Query 028463
Match_columns 208
No_of_seqs 235 out of 1692
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 11:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 1.8E-25 3.8E-30 177.0 12.6 116 87-205 12-136 (137)
2 PRK11597 heat shock chaperone 99.9 1.1E-24 2.3E-29 173.4 13.1 97 107-206 31-135 (142)
3 COG0071 IbpA Molecular chapero 99.9 6.3E-24 1.4E-28 169.4 14.3 98 107-205 39-145 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 6.4E-22 1.4E-26 146.0 10.9 83 110-193 1-92 (92)
5 cd06497 ACD_alphaA-crystallin_ 99.9 2.1E-21 4.6E-26 142.2 11.5 81 112-193 4-86 (86)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 4.1E-21 8.8E-26 143.3 12.3 93 112-205 1-101 (102)
7 cd06471 ACD_LpsHSP_like Group 99.9 4.5E-21 9.8E-26 141.4 11.2 83 109-193 1-93 (93)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.6E-21 1.4E-25 138.6 11.1 81 112-193 1-83 (83)
9 cd06479 ACD_HspB7_like Alpha c 99.9 5.1E-21 1.1E-25 138.8 10.3 79 112-193 2-81 (81)
10 cd06498 ACD_alphaB-crystallin_ 99.9 9.5E-21 2.1E-25 138.2 11.3 81 113-194 2-84 (84)
11 cd06470 ACD_IbpA-B_like Alpha- 99.8 2.2E-20 4.7E-25 137.6 11.7 82 109-193 1-90 (90)
12 cd06475 ACD_HspB1_like Alpha c 99.8 1.9E-20 4.2E-25 137.1 11.3 81 111-192 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.8 4.3E-20 9.3E-25 134.5 11.0 80 113-193 2-83 (83)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 1.7E-19 3.6E-24 131.5 11.0 78 114-192 3-82 (83)
15 cd06526 metazoan_ACD Alpha-cry 99.8 2.6E-19 5.7E-24 129.7 10.2 76 117-193 6-83 (83)
16 cd06481 ACD_HspB9_like Alpha c 99.8 3.3E-19 7.1E-24 130.9 9.9 78 115-193 4-87 (87)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 1.1E-18 2.3E-23 128.2 10.3 76 116-192 6-86 (87)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 1.5E-18 3.2E-23 124.7 10.4 81 112-193 1-88 (88)
19 KOG0710 Molecular chaperone (s 99.8 7.7E-19 1.7E-23 146.7 7.9 165 29-208 13-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 4E-16 8.7E-21 115.5 10.1 79 114-193 11-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.6 4.5E-14 9.7E-19 97.7 10.8 80 113-193 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.6 2.8E-14 6.1E-19 117.1 11.4 97 109-206 63-162 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.5E-11 3.2E-16 87.2 9.1 70 114-196 2-71 (78)
24 cd06463 p23_like Proteins cont 99.0 3.4E-09 7.4E-14 74.7 9.3 75 114-196 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 3.6E-09 7.8E-14 86.7 10.4 78 107-197 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 4.9E-08 1.1E-12 69.8 8.7 77 112-196 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 5E-06 1.1E-10 57.9 12.4 77 109-193 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 2.2E-05 4.7E-10 59.2 10.6 78 109-195 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.1 1.8E-05 3.9E-10 70.0 8.7 65 117-192 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 5.2E-05 1.1E-09 54.5 9.3 76 112-195 1-76 (84)
31 cd06468 p23_CacyBP p23_like do 97.9 0.00024 5.2E-09 51.6 10.7 79 110-196 3-85 (92)
32 cd06467 p23_NUDC_like p23_like 97.8 0.00018 3.9E-09 51.4 8.9 74 112-196 2-77 (85)
33 cd06488 p23_melusin_like p23_l 97.7 0.00048 1E-08 50.0 10.1 79 110-196 2-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00053 1.2E-08 49.5 9.7 76 111-197 1-78 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.4 0.0019 4E-08 47.9 9.4 77 107-195 4-82 (93)
36 cd00237 p23 p23 binds heat sho 97.3 0.0044 9.6E-08 47.0 10.8 78 109-196 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.6 0.015 3.2E-07 52.7 9.5 80 108-195 156-235 (356)
38 cd06492 p23_mNUDC_like p23-lik 96.5 0.045 9.8E-07 39.8 9.5 73 113-196 3-79 (87)
39 KOG1309 Suppressor of G2 allel 96.4 0.015 3.3E-07 48.1 7.2 79 108-194 3-81 (196)
40 cd06495 p23_NUDCD3_like p23-li 96.3 0.091 2E-06 39.6 10.8 81 107-195 3-86 (102)
41 cd06490 p23_NCB5OR p23_like do 96.3 0.079 1.7E-06 38.4 10.0 76 111-196 1-80 (87)
42 KOG3158 HSP90 co-chaperone p23 90.9 0.92 2E-05 37.4 6.5 81 107-197 6-86 (180)
43 KOG2265 Nuclear distribution p 88.8 4.3 9.2E-05 33.6 8.9 79 107-196 17-97 (179)
44 COG5091 SGT1 Suppressor of G2 79.6 1 2.2E-05 40.0 1.5 81 108-195 176-256 (368)
45 PF13349 DUF4097: Domain of un 77.7 26 0.00057 27.2 9.1 79 108-191 65-148 (166)
46 PRK10743 heat shock protein Ib 76.9 14 0.00031 29.0 7.2 42 134-196 37-79 (137)
47 KOG1667 Zn2+-binding protein M 71.9 19 0.00041 31.7 7.2 81 110-197 216-296 (320)
48 cd06482 ACD_HspB10 Alpha cryst 71.4 10 0.00023 27.5 4.8 34 161-196 9-42 (87)
49 PF14913 DPCD: DPCD protein fa 70.7 33 0.00072 28.8 8.1 77 107-195 85-170 (194)
50 PF00347 Ribosomal_L6: Ribosom 70.3 12 0.00025 25.8 4.7 47 131-193 2-48 (77)
51 cd06464 ACD_sHsps-like Alpha-c 64.1 16 0.00034 25.1 4.4 33 116-148 54-87 (88)
52 cd06471 ACD_LpsHSP_like Group 62.7 15 0.00033 26.2 4.2 30 118-147 62-91 (93)
53 cd06476 ACD_HspB2_like Alpha c 62.1 29 0.00063 24.8 5.6 32 161-194 8-39 (83)
54 cd06477 ACD_HspB3_Like Alpha c 62.0 32 0.00069 24.7 5.8 33 161-195 8-40 (83)
55 PF00011 HSP20: Hsp20/alpha cr 61.7 20 0.00043 25.8 4.8 36 118-153 55-91 (102)
56 KOG3260 Calcyclin-binding prot 60.7 26 0.00057 29.4 5.7 77 111-195 77-154 (224)
57 cd06526 metazoan_ACD Alpha-cry 60.6 21 0.00046 25.0 4.6 34 161-196 8-41 (83)
58 cd06470 ACD_IbpA-B_like Alpha- 60.0 25 0.00054 25.2 5.0 35 161-197 12-46 (90)
59 cd06497 ACD_alphaA-crystallin_ 59.8 37 0.0008 24.3 5.8 32 161-194 11-42 (86)
60 cd06469 p23_DYX1C1_like p23_li 58.7 31 0.00067 23.4 5.1 33 118-150 36-69 (78)
61 cd06478 ACD_HspB4-5-6 Alpha-cr 58.6 41 0.00088 23.8 5.8 32 161-194 8-39 (83)
62 PF04972 BON: BON domain; Int 57.9 19 0.00041 23.7 3.7 26 127-152 12-37 (64)
63 cd06479 ACD_HspB7_like Alpha c 57.6 29 0.00062 24.8 4.8 33 161-195 9-41 (81)
64 PRK11597 heat shock chaperone 56.8 39 0.00086 26.8 6.0 27 167-195 50-76 (142)
65 cd06472 ACD_ScHsp26_like Alpha 56.1 23 0.0005 25.3 4.2 31 117-147 59-90 (92)
66 cd00298 ACD_sHsps_p23-like Thi 54.4 29 0.00063 22.5 4.3 32 117-148 47-79 (80)
67 PF12992 DUF3876: Domain of un 54.4 46 0.001 24.7 5.6 42 107-148 24-70 (95)
68 COG0071 IbpA Molecular chapero 52.8 58 0.0013 25.4 6.4 42 133-195 42-83 (146)
69 PF01954 DUF104: Protein of un 52.1 14 0.00029 25.2 2.3 17 176-192 3-19 (60)
70 cd06463 p23_like Proteins cont 51.2 45 0.00098 22.3 5.0 36 117-152 40-76 (84)
71 cd06480 ACD_HspB8_like Alpha-c 48.9 37 0.00081 24.9 4.3 31 118-148 58-90 (91)
72 cd06481 ACD_HspB9_like Alpha c 48.4 50 0.0011 23.7 4.9 33 161-195 8-40 (87)
73 cd06498 ACD_alphaB-crystallin_ 47.5 77 0.0017 22.5 5.8 32 161-194 8-39 (84)
74 PTZ00027 60S ribosomal protein 45.2 86 0.0019 26.1 6.5 47 131-192 13-59 (190)
75 cd06475 ACD_HspB1_like Alpha c 45.2 67 0.0014 22.9 5.2 33 161-195 11-43 (86)
76 PRK05518 rpl6p 50S ribosomal p 43.5 1.2E+02 0.0025 25.1 7.0 45 131-192 13-57 (180)
77 COG4004 Uncharacterized protei 42.9 58 0.0013 24.2 4.5 34 111-148 26-59 (96)
78 TIGR03653 arch_L6P archaeal ri 41.5 48 0.001 27.1 4.4 44 131-192 7-51 (170)
79 COG0097 RplF Ribosomal protein 41.4 1.1E+02 0.0023 25.5 6.3 46 130-192 11-56 (178)
80 KOG3591 Alpha crystallins [Pos 40.7 57 0.0012 26.8 4.7 34 120-153 117-152 (173)
81 PTZ00179 60S ribosomal protein 40.0 1.2E+02 0.0026 25.2 6.6 47 131-192 12-58 (189)
82 PF08308 PEGA: PEGA domain; I 39.9 99 0.0022 20.6 5.2 39 110-148 26-66 (71)
83 TIGR03654 L6_bact ribosomal pr 38.6 1.5E+02 0.0033 24.2 6.9 44 131-192 11-54 (175)
84 PRK05498 rplF 50S ribosomal pr 35.8 94 0.002 25.4 5.3 44 131-192 12-55 (178)
85 CHL00140 rpl6 ribosomal protei 35.8 1.7E+02 0.0038 23.9 6.9 44 131-192 12-55 (178)
86 cd06466 p23_CS_SGT1_like p23_l 34.7 94 0.002 21.2 4.5 35 117-151 41-76 (84)
87 PRK10568 periplasmic protein; 34.5 2.4E+02 0.0052 23.4 7.6 25 127-151 73-97 (203)
88 PF13349 DUF4097: Domain of un 33.7 1.5E+02 0.0033 22.8 6.1 31 117-147 117-148 (166)
89 KOG3247 Uncharacterized conser 32.3 20 0.00044 33.6 0.8 78 108-197 3-82 (466)
90 cd06467 p23_NUDC_like p23_like 31.5 1.1E+02 0.0023 21.1 4.3 30 162-192 10-39 (85)
91 cd01759 PLAT_PL PLAT/LH2 domai 31.0 2.4E+02 0.0052 21.4 6.5 35 160-194 44-78 (113)
92 PF10988 DUF2807: Protein of u 30.9 78 0.0017 24.9 4.0 30 164-195 23-52 (181)
93 PRK00446 cyaY frataxin-like pr 30.5 71 0.0015 24.0 3.4 16 178-193 29-44 (105)
94 PF14730 DUF4468: Domain of un 29.3 2.1E+02 0.0046 20.4 6.0 18 176-193 68-85 (91)
95 PRK13726 conjugal transfer pil 28.5 1.5E+02 0.0032 24.7 5.3 51 132-193 131-181 (188)
96 PF01491 Frataxin_Cyay: Fratax 28.4 68 0.0015 24.1 3.0 18 176-193 30-47 (109)
97 PF05455 GvpH: GvpH; InterPro 28.3 2.1E+02 0.0046 23.7 6.1 39 116-154 134-172 (177)
98 PF08126 Propeptide_C25: Prope 28.0 2.2E+02 0.0048 23.8 6.4 61 108-170 8-73 (202)
99 cd00503 Frataxin Frataxin is a 27.5 56 0.0012 24.5 2.4 18 176-193 28-45 (105)
100 cd06494 p23_NUDCD2_like p23-li 26.6 1.3E+02 0.0029 21.9 4.2 29 162-191 17-45 (93)
101 TIGR03421 FeS_CyaY iron donor 26.5 55 0.0012 24.5 2.2 17 177-193 26-42 (102)
102 PF12624 Chorein_N: N-terminal 25.8 86 0.0019 23.5 3.2 22 127-148 18-39 (118)
103 PF07873 YabP: YabP family; I 25.5 51 0.0011 22.4 1.7 21 129-149 23-43 (66)
104 PF08845 SymE_toxin: Toxin Sym 24.7 1.1E+02 0.0024 20.5 3.2 21 126-146 35-56 (57)
105 KOG3413 Mitochondrial matrix p 23.8 36 0.00079 27.4 0.8 24 168-192 65-88 (156)
106 PRK11198 LysM domain/BON super 23.0 1.1E+02 0.0023 24.1 3.4 26 127-152 38-63 (147)
107 PF06964 Alpha-L-AF_C: Alpha-L 22.8 2.3E+02 0.005 22.5 5.4 27 167-194 150-176 (177)
108 cd06465 p23_hB-ind1_like p23_l 21.5 2E+02 0.0044 20.9 4.5 35 117-151 43-78 (108)
109 TIGR02856 spore_yqfC sporulati 21.0 73 0.0016 23.0 1.9 22 128-149 40-61 (85)
