHIAVLFFSAWNFDILYLSEFCAHHILSS 137 (208)
Q Consensus 107 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 137 (208)
+...+.+|+.=|.+|.++.|.+.|...+...
T Consensus 74 ~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 74 SEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 8899999999999999999999999987654
No 16
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.24 E-value=2e-06 Score=70.33 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCCC-ceEEecCCC--------------CcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCC
Q 028462 10 KCEFLDGFDASLREQTPP-DIHLRPCYG--------------PPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGAS 74 (208)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~-Dv~~~~~~~--------------~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~ 74 (208)
..++-.++..++...-.- |+++.+.|| .+++||+.|.++||++|+.++. |+--.++--
T Consensus 219 ~kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~-------RkiregeE~ 291 (401)
T KOG2838|consen 219 FKKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLL-------RKIREGEEG 291 (401)
T ss_pred chhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHH-------HHhhccccc
Confidence 344556677777666444 555555454 3799999999999999998875 222222111
Q ss_pred ----CCCCceEEee--cCHHHHH-HHHHHHhcCCCCC
Q 028462 75 ----SCETEIVNLP--ISREELE-ALLDFLYHGSLDP 104 (208)
Q Consensus 75 ----e~~~~~i~l~--~~~~~~~-~~l~~iYtg~i~~ 104 (208)
-+....|.+. |-|.+|. .++.++||+.++.
T Consensus 292 sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDl 328 (401)
T KOG2838|consen 292 SDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDL 328 (401)
T ss_pred ccccccCCceeechhhhcchhhhhhhhhhheecccch
Confidence 1112366676 5555554 5789999987764
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.23 E-value=2e-06 Score=60.58 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcchhHHH-------HHHhCCchHH----HHHHHHHhccccc
Q 028462 143 ALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQ-------FVRAFPNHSV----RITQAFFMYGSNK 204 (208)
Q Consensus 143 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~~f~~-------~~~~~~~l~v----~i~~~~~~~~~~~ 204 (208)
|+.++..|..+++..|.+.|.+||..||.++..+++|.+ .+++++.+++ ++++++++|....
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~ 73 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN 73 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999988 7778888865 8999999997665
No 18
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.02 E-value=4.7e-06 Score=69.94 Aligned_cols=143 Identities=20% Similarity=0.135 Sum_probs=111.5
Q ss_pred CCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcCCCCCcccHHHHH--
Q 028462 36 GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIA-- 112 (208)
Q Consensus 36 ~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg~i~~~~~~~~~~-- 112 (208)
|..+.+|+.+++++|+.|+.|+. .+..+.....+.+. .++..++++..|.|+..-.. ..+...
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~------------~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~--~~~~~~~~ 174 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGK------------SDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVS--SVERIFEK 174 (297)
T ss_pred CcEEEcCceEEEeeecceeeecc------------cccchhccccccccccchhhHhhhceEEEeccchH--HHHHhhcC
Confidence 56799999999999999999998 66655555566777 89999999999999965443 444443
Q ss_pred -HHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHh--cHHHhhcchhHHHHHHhCCch
Q 028462 113 -VLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVE--NMEEIAFSKEYKQFVRAFPNH 189 (208)
Q Consensus 113 -~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~i~~~~~f~~~~~~~~~l 189 (208)
.++..+..++.+.++..|...+...+...++...+..+..+....+...+..++.. +...+-....+...... +++
T Consensus 175 ~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~-~~~ 253 (297)
T KOG1987|consen 175 HPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKK-KDL 253 (297)
T ss_pred ChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhh-HHH
Confidence 77889999999999999999999998888888888888888888888888888887 66666554444333332 444
Q ss_pred HHHH
Q 028462 190 SVRI 193 (208)
Q Consensus 190 ~v~i 193 (208)
..++
T Consensus 254 ~~~~ 257 (297)
T KOG1987|consen 254 WYEI 257 (297)
T ss_pred HHHH
Confidence 4433
No 19
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.81 E-value=3.3e-05 Score=53.70 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcchhHHH-------HHHhCCchHH----HHHHHHHhccccc
Q 028462 143 ALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQ-------FVRAFPNHSV----RITQAFFMYGSNK 204 (208)
Q Consensus 143 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~~f~~-------~~~~~~~l~v----~i~~~~~~~~~~~ 204 (208)
|+.++..|..|++..|.+.|.+||..||..+..+++|.+ .+++++++.+ ++++++++|....
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 467888999999999999999999999999999999987 6677777764 8899999998754
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.70 E-value=2e-05 Score=54.91 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=63.9
Q ss_pred eEEecCCCCcchHHHHHHhh-cChHhhCCCCCChHHHHHhhhhcC---CCCCCCceEEeecCHHHHHHHHHHHhc-CCCC
Q 028462 29 IHLRPCYGPPLPAHKAVLYA-RSTILVHPPPTFDAQLMRKYWSLG---ASSCETEIVNLPISREELEALLDFLYH-GSLD 103 (208)
Q Consensus 29 v~~~~~~~~~i~aHk~iL~~-~S~yF~~~f~~~~~~~~~~~~~~~---~~e~~~~~i~l~~~~~~~~~~l~~iYt-g~i~ 103 (208)
|.+.|| |+.|.+-+..|.. ...+|..|+. ++ .....+..+-+.-+|..|+.+|+|+-+ |.+.
