Query 028464
Match_columns 208
No_of_seqs 146 out of 1478
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2igv_A Peptidyl-prolyl CIS-tra 100.0 5.8E-55 2E-59 345.1 21.1 170 38-207 3-172 (173)
2 1a58_A Cyclophilin; isomerase, 100.0 4.4E-54 1.5E-58 341.2 22.3 172 36-207 4-177 (177)
3 2wfi_A Peptidyl-prolyl CIS-tra 100.0 4.4E-54 1.5E-58 341.6 21.7 172 35-206 6-179 (179)
4 1qng_A Peptidyl-prolyl CIS-tra 100.0 3.9E-54 1.3E-58 339.4 19.7 169 37-206 2-170 (170)
5 2he9_A NK-tumor recognition pr 100.0 8.6E-54 2.9E-58 343.0 21.8 176 32-207 13-190 (192)
6 2z6w_A Peptidyl-prolyl CIS-tra 100.0 1.1E-53 3.8E-58 335.3 21.2 162 38-207 3-165 (165)
7 2r99_A Peptidyl-prolyl CIS-tra 100.0 1.4E-53 4.9E-58 337.0 21.3 165 35-207 8-173 (173)
8 2cmt_A Peptidyl-prolyl CIS-tra 100.0 1.1E-53 3.8E-58 337.2 20.6 165 35-207 7-172 (172)
9 2poy_A Peptidyl-prolyl CIS-tra 100.0 1.1E-53 3.7E-58 340.8 20.7 171 35-205 16-186 (186)
10 3pmp_A Cyclophilin A; peptidyl 100.0 1.3E-53 4.6E-58 334.8 20.8 162 38-207 2-164 (164)
11 3rdd_A Peptidyl-prolyl CIS-tra 100.0 5E-53 1.7E-57 336.8 20.3 165 35-207 19-184 (184)
12 2haq_A Cyclophilin; rotamase, 100.0 3.9E-53 1.3E-57 333.7 19.3 164 34-206 7-172 (172)
13 4fru_A Cyclophilin B, peptidyl 100.0 5.1E-53 1.7E-57 337.4 19.9 170 31-207 5-175 (185)
14 3ich_A Peptidyl-prolyl CIS-tra 100.0 6.4E-53 2.2E-57 337.1 19.9 169 31-207 8-178 (188)
15 1mzw_A Cyclophilin H, U-snRNP- 100.0 4.7E-53 1.6E-57 335.2 18.8 169 36-206 8-177 (177)
16 3k2c_A Peptidyl-prolyl CIS-tra 100.0 6.3E-52 2.1E-56 332.6 21.3 164 36-207 25-191 (193)
17 1z81_A Cyclophilin; structural 100.0 3.4E-51 1.2E-55 335.0 19.1 168 37-206 58-229 (229)
18 2c3b_A Ppiase, cyclophilin; is 100.0 1.5E-51 5.2E-56 325.1 13.1 161 37-206 2-172 (172)
19 2ose_A Probable peptidyl-proly 100.0 1.2E-48 3.9E-53 321.8 18.5 171 35-207 11-207 (234)
20 1ihg_A Cyclophilin 40; ppiase 100.0 4E-48 1.4E-52 338.3 21.1 170 38-207 15-185 (370)
21 2fu0_A Cyclophilin, putative; 100.0 1.4E-47 4.7E-52 299.2 16.7 147 50-207 12-160 (160)
22 2x7k_A Peptidyl-prolyl CIS-tra 100.0 2E-47 6.8E-52 300.0 16.3 153 38-206 11-165 (166)
23 2poe_A Cyclophilin-like protei 100.0 3.3E-47 1.1E-51 303.3 17.8 147 50-207 23-175 (185)
24 1zkc_A Peptidyl-prolyl CIS-tra 100.0 4.2E-47 1.4E-51 304.8 18.3 154 40-207 19-175 (197)
25 1w74_A Peptidyl-prolyl CIS-tra 100.0 5.7E-47 1.9E-51 303.0 18.1 160 38-206 23-191 (191)
26 2a2n_A Peptidylprolyl isomeras 100.0 4.5E-47 1.5E-51 300.3 17.1 145 50-205 28-175 (176)
27 2ok3_A Peptidyl-prolyl CIS-tra 100.0 4.5E-47 1.5E-51 296.8 16.5 147 50-207 7-156 (161)
28 2b71_A Cyclophilin-like protei 100.0 9.1E-47 3.1E-51 302.8 17.2 154 38-207 38-193 (196)
29 2k7n_A Peptidyl-prolyl CIS-tra 100.0 1.3E-46 4.4E-51 303.0 15.5 154 38-207 11-166 (203)
30 3bo7_A Peptidyl-prolyl CIS-tra 100.0 2.1E-46 7.3E-51 302.5 16.4 154 40-207 6-173 (201)
31 2hq6_A Serologically defined c 100.0 1.9E-45 6.5E-50 293.0 14.9 158 33-207 19-180 (185)
32 1v9t_A Cyclophilin B; beta bar 100.0 2.8E-45 9.5E-50 288.0 14.7 152 38-207 4-166 (166)
33 1lop_A Cyclophilin A; rotamase 100.0 2.7E-45 9.1E-50 287.6 12.8 145 50-207 6-164 (164)
34 3s6m_A Peptidyl-prolyl CIS-tra 100.0 3.9E-44 1.3E-48 281.9 14.7 144 50-206 10-167 (167)
35 3bkp_A Cyclophilin; malaria, i 100.0 6.9E-44 2.4E-48 292.8 14.9 158 33-207 16-193 (232)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 3.4E-38 1.2E-42 273.1 7.9 155 31-202 161-355 (369)
37 3kop_A Uncharacterized protein 96.4 0.029 1E-06 43.4 9.5 119 41-185 22-166 (188)
38 2nnz_A Hypothetical protein; b 94.6 0.036 1.2E-06 42.1 4.3 104 43-184 32-142 (153)
39 1zx8_A Hypothetical protein TM 81.2 7.4 0.00025 28.5 7.6 44 136-184 74-123 (136)
40 4i62_A Amino acid ABC transpor 41.4 5.6 0.00019 30.6 0.0 11 1-11 2-12 (269)
41 1x7f_A Outer surface protein; 33.0 19 0.00067 30.9 2.1 51 134-185 325-376 (385)
42 2p0o_A Hypothetical protein DU 32.0 17 0.00059 31.1 1.6 51 134-185 299-350 (372)
No 1
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=5.8e-55 Score=345.07 Aligned_cols=170 Identities=68% Similarity=1.199 Sum_probs=162.7
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 117 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 117 (208)
+++||||+.++++++|+|+||||++.||++|+||++||++++|.++.++..||+|+.||||+|+|+|||||+..+++.++
T Consensus 3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg 82 (173)
T 2igv_A 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG 82 (173)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred CCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCC
Confidence 68999999999999999999999999999999999999987776666777899999999999999999999987888999
Q ss_pred cccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 028464 118 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 197 (208)
Q Consensus 118 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~ 197 (208)
+++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++|.++
T Consensus 83 ~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~ 162 (173)
T 2igv_A 83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKD 162 (173)
T ss_dssp CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSC
T ss_pred CccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eEEEeeeeec
Q 028464 198 VVISNSGEMA 207 (208)
Q Consensus 198 i~I~~cg~l~ 207 (208)
|+|.+||+|+
T Consensus 163 v~I~~~g~l~ 172 (173)
T 2igv_A 163 CMIADCGQLK 172 (173)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEeEEEc
Confidence 9999999997
No 2
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=4.4e-54 Score=341.22 Aligned_cols=172 Identities=56% Similarity=0.929 Sum_probs=160.7
Q ss_pred ccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccC-CCcccccCCEEEEecCCceEeecCCcCCCC
Q 028464 36 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRIIPSFMIQGGDFTLGDG 114 (208)
Q Consensus 36 ~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~-~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~ 114 (208)
..+++||||+.++++++|+|+||||++.||++|+||++||++++|.++. ++..+|+|+.||||+|+|+|||||+..+++
T Consensus 4 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g 83 (177)
T 1a58_A 4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG 83 (177)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSS
T ss_pred CCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCC
Confidence 3578999999999999999999999999999999999999988775443 455699999999999999999999987889
Q ss_pred CCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCC
Q 028464 115 RGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGE 193 (208)
Q Consensus 115 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~ 193 (208)
.+++++|+..+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.+++ +++
T Consensus 84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~ 163 (177)
T 1a58_A 84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR 163 (177)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 489
Q ss_pred cccceEEEeeeeec
Q 028464 194 PKSKVVISNSGEMA 207 (208)
Q Consensus 194 P~~~i~I~~cg~l~ 207 (208)
|.++|+|.+||+|.
