RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028463
(208 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 84.2 bits (209), Expect = 2e-21
Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEE------SVRRYTSR 165
D KE DA + +D+PG E+++V +E N ++++G+ KE E + S R ++ +
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSYRSFSRK 60
Query: 166 IDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERAD 201
LPE D++KA +K+GVL VTVPK++ E+
Sbjct: 61 FVLPEN-ADPDKVKASLKDGVLTVTVPKLEPPEKKP 95
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 83.0 bits (206), Expect = 3e-21
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLY 173
+TDD + +++D+PG+ KED++V +E N L I G+ +E E E S + +LPE
Sbjct: 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED-V 60
Query: 174 RTDQIKAEMKNGVLKVTVPK 193
++ KA ++NGVL++T+PK
Sbjct: 61 DPEKSKASLENGVLEITLPK 80
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 83.0 bits (206), Expect = 4e-21
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEE-------SVRRYTS 164
D ETDDA + D+PG KED++V +E L I GE +E E EE S ++
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSR 60
Query: 165 RIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193
LPE D+IKA ++NGVL +T+PK
Sbjct: 61 SFRLPED-VDPDKIKASLENGVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 77.4 bits (191), Expect = 3e-18
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 77 PFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRV 136
F L F E +R D +ETDD ++ ++PG+ KED+ +
Sbjct: 9 RFDFFPLLRDSPGFDRLFREFGNLPESRPTGTPPVDIEETDDEYRITAELPGVDKEDIEI 68
Query: 137 SLEQNTLVIRGEGGKEGEGEE--------SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188
++E NTL IRGE +E E EE + + LPEK+ + IKA+ KNG+L
Sbjct: 69 TVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVIKAKYKNGLLT 127
Query: 189 VTVPKVKEEE 198
VT+PK + EE
Sbjct: 128 VTLPKAEPEE 137
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 75.0 bits (185), Expect = 5e-18
Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQN-TLVIRGEGGKEGE--------GEESVRRY 162
D KET +A D+PG+ KEDV+V +E L I GE KE E E S R+
Sbjct: 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRF 62
Query: 163 TSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193
R LPE D++KA ++NGVL VTVPK
Sbjct: 63 VRRFRLPENA-DADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 63.3 bits (155), Expect = 2e-13
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRG--EGGKEGEGEE-----SVRRYTS 164
D KETDD + D+PG KED+++ + L I + K+ + ++ R Y S
Sbjct: 4 DIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGS 63
Query: 165 ---RIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193
LP ++IKA+ +NGVLK+T+PK
Sbjct: 64 FSRSFYLPNV--DEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 41.4 bits (98), Expect = 2e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEGEESVRRYTSRIDLPEKL 172
+ D+ +++D+ G E+++V + N LV+ G+ +E E R +T R LPE
Sbjct: 3 NDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEG- 61
Query: 173 YRTDQIKAEM-KNGVLKVTVPK 193
D + + + +GVL + PK
Sbjct: 62 VDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 38.7 bits (91), Expect = 2e-04
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEE-------SVRRYTSRI 166
K ++ +++ + G ++D+ + +E N L + G+ E E + R +
Sbjct: 7 KTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSF 66
Query: 167 DLPEKLYRTDQIK-AEMKNGVLKV 189
+L + + ++K AE++NG+L +
Sbjct: 67 NLADHV----KVKGAELENGLLTI 86
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 36.9 bits (86), Expect = 8e-04
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPE 170
W +T D + ++I + + K+DV+V +L + +GG E Y +L
Sbjct: 1 WY--QTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKE-------YLLEGELFG 51
Query: 171 KLYRTDQIKAEMKNGVLKVTVPKVKEEER 199
+ ++ K +++ +++T+ K + E
Sbjct: 52 PI-DPEESKWTVEDRKIEITLKKKEPGEW 79
>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins
[General function prediction only].
Length = 368
Score = 33.9 bits (77), Expect = 0.051
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPE 170
+D ET D + I P +G E V LE NTL I RR D+
Sbjct: 179 YDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSI----------SYQPRRLRLWNDITI 228
Query: 171 KLYRT---DQIKAEMKNGVLKVTVPKVKE 196
LY+ D + + ++V + KV+
Sbjct: 229 SLYKEVYPDIRSIKSFSKRVEVHLRKVEM 257
>gnl|CDD|205122 pfam12875, DUF3826, Protein of unknown function (DUF3826). This is
a putative sugar-binding family.
Length = 187
Score = 31.7 bits (72), Expect = 0.15
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 162 YTSRIDLPEKLYR------TDQIKAEMKNGVLKVT-------VPKVKEEERADVF 203
Y P L + +K M GVL VT +P + EEE+A ++
Sbjct: 79 YRLHFAFPADLSLYLTEEQIEAVKDGMTYGVLPVTYKAYQDMIPSLTEEEKAQIY 133
>gnl|CDD|107372 cd06377, PBP1_iGluR_NMDA_NR3, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NR3 subunit of NMDA receptor family.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the NR3 subunit of NMDA receptor
family. The ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer composed of two NR1
and two NR2 (A, B, C, and D) or of NR3 (A and B)
subunits. The receptor controls a cation channel that is
highly permeable to monovalent ions and calcium and
exhibits voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 382
Score = 28.6 bits (64), Expect = 2.4
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 28/88 (31%)
Query: 76 DPFSPTRSLSQV---------------------LNFMDQMTESPFFSGTRGGLRRGWDAK 114
DP S RS+ Q L+F+ E P S R RG
Sbjct: 65 DPASLLRSVCQTVVVQGVSALLAFPQTRPELVQLDFVSAALEIPVVSIVRREFPRG---- 120
Query: 115 ETDDALNLSIDM--PGLGKEDVRVSLEQ 140
+ + +L + P DV +S+ Q
Sbjct: 121 -SQNPFHLQMSWASPLSTLLDVLLSVLQ 147
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase.