T Consensus 1 V~lNVG-G~~f~~~~~tL~~~~~s~l~~~~~------------~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~ 67 (94)
T PF02214_consen 1 VRLNVG-GTIFETSRSTLTRYPDSLLARLFS------------GERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLP 67 (94)
T ss_dssp EEEEET-TEEEEEEHHHHHTSTTSTTTSHHH------------TGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB-
T ss_pred CEEEEC-CEEEEEcHHHHhhCCCChhhhHHh------------hccccccCCccceEEeccChhhhhHHHHHHhhcCccC
Confidence 678998 9999999999984 4568888876 32 233444566666899999999999999 5665
Q ss_pred CcccHHHHHHHHHHHHhcChHHH-HHHH
Q 028462 104 PERTEKHIAVLFFSAWNFDILYL-SEFC 130 (208)
Q Consensus 104 ~~~~~~~~~~ll~~A~~~~~~~l-~~~c 130 (208)
. .+...+..++.-|.+|+++.+ .+.|
T Consensus 68 ~-~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 68 I-PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp ---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred C-CCchhHHHHHHHHHHcCCCccccCCC
Confidence 3 135678889999999999988 5554
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.60 E-value=3.7e-05 Score=64.58 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=77.0
Q ss_pred eEEecCC-----CCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCC-CCCCCceEEee--cCHHHHHHHHHHHhcC
Q 028462 29 IHLRPCY-----GPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGA-SSCETEIVNLP--ISREELEALLDFLYHG 100 (208)
Q Consensus 29 v~~~~~~-----~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~-~e~~~~~i~l~--~~~~~~~~~l~~iYtg 100 (208)
|+|+|.| .+.|.|.+..|...=.||+..++ ... ......+|.+. -|..+|+-+++|+...
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~------------~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~ 68 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLS------------RYINDSQRWEEIDISVHCDVHIFEWLMRYVKGE 68 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHh------------hcccccCcCCCcceEEecChhHHHHHHHHhhcC
Confidence 4566655 36899999999998899998885 311 11223356676 8999999999999996
Q ss_pred CCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q 028462 101 SLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSL 138 (208)
Q Consensus 101 ~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 138 (208)
...+ +..|+..++..|++++|+.|.+.|..|+.+++
T Consensus 69 ~p~l--~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 69 PPSL--TPSNVVSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred CCcC--CcCcEEEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 6666 99999999999999999999999999986653
No 22
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.41 E-value=0.00036 Score=49.59 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=46.7
Q ss_pred ceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhc
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYH 99 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYt 99 (208)
-|+++..||..|.+.+.+. ..|..++.|+. +.+....+...|.++ ++..+++.+++|++.
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~-----------~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIE-----------DLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHH-----------ccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 4788888999999999987 58888898886 122222222589999 999999999999965
No 23
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.40 E-value=0.00043 Score=47.99 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=65.3
Q ss_pred CCCCc-eEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCC--CCCCCceEEee-cCHHHHHHHHHHH--
Q 028462 24 QTPPD-IHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGA--SSCETEIVNLP-ISREELEALLDFL-- 97 (208)
Q Consensus 24 ~~~~D-v~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~--~e~~~~~i~l~-~~~~~~~~~l~~i-- 97 (208)
|..++ |.++.+||.+|-.-|-+- .-|.-.|+|+. ++. .+...++|.++ ++.+.++.+.+|+
T Consensus 13 gp~~~yVkLvS~Ddhefiikre~A-mtSgTiraml~------------gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Y 79 (112)
T KOG3473|consen 13 GPDSMYVKLVSSDDHEFIIKREHA-MTSGTIRAMLS------------GPGVFSEAEKNEVYFRDIPSHILEKVCEYLAY 79 (112)
T ss_pred CcchhheEeecCCCcEEEEeehhh-hhhhHHHHHHc------------CCccccccccceEEeccchHHHHHHHHHHhhh
Confidence 33344 666777787777766654 46778899997 654 55666799999 9999999999998
Q ss_pred ---hcCC---C-CCcccHHHHHHHHHHHHhcCh
Q 028462 98 ---YHGS---L-DPERTEKHIAVLFFSAWNFDI 123 (208)
Q Consensus 98 ---Ytg~---i-~~~~~~~~~~~ll~~A~~~~~ 123 (208)
|++. + .++++.+-+.+|+.+|+++.+
T Consensus 80 k~rY~~~s~eiPeF~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 80 KVRYTNSSTEIPEFDIPPEMALELLMAANYLEC 112 (112)
T ss_pred eeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence 6665 1 235588999999999998863
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.20 E-value=0.0017 Score=55.76 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHhhcCCC---CceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceE-Eee
Q 028462 9 MKCEFLDGFDASLREQTP---PDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIV-NLP 84 (208)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~---~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i-~l~ 84 (208)
.+.....++..++++..+ .|+++...+|+.|-||+..|++||.+|...+. .-+. ...+| ...
