RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028463
(208 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 99.0 bits (247), Expect = 1e-26
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 18/157 (11%)
Query: 62 FPRRRDDFFSGNVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGW---DAKETDD 118
F R +FF+ P + T + ESP + +G+ E D
Sbjct: 11 FERMFKEFFA----TPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQ 66
Query: 119 ALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEES------VRRYTS---RIDLP 169
+ + +PG+ KED+ ++ +TL IR + E + I LP
Sbjct: 67 HIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLP 126
Query: 170 EKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 206
+ + + A+ +NGVL V +PK E ++
Sbjct: 127 ATV-KEENASAKFENGVLSVILPK-AESSIKKGINIE 161
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 95.9 bits (239), Expect = 1e-25
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 69 FFSGNVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRG------WDAKETDDALNL 122
NVFDPF+ + S + + GG D KET +A
Sbjct: 4 VRRSNVFDPFA------DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVF 57
Query: 123 SIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGEGEESV-----RRYTS---RIDLPEKLY 173
D+PG+ KE+V+V +E N LV+ GE KE E + R R L E
Sbjct: 58 KADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA- 116
Query: 174 RTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKV 207
+ +++KA ++NGVL VTVPK E ++ +V +++
Sbjct: 117 KVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 91.0 bits (227), Expect = 3e-24
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESV-----RRYTS-- 164
D KE + L D+PG+ + V +++ L IRGE E E RRY S
Sbjct: 8 DIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFH 67
Query: 165 -RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196
R LP+ D I A +NGVL++ +PK
Sbjct: 68 RRFALPDSA-DADGITAAGRNGVLEIRIPKRPA 99
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 88.8 bits (221), Expect = 3e-23
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 88 LNFMDQMTESPFFSGTRGGLRRGW---DAKETDDALNLSIDMPGLGKEDVRVSLE-QNTL 143
+ ++ + + +RG + D E L + D+ G KE ++ + QN L
Sbjct: 1 MYYLGKELQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNEL 60
Query: 144 VIRGEGGKEGEGEESVRRYTS----RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 197
+I E G + + + I LP + + +I + +NGVL + +P
Sbjct: 61 IIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTS 118
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 68.8 bits (168), Expect = 6e-15
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 62 FPRRRDDFFSGNVFDPFSPTRSLSQVL-NFMDQMTESPFFSGTRGGLRRGW--------- 111
P R FF SP+R Q + + P + R
Sbjct: 7 HPWIRRPFF-----PFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWF 61
Query: 112 -----DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEGEESVRRYTSR 165
+ + D ++++D+ E+++V + + + + G+ ++ E R + +
Sbjct: 62 DTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRK 121
Query: 166 IDLPEKLYRTDQIKAEM-KNGVLKVTVPKVKEEERADVFQVKVD 208
+P I + + +GVL V P+ + + +
Sbjct: 122 YRIPAD-VDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITRE 164
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 62.5 bits (152), Expect = 2e-13
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSR-IDLPE 170
++ +D+ E++ V + + + + + + + R R LP
Sbjct: 5 QVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPP 64
Query: 171 KLYRTDQIKAEM-KNGVLKVTVPKVKEEE 198
+ + + GVL + +
Sbjct: 65 G-VDPAAVTSALSPEGVLSIQATPASAQA 92
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 62.1 bits (151), Expect = 3e-13
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEGEESVRRYTSRIDLPEK 171
D ++++D+ E+++V + + + + G+ ++ E R + + +P
Sbjct: 1 GAMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 172 LYRTDQIKAEM-KNGVLKVTVPKVKEEE 198
I + M +GVL V P+ +
Sbjct: 61 -VDPLTITSSMSSDGVLTVNGPRKQVSG 87
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.4 bits (147), Expect = 1e-12
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE-GGKEGEGEESVRRYTSRIDLPEK 171
T D +S+D+ +++ V + + I G+ ++ E R +T + LP
Sbjct: 2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPG 61
Query: 172 LYRTDQIKAEM-KNGVLKVTVPKVK 195
Q+ + + G L V P K
Sbjct: 62 -VDPTQVSSSLSPEGTLTVEAPMPK 85
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 59.5 bits (144), Expect = 3e-12
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSR-IDLPE 170
+ + D + +D+ ED+ V ++++ + I G+ + + + R R LP
Sbjct: 6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPS 65
Query: 171 KLYRTDQIKAEM-KNGVLKVTVPKVKEEERA 200
+ + +G+L + PK+ A
Sbjct: 66 N-VDQSALSCSLSADGMLTFSGPKIPSGVDA 95
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 57.9 bits (139), Expect = 2e-10
Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 12/154 (7%)
Query: 48 DDRDLDIDRRSARSFPRRRDDFFSGNVFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGL 107
D + + FS F + V+ M + F
Sbjct: 36 FDWAERSRQSLHDDIVNMHRNLFSLEPFTAMD--NAFESVMKEMSAIQPREFHPELEYTQ 93
Query: 108 RRGWD--------AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESV 159