110 PF10988 DUF2807: Protein of u 20.8 97 0.0021 24.4 2.8 31 118-148 19-49 (181)
111 TIGR02892 spore_yabP sporulati 20.6 76 0.0016 23.0 1.9 21 129-149 22-42 (85)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=1.8e-25 Score=177.03 Aligned_cols=116 Identities=16% Similarity=0.324 Sum_probs=89.9
Q ss_pred HHHHHHHhhcCCCCCCCCC-CccceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc------cee
Q 028463 87 VLNFMDQMTESPFFSGTRG-GLRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EES 158 (208)
Q Consensus 87 l~~~md~lf~~~~~~~~~~-~~~p~~di~e-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~ 158 (208)
+...||++|+..+.....+ +..|++||.+ ++++|+|+++|||++++||+|++++|.|+|+|+++.+.++ |++
T Consensus 12 ~~~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~ 91 (137)
T PRK10743 12 SAIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIA 91 (137)
T ss_pred cccCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEE
Confidence 4455666666544322111 2458999995 8999999999999999999999999999999997665433 345
Q ss_pred eeEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCcc-cCCceeEe
Q 028463 159 VRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQV 205 (208)
Q Consensus 159 ~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~~-~~~~~i~I 205 (208)
++.|+|+|.||.+| +.+ +|+|+||||+|++||.+++ .+++.|.|
T Consensus 92 ~g~F~R~~~LP~~V-d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 92 ERNFERKFQLAENI-HVR--GANLVNGLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred CCEEEEEEECCCCc-ccC--cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence 67999999999999 888 4999999999999997433 34455555
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=1.1e-24 Score=173.43 Aligned_cols=97 Identities=14% Similarity=0.320 Sum_probs=82.2
Q ss_pred ccceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc------ceeeeEEEEEEECCCCCCCCcceE
Q 028463 107 LRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EESVRRYTSRIDLPEKLYRTDQIK 179 (208)
Q Consensus 107 ~~p~~di~e-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~Ik 179 (208)
..|++||+| ++++|+|+++|||++++||+|.+++|.|+|+|+++.+.++ |+.++.|+|+|.||.+| |.+ +
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~v-d~~--~ 107 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENM-EVS--G 107 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCc-ccC--c
Confidence 568999998 5789999999999999999999999999999997654333 44578999999999999 887 7
Q ss_pred EEEECCEEEEEEeccCc-ccCCceeEee
Q 028463 180 AEMKNGVLKVTVPKVKE-EERADVFQVK 206 (208)
Q Consensus 180 A~~~nGvL~I~lPK~~~-~~~~~~i~I~ 206 (208)
|+|+||||+|+|||.++ ..+++.|.|+
T Consensus 108 A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 108 ATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred CEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 99999999999999743 3456666664
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.3e-24 Score=169.36 Aligned_cols=98 Identities=39% Similarity=0.641 Sum_probs=85.5
Q ss_pred ccceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCc--c------ceeeeEEEEEEECCCCCCCCcce
Q 028463 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE--G------EESVRRYTSRIDLPEKLYRTDQI 178 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~--~------e~~~~~f~r~i~LP~~v~d~~~I 178 (208)
..|++||++++++|+|.++|||++++||+|.++++.|+|+|++..+.+ . +..++.|.|+|.||..| +++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v-~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc-cccce
Confidence 689999999999999999999999999999999999999999976322 1 44678999999999999 89999
Q ss_pred EEEEECCEEEEEEeccCccc-CCceeEe
Q 028463 179 KAEMKNGVLKVTVPKVKEEE-RADVFQV 205 (208)
Q Consensus 179 kA~~~nGvL~I~lPK~~~~~-~~~~i~I 205 (208)
+|+|+||+|+|+|||.++++ +++.|.|
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeec
Confidence 99999999999999987664 3344444
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.87 E-value=6.4e-22 Score=145.98 Aligned_cols=83 Identities=48% Similarity=0.672 Sum_probs=74.2
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEeeecccCcc--------ceeeeEEEEEEECCCCCCCCcceEE
Q 028463 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEG--------EESVRRYTSRIDLPEKLYRTDQIKA 180 (208)
Q Consensus 110 ~~di~e~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~~IkA 180 (208)
.+||+|++++|+|.++|||++++||+|++++ +.|+|+|++..+... ++.++.|.|+|.||.+| +.+.|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENA-DADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCC-CHHHCEE
Confidence 3799999999999999999999999999997 499999997654221 34577999999999999 9999999
Q ss_pred EEECCEEEEEEec
Q 028463 181 EMKNGVLKVTVPK 193 (208)
Q Consensus 181 ~~~nGvL~I~lPK 193 (208)
.|+||+|+|++||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.87 E-value=2.1e-21 Score=142.18 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=73.3
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEE-ECCEEEE
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 189 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~I 189 (208)
+|.+++++|.|.++|||++++||+|+++++.|+|+|++....++ ....+.|.|+|.||.+| |.++|+|.| +||+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~V-d~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNV-DQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCCEEEE
Confidence 68999999999999999999999999999999999997654333 33456899999999999 999999999 8999999
Q ss_pred EEec
Q 028463 190 TVPK 193 (208)
Q Consensus 190 ~lPK 193 (208)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.86 E-value=4.1e-21 Score=143.27 Aligned_cols=93 Identities=39% Similarity=0.694 Sum_probs=74.3
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc------ceeeeEEEEEEECCCCCCCCcceEEEEECC
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG------EESVRRYTSRIDLPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG 185 (208)
||.+++++|.|.++|||+.+++|+|+++++.|+|+|++...... +...+.|.++|.||.++ +.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEecCC
Confidence 78999999999999999999999999999999999998822222 23457999999999999 999999999999
Q ss_pred EEEEEEeccCcccC--CceeEe
Q 028463 186 VLKVTVPKVKEEER--ADVFQV 205 (208)
Q Consensus 186 vL~I~lPK~~~~~~--~~~i~I 205 (208)
+|+|++||....+. ++.|+|
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-E
T ss_pred EEEEEEEccccccCCCCeEEEe
Confidence 99999999977753 445554
No 7
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.86 E-value=4.5e-21 Score=141.40 Aligned_cols=83 Identities=34% Similarity=0.570 Sum_probs=74.3
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc----------ceeeeEEEEEEECCCCCCCCcce
Q 028463 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG----------EESVRRYTSRIDLPEKLYRTDQI 178 (208)
Q Consensus 109 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~v~d~~~I 178 (208)
+.+||+|++++|+|.++|||++++||+|.++++.|+|+|+++...+. |+.+++|.|+|.|| ++ +.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v-~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NV-DEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CC-CHHHC
Confidence 36899999999999999999999999999999999999998753221 34567999999999 68 89999
Q ss_pred EEEEECCEEEEEEec
Q 028463 179 KAEMKNGVLKVTVPK 193 (208)
Q Consensus 179 kA~~~nGvL~I~lPK 193 (208)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.85 E-value=6.6e-21 Score=138.63 Aligned_cols=81 Identities=19% Similarity=0.398 Sum_probs=72.3
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEE-ECCEEEE
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 189 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~I 189 (208)
+|.+++++|.|.++|||++++||+|+++++.|+|+|++....++ ....+.|.|+|.||.+| |.++|+|.| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEECCCCEEEE
Confidence 47889999999999999999999999999999999987643332 33456899999999999 999999999 7999999
Q ss_pred EEec
Q 028463 190 TVPK 193 (208)
Q Consensus 190 ~lPK 193 (208)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.85 E-value=5.1e-21 Score=138.81 Aligned_cols=79 Identities=18% Similarity=0.419 Sum_probs=73.1
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEE-ECCEEEEE
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVT 190 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~I~ 190 (208)
||.|++++|.|.++|||++++||+|++++|.|+|+|+++.+. +..+++|+|+|.||.+| |++.|+|.| +||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~v-d~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDV-DPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCc-CHHHeEEEecCCCEEEEE
Confidence 689999999999999999999999999999999999986443 45689999999999999 999999997 99999999
Q ss_pred Eec
Q 028463 191 VPK 193 (208)
Q Consensus 191 lPK 193 (208)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.85 E-value=9.5e-21 Score=138.19 Aligned_cols=81 Identities=17% Similarity=0.371 Sum_probs=72.4
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEE
Q 028463 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 190 (208)
Q Consensus 113 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~~-nGvL~I~ 190 (208)
+.+++++|.|.++|||++++||+|++++|.|+|+|++..+.+. ....+.|.|+|.||.+| |.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADV-DPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHcEEEeCCCCEEEEE
Confidence 5788999999999999999999999999999999987654433 34567899999999999 9999999995 9999999
Q ss_pred Eecc
Q 028463 191 VPKV 194 (208)
Q Consensus 191 lPK~ 194 (208)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 11