T Consensus 129 ~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v------------~~~~--~~heI~~~~ 194 (516)
T KOG0511|consen 129 ARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDV------------MFYV--QGHEIEAHR 194 (516)
T ss_pred ccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhh------------hhcc--ccCchhhhh
Confidence 445556667777777543 49999999999999999999999999977664 2221 11234 233
Q ss_pred cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHH
Q 028462 85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFC 130 (208)
Q Consensus 85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c 130 (208)
+-+.+|+.+++|+|-..-.. -.+.-..|+.+..+|+...|....
T Consensus 195 v~~~~f~~flk~lyl~~na~--~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 195 VILSAFSPFLKQLYLNTNAE--WKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hhHhhhhHHHHHHHHhhhhh--hhhHHHHHHhhhhhccHHHhHHHH
Confidence 78899999999999762211 123336788899999988876543
No 25
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.51 E-value=0.0019 Score=41.40 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred ceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhc
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYH 99 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYt 99 (208)
.|+++..||+.|.+.+-++. .|..++.|+. +...+.. .|.++ ++..+++.+++|++.
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~------------~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAK-QSKTIKNMLE------------DLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHT-TSHHHHHHHH------------CTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHH-HhHHHHHHHh------------hhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 36788889999999999885 8889999886 3222222 79999 999999999999963
No 26
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.022 Score=43.77 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=69.2
Q ss_pred ceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcCCCCC--
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDP-- 104 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg~i~~-- 104 (208)
-+.+...||+.|.+-..++. .|..+.+++. ..+..... ..|.|+ +....|..+++|++.-.-+.
T Consensus 6 ~ikL~SsDG~~f~ve~~~a~-~s~~i~~~~~-----------~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~ 72 (162)
T KOG1724|consen 6 KIKLESSDGEIFEVEEEVAR-QSQTISAHMI-----------EDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPA 72 (162)
T ss_pred eEEEEccCCceeehhHHHHH-HhHHHHHHHH-----------HcCCCccC-CccccCccCHHHHHHHHHHHHHccccccc
Confidence 35667778988888877764 4555555554 12222121 478999 99999999999998733210
Q ss_pred ---------------------cccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q 028462 105 ---------------------ERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSL 138 (208)
Q Consensus 105 ---------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 138 (208)
-.+...+.+|+.+|++++++.|.++|++.+...+
T Consensus 73 ~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 73 NPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred ccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0123467889999999999999999999887755
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.39 E-value=0.039 Score=48.22 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=66.9
Q ss_pred eEEecCCCCcchHHHHHHhhcC--hHhhCCCCCChHHHHHhhhhcCCCCCCCce--EEeecCHHHHHHHHHHHhcCCCCC
Q 028462 29 IHLRPCYGPPLPAHKAVLYARS--TILVHPPPTFDAQLMRKYWSLGASSCETEI--VNLPISREELEALLDFLYHGSLDP 104 (208)
Q Consensus 29 v~~~~~~~~~i~aHk~iL~~~S--~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~--i~l~~~~~~~~~~l~~iYtg~i~~ 104 (208)
|.+.|| |+.|.-.+.-|+... .+|-+++. +.+...+... |-+.-+|+.|..+|.|+-||.+++
T Consensus 13 V~lNVG-GriF~Ts~qTL~~~~~DSffsaL~s------------~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~ 79 (465)
T KOG2714|consen 13 VKLNVG-GRIFETSAQTLTWIPRDSFFSALLS------------GRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA 79 (465)
T ss_pred EEEecC-ceEEecchhhhhcCCcchHHHHHhc------------CccccccCCCCceEecCCchHHHHHHHHHhcCCCCC
Confidence 678897 999999999997765 58888887 6665444333 555589999999999999999997
Q ss_pred cccHHHHHHHHHHHHhcChHHHHH
Q 028462 105 ERTEKHIAVLFFSAWNFDILYLSE 128 (208)
Q Consensus 105 ~~~~~~~~~ll~~A~~~~~~~l~~ 128 (208)
........++.-|.+||+.+|..
T Consensus 80 -~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 80 -SGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred -ccCchhhhhhhhhhhcCcHHHHH
Confidence 24444455666999999998876
No 28
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.07 E-value=0.029 Score=45.06 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=66.8
Q ss_pred ceEEecCCCCcchHHHHHHhhcCh--HhhCCCCCChHHHHHhhhhcCC--CCCCCceEEeecCHHHHHHHHHHHhcCCCC
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARST--ILVHPPPTFDAQLMRKYWSLGA--SSCETEIVNLPISREELEALLDFLYHGSLD 103 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S~--yF~~~f~~~~~~~~~~~~~~~~--~e~~~~~i~l~~~~~~~~~~l~~iYtg~i~ 103 (208)
=|.+.+| |+.|.-...-|..+-| -+.+||. ..++ ++.++..+-++-+|.-|+.+|.|+-.|++.