T Consensus 164 P~~~v~I~~~G~l~ 177 (177)
T 1a58_A 164 PLADVVILNCGELV 177 (177)
T ss_dssp BSSCEEEEEEEEEC
T ss_pred CCCCeEEEEeEEEC
Confidence 99999999999984
No 3
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=4.4e-54 Score=341.60 Aligned_cols=172 Identities=55% Similarity=0.938 Sum_probs=160.6
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCccc-CCCcccccCCEEEEecCCceEeecCCcCCC
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPSFMIQGGDFTLGD 113 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~ 113 (208)
...+++||||+++++|++|+|+||||++.||++|+||++||+|++|.++ .++.++|+|+.||||+|+|+|||||+..++
T Consensus 6 ~~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~ 85 (179)
T 2wfi_A 6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGN 85 (179)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCC
Confidence 3458899999999999999999999999999999999999999887643 356789999999999999999999998788
Q ss_pred CCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CC
Q 028464 114 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SG 192 (208)
Q Consensus 114 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~ 192 (208)
+.+++++|+..+++|...++|+++|+|+|++.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++ ++
T Consensus 86 g~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~ 165 (179)
T 2wfi_A 86 GRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 165 (179)
T ss_dssp SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTS
T ss_pred CCCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999875 58
Q ss_pred CcccceEEEeeeee
Q 028464 193 EPKSKVVISNSGEM 206 (208)
Q Consensus 193 ~P~~~i~I~~cg~l 206 (208)
+|.++|+|.+||+|
T Consensus 166 ~P~~~v~I~~~G~l 179 (179)
T 2wfi_A 166 KPFAEVRILSCGEL 179 (179)
T ss_dssp CBSSCEEEEEEEEC
T ss_pred CCCCCeEEEeCeeC
Confidence 99999999999987
No 4
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=3.9e-54 Score=339.44 Aligned_cols=169 Identities=62% Similarity=1.058 Sum_probs=158.9
Q ss_pred cccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCC
Q 028464 37 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 116 (208)
Q Consensus 37 ~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 116 (208)
.+++||||+.+++++.|+|+||||++.||++|+||++||+++ |.++.++...|+|+.||||+|+|+|||||+..+++.+
T Consensus 2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g 80 (170)
T 1qng_A 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG 80 (170)
T ss_dssp CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence 478999999999999999999999999999999999999865 4444556666999999999999999999998788899
Q ss_pred CcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 028464 117 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS 196 (208)
Q Consensus 117 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~ 196 (208)
++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++|.+
T Consensus 81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~ 160 (170)
T 1qng_A 81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR 160 (170)
T ss_dssp CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred ceEEEeeeee
Q 028464 197 KVVISNSGEM 206 (208)
Q Consensus 197 ~i~I~~cg~l 206 (208)
+|+|.+||+|
T Consensus 161 ~v~I~~cG~l 170 (170)
T 1qng_A 161 SVVITDCGEL 170 (170)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEeceeC
Confidence 9999999987
No 5
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-54 Score=342.95 Aligned_cols=176 Identities=52% Similarity=0.888 Sum_probs=161.1
Q ss_pred ccccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCccc-CCCcccccCCEEEEecCCceEeecCCc
Q 028464 32 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPSFMIQGGDFT 110 (208)
Q Consensus 32 ~~~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~~~iq~G~~~ 110 (208)
......+++||||+++++|++|+|+||||++.||++|+||++||+|++|.++ .++.++|+|+.||||+|+|+|||||+.
T Consensus 13 ~~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~ 92 (192)
T 2he9_A 13 GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92 (192)
T ss_dssp ------CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTT
T ss_pred cccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCccc
Confidence 3445678999999999999999999999999999999999999999887643 357789999999999999999999998
Q ss_pred CCCCCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC
Q 028464 111 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ 190 (208)
Q Consensus 111 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~ 190 (208)
.+++.+++++|+..+++|+..++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.+++
T Consensus 93 ~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~ 172 (192)
T 2he9_A 93 EGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTD 172 (192)
T ss_dssp TSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred CCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCCcccceEEEeeeeec
Q 028464 191 -SGEPKSKVVISNSGEMA 207 (208)
Q Consensus 191 -~~~P~~~i~I~~cg~l~ 207 (208)
+++|.++|+|.+||+|.
T Consensus 173 ~~~~P~~~v~I~~~g~l~ 190 (192)
T 2he9_A 173 AASRPYADVRVIDCGVLA 190 (192)
T ss_dssp TTSCBSSCEEEEEEEECC
T ss_pred CCCCCcCCeEEEEeEEEc
Confidence 58999999999999986
No 6
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=1.1e-53 Score=335.33 Aligned_cols=162 Identities=64% Similarity=1.147 Sum_probs=155.1
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGDGRG 116 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 116 (208)
+++||||+.+++|++|+|+||||++.||++|+||++||+|++| + |+|+.||||+|+|+|||||+..+++.+
T Consensus 3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g 74 (165)
T 2z6w_A 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG--------FGYKGSTFHRVIPSFMCQAGDFTNHNGTG 74 (165)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC--------ccCcCCEEEEEECCCEEEeCCccCCCCCC
Confidence 6899999999999999999999999999999999999987654 7 999999999999999999998788899
Q ss_pred CcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 028464 117 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS 196 (208)
Q Consensus 117 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~ 196 (208)
+.++|++.+++|...++|.++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++|.+
T Consensus 75 g~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~ 154 (165)
T 2z6w_A 75 GKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK 154 (165)
T ss_dssp CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred CCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCC
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred ceEEEeeeeec
Q 028464 197 KVVISNSGEMA 207 (208)
Q Consensus 197 ~i~I~~cg~l~ 207 (208)
+|+|.+||+|+
T Consensus 155 ~v~I~~~g~l~ 165 (165)
T 2z6w_A 155 KIVITDCGQLS 165 (165)
T ss_dssp CEEEEEEEECC
T ss_pred cEEEEEeEEEC
Confidence 99999999985
No 7
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=1.4e-53 Score=336.99 Aligned_cols=165 Identities=62% Similarity=1.096 Sum_probs=156.0
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCC
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD 113 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~ 113 (208)
...+++||||+.+++|++|+|+||||++.||++|+||++||+|++| + |+|+.||||+|+|+|||||+..++
T Consensus 8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 79 (173)
T 2r99_A 8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHN 79 (173)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC--------ceecCCEEEEeeCCCEEEeCCcCCCC
Confidence 3447899999999999999999999999999999999999987654 5 999999999999999999998788
Q ss_pred CCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCC
Q 028464 114 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 193 (208)
Q Consensus 114 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~ 193 (208)
+.++.++|+..+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++
T Consensus 80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~ 159 (173)
T 2r99_A 80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK 159 (173)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCC
T ss_pred CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cccceEEEeeeeec
Q 028464 194 PKSKVVISNSGEMA 207 (208)
Q Consensus 194 P~~~i~I~~cg~l~ 207 (208)
|.++|+|.+||+|+
T Consensus 160 P~~~v~I~~cG~l~ 173 (173)
T 2r99_A 160 PKQKVIIADCGEYV 173 (173)
T ss_dssp CSSCEEEEEEEECC
T ss_pred CCCCeEEEEeeeEC
Confidence 99999999999985
No 8
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=1.1e-53 Score=337.17 Aligned_cols=165 Identities=58% Similarity=1.060 Sum_probs=156.0
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCC
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD 113 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~ 113 (208)
+..+++||||+.+++|+.|+|+||||++.||++|+||++||++++| + |+|+.||||+|+|+|||||+..++
T Consensus 7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 78 (172)
T 2cmt_A 7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG--------FGYHNCCFHRVIPQFMCQGGDFVKGD 78 (172)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC--------ceECCCEEEEEECCCEEEcCCccCCC
Confidence 3457899999999999999999999999999999999999987544 6 999999999999999999998788
Q ss_pred CCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCC
Q 028464 114 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 193 (208)
Q Consensus 114 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~ 193 (208)
+.+++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++
T Consensus 79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~ 158 (172)
T 2cmt_A 79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGK 158 (172)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCC
T ss_pred CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred cccceEEEeeeeec
Q 028464 194 PKSKVVISNSGEMA 207 (208)
Q Consensus 194 P~~~i~I~~cg~l~ 207 (208)
|.++|+|.+||+|+
T Consensus 159 P~~~v~I~~~g~l~ 172 (172)
T 2cmt_A 159 VKEPVIISRCGELI 172 (172)
T ss_dssp CSSCEEEEEEEEEC
T ss_pred CCCCEEEEEeEeEC
Confidence 99999999999985
No 9
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=1.1e-53 Score=340.83 Aligned_cols=171 Identities=66% Similarity=1.096 Sum_probs=160.6
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCC
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG 114 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~ 114 (208)
...+++||||+.+++++.|+|+||||++.||++|+||++||++++|.++.++..+|+|+.||||+|+|+|||||+..+++
T Consensus 16 ~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G 95 (186)