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.84 E-value=2.2e-20 Score=137.60 Aligned_cols=82 Identities=18% Similarity=0.487 Sum_probs=72.9
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-------ceeeeEEEEEEECCCCCCCCcceEE
Q 028463 109 RGWDAKETD-DALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-------EESVRRYTSRIDLPEKLYRTDQIKA 180 (208)
Q Consensus 109 p~~di~e~~-d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~IkA 180 (208)
|++||+|++ ++|+|.++|||+++++|+|.++++.|+|+|+++...+. |...+.|.|+|.||.++ +. ++|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~v-d~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHV-KV--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCc-eE--Cee
Confidence 679999975 99999999999999999999999999999998776532 34578999999999999 65 489
Q ss_pred EEECCEEEEEEec
Q 028463 181 EMKNGVLKVTVPK 193 (208)
Q Consensus 181 ~~~nGvL~I~lPK 193 (208)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=1.9e-20 Score=137.09 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=73.4
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEEE-CCEEE
Q 028463 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLK 188 (208)
Q Consensus 111 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~~-nGvL~ 188 (208)
.+|+|++++|.|.++|||+++++|+|.++++.|+|+|++...... ....+.|+|+|.||.+| |.++|+|.|+ ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~v-d~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGV-DPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCC-CHHHcEEEECCCCeEE
Confidence 489999999999999999999999999999999999998654322 34567999999999999 9999999997 99999
Q ss_pred EEEe
Q 028463 189 VTVP 192 (208)
Q Consensus 189 I~lP 192 (208)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=4.3e-20 Score=134.50 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=71.3
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEE
Q 028463 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 190 (208)
Q Consensus 113 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~~-nGvL~I~ 190 (208)
+.-++++|.|.++|||++++||+|+++++.|+|+|++....+. +...+.|+|+|.||.+| |.++|+|.|. ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDV-DPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCC-ChhhEEEEecCCCEEEEE
Confidence 3457899999999999999999999999999999998654332 45678999999999999 9999999995 9999999
Q ss_pred Eec
Q 028463 191 VPK 193 (208)
Q Consensus 191 lPK 193 (208)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.82 E-value=1.7e-19 Score=131.45 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=69.9
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccC-ccceeeeEEEEEEECCCCCCCCcceEEEE-ECCEEEEEE
Q 028463 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG-EGEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTV 191 (208)
Q Consensus 114 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~-~~e~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~I~l 191 (208)
.|++++|.|+++|||++++||+|.++++.|+|+|++..+. +.+...+.|+|+|.||.+| +.++|+|.| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~V-d~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGV-EHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-chheEEEEEcCCCEEEEEe
Confidence 4678999999999999999999999999999999987653 2344567999999999999 999999998 899999997
Q ss_pred e
Q 028463 192 P 192 (208)
Q Consensus 192 P 192 (208)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.81 E-value=2.6e-19 Score=129.71 Aligned_cols=76 Identities=28% Similarity=0.601 Sum_probs=69.7
Q ss_pred CCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCc-cceeeeEEEEEEECCCCCCCCcceEEEEEC-CEEEEEEec
Q 028463 117 DDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE-GEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLKVTVPK 193 (208)
Q Consensus 117 ~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~f~r~i~LP~~v~d~~~IkA~~~n-GvL~I~lPK 193 (208)
+++|.|.++||||+++||+|+++++.|+|+|+++...+ .+...+.|.|+|.||.+| |.+.|+|.|+| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCcEEEEEecC
Confidence 36999999999999999999999999999999876544 345678999999999999 99999999998 999999997
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.80 E-value=3.3e-19 Score=130.86 Aligned_cols=78 Identities=23% Similarity=0.545 Sum_probs=69.3
Q ss_pred EcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccc-----eeeeEEEEEEECCCCCCCCcceEEEE-ECCEEE
Q 028463 115 ETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGE-----ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLK 188 (208)
Q Consensus 115 e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e-----~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGvL~ 188 (208)
+.+++|.|.++|||++++||+|++++|.|+|+|++....+.+ ...+.|.|+|.||.+| |.+.|+|.| +||+|+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~V-d~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHV-DPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCc-ChHHeEEEeCCCceEE
Confidence 456899999999999999999999999999999976543321 3468999999999999 999999999 999999
Q ss_pred EEEec
Q 028463 189 VTVPK 193 (208)
Q Consensus 189 I~lPK 193 (208)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.79 E-value=1.1e-18 Score=128.23 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=68.7
Q ss_pred cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc----ceeeeEEEEEEECCCCCCCCcceEEEEECC-EEEEE
Q 028463 116 TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG----EESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLKVT 190 (208)
Q Consensus 116 ~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG-vL~I~ 190 (208)
++++|+|.++|||++++||+|+++++.|+|+|+++...+. ++.++.|.|+|.||.+| |.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGV-DEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCc-ChHHcEEEEcCCCEEEEe
Confidence 5789999999999999999999999999999998764432 46788999999999999 999999999887 99998
Q ss_pred Ee
Q 028463 191 VP 192 (208)
Q Consensus 191 lP 192 (208)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 87
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=1.5e-18 Score=124.75 Aligned_cols=81 Identities=44% Similarity=0.728 Sum_probs=74.1
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-------ceeeeEEEEEEECCCCCCCCcceEEEEEC
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-------EESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~IkA~~~n 184 (208)
++.|++++|.|.++|||+++++|+|++.++.|.|+|++...... +...+.|.++|.||..+ +.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV-DPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc-CHHHcEEEEeC
Confidence 47889999999999999999999999999999999998866442 34578999999999999 99999999999
Q ss_pred CEEEEEEec
Q 028463 185 GVLKVTVPK 193 (208)
Q Consensus 185 GvL~I~lPK 193 (208)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.7e-19 Score=146.69 Aligned_cols=165 Identities=35% Similarity=0.575 Sum_probs=117.8
Q ss_pred ccccccccccccccccCCCCCCCCccccccccCCCCccCCCCCCCCCCC-CCCChhHHHHHHHHHHhhcCCCC-C----C
Q 028463 29 TSASRFFNTNAVRQYDDGGDDRDLDIDRRSARSFPRRRDDFFSGNVFDP-FSPTRSLSQVLNFMDQMTESPFF-S----G 102 (208)
Q Consensus 29 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~d~~dP-f~~~r~l~~l~~~md~lf~~~~~-~----~ 102 (208)
.-..|..||++...+++.. .+..+..+.+.|....+|+ |.++.....+. |+....+.. . .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~d~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (196)
T KOG0710|consen 13 IEFERLSNTKKGEEAEDLG-----------KTSMSKLRLSGFRPELLDPWFEPLELPIPPN---DSVSAEPLSLRVRKPE 78 (196)
T ss_pred cccchhhhhhccchhhhhc-----------ccccccccccccccccccccccccccccccc---chhhcccccccccccc
Confidence 4567888888866555522 1222334555554545666 65544332222 222222211 0 0
Q ss_pred CCCCccceeeEEEcCCeEEEEEEcCCCCccceEEEEECC-EEEEEeeecccCcc----------ceeeeEEEEEEECCCC
Q 028463 103 TRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQN-TLVIRGEGGKEGEG----------EESVRRYTSRIDLPEK 171 (208)
Q Consensus 103 ~~~~~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~-~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~ 171 (208)
....+.++|+|.|..++|.+.++|||+++++|+|.++++ .|+|+|++..+.+. +...+.|.+++.||++
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 111467889999999999999999999999999999987 79999998876543 4456799999999999
Q ss_pred CCCCcceEEEEECCEEEEEEeccCcc-cCCceeEeecC
Q 028463 172 LYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQVKVD 208 (208)
Q Consensus 172 v~d~~~IkA~~~nGvL~I~lPK~~~~-~~~~~i~I~IE 208 (208)
+ +.+.|+|.|+||||+|++||..+. +++.+..|.|.
T Consensus 159 v-~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 159 V-DVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred c-cHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 9 999999999999999999998764 45677777763
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.68 E-value=4e-16 Score=115.47 Aligned_cols=79 Identities=14% Similarity=0.370 Sum_probs=71.1
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCcc-ceeeeEEEEEEECCCCCCCCcceEEEEE-CCEEEEEE
Q 028463 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVTV 191 (208)
Q Consensus 114 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~IkA~~~-nGvL~I~l 191 (208)
..++++|.|.+++.||++|||+|++.++.|+|+|+++....+ ....+.|.|+|.||.+| |.+.|+|.+. ||+|+|.+
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~V-d~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEV-DPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCC-CchhEEEEeCCCCeEEEEc
Confidence 456789999999999999999999999999999998876433 45578999999999999 9999999996 99999999
Q ss_pred ec
Q 028463 192 PK 193 (208)
Q Consensus 192 PK 193 (208)
|.