T Consensus 10 ~vrlnig-Gk~f~TTidTlv~rEPDSMLa~MF~-----------~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~ 77 (302)
T KOG1665|consen 10 MVRLNIG-GKKFCTTIDTLVIREPDSMLAAMFS-----------GRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP 77 (302)
T ss_pred hheeecC-CeEEEEeehhhcccCchHHHHHHHc-----------cCCCccccccCceEEEccCchhhHHHHHHHhcCcee
Confidence 3566665 7666665555555532 4566665 1112 344455666668999999999999999998
Q ss_pred CcccHHHHHHHHHHHHhcChHHHHHHHHH
Q 028462 104 PERTEKHIAVLFFSAWNFDILYLSEFCAH 132 (208)
Q Consensus 104 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~ 132 (208)
. .+.-++.+++..|++|++-.|++..+.
T Consensus 78 ~-~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 78 S-LSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred e-cCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 4 466789999999999999999988776
No 29
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.058 Score=39.55 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=70.4
Q ss_pred CceEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcC--CCC
Q 028462 27 PDIHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHG--SLD 103 (208)
Q Consensus 27 ~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg--~i~ 103 (208)
|-|.+..+||..|.+-+.+. .+|-..+.|+. ++.+++ -.+.++ +...+|..+++|+-.. +..
T Consensus 2 s~i~l~s~dge~F~vd~~iA-erSiLikN~l~-------------d~~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~s 66 (158)
T COG5201 2 SMIELESIDGEIFRVDENIA-ERSILIKNMLC-------------DSTACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLS 66 (158)
T ss_pred CceEEEecCCcEEEehHHHH-HHHHHHHHHhc-------------cccccC-CCCcccchhHHHHHHHHHHHHhccccCC
Confidence 45778888898888877654 57777777765 222232 346677 9999999999998542 111
Q ss_pred C---------------------cccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhh
Q 028462 104 P---------------------ERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSN 142 (208)
Q Consensus 104 ~---------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n 142 (208)
. ..+.+.+.++..+|+++.++.|.++|++.+...+...+
T Consensus 67 ede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 67 EDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred CccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 1 01234466788899999999999999998877665444
No 30
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=93.76 E-value=0.15 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCh---hhHHHHHHHHhcC
Q 028462 107 TEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKP---SNALNAFKNAVGC 153 (208)
Q Consensus 107 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~---~n~~~~~~~a~~~ 153 (208)
+...+.+|+.+|++++++.|...|++.+...+.. +..-.++.....+
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 6678999999999999999999999998776544 4444444443333
No 31
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=93.75 E-value=0.037 Score=47.03 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=101.9
Q ss_pred CCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 028462 35 YGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGSLDPERTEKHIAV 113 (208)
Q Consensus 35 ~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ 113 (208)
++..+.+|+.+|...|+.|..+.. ..-..+....+..- ++..++..+.+++|.+ ..-.-.......
T Consensus 34 ~~~~~~~~s~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ih 100 (319)
T KOG1778|consen 34 VKDLIPAHSLVLGPASPVFKKVLK------------QPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIH 100 (319)
T ss_pred hhhhhHHHHhcccccchHHHHHHh------------hhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHH
Confidence 367899999999999998876443 11111122344555 7888899999999988 322112334566
Q ss_pred HHHHHHhcChHHHHHHHHHHHHh-cCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcchhHHH
Q 028462 114 LFFSAWNFDILYLSEFCAHHILS-SLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSKEYKQ 181 (208)
Q Consensus 114 ll~~A~~~~~~~l~~~c~~~l~~-~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~~f~~ 181 (208)
++.+...+.++..+..|...+.. .++..+++..+..+..+....|..+....+...+...+.++.+..
T Consensus 101 ll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~ 169 (319)
T KOG1778|consen 101 LLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA 169 (319)
T ss_pred HHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence 77777889999999988888877 678899999999999999999999999999999998888766555
No 32
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.64 E-value=0.72 Score=35.56 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=69.5
Q ss_pred CCCCceEEecCCCCcchHHHHHHhhcChHhhC-CCCCChHHHHHhhhhcCCCCCCCceEEee-cCHHHHHHHHHHHhcCC
Q 028462 24 QTPPDIHLRPCYGPPLPAHKAVLYARSTILVH-PPPTFDAQLMRKYWSLGASSCETEIVNLP-ISREELEALLDFLYHGS 101 (208)
Q Consensus 24 ~~~~Dv~~~~~~~~~i~aHk~iL~~~S~yF~~-~f~~~~~~~~~~~~~~~~~e~~~~~i~l~-~~~~~~~~~l~~iYtg~ 101 (208)
|...=|.+.|| |..|---|.-|+--+.-|-. +.+ .-...+. .+....-.+- -+|.-|..+|.|+-+|.
