Query 028465
Match_columns 208
No_of_seqs 152 out of 616
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 11:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1652 Mitochondrial import i 100.0 3.9E-32 8.5E-37 228.0 1.8 164 38-201 3-182 (183)
2 KOG3225 Mitochondrial import i 99.9 1.5E-28 3.3E-33 203.2 5.5 115 40-154 38-166 (168)
3 TIGR00980 3a0801so1tim17 mitoc 99.9 4.3E-27 9.3E-32 197.0 11.7 112 39-150 4-126 (170)
4 PTZ00236 mitochondrial import 99.9 6.6E-26 1.4E-30 188.9 11.2 112 38-149 5-127 (164)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.3E-23 2.8E-28 164.5 11.4 111 43-153 1-126 (128)
6 TIGR00983 3a0801s02tim23 mitoc 99.9 2.5E-22 5.5E-27 165.0 11.3 112 35-147 26-148 (149)
7 KOG3324 Mitochondrial import i 99.6 4.2E-15 9.2E-20 127.0 6.3 114 30-144 64-188 (206)
8 COG5596 TIM22 Mitochondrial im 99.5 6.4E-16 1.4E-20 131.0 -1.9 116 39-154 41-189 (191)
9 COG5596 TIM22 Mitochondrial im 98.1 7.4E-07 1.6E-11 76.2 1.0 125 27-154 16-165 (191)
10 KOG4608 Uncharacterized conser 96.1 0.0009 2E-08 59.7 -1.1 53 83-135 133-185 (270)
11 PF10247 Romo1: Reactive mitoc 91.0 0.43 9.3E-06 34.9 4.3 58 43-100 2-67 (67)
12 KOG4096 Uncharacterized conser 91.0 0.39 8.4E-06 35.8 4.0 62 40-101 3-72 (75)
13 KOG1398 Uncharacterized conser 85.2 1.1 2.4E-05 42.9 4.1 45 83-127 301-345 (460)
14 PTZ00236 mitochondrial import 83.5 13 0.00027 31.6 9.3 78 81-158 63-143 (164)
15 TIGR00980 3a0801so1tim17 mitoc 76.9 35 0.00076 29.0 9.9 109 47-156 16-136 (170)
16 PF02466 Tim17: Tim17/Tim22/Ti 74.2 33 0.00071 26.4 8.5 107 41-147 3-124 (128)
17 KOG1398 Uncharacterized conser 65.4 20 0.00043 34.7 6.5 47 80-126 77-123 (460)
18 PF05818 TraT: Enterobacterial 60.1 13 0.00028 32.8 4.0 41 114-154 89-131 (215)
19 PF13488 Gly-zipper_Omp: Glyci 56.9 22 0.00049 23.9 3.9 39 117-155 5-45 (46)
20 PF08560 DUF1757: Protein of u 52.8 1.4E+02 0.003 25.0 9.7 30 33-62 16-45 (155)
21 PF13436 Gly-zipper_OmpA: Glyc 50.0 26 0.00057 27.6 3.9 45 109-153 50-96 (118)
22 PRK10510 putative outer membra 47.8 19 0.00042 31.2 3.1 85 114-198 38-140 (219)
23 PF12732 YtxH: YtxH-like prote 44.7 23 0.00051 25.3 2.7 20 50-69 3-22 (74)
24 COG2979 Uncharacterized protei 41.2 32 0.00069 30.6 3.4 55 107-161 30-90 (225)
25 PF10439 Bacteriocin_IIc: Bact 38.5 94 0.002 21.9 4.9 40 99-138 10-53 (65)
26 PF09877 DUF2104: Predicted me 37.1 1.5E+02 0.0033 23.3 6.3 72 51-130 7-78 (99)
27 COG5336 Uncharacterized protei 35.9 1.6E+02 0.0035 23.7 6.4 24 44-67 44-67 (116)
28 PF04418 DUF543: Domain of unk 35.6 36 0.00079 25.2 2.5 28 39-66 20-47 (75)
29 KOG0764 Mitochondrial FAD carr 29.5 1.1E+02 0.0024 28.4 5.0 44 83-126 75-120 (299)
30 PRK13731 conjugal transfer sur 28.3 66 0.0014 29.0 3.4 48 106-153 107-160 (243)
31 PF00153 Mito_carr: Mitochondr 26.8 1.4E+02 0.0029 21.0 4.3 25 85-109 71-95 (95)
32 PF06166 DUF979: Protein of un 26.5 5.4E+02 0.012 24.1 9.0 126 51-198 122-262 (308)
33 KOG1519 Predicted mitochondria 25.9 1.4E+02 0.0029 26.9 4.8 22 45-66 208-229 (297)
34 PF12597 DUF3767: Protein of u 24.2 1.2E+02 0.0027 24.1 3.9 30 39-71 34-63 (118)
35 KOG4505 Na+/H+ antiporter [Ino 23.0 2.9E+02 0.0063 26.8 6.7 80 41-128 201-280 (467)
36 TIGR03720 exospor_lead exospor 22.7 41 0.00088 20.4 0.7 11 171-182 11-21 (26)
37 PF06916 DUF1279: Protein of u 22.2 1.1E+02 0.0024 22.8 3.2 40 72-112 1-46 (91)
