BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028465
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2
OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1
Length = 210
Score = 246 bits (628), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/211 (62%), Positives = 162/211 (76%), Gaps = 12/211 (5%)
Query: 1 MASADSSSNSNNDAN-DTETNPN----PIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAG 55
MA+ DSS+ + D N D+++N N + +SSKA+V +P+ AVCL +F GDA G
Sbjct: 1 MAANDSSNAIDIDGNLDSDSNLNTDGDEATDNDSSKALVTIPAP--AVCLFRFAGDAAGG 58
Query: 56 AFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAG 115
A MGSIFGYG+GLFKKKG +GSF +AG AKTFAVLSGVHSLVVC LK++RGKDD IN G
Sbjct: 59 AVMGSIFGYGSGLFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVG 118
Query: 116 VAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRSGQF---- 171
VAGCCTG+ALSFPG P ALL SC++ GAFSFI++GLNK+Q ALAHS+S + ++G F
Sbjct: 119 VAGCCTGLALSFPGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHH 178
Query: 172 -LVPRSLALPLPDELKDAFSSFCKSLRKPIK 201
+P SLALP+P+E+K AFSSFCKSL KP K
Sbjct: 179 RALPLSLALPIPEEIKGAFSSFCKSLAKPRK 209
>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3
OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1
Length = 214
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/202 (63%), Positives = 157/202 (77%), Gaps = 12/202 (5%)
Query: 3 SADSSSNSNNDANDTETNPNPIPNPNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIF 62
S DS S N DAND + + SSKA+V +P+ AVCL++F GDA +GAFMGS+F
Sbjct: 15 SLDSDSKPNRDANDMTDHDS------SSKALV-IPAP--AVCLVRFAGDAASGAFMGSVF 65
Query: 63 GYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
GYG+GLFKKKG +GSF +AG AKTFAVLSGVHSLVVC LK++RGKDD IN GVAGCCTG
Sbjct: 66 GYGSGLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTG 125
Query: 123 IALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLS--RQSRSGQFLVP-RSLAL 179
+ALSFPG P A+L SC++ GAFSFI++GLNK+Q ALAHS+S +Q+RS Q +P SLA+
Sbjct: 126 LALSFPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSFRQQTRSPQHDLPLLSLAI 185
Query: 180 PLPDELKDAFSSFCKSLRKPIK 201
P+ DE+K AFSSFC SL KP K
Sbjct: 186 PIHDEIKGAFSSFCNSLTKPKK 207
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%)
Query: 80 EAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCI 139
A S AK F + GV S CC++ LR K+D+ N AGC TG L+ P A L C
Sbjct: 99 RAWSSAKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGPQAALVGCA 158
Query: 140 SLGAFSFIMD 149
AFS +D
Sbjct: 159 GFAAFSAAID 168
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 71 KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
K+ ++ F + G S AK F + ++S V C ++ LR K+D+ N AGC TG L+
Sbjct: 102 KQQIKIQFADMGRRAYSSAKNFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGLA 161
Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
+ PSA L C AFS +D
Sbjct: 162 YKSGPSAALIGCAGFAAFSTAID 184
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 71 KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
K+ ++ F + G S AK F + ++S V C ++ LR K+D+ N AGC TG L+
Sbjct: 97 KQQIKIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGLA 156
Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
+ P A L C AFS +D
Sbjct: 157 YKSGPQAALVGCAGFAAFSTAID 179
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 81 AGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCIS 140
A S AK F + +++ V C ++ LR K+D+ N AGC TG L++ P A L C
Sbjct: 108 AYSSAKNFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGGLAYKSGPQAALVGCAG 167
Query: 141 LGAFSFIMDGLNKQQ 155
AFS +D K +
Sbjct: 168 FAAFSAAIDMYMKSE 182
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 71 KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
K+ ++ F + G S AK F + V+S V C ++ LR K D+ N AGC TG L+
Sbjct: 83 KQQMKLQFSDMGKRTYSSAKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLA 142
Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
P A L C AFS +D