T Consensus 18 g~s~wVRlNVG-Gt~f~TtktTl~rdp~sFl~rl~q--------~~~~l~s-drDetGAYlIDRDP~~FgpvLNylRhgk 87 (210)
T KOG2715|consen 18 GVSLWVRLNVG-GTVFLTTKTTLPRDPKSFLYRLCQ--------REKDLPS-DRDETGAYLIDRDPFYFGPVLNYLRHGK 87 (210)
T ss_pred CceEEEEEecC-CEEEEeeeeccccCcHHHHHHHHh--------cccCCCC-CccccCceEeccCcchHHHHHHHHhcch
Confidence 33345778887 87777777777766644432 222 0000111 1111223333 78999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 028462 102 LDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSS 137 (208)
Q Consensus 102 i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 137 (208)
+.+ +.-.-.+++.-|++|.++.|..+..+.|...
T Consensus 88 lvl--~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 88 LVL--NKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhh--hhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 987 6666678999999999999999999888764
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=76.38 E-value=1 Score=38.19 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=38.5
Q ss_pred cCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHHHhhcch
Q 028462 137 SLKPSNALNAFKNAVGCSHRALLEAVLDFIVENMEEIAFSK 177 (208)
Q Consensus 137 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~i~~~~ 177 (208)
.++++|++.++--+....++.|.+.|+.|+..|+.+|..++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 58999999999999999999999999999999999998865
No 34
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.92 E-value=3.3 Score=35.06 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=57.2
Q ss_pred ceEEecCCCCcchHHHHHHhhcC-hHhhCCCCCChHHHHHhhhhcCCC---CCCCceEEee--cCHHHHHHHHHHHhcCC
Q 028462 28 DIHLRPCYGPPLPAHKAVLYARS-TILVHPPPTFDAQLMRKYWSLGAS---SCETEIVNLP--ISREELEALLDFLYHGS 101 (208)
Q Consensus 28 Dv~~~~~~~~~i~aHk~iL~~~S-~yF~~~f~~~~~~~~~~~~~~~~~---e~~~~~i~l~--~~~~~~~~~l~~iYtg~ 101 (208)
-++..+ ++..|-+.+.+|.+.- .-.-.||. +++. .+...+..+. ++..+|+++|+|--+|.
T Consensus 97 ~~t~lv-d~~rf~v~q~llt~~p~Tmlg~mf~------------~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~ 163 (438)
T KOG3840|consen 97 KVCLLV-DQTRFLVSQRLLTSKPDTMLGRMFS------------MGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGT 163 (438)
T ss_pred ceEEEe-eeEEEEeeeeeecCCcchhhhhhhc------------ccccccCCCcCCceehhcchhHHHHHHHHHHHhcCc
Confidence 455566 5778888888886553 23445555 3321 1122355665 99999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcChH
Q 028462 102 LDPERTEKHIAVLFFSAWNFDIL 124 (208)
Q Consensus 102 i~~~~~~~~~~~ll~~A~~~~~~ 124 (208)
+.- .+.-++.+|-.+++++.++
T Consensus 164 iRC-P~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 164 MRC-PSSVSVSELREACDYLLVP 185 (438)
T ss_pred eeC-CCCCchHHHHhhcceEEee
Confidence 884 2566888899999988764
No 35
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=64.98 E-value=11 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 028462 140 PSNALNAFKNAVGCSHRALLEAVLDFIVEN 169 (208)
Q Consensus 140 ~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 169 (208)
.+++..++..|..++...|.+.|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 788999999999999999999999999875
No 36
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=60.09 E-value=44 Score=22.17 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=37.8
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHhcC------------ChhhHHHHHHHHhc--CChHHHHHHHHHHHHhcH
Q 028462 113 VLFFSAWNFDILYLSEFCAHHILSSL------------KPSNALNAFKNAVG--CSHRALLEAVLDFIVENM 170 (208)
Q Consensus 113 ~ll~~A~~~~~~~l~~~c~~~l~~~l------------~~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~ 170 (208)
+++.+|+.|+.+.|...|.+++..+. +.+....++.--.. .+-..+.+++..|+..+.
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 56778899999999999999876542 22222222222111 234667888888888775
No 37
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=57.50 E-value=16 Score=29.48 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=41.4
Q ss_pred eEEeecCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHH
Q 028462 80 IVNLPISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHH 133 (208)
Q Consensus 80 ~i~l~~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~ 133 (208)
..-+.-+...|+-++.|+-+-...++.+..++..|...|++|+++.+.....+-
T Consensus 52 ~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 52 RYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred cEEEcCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 334446778999999999995655544557899999999999999777765543
No 38
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=54.87 E-value=21 Score=24.15 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcC------------ChhhHHHHHHHHhc--CChHHHHHHHHHHHHhcHH
Q 028462 112 AVLFFSAWNFDILYLSEFCAHHILSSL------------KPSNALNAFKNAVG--CSHRALLEAVLDFIVENME 171 (208)
Q Consensus 112 ~~ll~~A~~~~~~~l~~~c~~~l~~~l------------~~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 171 (208)
.+++.+|..|+.+.|...|.+++..+. ..+....++..-.. .+-..+.+++..|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468899999999999999999997643 22333333332211 3445788999999988865
No 39
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=53.52 E-value=46 Score=30.12 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=31.2
Q ss_pred cCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcH
Q 028462 137 SLKPSNALNAFKNAVGCSHRALLEAVLDFIVENM 170 (208)
Q Consensus 137 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 170 (208)
.+.++|++..+..|.+|....|.+.|++|+..+.