38 COG2035 Predicted membrane pro 21.8 5E+02 0.011 23.9 7.7 79 88-166 119-229 (276)
39 TIGR03789 pdsO proteobacterial 20.1 78 0.0017 28.2 2.2 34 115-148 43-77 (239)
No 1
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-32 Score=228.02 Aligned_cols=164 Identities=33% Similarity=0.390 Sum_probs=145.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHhh
Q 028465 38 SASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-----------KKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLR 106 (208)
Q Consensus 38 ~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------~k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~lR 106 (208)
...+|+|++|++.|+...+.||++-|.++..+ .+.++..+..+++.++++||+||++||.+||++..+|
T Consensus 3 e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R 82 (183)
T KOG1652|consen 3 EYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIR 82 (183)
T ss_pred cccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHHHh
Confidence 36799999999999999999999999877643 1224566677889999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc-----CCCCccccccCCC
Q 028465 107 GKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQPALAHSLSRQSRS-----GQFLVPRSLALPL 181 (208)
Q Consensus 107 gKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~q~a~a~~~~~~~~~-----~~~~~~~~~~~~~ 181 (208)
+|||.||++++||+||++|+.|+|+++++.+|+.|+++.+++|.+.+++.++++....+... .....++..++|+
T Consensus 83 ~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T KOG1652|consen 83 KKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQPPLPQARSDAPLLSAQLPI 162 (183)
T ss_pred cccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCCCCccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999988776522 3334456889999
Q ss_pred chhHHHHHHHHHhhhccccc
Q 028465 182 PDELKDAFSSFCKSLRKPIK 201 (208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ 201 (208)
++|.+-+++.||+++.|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~ 182 (183)
T KOG1652|consen 163 GDENSGAGFGFCGSLQKPVK 182 (183)
T ss_pred cccccccCcccchhhhhccC
Confidence 99999999999999999886
No 2
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-28 Score=203.16 Aligned_cols=115 Identities=29% Similarity=0.447 Sum_probs=103.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhhhhh--------------ccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHh
Q 028465 40 SAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK--------------KKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRL 105 (208)
Q Consensus 40 a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~--------------k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~l 105 (208)
-.++|++|++.++|.|+++|+++|+|.+.+- +|-++.+.+++++++++||++|++|+++||++|++
T Consensus 38 ~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~ 117 (168)
T KOG3225|consen 38 EENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESF 117 (168)
T ss_pred HhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHH
Confidence 4569999999999999999999999998752 11234455566799999999999999999999999
Q ss_pred hcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 028465 106 RGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQ 154 (208)
Q Consensus 106 RgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~ 154 (208)
|.|+||+|++++||+||+.++.|+||++.++||++|++||++||++++.