T 2poy_A 16 FQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDG 95 (186)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred cCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCC
Confidence 45679999999999999999999999999999999999999988776666777789999999999999999999987888
Q ss_pred CCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCc
Q 028464 115 RGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEP 194 (208)
Q Consensus 115 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P 194 (208)
.+++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++++++|
T Consensus 96 ~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P 175 (186)
T 2poy_A 96 TGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKP 175 (186)
T ss_dssp SCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCC
T ss_pred CCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ccceEEEeeee
Q 028464 195 KSKVVISNSGE 205 (208)
Q Consensus 195 ~~~i~I~~cg~ 205 (208)
.++|+|.+||+
T Consensus 176 ~~~v~I~~cG~ 186 (186)
T 2poy_A 176 TKSVCITASGV 186 (186)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEeCCC
Confidence 99999999996
No 10
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=1.3e-53 Score=334.80 Aligned_cols=162 Identities=60% Similarity=1.088 Sum_probs=155.2
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGDGRG 116 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 116 (208)
+++|||||.+++|++|+|+||||++.||++|+||++||+|++| + |+|+.||||+|+|+|||||+..+++.+
T Consensus 2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g 73 (164)
T 3pmp_A 2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG--------FGYKDSIFHRVIPQFMLQGGDFTRHNGTG 73 (164)
T ss_dssp CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC--------CcccCCEEEEEECCCeEEeCCCCCCCCCC
Confidence 6899999999999999999999999999999999999987654 7 999999999999999999977788999
Q ss_pred CcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 028464 117 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS 196 (208)
Q Consensus 117 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~ 196 (208)
+.++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||||++|||||++|++.++++++|.+
T Consensus 74 g~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~ 153 (164)
T 3pmp_A 74 GKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNA 153 (164)
T ss_dssp CCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred CcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeeeeec
Q 028464 197 KVVISNSGEMA 207 (208)
Q Consensus 197 ~i~I~~cg~l~ 207 (208)
+|+|.+||+|+
T Consensus 154 ~v~I~~cg~l~ 164 (164)
T 3pmp_A 154 TIKITDCGTVA 164 (164)
T ss_dssp CEEEEEEEEC-
T ss_pred CEEEEeCeEEC
Confidence 99999999984
No 11
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=5e-53 Score=336.75 Aligned_cols=165 Identities=62% Similarity=1.092 Sum_probs=156.6
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCC
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD 113 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~ 113 (208)
+..+++||||+.++++++|+|+||||++.||++|+||++||+++.| + |+|+.||||+|+|+|||||+..++
T Consensus 19 ~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~ 90 (184)
T 3rdd_A 19 GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKG--------FGYKGSCFHRIIPGFMCQGGDFTRHN 90 (184)
T ss_dssp --CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred cCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcC--------cccCCCEEEEccCCcEEEeCCCCCCC
Confidence 4467999999999999999999999999999999999999987654 5 999999999999999999988788
Q ss_pred CCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCC
Q 028464 114 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 193 (208)
Q Consensus 114 ~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~ 193 (208)
+.++.+++++.+++|...++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||||++|++.++++++
T Consensus 91 g~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~ 170 (184)
T 3rdd_A 91 GTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGK 170 (184)
T ss_dssp SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSC
T ss_pred CCCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeeeeec
Q 028464 194 PKSKVVISNSGEMA 207 (208)
Q Consensus 194 P~~~i~I~~cg~l~ 207 (208)
|.++|+|.+||+|+
T Consensus 171 P~~~v~I~~cG~l~ 184 (184)
T 3rdd_A 171 TSKKITIADCGQLE 184 (184)
T ss_dssp CSSCEEEEEEEECC
T ss_pred CcCCeEEEeCeEEC
Confidence 99999999999985
No 12
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=3.9e-53 Score=333.74 Aligned_cols=164 Identities=65% Similarity=1.061 Sum_probs=155.3
Q ss_pred ccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCC
Q 028464 34 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLG 112 (208)
Q Consensus 34 ~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~ 112 (208)
.|.++++||||+.++++++|+|+||||++.||++|+||++||+|++| + |+|+.||||+|+|+|||||+..+
T Consensus 7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~ 78 (172)
T 2haq_A 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG--------FGYKDSIFHRVIQNFMIQGGDFTNF 78 (172)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTTS
T ss_pred CCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEECCCEEecCCccCC
Confidence 46778999999999999999999999999999999999999987654 7 99999999999999999997778
Q ss_pred CCCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCC-
Q 028464 113 DGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS- 191 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~- 191 (208)
++.+++++|++.+++|+..++|. +|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|++.+++.
T Consensus 79 ~g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~ 157 (172)
T 2haq_A 79 DGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSH 157 (172)
T ss_dssp SSSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGG
T ss_pred CCCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCC
Confidence 88999999999999998899999 9999999999999999999999999999999999999999999999999998765
Q ss_pred CCcccceEEEeeeee
Q 028464 192 GEPKSKVVISNSGEM 206 (208)
Q Consensus 192 ~~P~~~i~I~~cg~l 206 (208)
++|.++|+|.+||+|
T Consensus 158 ~~P~~~v~I~~~g~l 172 (172)
T 2haq_A 158 DRPVKPVKIVASGEL 172 (172)
T ss_dssp GCBSSCEEEEEEEEC
T ss_pred CcCCCCeEEEEeEEC
Confidence 599999999999987
No 13
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=5.1e-53 Score=337.38 Aligned_cols=170 Identities=65% Similarity=1.093 Sum_probs=160.0
Q ss_pred cccccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCc
Q 028464 31 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT 110 (208)
Q Consensus 31 ~~~~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~ 110 (208)
....|.++++||||+.++++++|+|+||||++.||++|+||++||++++| .+|+|+.||||+|+|+|||||+.
T Consensus 5 ~~~~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g-------~~Y~g~~FhRvi~~f~iQgGd~~ 77 (185)
T 4fru_A 5 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKG-------FGYKDSKFHRVIKDFMIQGGDFT 77 (185)
T ss_dssp GGEEEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS-------CCSTTCBCCEEETTTEEEECCTT
T ss_pred cCCCCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCC-------CeEcCCEEEEeeCCCeEEECCCC
Confidence 34568899999999999999999999999999999999999999987543 16999999999999999999998
Q ss_pred CCCCCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC
Q 028464 111 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ 190 (208)
Q Consensus 111 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~ 190 (208)
.+++.++.+++++.+++|...++|+++|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|++.+++
T Consensus 78 ~~~g~gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~ 157 (185)
T 4fru_A 78 RGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTD 157 (185)
T ss_dssp TSSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred CCCCCCCccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCCcccceEEEeeeeec
Q 028464 191 -SGEPKSKVVISNSGEMA 207 (208)
Q Consensus 191 -~~~P~~~i~I~~cg~l~ 207 (208)
+++|.++|+|.+||+|+
T Consensus 158 ~~~~P~~~v~I~~~g~l~ 175 (185)
T 4fru_A 158 GRDKPLKDVTIADCGKIE 175 (185)
T ss_dssp TTSCBSSCEEEEEEEEEE
T ss_pred CCCcCCCCEEEEEceEEe
Confidence 58999999999999985
No 14
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=6.4e-53 Score=337.05 Aligned_cols=169 Identities=65% Similarity=1.122 Sum_probs=158.3
Q ss_pred cccccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCC
Q 028464 31 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDF 109 (208)
Q Consensus 31 ~~~~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~ 109 (208)
....|.++++|||||.+++|++|+|+||||++.||++|+||++||+|++| + |+|+.||||+++|+|||||+
T Consensus 8 ~~~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~ 79 (188)
T 3ich_A 8 KKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG--------FGYKNSKFHRVIKDFMIQGGDF 79 (188)
T ss_dssp -CCSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECCT
T ss_pred CCCCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC--------ccccCCEEEEEECCCEEEcCCc
Confidence 44557889999999999999999999999999999999999999987654 7 99999999999999999997
Q ss_pred cCCCCCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC
Q 028464 110 TLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR 189 (208)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~ 189 (208)
..+++.++.++|++.+++|...++|+++|+|+|++.+|++++|||||++.++|+||++|+|||||++|||||++|++.++
T Consensus 80 ~~~~g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~ 159 (188)
T 3ich_A 80 TRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 159 (188)
T ss_dssp TTSSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred cCCCCCCCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCc
Confidence 77889999999999999998899999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-CCcccceEEEeeeeec
Q 028464 190 QS-GEPKSKVVISNSGEMA 207 (208)
Q Consensus 190 ~~-~~P~~~i~I~~cg~l~ 207 (208)
+. ++|.++|+|.+||+|+
T Consensus 160 ~~~~~P~~~v~I~~~~~l~ 178 (188)
T 3ich_A 160 DSRDKPLKDVIIADCGKIE 178 (188)
T ss_dssp CTTSCBSSCEEEEEEEEEE
T ss_pred CCCCeECCCEEEEEeEEEe
Confidence 65 5999999999999984
No 15
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=4.7e-53 Score=335.16 Aligned_cols=169 Identities=57% Similarity=1.006 Sum_probs=157.7
Q ss_pred ccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCC
Q 028464 36 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 115 (208)
Q Consensus 36 ~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~ 115 (208)
+.+++||||+.+++|+.|+|+||||++.||++|+||++||+++.|. .++..+|+|+.||||+|+|+|||||+..+++.