T Consensus 90 P~ 91 (91)
T cd06480 90 PQ 91 (91)
T ss_pred CC
Confidence 83
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.57 E-value=4.5e-14 Score=97.65 Aligned_cols=80 Identities=39% Similarity=0.697 Sum_probs=73.2
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 113 i~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
+.++++.|.|++++||+.+++|+|.+.++.|.|+|........+...+.|.+.+.||..+ +++.++|.|.+|+|+|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV-DPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCc-CHHHCEEEEECCEEEEEEc
Confidence 367889999999999999999999999999999999876555556678999999999999 9999999999999999999
Q ss_pred c
Q 028463 193 K 193 (208)
Q Consensus 193 K 193 (208)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.8e-14 Score=117.07 Aligned_cols=97 Identities=18% Similarity=0.387 Sum_probs=84.5
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCc-cceeeeEEEEEEECCCCCCCCcceEEEE-ECCE
Q 028463 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE-GEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGV 186 (208)
Q Consensus 109 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~f~r~i~LP~~v~d~~~IkA~~-~nGv 186 (208)
...++..++++|.|.+|+..|++|+|+|.+.++.|.|+|++++..+ .....+.|.|+|.||.+| |++.|++.+ .+|+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~v-dp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDV-DPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCC-ChhheEEeeCCCce
Confidence 3468888999999999999999999999999999999999988743 355688999999999999 999999999 9999
Q ss_pred EEEEEeccCcccC-CceeEee
Q 028463 187 LKVTVPKVKEEER-ADVFQVK 206 (208)
Q Consensus 187 L~I~lPK~~~~~~-~~~i~I~ 206 (208)
|+|.+||...... .+.|+|+
T Consensus 142 LtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 142 LTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEEccCCCCcCccceEEeEe
Confidence 9999999875542 4555555
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.31 E-value=1.5e-11 Score=87.21 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=65.2
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028463 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 114 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK 193 (208)
.++++.+.|.+++||+++++|+|.++++.|.|++. .|...+.||..| +++..+|.+++|.|.|+|+|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~------------~~~~~~~l~~~I-~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP------------PYLFELDLAAPI-DDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCC------------CEEEEEeCcccc-cccccEEEEeCCEEEEEEEe
Confidence 57889999999999999999999999999999882 688999999999 99999999999999999999
Q ss_pred cCc
Q 028463 194 VKE 196 (208)
Q Consensus 194 ~~~ 196 (208)
..+
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.01 E-value=3.4e-09 Score=74.68 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=67.2
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028463 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 114 ~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK 193 (208)
.++++.+.|.+.+||..+++++|.+.++.|.|++... ....|...+.|+..| +++...+.+++|.|.|+|+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~l~i~L~K 73 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-------GGKEYLLEGELFGPI-DPEESKWTVEDRKIEITLKK 73 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-------CCCceEEeeEccCcc-chhhcEEEEeCCEEEEEEEE
Confidence 5788999999999999999999999999999998743 123788889999999 99999999999999999999
Q ss_pred cCc
Q 028463 194 VKE 196 (208)
Q Consensus 194 ~~~ 196 (208)
..+
T Consensus 74 ~~~ 76 (84)
T cd06463 74 KEP 76 (84)
T ss_pred CCC
Confidence 865
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.00 E-value=3.6e-09 Score=86.74 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=63.6
Q ss_pred ccceeeEEEcCC-eEEEEEEcCCCCccc-eEEEEEC--CEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEE
Q 028463 107 LRRGWDAKETDD-ALNLSIDMPGLGKED-VRVSLEQ--NTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM 182 (208)
Q Consensus 107 ~~p~~di~e~~d-~y~l~vdLPG~~ked-I~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~ 182 (208)
..+.+++.+.++ .++|.++|||+++++ |+|.++. +.|+|.... +|.+++.||... ++.++|.|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~-----------~~~krv~L~~~~--~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE-----------KYLKRVALPWPD--PEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC-----------ceEeeEecCCCc--cceeeEEE
Confidence 456789998777 699999999999888 9999985 555554431 577899999764 79999999
Q ss_pred ECCEEEEEEeccCcc
Q 028463 183 KNGVLKVTVPKVKEE 197 (208)
Q Consensus 183 ~nGvL~I~lPK~~~~ 197 (208)
+||||+|++-+..+.
T Consensus 157 nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 157 NNGILEIRIRRTEES 171 (177)
T ss_pred eCceEEEEEeecCCC
Confidence 999999999887554
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.78 E-value=4.9e-08 Score=69.75 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.1
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~l 191 (208)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|.-.+.|+..| +++..++.+.+|.|.|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~vei~L 72 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPI-DPEQSKVSVLPTKVEITL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEeccccccc-CchhcEEEEeCeEEEEEE
Confidence 568899999999999999999999999999999987742 123688889999999 899999999999999999
Q ss_pred eccCc
Q 028463 192 PKVKE 196 (208)
Q Consensus 192 PK~~~ 196 (208)
.|..+
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99754
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.51 E-value=5e-06 Score=57.94 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=65.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCC--CccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCE
Q 028463 109 RGWDAKETDDALNLSIDMPGL--GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 186 (208)
Q Consensus 109 p~~di~e~~d~y~l~vdLPG~--~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv 186 (208)
|.+++.++++.+.|.+.+++. ++++|+|.+.++.|.|+...... ..|.-.+.|...| +++..++.+.++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I-~~~~s~~~~~~~~ 72 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEI-DPDESTWKVKDNK 72 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-B-ECCCEEEEEETTE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeE-cchhcEEEEECCE
Confidence 568999999999999999665 59999999999999999763322 3788888999999 9999999999999
Q ss_pred EEEEEec
Q 028463 187 LKVTVPK 193 (208)
Q Consensus 187 L~I~lPK 193 (208)
|.|+|.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.22 E-value=2.2e-05 Score=59.23 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=68.1
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEE
Q 028463 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188 (208)
Q Consensus 109 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~ 188 (208)
|+++++++.+.+.|.+.+||. ++++|.+..+.|.|++.... ....|.-.+.|...| +++..+..+.++.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~------~~~~y~~~~~L~~~I-~pe~s~~~v~~~kve 71 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG------GGKKYEFDLEFYKEI-DPEESKYKVTGRQIE 71 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC------CCeeEEEEeEhhhhc-cccccEEEecCCeEE
Confidence 568899999999999999998 88999999999999986321 123577788999999 999999999999999
Q ss_pred EEEeccC
Q 028463 189 VTVPKVK 195 (208)
Q Consensus 189 I~lPK~~ 195 (208)
|+|.|..
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.07 E-value=1.8e-05 Score=70.01 Aligned_cols=65 Identities=26% Similarity=0.518 Sum_probs=59.0
Q ss_pred CCeEEEEEEcCCC-CccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEE--ECCEEEEEEe
Q 028463 117 DDALNLSIDMPGL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM--KNGVLKVTVP 192 (208)
Q Consensus 117 ~d~y~l~vdLPG~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~--~nGvL~I~lP 192 (208)
.+.++|+|+|||+ +..+|+|.|.+..|.|..... .|.-.+.||..| +.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V-~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPV-DEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcc-cCCCceEEEccCCCEEEEEEE
Confidence 4789999999999 889999999999999998732 588889999999 999999999 6689999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.05 E-value=5.2e-05 Score=54.48 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=65.4
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028463 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 112 di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~l 191 (208)
|++++++.+.|.+.++|+.+++++|.+.++.|.+++.... ...|.-.+.|...| +++..+.....+-+.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~-------~~~y~~~~~L~~~I-~p~~s~~~v~~~kiei~L 72 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS-------GNDYSLKLHLLHPI-VPEQSSYKILSTKIEIKL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC-------CCcEEEeeecCcee-cchhcEEEEeCcEEEEEE
Confidence 5678899999999999999999999999999999986421 11577788999999 899888888899999999
Q ss_pred eccC
Q 028463 192 PKVK 195 (208)
Q Consensus 192 PK~~ 195 (208)
.|..
T Consensus 73 ~K~~ 76 (84)
T cd06489 73 KKTE 76 (84)
T ss_pred EcCC
Confidence 9974
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.90 E-value=0.00024 Score=51.65 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=66.4
Q ss_pred eeeEEEcCCeEEEEEEcCCCCc---cceEEEEECCEEEEEeeecccCccceeeeEEEEEEE-CCCCCCCCcceEEEEECC
Q 028463 110 GWDAKETDDALNLSIDMPGLGK---EDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRID-LPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 110 ~~di~e~~d~y~l~vdLPG~~k---edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~IkA~~~nG 185 (208)
.+++.++++.+.|.+.+|+..+ ++++|.+..+.|.|++.... ...|.-.+. |-..| +++..+..+..+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~-------~~~~~~~~~~L~~~I-~~e~s~~~~~~~ 74 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN-------GKNYRFTINRLLKKI-DPEKSSFKVKTD 74 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC-------CcEEEEEehHhhCcc-CccccEEEEeCC
Confidence 4788999999999999999876 99999999999999985311 124666664 99999 999999999999
Q ss_pred EEEEEEeccCc
Q 028463 186 VLKVTVPKVKE 196 (208)
Q Consensus 186 vL~I~lPK~~~ 196 (208)
-+.|+|.|.++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.84 E-value=0.00018 Score=51.37 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=61.5
Q ss_pred eEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEEC-CEEEE
Q 028463 112 DAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLKV 189 (208)
Q Consensus 112 di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~n-GvL~I 189 (208)
.+.++++.+.|.+.+| ++.+++|+|.+..+.|.|+.... .+.-.-.|...| +++.....+.+ ..|.|
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~----------~~~l~~~L~~~I-~~~~s~w~~~~~~~v~i 70 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG----------EPLLDGELYAKV-KVDESTWTLEDGKLLEI 70 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC----------CceEcCcccCce-eEcCCEEEEeCCCEEEE
Confidence 5688999999999998 78999999999999999987520 112223689999 99998889999 99999
Q ss_pred EEeccCc
Q 028463 190 TVPKVKE 196 (208)
Q Consensus 190 ~lPK~~~ 196 (208)
+|+|.++
T Consensus 71 ~L~K~~~ 77 (85)
T cd06467 71 TLEKRNE 77 (85)
T ss_pred EEEECCC
Confidence 9999864
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.75 E-value=0.00048 Score=50.03 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=67.7
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEE
Q 028463 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKV 189 (208)
Q Consensus 110 ~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I 189 (208)
.+|++++++.+.|.+.+.|+.++++++.++.+.|.|...... ...|.-.+.|-.+| +++..+.....+-+.|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I-~~~~s~~~v~~~kvei 73 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVI-DVEKSSVNMLPTKVEI 73 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceE-ChhHcEEEecCcEEEE
Confidence 368899999999999999999999999999999988765322 12588888999999 8999888889999999
Q ss_pred EEeccCc
Q 028463 190 TVPKVKE 196 (208)
Q Consensus 190 ~lPK~~~ 196 (208)
+|.|.++
T Consensus 74 ~L~K~~~ 80 (87)
T cd06488 74 KLRKAEP 80 (87)
T ss_pred EEEeCCC
Confidence 9999754
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.70 E-value=0.00053 Score=49.50 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=60.8
Q ss_pred eeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECC-EEE
Q 028463 111 WDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLK 188 (208)
Q Consensus 111 ~di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG-vL~ 188 (208)
+++.++.+.+.|.+.+| |+.++||+|.+..+.|.|...... .+ -.-.|...| +++.-.-.+++| .|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~---------~~-~~g~L~~~I-~~d~Stw~i~~~~~l~ 69 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQA---------PL-LEGKLYSSI-DHESSTWIIKENKSLE 69 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCC---------eE-EeCcccCcc-cccCcEEEEeCCCEEE
Confidence 35688999999999996 999999999999999999763110 12 123789999 899988888777 799
Q ss_pred EEEeccCcc
Q 028463 189 VTVPKVKEE 197 (208)
Q Consensus 189 I~lPK~~~~ 197 (208)
|+|.|.++.