T Consensus 118 RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y~~~ 166 (168)
T KOG3225|consen 118 RAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKYMRG 166 (168)
T ss_pred HhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999998764
No 3
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.94 E-value=4.3e-27 Score=197.00 Aligned_cols=112 Identities=29% Similarity=0.370 Sum_probs=101.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-------hccchhhHHH----HhhhhHHHHHHHHhHhhhHHHHHHHhhc
Q 028465 39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-------KKKGLRGSFG----EAGSHAKTFAVLSGVHSLVVCCLKRLRG 107 (208)
Q Consensus 39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-------~k~g~k~~~~----~~g~~a~~FAvvGgvYSg~eC~le~lRg 107 (208)
..+|+|++|++++++.|+.+|.++|.+++++ ..+++++.++ +..+.+++||+||++|+++||+++++|+
T Consensus 4 ~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 4 YTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred cccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999888887764 1234445444 5569999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHH
Q 028465 108 KDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDG 150 (208)
Q Consensus 108 KdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~ 150 (208)
|||+||+++|||+||++|+.++|+++++.+|+.+++|.++||+
T Consensus 84 KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~ 126 (170)
T TIGR00980 84 KEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEG 126 (170)
T ss_pred ccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997
No 4
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.93 E-value=6.6e-26 Score=188.90 Aligned_cols=112 Identities=29% Similarity=0.334 Sum_probs=94.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-------hccchhhHHH----HhhhhHHHHHHHHhHhhhHHHHHHHhh
Q 028465 38 SASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-------KKKGLRGSFG----EAGSHAKTFAVLSGVHSLVVCCLKRLR 106 (208)
Q Consensus 38 ~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-------~k~g~k~~~~----~~g~~a~~FAvvGgvYSg~eC~le~lR 106 (208)
...+|||++|++++++.++.+|.+.|.+.+++ .++.+++.++ +...++++||+||++|+++||+++++|
T Consensus 5 ~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R 84 (164)
T PTZ00236 5 DLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR 84 (164)
T ss_pred hhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999988888776653 3445555444 556999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 028465 107 GKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMD 149 (208)
Q Consensus 107 gKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid 149 (208)
+|||+||+++|||+||++|++++||++++.+++.++++.++||
T Consensus 85 ~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie 127 (164)
T PTZ00236 85 GKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIE 127 (164)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977766666555555555
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.90 E-value=1.3e-23 Score=164.50 Aligned_cols=111 Identities=27% Similarity=0.466 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhhHHHHhhh----hHHHHHHHHhHhhhHHHHHHHhhc
Q 028465 43 VCLMQFTGDAFAGAFMGSIFGYGAGLF-----------KKKGLRGSFGEAGS----HAKTFAVLSGVHSLVVCCLKRLRG 107 (208)
Q Consensus 43 ~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------~k~g~k~~~~~~g~----~a~~FAvvGgvYSg~eC~le~lRg 107 (208)
||+.|++.+++.|+++|.++|.+.+.. .+++++.+++.+++ .+..||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999999999999999988754 12245667777776 999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 028465 108 KDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNK 153 (208)
Q Consensus 108 KdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~ 153 (208)
|||+||+++||++||++++.+.|++.++.+++++++++.++|++++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGR 126 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999875
No 6
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.88 E-value=2.5e-22 Score=164.99 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=96.5
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHHHhh----hhHHHHHHHHhHhhhHHHHHH
Q 028465 35 AVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFGEAG----SHAKTFAVLSGVHSLVVCCLK 103 (208)
Q Consensus 35 ~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~~~g----~~a~~FAvvGgvYSg~eC~le 103 (208)
|.|.|..+.| +++..++++|.++|+++|++.++.. |++++.+++.++ +.+++||+|+++|+++||.++
T Consensus 26 ~~R~~~e~~~-~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~ 104 (149)
T TIGR00983 26 PSRGWFEDLC-FGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIE 104 (149)
T ss_pred CCCChhhhhh-hhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888665555 7788899999999999999998762 334555565554 788999999999999999999
Q ss_pred HhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 028465 104 RLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFI 147 (208)
Q Consensus 104 ~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~a 147 (208)
++|+|||+||+++||++||++|+.++|+++++.+|++.+++..+
T Consensus 105 ~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 105 ATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV 148 (149)
T ss_pred HHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence 99999999999999999999999999999999999987776653
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.2e-15 Score=127.03 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=91.9
Q ss_pred CCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHHHh----hhhHHHHHHHHhHhhhH
Q 028465 30 SKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFGEA----GSHAKTFAVLSGVHSLV 98 (208)
Q Consensus 30 ~~~~~~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~~~----g~~a~~FAvvGgvYSg~ 98 (208)
+.+.++++.|-.+-| +.+...++.|+++|+..|+..++.. |.+...++... -..+...++++.+|+++
T Consensus 64 ~eg~~~~rgw~E~l~-f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~Ysai 142 (206)
T KOG3324|consen 64 EEGAIKRRGWFENLT-FGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAI 142 (206)
T ss_pred hhccccccchhhhhh-eeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHH
Confidence 366788888665555 5566689999999999999998751 22333344433 36678889999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHH
Q 028465 99 VCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAF 144 (208)
Q Consensus 99 eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAf 144 (208)
|..++..|+|||+||+++||++||+++....|++++..+++..+..