T Consensus 8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~ 85 (177)
T 1mzw_A 8 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred CCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence 3478999999999999999999999999999999999999887543 23455699999999999999999999878899
Q ss_pred CCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 028464 116 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP 194 (208)
Q Consensus 116 ~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P 194 (208)
+++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||||++|++.++ ++++|
T Consensus 86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P 165 (177)
T 1mzw_A 86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP 165 (177)
T ss_dssp CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 56899
Q ss_pred ccceEEEeeeee
Q 028464 195 KSKVVISNSGEM 206 (208)
Q Consensus 195 ~~~i~I~~cg~l 206 (208)
.++|+|.+||+|
T Consensus 166 ~~~v~I~~cG~l 177 (177)
T 1mzw_A 166 KLPVVISQCGEM 177 (177)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCCEEEEeceeC
Confidence 999999999987
No 16
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.3e-52 Score=332.56 Aligned_cols=164 Identities=57% Similarity=0.968 Sum_probs=156.2
Q ss_pred ccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCcCCCC
Q 028464 36 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGDG 114 (208)
Q Consensus 36 ~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~ 114 (208)
..+++||||+.+++|++|+|+||||++.||++|+||++||++++| + |+|+.||||+|+|+|||||+..+++
T Consensus 25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~g 96 (193)
T 3k2c_A 25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKG--------EGYKGSTFHRIIPGFMVQGGDYTAHNG 96 (193)
T ss_dssp -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------SSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccC--------CcccCCEEEEEeCCCEEEeCCCCCCCC
Confidence 457899999999999999999999999999999999999987654 5 9999999999999999999887889
Q ss_pred CCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCc
Q 028464 115 RGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEP 194 (208)
Q Consensus 115 ~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P 194 (208)
.++.+++++.+++|...++|+++|+|+|++.+|++++|||||++++.|+||++|+|||||++|||||++|++.++++++|
T Consensus 97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P 176 (193)
T 3k2c_A 97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQV 176 (193)
T ss_dssp SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCC
T ss_pred cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred c--cceEEEeeeeec
Q 028464 195 K--SKVVISNSGEMA 207 (208)
Q Consensus 195 ~--~~i~I~~cg~l~ 207 (208)
. ++|+|.+||+|+
T Consensus 177 ~~~~~v~I~~cG~l~ 191 (193)
T 3k2c_A 177 KKGYRIEIRDCGVLG 191 (193)
T ss_dssp CTTCCEEEEEEEECC
T ss_pred ccCccEEEEEceEeC
Confidence 9 999999999986
No 17
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=3.4e-51 Score=335.04 Aligned_cols=168 Identities=47% Similarity=0.851 Sum_probs=158.1
Q ss_pred cccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCC
Q 028464 37 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 116 (208)
Q Consensus 37 ~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 116 (208)
.+++||||+.++++++|+|+||||++.||++|+||++||+++++.. |+..+|+|+.||||+|+|+|||||+..+++.+
T Consensus 58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G 135 (229)
T 1z81_A 58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG 135 (229)
T ss_dssp TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence 4789999999999999999999999999999999999999876532 45568999999999999999999998788999
Q ss_pred CcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEE--cCHHHHHHHHhCCCCC--C
Q 028464 117 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQS--G 192 (208)
Q Consensus 117 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~--~ 192 (208)
++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||||+ +|||||++|++.+++. +
T Consensus 136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~ 215 (229)
T 1z81_A 136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY 215 (229)
T ss_dssp CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999998765 8
Q ss_pred CcccceEEEeeeee
Q 028464 193 EPKSKVVISNSGEM 206 (208)
Q Consensus 193 ~P~~~i~I~~cg~l 206 (208)
+|.++|+|.+||+|
T Consensus 216 ~P~~~V~I~~cG~l 229 (229)
T 1z81_A 216 KPKIPINVVECGEL 229 (229)
T ss_dssp CBSSCEEEEEEEEC
T ss_pred CCCCCeEEEeCeeC
Confidence 99999999999987
No 18
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=1.5e-51 Score=325.12 Aligned_cols=161 Identities=60% Similarity=1.060 Sum_probs=122.3
Q ss_pred cccEEEEEEEEC--C---EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCccc-ccCCEEEEecCCceEeecCCc
Q 028464 37 VTHKVYFDIEVG--G---KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFT 110 (208)
Q Consensus 37 ~~~~v~~di~v~--~---t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~G~~~ 110 (208)
++ +|||||.++ + |++|+|+||||++.||++|+||++||+|++| + |+|+.||||+|+|+|||||+.
T Consensus 2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~ 72 (172)
T 2c3b_A 2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG--------EGYRESTFHRIIPNFMIQGGDFT 72 (172)
T ss_dssp CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECC--
T ss_pred ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEeCCCEEEeCCcC
Confidence 56 899999998 6 5559999999999999999999999987654 6 999999999999999999966
Q ss_pred CCCCCCCcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEc--CHHHHHHHHhCC
Q 028464 111 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS--GMDVVRKIEAEG 188 (208)
Q Consensus 111 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~ 188 (208)
.+++.+++++|++.+++|...++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||||++ |||||++|++.+
T Consensus 73 ~~~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~ 152 (172)
T 2c3b_A 73 RGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG 152 (172)
T ss_dssp --------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCC
Confidence 688899999999999999889999999999999999999999999999999999999999999999 999999999998
Q ss_pred CCCC--CcccceEEEeeeee
Q 028464 189 RQSG--EPKSKVVISNSGEM 206 (208)
Q Consensus 189 ~~~~--~P~~~i~I~~cg~l 206 (208)
++.+ +|.++|+|.+||+|
T Consensus 153 t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 153 SSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp CTTSCCCSSSCCEEEEEEEC
T ss_pred CCCCCccCCCCeEEEeCeeC
Confidence 7765 99999999999987
No 19
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=1.2e-48 Score=321.81 Aligned_cols=171 Identities=30% Similarity=0.485 Sum_probs=147.1
Q ss_pred cccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccC---CCc----c--c-ccCCEEEEecCCceE
Q 028464 35 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS---GKP----L--Y-YKGSSFHRIIPSFMI 104 (208)
Q Consensus 35 ~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~---~~~----~--~-Y~g~~f~rv~~~~~i 104 (208)
...+++|||||.+++|++|+|+||||++.||++|+||++||++++.+... ++. + + |+|+.||||+++|||
T Consensus 11 ~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~Fmi 90 (234)
T 2ose_A 11 SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYI 90 (234)
T ss_dssp CCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEE
T ss_pred CCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEE
Confidence 34578999999999999999999999999999999999999976322100 011 3 6 999999999999999
Q ss_pred eecCCcCCCCCCCccccccc-----ccccccccccCCCeEEEEee----cCCCCCCceEEEEccC------CCCCCCCCc
Q 028464 105 QGGDFTLGDGRGGESIFGES-----FADENFKLKHTGPGVLSMAN----AGPDTNGSQFFITTVI------TSWLDGRHV 169 (208)
Q Consensus 105 q~G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~G~l~~~~----~~~~~~~sqF~Itl~~------~~~ld~~~~ 169 (208)
||||+..+++.+++++|++. ++ ++.++|+++|+|||++ .+|++++|||||++.+ .|+||++|+
T Consensus 91 QgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~t 168 (234)
T 2ose_A 91 VSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQV 168 (234)
T ss_dssp EECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSE
T ss_pred EcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCee
Confidence 99997778899999999886 55 4578999999999999 8899999999999999 999999999
Q ss_pred EEEEEEcCHHHHHHHHhCCCCC-CCcccceEEEeeeeec
Q 028464 170 VFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEMA 207 (208)
Q Consensus 170 vfG~Vi~G~~vl~~I~~~~~~~-~~P~~~i~I~~cg~l~ 207 (208)
|||+|++|||||++|++.+++. ++|.++|+|.+||+|+
T Consensus 169 VFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 169 VIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp EEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence 9999999999999999998765 8999999999999986
No 20
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=4e-48 Score=338.34 Aligned_cols=170 Identities=59% Similarity=1.034 Sum_probs=161.3
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccC-CCcccccCCEEEEecCCceEeecCCcCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 116 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~-~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~ 116 (208)
+++||||+.+++++.|+|+||||++.||+||+||++||++++|.+.. |+..+|+|+.||||+|+|+|||||+..++|.+
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g 94 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence 79999999999999999999999999999999999999998876543 55568999999999999999999999888999
Q ss_pred CcccccccccccccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 028464 117 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS 196 (208)
Q Consensus 117 ~~~~~~~~~~~e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~ 196 (208)
+.++||..+++|...++|+++|+|+|++.+|++++||||||+.+.|+||++|+|||+|++||+|+++|++.+++.++|..
T Consensus 95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~ 174 (370)
T 1ihg_A 95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAK 174 (370)
T ss_dssp CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESS
T ss_pred CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877799999
Q ss_pred ceEEEeeeeec
Q 028464 197 KVVISNSGEMA 207 (208)
Q Consensus 197 ~i~I~~cg~l~ 207 (208)
+|+|.+||++.