T Consensus 70 i~L~K~~~~ 78 (85)
T cd06493 70 VSLIKKDEG 78 (85)
T ss_pred EEEEECCCC
Confidence 999998643
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.42 E-value=0.0019 Score=47.93 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=63.4
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECC
Q 028463 107 LRRGWDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG 185 (208)
..+.+.+.++.+.+.|.+.+| |....||+|.+..+.|.|...... -+.. .|...| +++.-.-.+++|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~---------~l~G--~L~~~I-~~destWtled~ 71 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQE---------VLKG--KLFDSV-VADECTWTLEDR 71 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEE---------EEcC--cccCcc-CcccCEEEEECC
Confidence 456789999999999999999 899999999999999999863110 1111 689999 899999999888
Q ss_pred E-EEEEEeccC
Q 028463 186 V-LKVTVPKVK 195 (208)
Q Consensus 186 v-L~I~lPK~~ 195 (208)
- |.|+|.|..
T Consensus 72 k~l~I~L~K~~ 82 (93)
T cd06494 72 KLIRIVLTKSN 82 (93)
T ss_pred cEEEEEEEeCC
Confidence 5 899999974
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.34 E-value=0.0044 Score=46.96 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=63.3
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEE
Q 028463 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188 (208)
Q Consensus 109 p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~ 188 (208)
|.+++.+..+.+.|+|.+|+ .++++|.++.+.|.++|... + ...|.-.+.|-..| +++.-+.....--+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-~------g~~y~~~l~l~~~I-~pe~Sk~~v~~r~ve 71 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-D------NVKIYNEIELYDRV-DPNDSKHKRTDRSIL 71 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-C------CcEEEEEEEeeccc-CcccCeEEeCCceEE
Confidence 67889999999999999998 58999999999999998532 1 11466778999999 888866666666788
Q ss_pred EEEeccCc
Q 028463 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|.|.|.++
T Consensus 72 ~~L~K~~~ 79 (106)
T cd00237 72 CCLRKGKE 79 (106)
T ss_pred EEEEeCCC
Confidence 89998754
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.61 E-value=0.015 Score=52.66 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028463 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 187 (208)
Q Consensus 108 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL 187 (208)
....|++++++.+.|.|.+.|+.+++++|.+..+.|.|+...... ..|.-.+.|-..| +++..+....-.-+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~-------~~y~~~~~L~~~I-~p~~s~~~v~~~Ki 227 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE-------DAYHLQPRLFGKI-IPDKCKYEVLSTKI 227 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC-------cceeecccccccc-cccccEEEEecceE
Confidence 356799999999999999999999999999999999998754211 2466678999999 89998888888899
Q ss_pred EEEEeccC
Q 028463 188 KVTVPKVK 195 (208)
Q Consensus 188 ~I~lPK~~ 195 (208)
.|+|.|..
T Consensus 228 ei~l~K~~ 235 (356)
T PLN03088 228 EIRLAKAE 235 (356)
T ss_pred EEEEecCC
Confidence 99998875
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.45 E-value=0.045 Score=39.84 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=56.9
Q ss_pred EEEcCCeEEEEEEcC-C--CCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECC-EEE
Q 028463 113 AKETDDALNLSIDMP-G--LGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLK 188 (208)
Q Consensus 113 i~e~~d~y~l~vdLP-G--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nG-vL~ 188 (208)
+.++.+++.|++.+| | .+..||+|.+..+.|.|....+. .+ -.-.|...| +++.-.-.+++| .|.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~---------~~-i~G~L~~~V-~~des~Wtled~~~l~ 71 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP---------PI-IDGELYNEV-KVEESSWLIEDGKVVT 71 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc---------eE-EeCcccCcc-cccccEEEEeCCCEEE
Confidence 467788899999996 3 78999999999999998664211 11 112588999 899988889886 899
Q ss_pred EEEeccCc
Q 028463 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|+|-|..+
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99999754
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.37 E-value=0.015 Score=48.11 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=62.8
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028463 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 187 (208)
Q Consensus 108 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL 187 (208)
...+|+++++...+|.+-.+|+.++||.|.+.+++|.|..+..... .|.-...|-..| .++...-+.----+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~-------~~~l~~~L~~~I-~pe~~s~k~~stKV 74 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGS-------EYNLQLKLYHEI-IPEKSSFKVFSTKV 74 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCch-------hhhhhHHhcccc-cccceeeEeeeeeE
Confidence 4568999999999999999999999999999999999987754221 344445577777 67777666666777
Q ss_pred EEEEecc
Q 028463 188 KVTVPKV 194 (208)
Q Consensus 188 ~I~lPK~ 194 (208)
+|+|+|.
T Consensus 75 EI~L~K~ 81 (196)
T KOG1309|consen 75 EITLAKA 81 (196)
T ss_pred EEEeccc
Confidence 8888884
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.34 E-value=0.091 Score=39.59 Aligned_cols=81 Identities=12% Similarity=0.286 Sum_probs=62.3
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEEC
Q 028463 107 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~n 184 (208)
....+.+.++.+.+.|++.+| |. +..+|+|.+..+.|.|.-....... .-+.. .|+..| +.+.-...+++
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~-----~~i~G--~L~~~V-~~des~Wtled 74 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEK-----VLMEG--EFTHKI-NTENSLWSLEP 74 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCc-----eEEeC--cccCcc-cCccceEEEeC
Confidence 456788999999999999999 54 5789999999999998875211100 01111 589999 89998899998
Q ss_pred C-EEEEEEeccC
Q 028463 185 G-VLKVTVPKVK 195 (208)
Q Consensus 185 G-vL~I~lPK~~ 195 (208)
| .|.|+|-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 7 5899999974
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.29 E-value=0.079 Score=38.44 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=57.5
Q ss_pred eeEEEcCCeEEEEEEcCC--CCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEE--CCE
Q 028463 111 WDAKETDDALNLSIDMPG--LGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMK--NGV 186 (208)
Q Consensus 111 ~di~e~~d~y~l~vdLPG--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~--nGv 186 (208)
+|++++++.+.|.+-..+ ..++++.+....+.|.|+..... ..|...+.|-..| +++. +.++. -|-
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~--------~~~~~~~~L~~~I-~~~~-~~~~~~~~~K 70 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGD--------KSYLLHLDLSNEV-QWPC-EVRISTETGK 70 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCC--------ceEEEeeeccccC-CCCc-EEEEcccCce
Confidence 478999999999999885 55566667667778998865331 1477888999999 7774 55554 789
Q ss_pred EEEEEeccCc
Q 028463 187 LKVTVPKVKE 196 (208)
Q Consensus 187 L~I~lPK~~~ 196 (208)
++|+|.|.++
T Consensus 71 VEI~L~K~e~ 80 (87)
T cd06490 71 IELVLKKKEP 80 (87)
T ss_pred EEEEEEcCCC
Confidence 9999999753
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=0.92 Score=37.45 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=62.4
Q ss_pred ccceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCE
Q 028463 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 186 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGv 186 (208)
..|.+.+.+..+-++|++.++ ...+++|.++...|+++|..... ...|...|.|-..| +++..+-+-. +-
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d------~~~~~~~ief~~eI-dpe~sk~k~~-~r 75 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGAD------NHKYENEIEFFDEI-DPEKSKHKRT-SR 75 (180)
T ss_pred cCCcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCC------ceeeEEeeehhhhc-CHhhcccccc-ce
Confidence 356678888899999999999 56677788888899999986432 23677789999999 8998777666 66
Q ss_pred EEEEEeccCcc
Q 028463 187 LKVTVPKVKEE 197 (208)
Q Consensus 187 L~I~lPK~~~~ 197 (208)
+..+++++++.
T Consensus 76 ~if~i~~K~e~ 86 (180)
T KOG3158|consen 76 SIFCILRKKEL 86 (180)
T ss_pred EEEEEEEcccc
Confidence 77777665543
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=88.83 E-value=4.3 Score=33.60 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=60.6
Q ss_pred ccceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEEC
Q 028463 107 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~n 184 (208)
..+.+.+..+=..+.|.|.+| |+ +..+|.+.+....|.|.-......-+ =.|...| +.+..-..+++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ild----------G~L~~~v-k~des~WtiEd 85 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILD----------GELSHSV-KVDESTWTIED 85 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceec----------Ccccccc-ccccceEEecC
Confidence 567788888889999999888 77 88899999998888876554321100 1378888 89999999999
Q ss_pred CEEEEEEeccCc
Q 028463 185 GVLKVTVPKVKE 196 (208)
Q Consensus 185 GvL~I~lPK~~~ 196 (208)
|.+.|.+-++..