D K+ + ++ E++ + ++N LV+R +
Sbjct: 94 PGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMS 153
Query: 160 RRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTVP 192
I LP + I+A + + VL + P
Sbjct: 154 ESVGRSIPLPPS-VDRNHIQATITTDDVLVIEAP 186
Score = 49.4 bits (117), Expect = 2e-07
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 127 PGLGKEDVRVSLEQNTLVIRGEGGKEGEGEE----SVRRYTSRIDLPEKLYRTDQIKAEM 182
P +DV+V + N + + G GKE + E R + PE + +AE+
Sbjct: 243 PHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEV-VDASKTQAEI 301
Query: 183 KNGVLKVTVPKVK 195
+G++ V P K
Sbjct: 302 VDGLMVVEAPLFK 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-05
Identities = 19/169 (11%), Positives = 44/169 (26%), Gaps = 38/169 (22%)
Query: 53 DIDRRSARSFPRRR--------DDFFSGNVFDPFSP-------TRSLSQVLNFMDQMTES 97
I R + + + ++ F+ TR QV +F+ T +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTT 287
Query: 98 PFFSGTRGGLRRGWDAKETDD--ALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEG 155
E L L +E + + +
Sbjct: 288 HISL---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIA------ 334
Query: 156 EESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQ 204
ES+R + D + + +++ ++ ++ E +F
Sbjct: 335 -ESIRDGLATWD------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Score = 42.1 bits (98), Expect = 7e-05
Identities = 33/229 (14%), Positives = 66/229 (28%), Gaps = 67/229 (29%)
Query: 25 APSATSASRFF-------NTNAVRQYDDGGDDRDLD----------IDR-RSARSFPRRR 66
+ A S + V+++ + + R + +R
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 67 DDFFSGN-VFDPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSID 125
D ++ N VF ++ +R + + LR+ E A N+ ID
Sbjct: 117 DRLYNDNQVFAKYNVSR--------LQPYLK----------LRQA--LLELRPAKNVLID 156
Query: 126 -MPGLGKEDVRVSLEQNTLVIRGEG--------GKEGEGEESVRR-----------YTSR 165
+ G GK V + + + V E + +TSR
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 166 IDLPEKL-YRTDQIKAEMKNGVLKVTVPK-------VKEEERADVFQVK 206
D + R I+AE++ + V+ + + F +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.002
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 156 EESVRRYTSRIDLPEKLYRTDQ-----IKAEMK 183
++++++ + + KLY D IKA M+
Sbjct: 19 KQALKKLQASL----KLYADDSAPALAIKATME 47
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 35.3 bits (81), Expect = 0.009
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEGEESVRRYTSRIDLPEKL 172
+ + +PG K+ V+++ + + I LP L
Sbjct: 300 ITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVE------------AGDQRRNIFLPPAL 347
Query: 173 YRTDQIKAEMKNGVLKVT-VPKVKEE 197
A+ +N L ++ +
Sbjct: 348 SGRPITGAKFQNNYLIISFLEHHHHH 373
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 28.3 bits (63), Expect = 0.72
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKE 152
++ W +T+ + +++ + + K DV V + L +
Sbjct: 10 IKYDWY--QTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSG 53
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 27.1 bits (60), Expect = 1.6
Identities = 5/39 (12%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI 145
R + + + + +++ G+ K++V + + L +
Sbjct: 3 YRHEYY--QKPEEVVVTVFAKGIPKQNVNIDFGEQILSV 39
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding
protein; siderophore-binding protein, transport protein;
1.70A {Vibrio cholerae}
Length = 292
Score = 27.7 bits (62), Expect = 2.8
Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 11/69 (15%)
Query: 124 IDMPGLGKEDVRVSLEQNTLVIRGEG-GKEGEGEESVRRYTSRIDLPEKLYRTDQIKAEM 182
I + S +Q + G+ E E + + ++ I
Sbjct: 103 IVFAAEADQGYWESTQQQWRNL-GKVFAIEPAVEAKIEQVDAQF---------KSIMQYN 152
Query: 183 KNGVLKVTV 191
+ +
Sbjct: 153 QQHKSDAML 161
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 26.1 bits (57), Expect = 5.5
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 147 GEGGKEG--EGEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEE 198
G + R+ +P+ + + Q+ + + ++V + + E
Sbjct: 14 YNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGER 67
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp,
transferase; HET: DNA; 2.89A {Mycobacterium
tuberculosis} PDB: 3rb9_A*
Length = 408
Score = 26.5 bits (59), Expect = 7.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 134 VRVSLEQNTLVIRGEGGKEGEGEESV 159
VR+ ++ + G EE +
Sbjct: 303 VRMEFADGSVRLSAGADDVGRAEEDL 328
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB:
3jro_C
Length = 460
Score = 26.2 bits (57), Expect = 9.2
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 76 DPFSPTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSID 125
D P R + VL+ D+ + FF + G D+AL +
Sbjct: 157 DLDFPLRENTNVLDVKDKEEDHIFFKYIYELILAG----AIDEALEEAKL 202
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta
protein; 1.50A {Synechocystis SP}
Length = 417
Score = 26.2 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 61 SFPRRRDDFFSGNVFDPFSPTRSLSQ 86
S R + FF G FDP +P L
Sbjct: 384 SPSRGIETFFDGITFDPENPQAYLDS 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,154,528
Number of extensions: 186055
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 27
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)