T Consensus 175 ~v~I~~~g~l~ 185 (370)
T 1ihg_A 175 LCVIAECGELK 185 (370)
T ss_dssp CEEEEEEEEEC
T ss_pred eEEEEEEEEec
Confidence 99999999985
No 21
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=1.4e-47 Score=299.23 Aligned_cols=147 Identities=48% Similarity=0.753 Sum_probs=137.8
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|+.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+. +++.+++++|+..+++|.
T Consensus 12 T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 80 (160)
T 2fu0_A 12 TTMGDIHISLFYKECKKTVQNFSVHSI----------NGYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEF 80 (160)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred ecCccEEEEEeCCCChHHHHHHHHHhc----------cCccCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCCccccc
Confidence 779999999999999999999999994 348999999999999999999986 778889999999999998
Q ss_pred c-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCCcccceEEEeeeeec
Q 028464 130 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPKSKVVISNSGEMA 207 (208)
Q Consensus 130 ~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P~~~i~I~~cg~l~ 207 (208)
. .++|+++|+|+|++.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+|.+++
T Consensus 81 ~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~ 160 (160)
T 2fu0_A 81 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160 (160)
T ss_dssp BTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred cCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence 7 588999999999999999999999999999999999999999999999999999999876 68999999999999864
No 22
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=2e-47 Score=299.97 Aligned_cols=153 Identities=50% Similarity=0.864 Sum_probs=141.5
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 117 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 117 (208)
++.|.++ |++|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+. +++.++
T Consensus 11 ~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg 74 (166)
T 2x7k_A 11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGRGG 74 (166)
T ss_dssp CSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH----------HTTTTTEECCEEETTTEEEECCTT-SSSSCC
T ss_pred CCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHh----------cCCCCCCEEEEEECCCEEEcCCCC-CCCCCC
Confidence 3566666 679999999999999999999999994 348999999999999999999987 788889
Q ss_pred ccccccccccccc-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCC-CCcc
Q 028464 118 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPK 195 (208)
Q Consensus 118 ~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~-~~P~ 195 (208)
.++|+..+++|.. .++|.++|+|+|++.+|++++|||||+++++|+||++|+|||+|++|||||++|++.+++. ++|.
T Consensus 75 ~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~ 154 (166)
T 2x7k_A 75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPV 154 (166)
T ss_dssp CCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBS
T ss_pred CccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcC
Confidence 9999999999984 7889889999999999999999999999999999999999999999999999999998755 7999
Q ss_pred cceEEEeeeee
Q 028464 196 SKVVISNSGEM 206 (208)
Q Consensus 196 ~~i~I~~cg~l 206 (208)
++|+|.+|.++
T Consensus 155 ~~i~I~~~~i~ 165 (166)
T 2x7k_A 155 DDVKIIKAYPS 165 (166)
T ss_dssp SCCEEEEEEEC
T ss_pred CCeEEEEEEEe
Confidence 99999999986
No 23
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=3.3e-47 Score=303.30 Aligned_cols=147 Identities=42% Similarity=0.699 Sum_probs=138.5
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|++|+|+||||++.||++|+||++||++ +||+|+.||||+|+|+|||||+. +++.++.++|+..+++|.
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 91 (185)
T 2poe_A 23 TNYGDLKFELFCSQCPKACKNFLALSAS----------GYYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEI 91 (185)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCC
T ss_pred ecCccEEEEEeCCCCcHHHHHHHHHhcc----------CCCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence 7899999999999999999999999953 48999999999999999999987 788889999999999997
Q ss_pred -cccccCCCeEEEEeecC----CCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCCcccceEEEee
Q 028464 130 -FKLKHTGPGVLSMANAG----PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPKSKVVISNS 203 (208)
Q Consensus 130 -~~~~~~~~G~l~~~~~~----~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P~~~i~I~~c 203 (208)
..++|+++|+|+|++.+ |++++|||||+++++|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+|
T Consensus 92 ~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~ 171 (185)
T 2poe_A 92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171 (185)
T ss_dssp CTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEE
T ss_pred cCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEE
Confidence 67889999999999998 99999999999999999999999999999999999999999865 4899999999999
Q ss_pred eeec
Q 028464 204 GEMA 207 (208)
Q Consensus 204 g~l~ 207 (208)
++++
T Consensus 172 ~i~~ 175 (185)
T 2poe_A 172 VIHS 175 (185)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9985
No 24
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=4.2e-47 Score=304.79 Aligned_cols=154 Identities=44% Similarity=0.759 Sum_probs=141.7
Q ss_pred EEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcc
Q 028464 40 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGES 119 (208)
Q Consensus 40 ~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~ 119 (208)
..++.+. |+.|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+. +++.++.+
T Consensus 19 ~~~v~l~---T~~G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~s 84 (197)
T 1zkc_A 19 SGYVRLH---TNKGDLNLELHCDLTPKTCENFIRLCK----------KHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGES 84 (197)
T ss_dssp CEEEEEE---ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEECCTT-SSSSCCCB
T ss_pred CcEEEEE---eCCccEEEEEcCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCCEEEcCCCC-CCCCCCCc
Confidence 3445555 779999999999999999999999994 348999999999999999999987 78888999
Q ss_pred cccccccccc-cccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCC--CCccc
Q 028464 120 IFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS--GEPKS 196 (208)
Q Consensus 120 ~~~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~--~~P~~ 196 (208)
+|+..+++|. ..++|+++|+|+|++.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++. ++|.+
T Consensus 85 i~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~ 164 (197)
T 1zkc_A 85 YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKE 164 (197)
T ss_dssp TTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSS
T ss_pred cCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCC
Confidence 9999999994 67889999999999999999999999999999999999999999999999999999998765 89999
Q ss_pred ceEEEeeeeec
Q 028464 197 KVVISNSGEMA 207 (208)
Q Consensus 197 ~i~I~~cg~l~ 207 (208)
+|+|.+|++++
T Consensus 165 ~i~I~~~~v~~ 175 (197)
T 1zkc_A 165 EIRIDATTVFV 175 (197)
T ss_dssp CCEEEEEEEEE
T ss_pred CeEEEEEEEEc
Confidence 99999999985
No 25
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=5.7e-47 Score=303.01 Aligned_cols=160 Identities=44% Similarity=0.691 Sum_probs=141.9
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCccc--CC---CcccccCCEEEEecCCceEeecCCcCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK--SG---KPLYYKGSSFHRIIPSFMIQGGDFTLG 112 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~--~~---~~~~Y~g~~f~rv~~~~~iq~G~~~~~ 112 (208)
+..|.++ |++|+|+||||++.||++|+||++||+|++++.. .+ +.++|+|+.||||+|+|+|||||+. +
T Consensus 23 ~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~-g 96 (191)
T 1w74_A 23 TATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-G 96 (191)
T ss_dssp SEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-S
T ss_pred CeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC-C
Confidence 4455554 7799999999999999999999999999887532 12 3579999999999999999999975 6
Q ss_pred CCCCCcccccccccccc-cccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEc--CHHHHHHHHhCCC
Q 028464 113 DGRGGESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS--GMDVVRKIEAEGR 189 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~~ 189 (208)
++.++ +++.+++|. ..++|+++|+|+|++.+|++++|||||++.+.|+||++|+|||||++ |||||++|++.++
T Consensus 97 ~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t 173 (191)
T 1w74_A 97 TGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT 173 (191)
T ss_dssp SSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCB
T ss_pred CCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCc
Confidence 66666 478899994 68899999999999999999999999999999999999999999999 9999999999987
Q ss_pred C-CCCcccceEEEeeeee
Q 028464 190 Q-SGEPKSKVVISNSGEM 206 (208)
Q Consensus 190 ~-~~~P~~~i~I~~cg~l 206 (208)
+ +++|.++|+|.+|+++
T Consensus 174 ~~~~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 174 DGNDRPTDPVVIESITIS 191 (191)
T ss_dssp CTTSCBSSCCEEEEEEEC
T ss_pred CCCCCcCCCeEEEEEEEC
Confidence 5 5899999999999985
No 26
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=4.5e-47 Score=300.33 Aligned_cols=145 Identities=52% Similarity=0.804 Sum_probs=136.8
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|++|+|+||||++.||++|+||++||+. +||+|+.||||+|+|+|||||+. +++.++.++|+..+++|.