T Consensus 86 ~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 86 GKMIVILLKKSN 97 (179)
T ss_pred CEEEEEEeeccc
Confidence 988888776644
No 44
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=79.61 E-value=1 Score=39.98 Aligned_cols=81 Identities=26% Similarity=0.226 Sum_probs=60.9
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEE
Q 028463 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 187 (208)
Q Consensus 108 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL 187 (208)
...|+.-++.....|-+.-|-++.|+|.+-+++|+|.|+.+.... .--+.-.+.|-..| .++...-+.---++
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~------~~~~~~~~~Ly~ev-~P~~~s~k~fsK~~ 248 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL------RLWNDITISLYKEV-YPDIRSIKSFSKRV 248 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeecccc------chHHHhhhhhhhhc-Ccchhhhhhcchhh
Confidence 356788899999999999999999999999999999999874322 11344556777777 67776665555677
Q ss_pred EEEEeccC
Q 028463 188 KVTVPKVK 195 (208)
Q Consensus 188 ~I~lPK~~ 195 (208)
.|++-|..
T Consensus 249 e~~l~KV~ 256 (368)
T COG5091 249 EVHLRKVE 256 (368)
T ss_pred eehhhhhh
Confidence 77776653
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=77.73 E-value=26 Score=27.19 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=50.3
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccC-cccee----eeEEEEEEECCCCCCCCcceEEEE
Q 028463 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG-EGEES----VRRYTSRIDLPEKLYRTDQIKAEM 182 (208)
Q Consensus 108 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~-~~e~~----~~~f~r~i~LP~~v~d~~~IkA~~ 182 (208)
...+.|...++ ..+++.. ..+.+++..++++|.|+....... ..... ...-.-.|.||... ..+.|+..-
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~-~l~~i~i~~ 139 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDY-KLDKIDIKT 139 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCC-ceeEEEEEe
Confidence 34567777544 3334444 222789999999999998722111 11110 12344568899987 778999999
Q ss_pred ECCEEEEEE
Q 028463 183 KNGVLKVTV 191 (208)
Q Consensus 183 ~nGvL~I~l 191 (208)
.+|-+.|.=
T Consensus 140 ~~G~i~i~~ 148 (166)
T PF13349_consen 140 SSGDITIED 148 (166)
T ss_pred ccccEEEEc
Confidence 999887753
No 46
>PRK10743 heat shock protein IbpA; Provisional
Probab=76.94 E-value=14 Score=29.02 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=32.1
Q ss_pred eEEEE-ECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCc
Q 028463 134 VRVSL-EQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 134 I~V~v-~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~ 196 (208)
++|.. +++.+.|.+. ||. + +.+.|+-.+++|+|+|..-+..+
T Consensus 37 ~di~ee~~~~~~v~ae-------------------lPG-v-~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 37 YNVELVDENHYRIAIA-------------------VAG-F-AESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEcCCCEEEEEEE-------------------CCC-C-CHHHeEEEEECCEEEEEEEECcc
Confidence 45553 4667777765 995 7 89999999999999999876543
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=71.91 E-value=19 Score=31.73 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=68.1
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEE
Q 028463 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKV 189 (208)
Q Consensus 110 ~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I 189 (208)
..|+..++..++|.|..-|.-++.-.|..++-+|.|....... ...|...+.|=.-| +++...+.|-.--.+|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~g------na~fd~d~kLwgvv-nve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFG------NASFDLDYKLWGVV-NVEESSVVMGETKVEI 288 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCC------Cceeeccceeeeee-chhhceEEeecceEEE
Confidence 4588999999999999999999999999999999988775321 23788888888878 8999999998889999
Q ss_pred EEeccCcc
Q 028463 190 TVPKVKEE 197 (208)
Q Consensus 190 ~lPK~~~~ 197 (208)
+|+|.++.
T Consensus 289 sl~k~ep~ 296 (320)
T KOG1667|consen 289 SLKKAEPG 296 (320)
T ss_pred EEeccCCC
Confidence 99998654
No 48
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=71.43 E-value=10 Score=27.51 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~ 196 (208)
.|.-.+.||. + +.+.|+-++++|.|+|..-+...
T Consensus 9 ~~~v~adlPG-~-~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVCG-F-EPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEecc
Confidence 4555667996 6 89999999999999999987543
No 49
>PF14913 DPCD: DPCD protein family
Probab=70.66 E-value=33 Score=28.79 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=58.6
Q ss_pred ccceeeEEEcCCeEEEEE-EcCCCCccceEEEEEC--CEEEEEeeecccCccceeeeEEEEEEECCC------CCCCCcc
Q 028463 107 LRRGWDAKETDDALNLSI-DMPGLGKEDVRVSLEQ--NTLVIRGEGGKEGEGEESVRRYTSRIDLPE------KLYRTDQ 177 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~v-dLPG~~kedI~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~------~v~d~~~ 177 (208)
..|-+-=..+...|.-+| .|| +.++-..|++++ +.++|+-.-+ +|-+.|.+|+ +. +.+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNK----------KYyKk~~IPDl~R~~l~l-~~~~ 152 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNK----------KYYKKFSIPDLDRCGLPL-EQSA 152 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCc----------cceeEecCCcHHhhCCCc-chhh
Confidence 455555577788999999 565 578888888886 5688876522 7888888886 33 5678
Q ss_pred eEEEEECCEEEEEEeccC
Q 028463 178 IKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 178 IkA~~~nGvL~I~lPK~~ 195 (208)
++..+.|..|.|+..|..
T Consensus 153 ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 153 LSFAHQNNTLIISYKKPK 170 (194)
T ss_pred ceeeeecCeEEEEecCcH
Confidence 888999999999998853
No 50
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=70.32 E-value=12 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.392 Sum_probs=34.0
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK 193 (208)
++.|+|+++++.+.++|.. -..++.||..| . ++...+++.+++....
T Consensus 2 P~gV~v~~~~~~i~v~G~~------------g~l~~~~~~~v-~---v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPK------------GELSRPIPPGV-K---VEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETTEEEEESSS------------SEEEEEETTTE-E---EEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCC------------EeEEEECCCCe-e---EEEEcCCCceEEEECc
Confidence 5689999999999999983 23567778765 2 4444678877776653
No 51
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=64.10 E-value=16 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=29.1
Q ss_pred cCCeEEEEEEcC-CCCccceEEEEECCEEEEEee
Q 028463 116 TDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 116 ~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~ 148 (208)
....|.-++.|| +++.+.++..+.+|.|.|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 357899999999 689999999999999999864
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=62.67 E-value=15 Score=26.21 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.5
Q ss_pred CeEEEEEEcCCCCccceEEEEECCEEEEEe
Q 028463 118 DALNLSIDMPGLGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 118 d~y~l~vdLPG~~kedI~V~v~~~~L~I~g 147 (208)
..|.-.+.||.+..+.++-.+.+|.|+|+.
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 467777889999999999999999999985
No 53
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=62.14 E-value=29 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+.+++||.|+|.--+.
T Consensus 8 ~y~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 8 KYQVFLDVCH-F-TPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred eEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777888998 5 799999999999999998754
No 54
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=62.05 E-value=32 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.|.-.+.||. + +++.|+-.+++|.|+|+--+..
T Consensus 8 ~~~v~~dlpG-~-~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVVQ-F-RPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 6778888998 5 7999999999999999997654
No 55
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=61.75 E-value=20 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.0
Q ss_pred CeEEEEEEcC-CCCccceEEEEECCEEEEEeeecccC
Q 028463 118 DALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEG 153 (208)
Q Consensus 118 d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~ 153 (208)
..|.-.+.|| +++.+.|+-.+++|.|+|+..+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 4677789999 68999999999999999999876554
No 56
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=60.67 E-value=26 Score=29.36 Aligned_cols=77 Identities=14% Similarity=0.311 Sum_probs=55.9
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEE-ECCCCCCCCcceEEEEECCEEEE
Q 028463 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRI-DLPEKLYRTDQIKAEMKNGVLKV 189 (208)
Q Consensus 111 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i-~LP~~v~d~~~IkA~~~nGvL~I 189 (208)
+.+-++++-+.+-+.|-|+..|+|+|+...+.|-|....-+ +..|.-.+ .|-.+| +++.-+-..+-....|
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq-------GK~y~~~vnnLlk~I-~vEks~~kvKtd~v~I 148 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ-------GKNYRMIVNNLLKPI-SVEKSSKKVKTDTVLI 148 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecC-------Ccceeeehhhhcccc-ChhhcccccccceEEE
Confidence 45567788899999999999999999999998887765221 12555444 356677 7777777777777777
Q ss_pred EEeccC
Q 028463 190 TVPKVK 195 (208)
Q Consensus 190 ~lPK~~ 195 (208)
.+.|.+
T Consensus 149 ~~kkVe 154 (224)
T KOG3260|consen 149 LCKKVE 154 (224)
T ss_pred eehhhh
Confidence 775543
No 57
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=60.62 E-value=21 Score=25.03 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~ 196 (208)
.|.-.+.||. + .++.|+-.++++.|+|+..+...
T Consensus 8 ~~~v~~dlpG-~-~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVKG-F-KPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECCC-C-CHHHcEEEEECCEEEEEEEEeee
Confidence 7888899997 6 89999999999999999987643
No 58
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=60.00 E-value=25 Score=25.19 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=29.1
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccCcc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 197 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~~~ 197 (208)
.|.-.+.||. + +.+.|+-.++++.|+|...+....
T Consensus 12 ~~~v~~~lPG-~-~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVAG-F-SEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEcccc
Confidence 6677788997 6 899999999999999998765443
No 59
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=59.80 E-value=37 Score=24.27 Aligned_cols=32 Identities=6% Similarity=0.290 Sum_probs=27.2
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+-..++|.|+|+--+.
T Consensus 11 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVKH-F-SPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6667778998 5 799999999999999998654
No 60
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=58.73 E-value=31 Score=23.43 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=28.9
Q ss_pred CeEEEEEEcCC-CCccceEEEEECCEEEEEeeec
Q 028463 118 DALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGG 150 (208)
Q Consensus 118 d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~ 150 (208)
+.|.+.++||+ +.+++.+..+.++.|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56999999996 6999999999999999997654
No 61
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=58.56 E-value=41 Score=23.81 Aligned_cols=32 Identities=6% Similarity=0.323 Sum_probs=27.4
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+-.+++|.|+|+.-+.
T Consensus 8 ~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVKH-F-SPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777788995 6 899999999999999998653
No 62
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.93 E-value=19 Score=23.69 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCCCccceEEEEECCEEEEEeeeccc
Q 028463 127 PGLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
++++..+|+|.+.++.+.|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 36777799999999999999997544
No 63
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=57.62 E-value=29 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.|.-.+.||. + +++.|+-++++|.|+|+--+..