Sbjct: 143 IRAGPQAALVGCAGFAAFSTAID 165
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 86 KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFS 145
KTFAV+ V S C +++ R K D +N +AGC TG ++S G P A C FS
Sbjct: 103 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFATFS 162
Query: 146 FIMD 149
+++
Sbjct: 163 VLIE 166
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 86 KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFS 145
KTFAV+ V S C +++ R K D +N +AGC TG ++S G P A C FS
Sbjct: 72 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFAIFS 131
Query: 146 FIMD 149
+++
Sbjct: 132 VLIE 135
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 71 KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126
K+ L+ F + G S AK FA + + S + C ++ LR K+D+ N AGC TG L+
Sbjct: 102 KEQLKHGFKDMGQRSYSTAKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGAILA 161
Query: 127 FPGEPSALLTSCISLGAFSFIMD 149
G P A C AFS +D
Sbjct: 162 KNGGPQAAAVGCAGFAAFSAAID 184
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
S + FA + V+S V CC++ R K+D+ N AG TG L+ P+A+L ++
Sbjct: 110 SSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFA 169
Query: 143 AFSFIMDGLNKQQPA 157
AFS +D + PA
Sbjct: 170 AFSGAIDWWLRSAPA 184
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
S + FA + V+S V CC++ R K+D+ N AG TG L+ P+A+L ++
Sbjct: 110 SSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFA 169
Query: 143 AFSFIMDGLNKQQPA 157
AFS +D + PA
Sbjct: 170 AFSGAIDWWLRSAPA 184
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 68 LFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127
+ K G RG S+AK FA++ + S C ++ RGK D N+ ++GC TG A+ F
Sbjct: 114 VLKDMGQRGM-----SYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGF 168
Query: 128 PGEPSALLTSCISLGAFSFIMD 149
A + C AFS +D
Sbjct: 169 RAGLKAGVIGCGGFAAFSAAID 190
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 68 LFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127
+ K G RG S+AK FA++ + S C ++ RGK D N+ ++GC TG A+ F
Sbjct: 106 VLKDMGQRGM-----SYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGF 160
Query: 128 PGEPSALLTSCISLGAFSFIMD 149
A C AFS ++D
Sbjct: 161 RAGLKAGALGCGGFAAFSAVID 182
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 68 LFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127
+ K G RG S+AK FA++ + S C ++ RGK D N+ ++GC TG A+ F
Sbjct: 114 VLKDMGQRGM-----SYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGF 168
Query: 128 PGEPSALLTSCISLGAFSFIMD 149
A C AFS +D
Sbjct: 169 RAGVKAGAIGCGGFAAFSAAID 190
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
S+AK FA++ + S C ++ RGK D N+ ++GC TG A+ F A + C
Sbjct: 114 SYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGLKAGVLGCGGFA 173
Query: 143 AFSFIMD 149
AFS ++D
Sbjct: 174 AFSAVID 180
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 68 LFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127
+ K G RG S+AK FA++ + S C ++ RGK D N+ ++GC TG A+ F
Sbjct: 112 VLKDMGQRGM-----SYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGF 166
Query: 128 PGEPSALLTSCISLGAFSFIMD 149
A C AFS +D
Sbjct: 167 RAGVKAGAIGCGGFAAFSAAID 188
>sp|P87146|TIM22_SCHPO Mitochondrial import inner membrane translocase subunit tim22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim22 PE=3 SV=1
Length = 175
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLG 142
S AK F +L ++S CC++ R K D+ NA AG TG AL+ P A++ G
Sbjct: 102 STAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGGAGFG 161
Query: 143 AFSF 146
FS+
Sbjct: 162 LFSY 165
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 69 FKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFP 128
FK++G G AK+ ++++ V++ C +++ RG+ D +N AGC TG +
Sbjct: 97 FKEQGRSGL-----RSAKSLSIITLVYTGTECAIEKARGRTDKLNPIYAGCTTGAVFAGR 151
Query: 129 GEPSALLTSCISLGAFSFIMD 149
P A + C+ F IMD
Sbjct: 152 AGPMAAVGGCVGFAVFGMIMD 172