T Consensus 28 t~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 96 (176)
T 2a2n_A 28 TSMGDIHTKLFPVECPKTVENFCVHSRN----------GYYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEF 96 (176)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred ecCccEEEEEeCCCChHHHHHHHHHhhc----------CccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcccccc
Confidence 7799999999999999999999999953 48999999999999999999986 778889999999999998
Q ss_pred c-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC--CCCcccceEEEeeee
Q 028464 130 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ--SGEPKSKVVISNSGE 205 (208)
Q Consensus 130 ~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~P~~~i~I~~cg~ 205 (208)
. .++|+++|+|+|++.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+|.+
T Consensus 97 ~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v 175 (176)
T 2a2n_A 97 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 175 (176)
T ss_dssp CTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred ccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence 7 688999999999999999999999999999999999999999999999999999999876 789999999999975
No 27
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=4.5e-47 Score=296.79 Aligned_cols=147 Identities=47% Similarity=0.729 Sum_probs=138.3
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|+.|+|+||||++.||++|+||++||++ +||+|+.||||+|+|+|||||+. +++.++.++|+..+++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~ 75 (161)
T 2ok3_A 7 TDVGDIKIEVFCERTPKTCENFLALCAS----------NYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEY 75 (161)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred eCCccEEEEEcCCCCcHHHHHHHHHhhh----------cccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccccc
Confidence 7899999999999999999999999954 38999999999999999999987 778889999999999997
Q ss_pred c-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCC--CCcccceEEEeeeee
Q 028464 130 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS--GEPKSKVVISNSGEM 206 (208)
Q Consensus 130 ~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~--~~P~~~i~I~~cg~l 206 (208)
. .++|+++|+|+|++.+|++++|||||+++++|+||++|+|||||++|||||++|++.+++. ++|.++|+|.+|.++
T Consensus 76 ~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~ 155 (161)
T 2ok3_A 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_dssp CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred CcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe
Confidence 5 6889999999999999999999999999999999999999999999999999999998654 799999999999998
Q ss_pred c
Q 028464 207 A 207 (208)
Q Consensus 207 ~ 207 (208)
+
T Consensus 156 ~ 156 (161)
T 2ok3_A 156 A 156 (161)
T ss_dssp C
T ss_pred c
Confidence 5
No 28
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=9.1e-47 Score=302.79 Aligned_cols=154 Identities=41% Similarity=0.699 Sum_probs=140.9
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 117 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 117 (208)
+..|.++ |++|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+. +++.++
T Consensus 38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Y~g~~FhRVi~~f~iQgGd~~-~~g~gg 101 (196)
T 2b71_A 38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCE----------MGFYDNTIFHRVIPNFVIQGGDPT-GTGKGG 101 (196)
T ss_dssp SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCEEEEEeCCcEEEcCCCC-CCCCCC
Confidence 4566666 679999999999999999999999994 348999999999999999999987 788889
Q ss_pred cccccccccccc-cccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCCcc
Q 028464 118 ESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPK 195 (208)
Q Consensus 118 ~~~~~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P~ 195 (208)
.++|+..+++|. ..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||||++|||||++|++.+++ +++|.
T Consensus 102 ~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~ 181 (196)
T 2b71_A 102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI 181 (196)
T ss_dssp CBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBS
T ss_pred CccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCC
Confidence 999999999995 5788989999999999999999999999999999999999999999999999999999865 58999
Q ss_pred cceEEEeeeeec
Q 028464 196 SKVVISNSGEMA 207 (208)
Q Consensus 196 ~~i~I~~cg~l~ 207 (208)
++|+|.+|++++
T Consensus 182 ~~i~I~~~~i~~ 193 (196)
T 2b71_A 182 FDLKILRTSTAV 193 (196)
T ss_dssp SCCEEEEEEC--
T ss_pred CCeEEEEEEEec
Confidence 999999999875
No 29
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=303.03 Aligned_cols=154 Identities=49% Similarity=0.855 Sum_probs=142.2
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 117 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 117 (208)
+.+|.++ |++|+|+||||++.||++|+||++||+ .+||+++.||||+|+|+||+||+. +++.++
T Consensus 11 ~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~F~iQgGd~~-~~g~gg 74 (203)
T 2k7n_A 11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGRGG 74 (203)
T ss_dssp CSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHH----------HTCGGGCEEEEEETTTEEEEECSS-SSSSCC
T ss_pred CCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHh----------cCccCCCEEEEEeCCcEEEcCCCC-CCCCCC
Confidence 3567666 679999999999999999999999994 348999999999999999999987 778888
Q ss_pred ccccccccccccc-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCC-CCCcc
Q 028464 118 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPK 195 (208)
Q Consensus 118 ~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P~ 195 (208)
.++|+..+++|.. .++|.++|+|+|++.+|++++|||||++.++|+||++|+|||||++|||||++|++.+++ +++|.
T Consensus 75 ~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~ 154 (203)
T 2k7n_A 75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPV 154 (203)
T ss_dssp CTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEEC
T ss_pred CccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcC
Confidence 9999999999974 788988999999999999999999999999999999999999999999999999999865 47999
Q ss_pred cceEEEeeeeec
Q 028464 196 SKVVISNSGEMA 207 (208)
Q Consensus 196 ~~i~I~~cg~l~ 207 (208)
++|+|.+|++++
T Consensus 155 ~~V~I~~~~v~~ 166 (203)
T 2k7n_A 155 DDVKIIKAYPSG 166 (203)
T ss_dssp CCCBEEEEEECC
T ss_pred CCeEEEEEEEEe
Confidence 999999999985
No 30
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=2.1e-46 Score=302.46 Aligned_cols=154 Identities=34% Similarity=0.556 Sum_probs=135.2
Q ss_pred EEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeec-----CCcCCCC
Q 028464 40 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGG-----DFTLGDG 114 (208)
Q Consensus 40 ~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G-----~~~~~~~ 114 (208)
+.++.+. |+.|+|+||||++.||++|+||++||+ .+||+|+.||||+++|+|||| |+. +++
T Consensus 6 ~~~v~l~---T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g 71 (201)
T 3bo7_A 6 KGYLRIV---TTQGSLNIELHADMAPRACDSFLRLCA----------VKYFDDTIFHRCIRNFMIQGGRAELRQPS-KKK 71 (201)
T ss_dssp CEEEEEE---ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEECCGGGCCC-----
T ss_pred ceEEEEE---eCCCCEEEEEcCCCCcHHHHHHHHHHh----------cCccCCCEEEEeeCCCEEEcCcccccCCC-CCC
Confidence 3455555 779999999999999999999999995 348999999999999999999 987 778
Q ss_pred CCCcccc-------cccccccc-cccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHHh
Q 028464 115 RGGESIF-------GESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA 186 (208)
Q Consensus 115 ~~~~~~~-------~~~~~~e~-~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~ 186 (208)
.++.++| +..+++|. ..++|+.+|+|+|++++|++++|||||++.++|+||++|+|||+|++|||||++|++
T Consensus 72 ~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~ 151 (201)
T 3bo7_A 72 EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEK 151 (201)
T ss_dssp ---CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTT
T ss_pred CCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHh
Confidence 8888888 88899994 678898999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCcccceEEEeeeeec
Q 028464 187 EGRQS-GEPKSKVVISNSGEMA 207 (208)
Q Consensus 187 ~~~~~-~~P~~~i~I~~cg~l~ 207 (208)
.+++. ++|.++|+|.+|++|+
T Consensus 152 ~~t~~~~~P~~~i~I~~~~v~~ 173 (201)
T 3bo7_A 152 LETDKKDKPLKPPKVEEIIVFK 173 (201)
T ss_dssp CCBCTTSCBSSCCBEEEEEEEE
T ss_pred CCcCCCCCcCCCeEEEEEEEEc
Confidence 98754 8999999999999985
No 31
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=292.98 Aligned_cols=158 Identities=37% Similarity=0.653 Sum_probs=142.8
Q ss_pred cccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCC
Q 028464 33 ELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 112 (208)
Q Consensus 33 ~~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~ 112 (208)
..++.+.+|+++ |++|+|+||||++.||++|+||++||+. +||+|+.||||+|+|+|||||+. +
T Consensus 19 ~~~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~-~ 82 (185)
T 2hq6_A 19 SEPPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCLE----------AYYDNTIFHRVVPGFIVQGGDPT-G 82 (185)
T ss_dssp CCCCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHT----------TTTTTEECCEEETTTEEEECCTT-S
T ss_pred cCCCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhhc----------CccCCCEEEEEECCCEEEcCCCC-C
Confidence 445567888888 5699999999999999999999999953 48999999999999999999987 7
Q ss_pred CCCCCccccccccccccc-ccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHH--HHHHhCCC
Q 028464 113 DGRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVV--RKIEAEGR 189 (208)
Q Consensus 113 ~~~~~~~~~~~~~~~e~~-~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl--~~I~~~~~ 189 (208)
++.++.++|++.+++|.. .++|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ |++++ ++|++.++
T Consensus 83 ~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~ 161 (185)
T 2hq6_A 83 TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDI 161 (185)
T ss_dssp SSSCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCB
T ss_pred CCCCCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCc
Confidence 788889999999999976 678899999999999999999999999999999999999999998 88774 67888776
Q ss_pred -CCCCcccceEEEeeeeec
Q 028464 190 -QSGEPKSKVVISNSGEMA 207 (208)
Q Consensus 190 -~~~~P~~~i~I~~cg~l~ 207 (208)
++++|.++|+|.+|++|+
T Consensus 162 ~~~~~P~~~v~I~~~~v~~ 180 (185)
T 2hq6_A 162 DDDERPHNPHKIKSCEVLF 180 (185)
T ss_dssp CTTSCBSSCCEEEEEEEEE
T ss_pred CCCCCCCCCeEEEEEEEeC
Confidence 568999999999999985
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=2.8e-45 Score=288.04 Aligned_cols=152 Identities=32% Similarity=0.493 Sum_probs=134.2
Q ss_pred ccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCC
Q 028464 38 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 117 (208)
Q Consensus 38 ~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~ 117 (208)
+++|+++ |++|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+....+
T Consensus 4 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--- 65 (166)
T 1v9t_A 4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ--- 65 (166)
T ss_dssp SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEESSBCTTCC---
T ss_pred CeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhc----------cCCCCCCEEEEEECCcEEEcCCcCcCCC---
Confidence 4677777 679999999999999999999999994 3499999999999999999999874332
Q ss_pred cccccccccccccccccCCCeEEEEeec-CCCCCCceEEEEccCCCCCCCC-----CcEEEEEEcCHHHHHHHHhCCCCC
Q 028464 118 ESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-----HVVFGKVLSGMDVVRKIEAEGRQS 191 (208)
Q Consensus 118 ~~~~~~~~~~e~~~~~~~~~G~l~~~~~-~~~~~~sqF~Itl~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~~ 191 (208)
...++..+++|.....|+.+|+|+|++. +|++++|||||++.+.|+||++ |+|||+|++|||||++|++.+++.