T Consensus 184 ~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l 217 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKYLVPALERQCVKFLRKNL 217 (521)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999998864
No 40
>PHA02790 Kelch-like protein; Provisional
Probab=50.14 E-value=36 Score=30.66 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCh------hhH--HHHHHHH--hc---CChH
Q 028462 90 LEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKP------SNA--LNAFKNA--VG---CSHR 156 (208)
Q Consensus 90 ~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~------~n~--~~~~~~a--~~---~~~~ 156 (208)
.+...+|+-. .+ +..|..+++.+|+.|++++|.+.+.+|+.++... +.- +.+...- .. .+-.
T Consensus 109 ~~~C~~fL~~-~l----~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd~L~v~~Ee 183 (480)
T PHA02790 109 IYTCINFILR-DF----RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESDELNVPDED 183 (480)
T ss_pred HHHHHHHHHh-hC----CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccccCCCccHH
Confidence 3444556632 23 6689999999999999999999999988775322 110 0111110 11 2446
Q ss_pred HHHHHHHHHHHh
Q 028462 157 ALLEAVLDFIVE 168 (208)
Q Consensus 157 ~L~~~~~~~i~~ 168 (208)
.+.+++.+|+..
T Consensus 184 ~V~eav~~Wl~~ 195 (480)
T PHA02790 184 YVVDFVIKWYMK 195 (480)
T ss_pred HHHHHHHHHHHh
Confidence 788999999874
No 41
>PHA03098 kelch-like protein; Provisional
Probab=41.74 E-value=35 Score=30.89 Aligned_cols=63 Identities=8% Similarity=0.181 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCC------------hhhHHHHHHHHhc--CChHHHHHHHHHHHHhc
Q 028462 107 TEKHIAVLFFSAWNFDILYLSEFCAHHILSSLK------------PSNALNAFKNAVG--CSHRALLEAVLDFIVEN 169 (208)
Q Consensus 107 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~------------~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~ 169 (208)
+.+|+.+++.+|..|+++.|.+.|.++|..+.. .+....++.--.. .+-..+.+++++|+..+
T Consensus 106 ~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~ 182 (534)
T PHA03098 106 DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK 182 (534)
T ss_pred CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC
Confidence 778999999999999999999999999876432 2222222211111 24456888888888554
No 42
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=38.15 E-value=32 Score=30.49 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q 028462 107 TEKHIAVLFFSAWNFDILYLSEFCAHHILSSL 138 (208)
Q Consensus 107 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 138 (208)
+.+++..-+.+|.+||+..++.-|.+|+..++
T Consensus 171 spkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 171 SPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999997654
No 43
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=36.86 E-value=48 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCCceEEecCCCCcchHHHHHHhh
Q 028462 13 FLDGFDASLREQTPPDIHLRPCYGPPLPAHKAVLYA 48 (208)
Q Consensus 13 ~~~~~~~l~~~~~~~Dv~~~~~~~~~i~aHk~iL~~ 48 (208)
+..++..+...-... |++.+.+...-.|||.||+.
T Consensus 86 ~~~~l~~L~~~~~~~-v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 86 FQEGLERLAELAREG-VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred HHHHHHHHHHHHcCC-eEEEEEecChhcCcHHHHHH
Confidence 344455444433333 99999877789999999974
No 44
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=35.83 E-value=1.8e+02 Score=21.55 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=59.8
Q ss_pred EEee-cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHH
Q 028462 81 VNLP-ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALL 159 (208)
Q Consensus 81 i~l~-~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~ 159 (208)
..+. .++.-...+|+.+....- + +... +-.+...|++ .+.-+.+-....+..|...+.....
T Consensus 26 ~d~~~~~~~Q~~~FL~~L~~~~~-l--~~~~---l~~Ld~~y~l-----------~~s~NaEI~~rW~~l~i~~~~~~~~ 88 (143)
T PF09127_consen 26 EDIKDWSSNQWVVFLDQLLEPKP-L--SPEK---LQALDKVYKL-----------SNSKNAEIRFRWLRLAIKAKYEPAL 88 (143)
T ss_dssp GGGTT--HHHHHHHHHHHHTCCG----CHHH---HHHHHHHHCH-----------CT-SSHHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHhCCHHHHHHHHHHhccCCC-C--CHHH---HHHHHHHhCC-----------CCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 3444 667667777777722111 1 2222 2222333332 2334555567888999999999999
Q ss_pred HHHHHHHHhcHHHhhcchhHHHHHH-hCCchHHHHHHHH
Q 028462 160 EAVLDFIVENMEEIAFSKEYKQFVR-AFPNHSVRITQAF 197 (208)
Q Consensus 160 ~~~~~~i~~~~~~i~~~~~f~~~~~-~~~~l~v~i~~~~ 197 (208)
+.+.+|+...-+.=+-.|-|..+.. ...++..++|+..