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 68 LFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127
+ K G RG S+AK FA++ + S C ++ RG D N+ ++GC TG A+ F
Sbjct: 114 VLKDMGQRGM-----SYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGF 168
Query: 128 PGEPSALLTSCISLGAFSFIMD 149
A C AFS +D
Sbjct: 169 RAGLKAGAIGCGGFAAFSAAID 190
>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Bos taurus GN=TIMM17B PE=2 SV=1
Length = 172
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 44 CLMQFTGDAFAGAFMGSIFGY-GAGLFKKKGLRGSFGEAGSHAK----TFAVLSGVHSLV 98
C FT G +I G+ A + + LRGS A +FAV G+ S +
Sbjct: 17 CGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTI 76
Query: 99 VCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGL 151
C L RLRGK+D N+ +G TG L+ P A++ S + G +++G+
Sbjct: 77 DCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGILLALIEGV 129
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 71 KKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
++G + + S AK F ++ ++S CC++ LR K+D+ N+ ++GC TG
Sbjct: 97 RRGFKDMGSRSWSSAKNFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Homo sapiens GN=TIMM17B PE=1 SV=1
Length = 172
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 87 TFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSF 146
+FAV G+ S + C L RLRGK+D N+ +G TG L+ P A++ S + G
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLA 124
Query: 147 IMDGL 151
+++G+
Sbjct: 125 LIEGV 129
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Mus musculus GN=Timm17b PE=2 SV=1
Length = 172
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 87 TFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSF 146
+FAV G+ S + C L RLRGK+D N+ +G TG L+ P A++ S + G
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLA 124
Query: 147 IMDGL 151
+++G+
Sbjct: 125 LIEGV 129
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALL 135
S AK F + +++ V C ++ LR K+D+ N AG TG L++ P A L
Sbjct: 124 SSAKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLAYKAGPQAAL 176
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Homo sapiens GN=TIMM17A PE=1 SV=1
Length = 171
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 51 DAFAGAF-MGSIFGYGAGLFKK-KG-----------LRGSFGEAGSHAK----TFAVLSG 93
D GAF MG+I G G+F+ KG LRGS + A +FAV G
Sbjct: 15 DDCGGAFTMGTI---GGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGG 71
Query: 94 VHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDG 150
+ S++ C + ++RGK+D N+ +G TG L+ P A++ S G +++G
Sbjct: 72 LFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEG 128
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Mus musculus GN=Timm17a PE=2 SV=1
Length = 171
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 51 DAFAGAF-MGSIFGYGAGLFKK-KG-----------LRGSFGEAGSHAK----TFAVLSG 93
D GAF MG+I G G+F+ KG LRGS + A +FAV G
Sbjct: 15 DDCGGAFTMGTI---GGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGG 71
Query: 94 VHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDG 150
+ S + C + ++RGK+D N+ +G TG L+ P A++ S G +++G
Sbjct: 72 LFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEG 128
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Rattus norvegicus GN=Timm17a PE=2 SV=1
Length = 171
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 51 DAFAGAF-MGSIFGYGAGLFKK-KG-----------LRGSFGEAGSHAK----TFAVLSG 93
D GAF MG+I G G+F+ KG LRGS + A +FAV G
Sbjct: 15 DDCGGAFTMGTI---GGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGG 71
Query: 94 VHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDG 150
+ S + C + ++RGK+D N+ +G TG L+ P A++ S G +++G
Sbjct: 72 LFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEG 128
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1
Length = 181
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 50 GDAFA-GAFMGSIF----GYGAGLFKKKGLRGSFGEAGSHAK----TFAVLSGVHSLVVC 100
G AFA G GSIF GY K K L G E + FA G+ S + C