T Consensus 66 ~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~ 145 (166)
T 1v9t_A 66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD 145 (166)
T ss_dssp BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCC
Confidence 2235678889987667778999999997 5999999999999999999998 999999999999999999998653
Q ss_pred -----CCcccceEEEeeeeec
Q 028464 192 -----GEPKSKVVISNSGEMA 207 (208)
Q Consensus 192 -----~~P~~~i~I~~cg~l~ 207 (208)
++|.++|+|.+|++++
T Consensus 146 ~~~~~~~P~~~v~I~~~~v~~ 166 (166)
T 1v9t_A 146 VGPYQNVPSKPVVILSATVLP 166 (166)
T ss_dssp ETTEEEEESSCCBEEEEEECC
T ss_pred CCccCCCcCCCeEEEEEEEeC
Confidence 7899999999999875
No 33
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=2.7e-45 Score=287.61 Aligned_cols=145 Identities=34% Similarity=0.537 Sum_probs=130.1
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|++|+|+||||++.||++|+||++||+ .+||+|+.||||+|+|+|||||+..+. +.++++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~ 72 (164)
T 1lop_A 6 TNHGDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEA 72 (164)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCC
T ss_pred eCCCCEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccc
Confidence 789999999999999999999999994 348999999999999999999987433 4456788899998
Q ss_pred cccccCCCeEEEEeec-CCCCCCceEEEEccCCCCCCCC--------CcEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 028464 130 FKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR--------HVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK 195 (208)
Q Consensus 130 ~~~~~~~~G~l~~~~~-~~~~~~sqF~Itl~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~ 195 (208)
....++.+|+|+|++. +|++++|||||++.+.|+||++ |+|||+|++|||||++|++.+++ +++|.
T Consensus 73 ~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~ 152 (164)
T 1lop_A 73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_dssp CSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEES
T ss_pred ccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcC
Confidence 7544557999999975 7999999999999999999998 99999999999999999999875 37999
Q ss_pred cceEEEeeeeec
Q 028464 196 SKVVISNSGEMA 207 (208)
Q Consensus 196 ~~i~I~~cg~l~ 207 (208)
++|+|.+|++++
T Consensus 153 ~~v~I~~~~v~~ 164 (164)
T 1lop_A 153 EDVIIESVTVSE 164 (164)
T ss_dssp SCCEEEEEEECC
T ss_pred CCeEEEEEEEeC
Confidence 999999999985
No 34
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=3.9e-44 Score=281.90 Aligned_cols=144 Identities=34% Similarity=0.473 Sum_probs=127.7
Q ss_pred EEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCcccccccccccc
Q 028464 50 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 129 (208)
Q Consensus 50 t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~ 129 (208)
|++|+|+||||++.||++|+||++||+. +||+|+.||||+++|+|||||+.... +...++..+++|.
T Consensus 10 T~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~~~~~~~E~ 76 (167)
T 3s6m_A 10 TNHGVIKLELDEAKAPKTVENFLNYVKK----------GHYDGTIFHRVINGFMIQGGGFEPGL---KQKPTDAPIANEA 76 (167)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHH----------TTTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCG
T ss_pred eCCceEEEEEeCCCCcHHHHHHHHHhhh----------cccCCCEeEEecCCcEEEeccccCCC---CCCCCCCccCCcc
Confidence 7899999999999999999999999953 48999999999999999999987432 2234567788886
Q ss_pred cccccCCCeEEEEee-cCCCCCCceEEEEccCCCCCCCC--------CcEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 028464 130 FKLKHTGPGVLSMAN-AGPDTNGSQFFITTVITSWLDGR--------HVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK 195 (208)
Q Consensus 130 ~~~~~~~~G~l~~~~-~~~~~~~sqF~Itl~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~ 195 (208)
....++.+|+|+|++ .+|++++|||||++.+.++||++ |+|||+|++|||||++|++.+++ +++|.
T Consensus 77 ~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~ 156 (167)
T 3s6m_A 77 NNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPN 156 (167)
T ss_dssp GGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBS
T ss_pred cccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcC
Confidence 655556899999999 57999999999999999999998 99999999999999999999865 47999
Q ss_pred cceEEEeeeee
Q 028464 196 SKVVISNSGEM 206 (208)
Q Consensus 196 ~~i~I~~cg~l 206 (208)
++|+|.+|.+|
T Consensus 157 ~~v~I~~~~il 167 (167)
T 3s6m_A 157 DDVVIEKAVVV 167 (167)
T ss_dssp SCCEEEEEEEC
T ss_pred CCeEEEEEEEC
Confidence 99999999886
No 35
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=6.9e-44 Score=292.85 Aligned_cols=158 Identities=32% Similarity=0.542 Sum_probs=140.8
Q ss_pred cccccccEEEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCC
Q 028464 33 ELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 112 (208)
Q Consensus 33 ~~~~~~~~v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~ 112 (208)
..++.+.+|+|+ |++|+|+||||++.||++|+||++||++ +||+|+.||||+++|+|||||+. +
T Consensus 16 ~~p~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~----------g~Ydgt~FhRVi~~FmiQgGdp~-~ 79 (232)
T 3bkp_A 16 FQGSTRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCLE----------GYYVNTIFHRVVKDFIVQGGDPT-G 79 (232)
T ss_dssp CCCSCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHH----------TTTTTCBEEEEETTTEEEECCTT-S
T ss_pred ccCCCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhhc----------CccCCCEEEEEeCCCEEEcCCCC-C
Confidence 335567788887 6799999999999999999999999954 48999999999999999999987 7
Q ss_pred CCCCCcccc--ccccccccc-ccccCCCeEEEEeecCC--------------CCCCceEEEEccCCCCCCCCCcEEEEEE
Q 028464 113 DGRGGESIF--GESFADENF-KLKHTGPGVLSMANAGP--------------DTNGSQFFITTVITSWLDGRHVVFGKVL 175 (208)
Q Consensus 113 ~~~~~~~~~--~~~~~~e~~-~~~~~~~G~l~~~~~~~--------------~~~~sqF~Itl~~~~~ld~~~~vfG~Vi 175 (208)
++.++.++| +..+++|.. .++|+.+|+|+|++.++ ++++|||||+++++|+||++|+|||+|+
T Consensus 80 ~G~Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv 159 (232)
T 3bkp_A 80 TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT 159 (232)
T ss_dssp SSSCCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC
T ss_pred CCCCCCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE
Confidence 888899999 889999975 68889999999999986 6999999999999999999999999999
Q ss_pred cCHHH--HHHHHhCCCC-CCCcccceEEEeeeeec
Q 028464 176 SGMDV--VRKIEAEGRQ-SGEPKSKVVISNSGEMA 207 (208)
Q Consensus 176 ~G~~v--l~~I~~~~~~-~~~P~~~i~I~~cg~l~ 207 (208)
||++ +++|++.+++ +++|.++|+|.+|++|+
T Consensus 160 -g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~ 193 (232)
T 3bkp_A 160 -GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLW 193 (232)
T ss_dssp -GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEE
T ss_pred -eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEc
Confidence 6655 8999999864 68999999999999985
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-38 Score=273.09 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=128.8
Q ss_pred cccccccccEEEEEEEEC-----CEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEe
Q 028464 31 REELEKVTHKVYFDIEVG-----GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQ 105 (208)
Q Consensus 31 ~~~~~~~~~~v~~di~v~-----~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq 105 (208)
....|.++.++++++.++ .++.|+|+||||++.||+||+||++||+ .+||+|+.|||| ++|+||
T Consensus 161 y~~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~----------~GfYdGt~FHRV-~gFmIQ 229 (369)
T 3rfy_A 161 YRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVE----------RHFYDGMEIQRS-DGFVVQ 229 (369)
T ss_dssp CTTSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHH----------TTTTTTEECEEE-EEEEEC
T ss_pred cccCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCeeeee-CCeeEe
Confidence 345677888988888874 2359999999999999999999999994 449999999999 999999
Q ss_pred ecCCcCCCCCC---------------------Cccccccccccccc-----ccccCCCeEEEEeec--CCCCCCceEEEE
Q 028464 106 GGDFTLGDGRG---------------------GESIFGESFADENF-----KLKHTGPGVLSMANA--GPDTNGSQFFIT 157 (208)
Q Consensus 106 ~G~~~~~~~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~G~l~~~~~--~~~~~~sqF~It 157 (208)
|||+. +++.+ +.++|+..+.+|++ .++|+.+|+|+|+++ +||+++|||||+
T Consensus 230 gGDp~-g~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFIt 308 (369)
T 3rfy_A 230 TGDPE-GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWL 308 (369)
T ss_dssp CCCCC-CCCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCC
T ss_pred cCCCC-CCCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEE
Confidence 99987 45444 34566666776643 678999999999998 799999999999
Q ss_pred c-------cCCCCCCCCCcEEEEEEcCHHHHHHHHhCCCCCCCcccceEEEe
Q 028464 158 T-------VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN 202 (208)
Q Consensus 158 l-------~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i~I~~ 202 (208)
+ .+.++||++|+|||+|++|||||++|++. .....|+|.+
T Consensus 309 l~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G-----D~I~sv~I~~ 355 (369)
T 3rfy_A 309 LKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG-----DVIESIQVVS 355 (369)
T ss_dssp CEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT-----CEEEEEEEEE
T ss_pred ecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhCC-----CceEEEEEec
Confidence 9 46899999999999999999999999863 3345555554
No 37
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=96.36 E-value=0.029 Score=43.45 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=68.2
Q ss_pred EEEEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCC--ceEeecCCcCCCCCCCc
Q 028464 41 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGE 118 (208)
Q Consensus 41 v~~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~G~~~~~~~~~~~ 118 (208)
-|++|++..... +++.+|..+.||+||+.|+++. =|.+..+|-..-+ .|+--++...