T Consensus 89 ~~v~~fL~~~GRmKfvrPlYr~L~~~~~~~~A~~~F~~~ 127 (143)
T PF09127_consen 89 PQVEEFLGSQGRMKFVRPLYRALAKPEGRDLAKETFEKA 127 (143)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999999888766666788888777 5667777777654
No 45
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=34.37 E-value=1.7e+02 Score=21.60 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=40.3
Q ss_pred cCHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHH
Q 028462 85 ISREELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLD 164 (208)
Q Consensus 85 ~~~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~ 164 (208)
++|+.|..+++.+..|.+.- ..+..++ ...+...-+++.++.-..+....+...|...|.+
T Consensus 40 i~~~~l~~li~l~~~~~Is~----~~ak~ll---------------~~~~~~~~~~~~ii~~~~l~~i~d~~el~~~v~~ 100 (148)
T PF02637_consen 40 ISPEHLAELINLLEDGKISK----KSAKELL---------------RELLENGKSPEEIIEENGLWQISDEEELEALVEE 100 (148)
T ss_dssp STHHHHHHHHHHHHTTSSGH----HHHHHHH---------------HHHHHHTS-HHHHHHHTT---B--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCH----HHHHHHH---------------HHHHHcCCCHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 78888888888888887643 3333332 2233334455555555555555555778888888
Q ss_pred HHHhcHHHh
Q 028462 165 FIVENMEEI 173 (208)
Q Consensus 165 ~i~~~~~~i 173 (208)
.+..|...+
T Consensus 101 vi~~n~~~v 109 (148)
T PF02637_consen 101 VIAENPKEV 109 (148)
T ss_dssp HHHC-HHHH
T ss_pred HHHHCHHHH
Confidence 888886655
No 46
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=29.04 E-value=3.7e+02 Score=24.01 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=54.0
Q ss_pred eEEecCCCCcchHHHHHHhhcChHhhCCCCCChHHHHHhhhhcCC-CCCCCceEEeecCHHHHHHHHHHHhcCCCCCccc
Q 028462 29 IHLRPCYGPPLPAHKAVLYARSTILVHPPPTFDAQLMRKYWSLGA-SSCETEIVNLPISREELEALLDFLYHGSLDPERT 107 (208)
Q Consensus 29 v~~~~~~~~~i~aHk~iL~~~S~yF~~~f~~~~~~~~~~~~~~~~-~e~~~~~i~l~~~~~~~~~~l~~iYtg~i~~~~~ 107 (208)
+++.+. |+.|.-.|.-|.-.. .+++++.+ .++ -...+.+.-++-+|+.|+.+|.|--||.+.. +
T Consensus 42 lvlNvS-GrRFeTWknTLeryP---dTLLGSsE---------keFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHy--P 106 (632)
T KOG4390|consen 42 LVLNVS-GRRFETWKNTLERYP---DTLLGSSE---------KEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHY--P 106 (632)
T ss_pred EEEecc-ccchhHHHhHHHhCc---hhhhCCcc---------hheeecCCcccccccCChHHHHHHHHHhhcCcccC--c
Confidence 455664 999999998886433 44444100 011 1122233344479999999999999999987 5
Q ss_pred HHHHHHHHH--HHHhcChHHHHHHHH
Q 028462 108 EKHIAVLFF--SAWNFDILYLSEFCA 131 (208)
Q Consensus 108 ~~~~~~ll~--~A~~~~~~~l~~~c~ 131 (208)
......-+. +|.+=-+|+|.-.|+
T Consensus 107 R~ECi~AyDeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 107 RHECISAYDEELAFYGLVPELIGDCC 132 (632)
T ss_pred hHHHHHHhhhhhhHhcccHHHHhhhh
Confidence 554443332 455555678776664
No 47
>PHA02713 hypothetical protein; Provisional
Probab=28.56 E-value=1.1e+02 Score=28.28 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred cCChhhHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 028462 137 SLKPSNALNAFKNAVGCSHRALLEAVLDFIVEN 169 (208)
Q Consensus 137 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 169 (208)
.++.+|+..++..|.......|.+.|.+|+.++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999875
No 48
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.63 E-value=1e+02 Score=29.57 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHH
Q 028462 87 REELEALLDFLYHGSLDPERTEKHIAVLFFSAWNFDILYLSEFCAHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFI 166 (208)
Q Consensus 87 ~~~~~~~l~~iYtg~i~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i 166 (208)
...+..+|+|+-|....+ .++-+..+-.+|.+|.-+. ..-.+-.+.+++.|..+..++++-.+.+++
T Consensus 403 k~IV~elLqYL~tAd~si--reeivlKvAILaEKyAtDy-----------~WyVdviLqLiriagd~vsdeVW~RvvQiV 469 (938)
T KOG1077|consen 403 KQIVAELLQYLETADYSI--REEIVLKVAILAEKYATDY-----------SWYVDVILQLIRIAGDYVSDEVWYRVVQIV 469 (938)
T ss_pred HHHHHHHHHHHhhcchHH--HHHHHHHHHHHHHHhcCCc-----------chhHHHHHHHHHHhcccccHHHHHHhheeE
Confidence 456667788887766655 6777777777777775432 111233445555555555555554444443
Q ss_pred H
Q 028462 167 V 167 (208)
Q Consensus 167 ~ 167 (208)
+
T Consensus 470 v 470 (938)
T KOG1077|consen 470 V 470 (938)
T ss_pred e
Confidence 3
No 49
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=23.74 E-value=5.4e+02 Score=23.13 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCCCCCceEEeecCHHHHHHHHHHHhcCCCC
Q 028462 72 GASSCETEIVNLPISREELEALLDFLYHGSLD 103 (208)
Q Consensus 72 ~~~e~~~~~i~l~~~~~~~~~~l~~iYtg~i~ 103 (208)
.|+.+..+.|.|..+++.+..=+.=++|+...