Sbjct: 18 GSAFAMGLVGGSIFQAFGGY-KNAAKGKKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDC 76
Query: 101 CLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIM 148
CL +R K+D IN+ V+G TG L+ P + S I LG+ M
Sbjct: 77 CLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAI-LGSVILAM 123
>sp|Q9LYG1|TI173_ARATH Mitochondrial import inner membrane translocase subunit TIM17-3
OS=Arabidopsis thaliana GN=TIM17-3 PE=2 SV=1
Length = 133
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 87 TFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSF 146
TFAV G+ S L R+R K+D N+ VAG TG LS A TS + G F
Sbjct: 65 TFAVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGVVAASTSAVMFGFFLA 124
Query: 147 IMD 149
+++
Sbjct: 125 VLN 127
>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2
OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
Length = 243
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 87 TFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSF 146
+FAV G+ S C + LR K+D N+ +AG TG LS A S I G
Sbjct: 65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLA 124
Query: 147 IMDG----LNK 153
+++G LNK
Sbjct: 125 LIEGAGIMLNK 135
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 88 FAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFI 147
F V G+ S C +K +R K+D NA +AG TG AL+ G A I +
Sbjct: 66 FGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAV 125
Query: 148 MDGL 151
+GL
Sbjct: 126 FEGL 129
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2
Length = 179
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 88 FAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFI 147
FAV S + C L R K+D NA ++G TG L+ +++L+S + GA +
Sbjct: 66 FAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLAL 125
Query: 148 MDGLN 152
++G+
Sbjct: 126 IEGVG 130
>sp|Q6DJ08|S2538_XENTR Solute carrier family 25 member 38 OS=Xenopus tropicalis
GN=slc25a38 PE=2 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 25 PNPNSSKAIVAVPSASAAVCLMQFT---GDAFAGAF-MGSIFGYGAGLFKKKGLRGSFGE 80
P P S + A AAVC++ FT +G + S++G ++K +G RG F
Sbjct: 119 PKPLESVMLGAGSRTVAAVCMLPFTVVKTRYESGKYGYKSVYGALKNIYKTEGPRGLFSG 178
Query: 81 AGSHAKTFAVLSGVHSLVVCCLKRLRGKDD-------VINAGVAGCCTGIALSFPGEPSA 133
+ A SG++ + K+L +D V+N G G GI S +P+
Sbjct: 179 LTATLMRDAPFSGIYLMFYTRAKKLVPQDQIDPLFSPVLNFG-CGIVAGILASVATQPAD 237
Query: 134 LLTSCISL 141
++ + I L
Sbjct: 238 VIKTHIQL 245
>sp|Q9LN27|TI171_ARATH Mitochondrial import inner membrane translocase subunit TIM17-1
OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1
Length = 218
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 34 VAVPSASAAVC---LMQFTGDAFA-GAFMGSIFGYGAGLFKKKG----------LRGSFG 79
+ P +S C ++ G AFA GA GS + G++ G LR S
Sbjct: 1 MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60
Query: 80 EAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCI 139
+G +F+V G++S C L R K+D N+ ++G TG LS A S +
Sbjct: 61 RSGG---SFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSAL 117
Query: 140 SLGAFSFIMDG----LNKQQ 155
G +++G LNK Q
Sbjct: 118 VGGVLLAMIEGVGIMLNKVQ 137
>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
Length = 159
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 82 GSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTG 122
G+H TFA + GV+ V ++ R K D N + G G
Sbjct: 63 GTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAG 103
>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
thaliana GN=OEP164 PE=2 SV=1
Length = 136
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 90 VLSGVHSLVVCCLKRLRGKDDVINA 114
++SGV ++ C L+R RGK+D +NA
Sbjct: 65 LVSGVFTMTHCGLQRYRGKNDWVNA 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,071,221
Number of Sequences: 539616
Number of extensions: 3328401
Number of successful extensions: 15521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 15356
Number of HSP's gapped (non-prelim): 193
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)