T Consensus 9 ~~~v~~dlpG-~-~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVSD-F-SPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEec
Confidence 6777888996 6 8999999999999999987643
No 64
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=56.80 E-value=39 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.1
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 167 DLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 167 ~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.||. + +.+.|+-.+++|.|+|.--+..
T Consensus 50 dlPG-v-~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 50 ALAG-F-RQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EeCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 3896 6 8999999999999999997654
No 65
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=56.11 E-value=23 Score=25.32 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=27.9
Q ss_pred CCeEEEEEEcC-CCCccceEEEEECCEEEEEe
Q 028463 117 DDALNLSIDMP-GLGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 117 ~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g 147 (208)
...|.-.+.|| +++.+.|+-.+++|.|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 46899999999 68999999999999999985
No 66
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=54.39 E-value=29 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEee
Q 028463 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~ 148 (208)
...|...+.||+ +..+.++..+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 468999999996 68889999999999999754
No 67
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=54.39 E-value=46 Score=24.67 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=34.2
Q ss_pred ccceeeEEEcCCeEEEEEEcCCC-----CccceEEEEECCEEEEEee
Q 028463 107 LRRGWDAKETDDALNLSIDMPGL-----GKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 107 ~~p~~di~e~~d~y~l~vdLPG~-----~kedI~V~v~~~~L~I~g~ 148 (208)
..|.+.|+++++.|.|.+--+.- .++...|.-+++.|.|...
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~g 70 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIETG 70 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEecC
Confidence 47999999999999999866653 6778888888888888654
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.81 E-value=58 Score=25.43 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=33.8
Q ss_pred ceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 133 DVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 133 dI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.++|.-.++.+.|... ||. + +.+.|+-.+.++.|+|+.-+..
T Consensus 42 ~vdi~e~~~~~~I~~e-------------------lPG-~-~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 42 PVDIEETDDEYRITAE-------------------LPG-V-DKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred cEEEEEcCCEEEEEEE-------------------cCC-C-ChHHeEEEEECCEEEEEEEecc
Confidence 4556666677777766 887 6 8999999999999999998764
No 69
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=52.15 E-value=14 Score=25.18 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=12.0
Q ss_pred cceEEEEECCEEEEEEe
Q 028463 176 DQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 176 ~~IkA~~~nGvL~I~lP 192 (208)
..|+|.|+||+|+--=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46999999999986433
No 70
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=51.24 E-value=45 Score=22.26 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEeeeccc
Q 028463 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
+..|.+.++|++ +.+++....+.++.|.|.-.+...
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 478999999997 588889999999999999776443
No 71
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=48.95 E-value=37 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.1
Q ss_pred CeEEEEEEcC-CCCccceEEEEE-CCEEEEEee
Q 028463 118 DALNLSIDMP-GLGKEDVRVSLE-QNTLVIRGE 148 (208)
Q Consensus 118 d~y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~ 148 (208)
..|.=++.|| +++.++|+-.+. +|.|+|.+-
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 5677888999 899999999998 899999863
No 72
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=48.44 E-value=50 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.|.-.+.||. + +++.|+..++++.|+|+.-+..
T Consensus 8 ~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVRG-F-SPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECCC-C-ChHHeEEEEECCEEEEEEEEee
Confidence 6778888998 4 7999999999999999997653
No 73
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=47.52 E-value=77 Score=22.53 Aligned_cols=32 Identities=6% Similarity=0.345 Sum_probs=27.1
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+-...++.|+|.--+.
T Consensus 8 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVKH-F-SPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777788987 5 899999999999999998543
No 74
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=45.18 E-value=86 Score=26.11 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=33.1
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|++|+|+++++.++|+|... ..+ ..||..- ..+....+||.|.|.-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G----------~L~--~~~~~~~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG----------ELT--RSFRHLP---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc----------eEE--EEecCCC---ceEEEEeCCCEEEEEeC
Confidence 68999999999999999843 222 3444421 24666778898777754
No 75
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=45.17 E-value=67 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
.|.-.+.||. + +++.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVNH-F-APEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECCC-C-CHHHEEEEEECCEEEEEEEECc
Confidence 6777788998 5 7999999999999999997643
No 76
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=43.47 E-value=1.2e+02 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|+.|+|+++++.++|+|... ..+ ..||.. .++...+||.|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~G----------~L~--~~~~~~-----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG----------ELT--RDFWYP-----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCe----------EEE--EEecCC-----cEEEEEECCEEEEEEC
Confidence 68899999999999999853 222 334331 2556778998888754
No 77
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.90 E-value=58 Score=24.19 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=28.2
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEee
Q 028463 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 111 ~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~ 148 (208)
|+|.+.+| .|....||.+ .|.|+.++..|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEecc
Confidence 67788888 7778899875 5888999999999984
No 78
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=41.53 E-value=48 Score=27.08 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=31.1
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEEC-CCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDL-PEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~L-P~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|++|+|+++++.++|+|... ...+ .| |.. ++...+++.|.|..+
T Consensus 7 P~~V~v~i~~~~i~vkGp~G----------~L~~--~~~~~~------v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG----------EVTR--ELWYPG------IEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe----------EEEE--EEeCCc------EEEEEeCCEEEEEeC
Confidence 58899999999999999853 2232 33 433 445678898888754
No 79
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=41.39 E-value=1.1e+02 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=32.2
Q ss_pred CccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 130 GKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 130 ~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
-|++|+|+++++.++++|-+.+ -+..|+.++ ++-+.+|+++.+..-
T Consensus 11 ~P~gV~V~i~~~~v~vkGpkGe------------L~~~~~~~~-----v~v~~~~~~~vv~~~ 56 (178)
T COG0097 11 IPAGVTVSIEGQVVTVKGPKGE------------LTREFHDNV-----VKVEVEDNILVVRPV 56 (178)
T ss_pred cCCCeEEEEeccEEEEECCCcE------------EEEEecCcc-----eEEEecCCEEEEeec
Confidence 4789999999999999997432 223344433 677788887766553
No 80
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=40.70 E-value=57 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.3
Q ss_pred EEEEEEcC-CCCccceEEEEE-CCEEEEEeeecccC
Q 028463 120 LNLSIDMP-GLGKEDVRVSLE-QNTLVIRGEGGKEG 153 (208)
Q Consensus 120 y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~~~~~~ 153 (208)
|.=+.-|| |++++.|.=.+. +|.|+|++......
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 33356788 999999999997 59999999876654
No 81
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=39.96 E-value=1.2e+02 Score=25.23 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=32.7
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|+.|+|+++++.|+|+|.... . +..||..- -.|....++|.|.|.-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG~----------L--s~~~~~~~---~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRGT----------L--TKDLRHLQ---LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCcE----------E--EEEcCCCC---cEEEEEecCCEEEEEeC
Confidence 589999999999999998532 2 24455421 13566778888888744
No 82
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=39.86 E-value=99 Score=20.62 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=29.5
Q ss_pred eeeEE-EcCCeEEEEEEcCCCCccceEEEEE-CCEEEEEee
Q 028463 110 GWDAK-ETDDALNLSIDMPGLGKEDVRVSLE-QNTLVIRGE 148 (208)
Q Consensus 110 ~~di~-e~~d~y~l~vdLPG~~kedI~V~v~-~~~L~I~g~ 148 (208)
++.+. -..+.|.|++..||+..-.-+|.+. +....|+.+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 44555 3467999999999999888888887 456666655
No 83
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=38.61 E-value=1.5e+02 Score=24.15 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=31.5
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|... ..+ ..||..+ ....+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G----------~l~--~~l~~~i------~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG----------ELS--RTLHPGV------TVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe----------EEE--EEcCCCe------EEEEECCEEEEEec
Confidence 58999999999999999843 233 3345544 45668888887754
No 84
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=35.82 E-value=94 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=30.9
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|... ...+ .||..+ +...+|+.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~G----------~l~~--~~~~~v------~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG----------ELSR--TLNPDV------TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE----------EEEE--EcCCCe------EEEEECCEEEEEcC
Confidence 58999999999999999843 3333 345444 44568887777654
No 85
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=35.77 E-value=1.7e+02 Score=23.87 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=31.2
Q ss_pred ccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 131 KEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|+.|+|+++++.|+|+|.... -+..||..+ ....+++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~------------l~~~~~~~v------~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGT------------LSRKIPDLI------TIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE------------EEEECCCCe------EEEEeCCEEEEEcC
Confidence 478999999999999998432 224566544 45668887777654
No 86
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=34.65 E-value=94 Score=21.15 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEeeecc
Q 028463 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
+..|.+.++|++ +.+++.+..+.++.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457999999986 58889999999999999877543
No 87
>PRK10568 periplasmic protein; Provisional
Probab=34.54 E-value=2.4e+02 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=18.0
Q ss_pred CCCCccceEEEEECCEEEEEeeecc
Q 028463 127 PGLGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
|+++..+|+|.+.++.+++.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCC
Confidence 3445567888888888888887653
No 88
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=33.75 E-value=1.5e+02 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=18.5
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEe
Q 028463 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g 147 (208)
.....+.+.||- .+-++|++....+.+.|.+
T Consensus 117 ~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 117 DNKSKITIYLPKDYKLDKIDIKTSSGDITIED 148 (166)
T ss_pred CCCcEEEEEECCCCceeEEEEEeccccEEEEc
Confidence 445666666663 3346666666666666654
No 89
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.29 E-value=20 Score=33.58 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=55.4
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEE--ECC
Q 028463 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM--KNG 185 (208)
Q Consensus 108 ~p~~di~e~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~--~nG 185 (208)
.|.+.+..+++.+.|.+..|-.+...+.+..-++....++. .|--+..+|..+-+...-.|.| ++|
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~------------pyflrl~~p~~~~~d~~~n~s~d~kd~ 70 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG------------PYFLRLAGPGMVEDDARPNASYDAKDG 70 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc------------hhHHhhcCcchhhhhccccCccccccc
Confidence 57788999999999999999666667766666666665554 5555566776663333334444 789
Q ss_pred EEEEEEeccCcc
Q 028463 186 VLKVTVPKVKEE 197 (208)
Q Consensus 186 vL~I~lPK~~~~ 197 (208)
...|.+||..+.