Length = 784
Score = 28.3 bits (63), Expect = 3.6
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 119 ALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLYRTDQI 178
A +L +++P LG E V L + L ++ GG +G E+ Y S + KL + +
Sbjct: 162 AKDLDLNLP-LGSEVVDAMLHKRDLDLKSGGGSNTKGREAYLAYVS--EGIGKLQDWEMV 218
Query: 179 -KAEMKNGVL 187
K + KNG L
Sbjct: 219 MKYQRKNGSL 228
>gnl|CDD|165425 PHA03154, PHA03154, hypothetical protein; Provisional.
Length = 304
Score = 27.7 bits (61), Expect = 4.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 160 RRYTSRIDLPEKLYRTD--QIKAEMKNGVLKVTVPKVKEE----ERAD 201
+RY+ DL + + D IKAE KN +L VPK + E+ D
Sbjct: 8 QRYSLISDLHKNFHYVDINVIKAEFKNVILDTVVPKFSQPATHLEKGD 55
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. HspB7 is a
25-kDa protein, preferentially expressed in heart and
skeletal muscle. It binds the cytoskeleton protein
alpha-filamin (also known as actin-binding protein 280).
The expression of HspB7 is increased during rat muscle
aging. Its expression is also modulated in obesity
implicating this protein in this and related metabolic
disorders. As the human gene encoding HspB7 is mapped to
chromosome 1p36.23-p34.3 it is a positional candidate
for several dystrophies and myopathies.
Length = 81
Score = 26.4 bits (58), Expect = 4.3
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKLY 173
K D ++D+ ED+ V+ N + + E K + +T + LPE +
Sbjct: 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAE--KLASDGTVMNTFTHKCQLPEDVD 61
Query: 174 RTDQIKAEMKNGVLKVTV 191
T + ++G L +
Sbjct: 62 PTSVSSSLGEDGTLTIKA 79
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 159 VRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188
VR+ S+ DL + L DQ+K + + G +
Sbjct: 198 VRKLISQGDL-DDLLEKDQLKKQKEKGKVF 226
>gnl|CDD|216885 pfam02120, Flg_hook, Flagellar hook-length control protein FliK.
This is the C terminal domain of FliK. FliK controls the
length of the flagellar hook by directly measuring the
hook length as a molecular ruler. This family also
includes YscP of the Yersinia type III secretion system,
and equivalent proteins in other pathogenic bacterial
type III secretion systems.
Length = 79
Score = 25.7 bits (57), Expect = 5.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 120 LNLSIDMPGLGKEDVRVSLEQNTLVIR 146
L +D P LG +VR+SL+ L ++
Sbjct: 14 AELRLDPPELGPVEVRLSLDGGQLSVQ 40
>gnl|CDD|236620 PRK09739, PRK09739, hypothetical protein; Provisional.
Length = 199
Score = 27.0 bits (60), Expect = 6.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 148
+RGW+ +D LN+ + LG ED V+ NTLV GE
Sbjct: 138 KRGWEKNMSD-YLNVGM-ASYLGIEDSDVTFLYNTLVFDGE 176
>gnl|CDD|218504 pfam05215, Spiralin, Spiralin. This family consists of Spiralin
proteins found in spiroplasma bacteria. Spiroplasmas are
helically shaped pathogenic bacteria related to the
mycoplasmas. The surface of spiroplasma bacteria is
crowded with the membrane-anchored lipoprotein spiralin
whose structure and function are unknown although its
cellular function is thought to be a structural and
mechanical one rather than a catalytic one.
Length = 239
Score = 27.2 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 183 KNGVLKVTVPKVKEEERADVFQVKV 207
K G +KVT+PK E ++ D+ V V
Sbjct: 121 KTGYIKVTLPKNSEVKKVDISDVTV 145
>gnl|CDD|110302 pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.
Length = 467
Score = 27.1 bits (60), Expect = 8.2
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 22/99 (22%)
Query: 118 DALNLSIDMPGLGKEDVRVSLEQ----------NTLVIRGEGGKEGEGEESVRRYTSRID 167
D L +SID+PG+ D + ++ NTLV + E V +RI
Sbjct: 94 DPLTISIDLPGMANSDNTIVVQNPTYSNVSGAVNTLV-----ARWHEKYSQVNNVPARIQ 148
Query: 168 LPEKL-YRTDQIKA------EMKNGVLKVTVPKVKEEER 199
E + Y Q+KA + N L + + E E+
Sbjct: 149 YDESMAYSESQLKAKFGVNFKALNNSLGIDFNAISEGEK 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,646,874
Number of extensions: 1010986
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 31
Length of query: 208
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 115
Effective length of database: 6,812,680
Effective search space: 783458200
Effective search space used: 783458200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)