T Consensus 202 KMSKS~~n~I~L~Ds~~~I~kKI~~A~TDs~~ 233 (431)
T PRK12284 202 KMSKSYDNTIPLFAPREELKKAIFSIVTDSRA 233 (431)
T ss_pred cccCCCCCEeeecCCHHHHHHHHhcCCCCCCC
Confidence 56666666787777787777777779997654
No 50
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.98 E-value=1.7e+02 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.3
Q ss_pred cCChhhHHHHHHHHhcCChHHHHHHHHHHHHh
Q 028462 137 SLKPSNALNAFKNAVGCSHRALLEAVLDFIVE 168 (208)
Q Consensus 137 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~ 168 (208)
.+..+..++++.+|.+|+..+|..+..+|+.+
T Consensus 112 ~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~ 143 (620)
T KOG4350|consen 112 GVEEDILLDYLSLAHRYGFIQLETAISEYLKE 143 (620)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45677789999999999999999999999876
No 51
>PHA02956 hypothetical protein; Provisional
Probab=21.13 E-value=84 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHhcChHHHHHHHHHHHHhcCChhhH
Q 028462 118 AWNFDILYLSEFCAHHILSSLKPSNA 143 (208)
Q Consensus 118 A~~~~~~~l~~~c~~~l~~~l~~~n~ 143 (208)
...+|++.|+++|..++...+..+.|
T Consensus 149 ~hl~gvq~lkdicik~i~~tv~kd~~ 174 (189)
T PHA02956 149 NHLVGVQKLKDICIKMINKTVKKDDC 174 (189)
T ss_pred HHHHccccHHHHHHHHHHhhhchhhh
Confidence 45689999999999999888777665
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=21.02 E-value=2.5e+02 Score=18.33 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=30.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCChHHHHHHHHHHHHhcHH
Q 028462 131 AHHILSSLKPSNALNAFKNAVGCSHRALLEAVLDFIVENME 171 (208)
Q Consensus 131 ~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~ 171 (208)
.+|+ .++.+..+.++..|...+...|.+.|-++|+....
T Consensus 6 ~~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 6 QEFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIK 44 (78)
T ss_dssp HHHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT
T ss_pred HHHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc
Confidence 3444 56778889999999999999999999999988765
No 53
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=20.35 E-value=4.9e+02 Score=23.70 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=35.4
Q ss_pred CceEEeecCHHHHHHHHHHHhcCCCCCcccHH-HHHHHHHHHHhcChHHHH-HHHHH
Q 028462 78 TEIVNLPISREELEALLDFLYHGSLDPERTEK-HIAVLFFSAWNFDILYLS-EFCAH 132 (208)
Q Consensus 78 ~~~i~l~~~~~~~~~~l~~iYtg~i~~~~~~~-~~~~ll~~A~~~~~~~l~-~~c~~ 132 (208)
.++.-++-+|.+|..+++|.+||.+.. ..+ -.....+=-++++++... +-|+.
T Consensus 80 ~~EyfFDR~P~~F~~Vl~fYrtGkLH~--p~~vC~~~F~eEL~yWgI~~~~le~CC~ 134 (477)
T KOG3713|consen 80 TNEYFFDRHPGAFAYVLNFYRTGKLHV--PADVCPLSFEEELDYWGIDEAHLESCCW 134 (477)
T ss_pred cCeeeeccChHHHHHHHHHHhcCeecc--ccccchHHHHHHHHHhCCChhhhhHHhH
Confidence 456777789999999999999999986 322 223333344677776432 34443
Done!