T Consensus 71 ~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 71 YAHVKVPKFHPG 82 (466)
T ss_pred eeEEeecCCCcc
Confidence 999999996443
No 90
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=31.51 E-value=1.1e+02 Score=21.06 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=24.9
Q ss_pred EEEEEECCCCCCCCcceEEEEECCEEEEEEe
Q 028463 162 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 162 f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
..=.|.+|..+ ..+.++..+.+.-|.|.++
T Consensus 10 V~i~i~~~~~~-~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGT-KSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCC-cceeEEEEEEcCEEEEEEC
Confidence 34456789988 8999999999999999886
No 91
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=30.96 E-value=2.4e+02 Score=21.44 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=25.4
Q ss_pred eEEEEEEECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
..|+.-|....++-+...++-.++|-+|....|+.
T Consensus 44 ~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~ 78 (113)
T cd01759 44 NTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV 78 (113)
T ss_pred CEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE
Confidence 36777788888886667777778888776655654
No 92
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=30.86 E-value=78 Score=24.93 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEECCCCCCCCcceEEEEECCEEEEEEeccC
Q 028463 164 SRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 164 r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK~~ 195 (208)
-++.-|+++ .+.++.+.+||.|.|...+..
T Consensus 23 v~v~~~~~l--~~~i~~~v~~g~L~I~~~~~~ 52 (181)
T PF10988_consen 23 VEVEADENL--LDRIKVEVKDGTLKISYKKNI 52 (181)
T ss_dssp EEEEEEHHH--HCCEEEEEETTEEEEEE-SCC
T ss_pred EEEEEChhh--cceEEEEEECCEEEEEECCCc
Confidence 334445554 577888888888888887543
No 93
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=30.51 E-value=71 Score=24.03 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.4
Q ss_pred eEEEEECCEEEEEEec
Q 028463 178 IKAEMKNGVLKVTVPK 193 (208)
Q Consensus 178 IkA~~~nGvL~I~lPK 193 (208)
+.+++.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 7888999999999985
No 94
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=29.29 E-value=2.1e+02 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=13.8
Q ss_pred cceEEEEECCEEEEEEec
Q 028463 176 DQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 176 ~~IkA~~~nGvL~I~lPK 193 (208)
=.+++..+||-.++++-.
T Consensus 68 y~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 68 YTLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEEECCEEEEEEEE
Confidence 357788899988888754
No 95
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=28.54 E-value=1.5e+02 Score=24.69 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=30.7
Q ss_pred cceEEEEECCEEEEEeeecccCccceeeeEEEEEEECCCCCCCCcceEEEEECCEEEEEEec
Q 028463 132 EDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 132 edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~IkA~~~nGvL~I~lPK 193 (208)
..+++..+.+.+.|+|..+.- -..=.+.... +.=.++-+|++|.|.+.==+
T Consensus 131 ~~i~v~~~~~~V~V~Gtlkt~----------vg~~~~~~~~-k~Y~l~~~y~~G~l~L~~f~ 181 (188)
T PRK13726 131 TSVRVWPQYGRVDIRGVLKTW----------IGDSKPFTEI-KHYILILKRENGVTWLDNFG 181 (188)
T ss_pred eeEEEccCCCEEEEEEEEEEE----------ECCcccCchh-eEEEEEEEEcCCEEEEEEEE
Confidence 456666667788888874321 1111122223 45668889999999986433
No 96
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=28.42 E-value=68 Score=24.11 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.7
Q ss_pred cceEEEEECCEEEEEEec
Q 028463 176 DQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 176 ~~IkA~~~nGvL~I~lPK 193 (208)
..+.+++.+|||+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 468999999999999964
No 97
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=28.32 E-value=2.1e+02 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=30.4
Q ss_pred cCCeEEEEEEcCCCCccceEEEEECCEEEEEeeecccCc
Q 028463 116 TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE 154 (208)
Q Consensus 116 ~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~ 154 (208)
.++.|+=++.||--..+..++++.++.|.|..++..+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCCC
Confidence 344466788899666788899999999999998766543
No 98
>PF08126 Propeptide_C25: Propeptide_C25; InterPro: IPR012600 This entry represents a propeptide domain found at the N-terminal end of some peptidases that belong to MEROPS peptidase family C25 (IPR001769 from INTERPRO). Little is known about its fuction.; GO: 0004197 cysteine-type endopeptidase activity
Probab=27.99 E-value=2.2e+02 Score=23.79 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=37.4
Q ss_pred cceeeEEE-cCCeE-EEEEEcCCCCccceEEEEECC---EEEEEeeecccCccceeeeEEEEEEECCC
Q 028463 108 RRGWDAKE-TDDAL-NLSIDMPGLGKEDVRVSLEQN---TLVIRGEGGKEGEGEESVRRYTSRIDLPE 170 (208)
Q Consensus 108 ~p~~di~e-~~d~y-~l~vdLPG~~kedI~V~v~~~---~L~I~g~~~~~~~~e~~~~~f~r~i~LP~ 170 (208)
.|.+.+.+ +++.+ .|++.|+++.-++|+ ..++ .+.+.|.........-.-.-+++.|.||.
T Consensus 8 ~~~v~~l~s~~~s~~~i~~~l~~~~~~~ve--~~~g~~~~I~~~~~~~~~~~G~P~LP~~~~~I~vP~ 73 (202)
T PF08126_consen 8 NPDVTLLQSNNNSFIQIQFRLPELEIEEVE--TDGGIFQRISIPGGFNLSEPGEPELPVVSKSIAVPA 73 (202)
T ss_pred CCCceEEEeecCceEEEEEEcCCceEEEEE--ecCceEEEEEcCCCcccCCCCCCCCCEEEEEEEccC
Confidence 45566663 34444 699999999888776 4443 34444433322222223446899999999
No 99
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=27.50 E-value=56 Score=24.51 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.5
Q ss_pred cceEEEEECCEEEEEEec
Q 028463 176 DQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 176 ~~IkA~~~nGvL~I~lPK 193 (208)
..+.+++.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 568889999999999983
No 100
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=26.60 E-value=1.3e+02 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEEEEECCCCCCCCcceEEEEECCEEEEEE
Q 028463 162 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 162 f~r~i~LP~~v~d~~~IkA~~~nGvL~I~l 191 (208)
-.-+|+||..+ ..++++..++..-|+|.+
T Consensus 17 V~v~i~lp~~~-~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGT-RAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCC-ceeeEEEEEEcCEEEEEE
Confidence 34457899999 899999999999999988
No 101
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.50 E-value=55 Score=24.49 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.8
Q ss_pred ceEEEEECCEEEEEEec
Q 028463 177 QIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 177 ~IkA~~~nGvL~I~lPK 193 (208)
.+.+++.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888999999999984
No 102
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=25.83 E-value=86 Score=23.53 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=17.7
Q ss_pred CCCCccceEEEEECCEEEEEee
Q 028463 127 PGLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~ 148 (208)
-|+++++++|.+-+|.+.++--
T Consensus 18 ~~l~~~ql~vsl~~G~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNGEVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccCceEEEcc
Confidence 4788899999998888877754
No 103
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=25.49 E-value=51 Score=22.38 Aligned_cols=21 Identities=33% Similarity=0.775 Sum_probs=17.9
Q ss_pred CCccceEEEEECCEEEEEeee
Q 028463 129 LGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 129 ~~kedI~V~v~~~~L~I~g~~ 149 (208)
++.+.|.|....+.|.|+|+.
T Consensus 23 f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETTEEEEEEEEE
T ss_pred ECCCEEEEEeCCEEEEEECce
Confidence 567888899999999999984
No 104
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=24.66 E-value=1.1e+02 Score=20.47 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.1
Q ss_pred cCCCC-ccceEEEEECCEEEEE
Q 028463 126 MPGLG-KEDVRVSLEQNTLVIR 146 (208)
Q Consensus 126 LPG~~-kedI~V~v~~~~L~I~ 146 (208)
-.||. -+.|+|.+..+.|+|+
T Consensus 35 ~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 35 EAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HhCCCCCCEEEEEEECCEEEEe
Confidence 34774 4588899999999886
No 105
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=23.81 E-value=36 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=18.2
Q ss_pred CCCCCCCCcceEEEEECCEEEEEEe
Q 028463 168 LPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 168 LP~~v~d~~~IkA~~~nGvL~I~lP 192 (208)
|-+.+ ..+.--+.|.||||+|.|+
T Consensus 65 l~e~~-~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEV-PGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HHhhc-CccccccccccceEEEEec
Confidence 44455 3466678999999999997
No 106
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=22.95 E-value=1.1e+02 Score=24.15 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=22.1
Q ss_pred CCCCccceEEEEECCEEEEEeeeccc
Q 028463 127 PGLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
.|+...+|+|.++++.++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 47788889999999999999986544
No 107
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=22.79 E-value=2.3e+02 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.2
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEEecc
Q 028463 167 DLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 167 ~LP~~v~d~~~IkA~~~nGvL~I~lPK~ 194 (208)
.=|+.| .+.........|-++++||+.
T Consensus 150 ~~p~~V-~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENV-VPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSS-EEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEE-EEEEeeEEecCCEEEEEeCCC
Confidence 357777 677655666799999999974
No 108
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=21.53 E-value=2e+02 Score=20.94 Aligned_cols=35 Identities=3% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEeeecc
Q 028463 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
+..|.+.++|.+ +.+++-+..+.++.|.|+-.+..
T Consensus 43 ~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 43 GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred CeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 445999999997 58999999999999999988654
No 109
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.99 E-value=73 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.1
Q ss_pred CCCccceEEEEECCEEEEEeee
Q 028463 128 GLGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 128 G~~kedI~V~v~~~~L~I~g~~ 149 (208)
-|+.+.|.|....+.|.|+|+.
T Consensus 40 ~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 40 VFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred EECCCEEEEEcCceEEEEEccc
Confidence 4588999999999999999983
No 110
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.83 E-value=97 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCccceEEEEECCEEEEEee
Q 028463 118 DALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 118 d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~ 148 (208)
+.+.++++.|.--.+.|++.+++++|.|.-+
T Consensus 19 ~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 19 DSPSVEVEADENLLDRIKVEVKDGTLKISYK 49 (181)
T ss_dssp SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-
T ss_pred CCcEEEEEEChhhcceEEEEEECCEEEEEEC
Confidence 5557777766433577888888888888766
No 111
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=20.65 E-value=76 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCccceEEEEECCEEEEEeee
Q 028463 129 LGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 129 ~~kedI~V~v~~~~L~I~g~~ 149 (208)
|+.+.|.|....+.|.|+|+.
T Consensus 22 fd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcEEEEEEcce
Confidence 467888888888999999873
Done!