T Consensus 22 r~i~itl~~~g~-~~~A~Lldd~APkTcaA~~~~L-------------P~~~~viHarwSGeeVy~~lp~f~~------- 80 (188)
T 3kop_A 22 RYINITLEKRGV-TCKALLLDDVAPRTSKAVWDAL-------------PQSSQVFHGKYARNEIYNLVPAFAP------- 80 (188)
T ss_dssp CEEEEEETTTTE-EEEEEECTTTSHHHHHHHHHHC-------------CEEEECEECSSSSSEEEEEEECCSS-------
T ss_pred eEEEEEEecCCe-EEEEEEccccChHHHHHHHHhC-------------CCCcceEEEEEecceEEEECCcccc-------
Confidence 477777752221 4889999999999999999987 2555555544433 2333333210
Q ss_pred ccccccccccccccccCCCeEEEEeec-----C-------------CCCCCceEEEEccCCCC-CCCC-----CcEEEEE
Q 028464 119 SIFGESFADENFKLKHTGPGVLSMANA-----G-------------PDTNGSQFFITTVITSW-LDGR-----HVVFGKV 174 (208)
Q Consensus 119 ~~~~~~~~~e~~~~~~~~~G~l~~~~~-----~-------------~~~~~sqF~Itl~~~~~-ld~~-----~~vfG~V 174 (208)
...+.|+.. .+-.+|-|++-.. + ..+...++.|-.+.+.. +.++ -.+|++|
T Consensus 81 ----~~~g~EN~T-~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~TI 155 (188)
T 3kop_A 81 ----KEPGAENTT-VTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATI 155 (188)
T ss_dssp ----SCCCSCSEE-SSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEEE
T ss_pred ----cCCCcCCCC-CCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEEE
Confidence 112334332 2223666665311 1 01123577777765542 2222 3799999
Q ss_pred EcCHHHHHHHH
Q 028464 175 LSGMDVVRKIE 185 (208)
Q Consensus 175 i~G~~vl~~I~ 185 (208)
++|+|-+.++-
T Consensus 156 veGle~la~~c 166 (188)
T 3kop_A 156 VEGLDEMAAAC 166 (188)
T ss_dssp EESHHHHHHHH
T ss_pred ecCHHHHHHHH
Confidence 99999887763
No 38
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=94.58 E-value=0.036 Score=42.06 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=60.5
Q ss_pred EEEEECCEEeeEEEEEEeCCCCcchHHHHHHhhhcCCCcccCCCcccccCCEEEEecCCceEeecCCcCCCCCCCccccc
Q 028464 43 FDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG 122 (208)
Q Consensus 43 ~di~v~~t~~G~i~ieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~ 122 (208)
+.|.+++ ..++++|+.+.||++|+.|+++.- +... +.+-- +-.+ + +...
T Consensus 32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------------l~~~-~~~~g-~E~y-~-~lp~----------- 80 (153)
T 2nnz_A 32 LRIRFES---AECEVELYEEWAPETVRAIADALP-------------IKST-ANRWG-DEIY-F-TTQV----------- 80 (153)
T ss_dssp EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------------EEEE-EEEET-TEEE-E-CCSC-----------
T ss_pred EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------------cEEE-HHhhC-CcEE-E-ECCC-----------
Confidence 4556665 569999999999999999999871 2221 12211 1000 0 1000
Q ss_pred ccccc-cccccccCCCeEEEEeecCCCCCCceEEEEccCCCCCCC------CCcEEEEEEcCHHHHHHH
Q 028464 123 ESFAD-ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDG------RHVVFGKVLSGMDVVRKI 184 (208)
Q Consensus 123 ~~~~~-e~~~~~~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~------~~~vfG~Vi~G~~vl~~I 184 (208)
.++. |+ .......|-|+.-..+. .+.|.+++.|...+ .-.+||+|.+|++.|.++
T Consensus 81 -~l~~~en-~~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 81 -AVEKEEN-SKDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp -CCCCSSC-CBCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred -CCCCCCC-CcccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 0111 21 12233578888766542 38888887754322 247899999997777654
No 39
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=81.24 E-value=7.4 Score=28.54 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCeEEEEeecCCCCCCceEEEEccCCCCCCC------CCcEEEEEEcCHHHHHHH
Q 028464 136 GPGVLSMANAGPDTNGSQFFITTVITSWLDG------RHVVFGKVLSGMDVVRKI 184 (208)
Q Consensus 136 ~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~------~~~vfG~Vi~G~~vl~~I 184 (208)
..|-|+.-..+. .|.|.+++.|...+ .-.+||||.+|++.+.++
T Consensus 74 ~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 74 EIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp CTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred CCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 468888766643 48888888764443 257899999997766554
No 40
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=41.36 E-value=5.6 Score=30.63 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=0.0
Q ss_pred CcccchhHHHH
Q 028464 1 MATKTRLVSVA 11 (208)
Q Consensus 1 ~~~~~~~~~~~ 11 (208)
|+.+++++.+.
T Consensus 2 M~~m~~~~~~~ 12 (269)
T 4i62_A 2 MNKMKKVLMTM 12 (269)
T ss_dssp -----------
T ss_pred cHHHHHHHHHH
Confidence 55445544333
No 41
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=33.02 E-value=19 Score=30.95 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred cCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHH
Q 028464 134 HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIE 185 (208)
Q Consensus 134 ~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~ 185 (208)
..++|.+.+.+..-.....|.-|++.+.|. |++..|+|+|. +-+.+|+-|.
T Consensus 325 ~r~rGdItIdN~~ygRY~GElQI~l~dlp~-d~r~NVVG~I~~edl~LLd~I~ 376 (385)
T 1x7f_A 325 LQERGQVVIGNNSFGKYKGELQIILKEMPI-DERKNIVGTIAEEELFLLDYVG 376 (385)
T ss_dssp CBCTTEEEEECGGGGGGTTCEEEECSCBCC-CTTEEEEEEECGGGGGGGGGCC
T ss_pred cccCCcEEEeCCCccccccEeeEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 346899999987655566799999999874 77899999998 4677777764
No 42
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=32.01 E-value=17 Score=31.11 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=41.5
Q ss_pred cCCCeEEEEeecCCCCCCceEEEEccCCCCCCCCCcEEEEEE-cCHHHHHHHH
Q 028464 134 HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIE 185 (208)
Q Consensus 134 ~~~~G~l~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~ 185 (208)
...+|.+.+.+..-.....|.-|++.+.| -|++..|+|+|. +-+.+|+-|.
T Consensus 299 ~r~rGdItIdN~~ygrY~GElQI~l~dlp-~d~r~NVVG~I~~edl~LLd~I~ 350 (372)
T 2p0o_A 299 ARPVGTVTIDNEKYGRYMGEIQVTLVDLP-KDEKVNTITRIIDKDQTILPLIK 350 (372)
T ss_dssp CBCTTEEEEECGGGGGGTTCEEEESSCBC-CCTTEEEEEEBCGGGGGGGGGCC
T ss_pred cccCCeEEEeCCCccccccEeeEEcccCC-CCCCeEEEEEECHHHHHHHHhcC
Confidence 34689999998765555679999999988 477899999998 4778888775
Done!