T Consensus 143 esgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~a 188 (206)
T KOG3324|consen 143 ESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTA 188 (206)
T ss_pred HHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887664333
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.4e-16 Score=131.00 Aligned_cols=116 Identities=25% Similarity=0.256 Sum_probs=99.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhhhh-----------------------------hccchhhHHHHhh----hhH
Q 028465 39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLF-----------------------------KKKGLRGSFGEAG----SHA 85 (208)
Q Consensus 39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~-----------------------------~k~g~k~~~~~~g----~~a 85 (208)
...++|+.+.+.+++.|+.+|...|.|+..+ .+.+.+..+++++ .++
T Consensus 41 ~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG 120 (191)
T COG5596 41 AFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTG 120 (191)
T ss_pred chhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccc
Confidence 4557899999999999999999999887532 1122333344443 889
Q ss_pred HHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 028465 86 KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQ 154 (208)
Q Consensus 86 ~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~ 154 (208)
++||++|.+|.+.+|.++.+|+|||+.|++.+|+.||+.+..+.|+|++.++.+.|++|+..++..+|.
T Consensus 121 ~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 121 KNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred cccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999987664
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.4e-07 Score=76.16 Aligned_cols=125 Identities=23% Similarity=0.272 Sum_probs=91.9
Q ss_pred CCCCCcccccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhh-------ccchhhHHH----HhhhhHHHHH-HHHhH
Q 028465 27 PNSSKAIVAVPSASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFK-------KKGLRGSFG----EAGSHAKTFA-VLSGV 94 (208)
Q Consensus 27 ~~~~~~~~~~~~~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~-------k~g~k~~~~----~~g~~a~~FA-vvGgv 94 (208)
+|.++-|-+ ..+++|+.-.+.+...++-++.+.+..+..++ -.++...+. ...-.+++|| +||++
T Consensus 16 ~~~~~~lS~---~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl 92 (191)
T COG5596 16 PNAYNILSP---EERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL 92 (191)
T ss_pred CCcccccCh---hhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence 444444444 48899999999999999988888888765432 112222332 3347788998 99999
Q ss_pred hhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCC----chHHHH---------HHHHHHHHHHHHHHHhhh
Q 028465 95 HSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGE----PSALLT---------SCISLGAFSFIMDGLNKQ 154 (208)
Q Consensus 95 YSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G----~~a~v~---------G~a~fAAfs~aid~l~~~ 154 (208)
++.++|..+++|.|+|.||....|+.||..++..+. ....+- ..+++++|.++.-...+.
T Consensus 93 ~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g 165 (191)
T COG5596 93 FSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG 165 (191)
T ss_pred eeccccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc
Confidence 999999999999999999999999999999888754 333333 345577777776554333
No 10
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0009 Score=59.69 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=44.9
Q ss_pred hhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHH
Q 028465 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALL 135 (208)
Q Consensus 83 ~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v 135 (208)
..|-..|++.+.|-++...+..+|+|+|.||=+++|.+||+++.+.-|+..++
T Consensus 133 ~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~a 185 (270)
T KOG4608|consen 133 RWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLA 185 (270)
T ss_pred cceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHh
Confidence 33445588888999999999999999999999999999999999887765544
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=91.03 E-value=0.43 Score=34.89 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhh----hccchhhHHHHh----hhhHHHHHHHHhHhhhHHH
Q 028465 43 VCLMQFTGDAFAGAFMGSIFGYGAGLF----KKKGLRGSFGEA----GSHAKTFAVLSGVHSLVVC 100 (208)
Q Consensus 43 ~C~~r~~~~~v~G~~mG~~~Glf~g~~----~k~g~k~~~~~~----g~~a~~FAvvGgvYSg~eC 100 (208)
+|+-|+-+....|..+|..+|.+.+.+ .+.+-++.++.. -.++..|+.+=++=+.++|
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 799999999999999999888887754 122223334433 3667777776555555444
No 12
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.39 Score=35.78 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhhhh----hccchhhHHHHh----hhhHHHHHHHHhHhhhHHHH
Q 028465 40 SAAVCLMQFTGDAFAGAFMGSIFGYGAGLF----KKKGLRGSFGEA----GSHAKTFAVLSGVHSLVVCC 101 (208)
Q Consensus 40 a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~----~k~g~k~~~~~~----g~~a~~FAvvGgvYSg~eC~ 101 (208)
...+|+.|+-+..+.|..+|...|.+.+-+ ...+-++.++.. -.++.+|+.+=++=++++|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 456899999998888888877777766533 222333344444 47788898888888888775
No 13
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=1.1 Score=42.92 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccC
Q 028465 83 SHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSF 127 (208)
Q Consensus 83 ~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~ 127 (208)
+.+.-.+.+-++|.++.|+++++|-+||..|+++||.+++..+..
T Consensus 301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 566777889999999999999999999999999999999876654
No 14
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=83.49 E-value=13 Score=31.57 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCCchHHHHHHHH---HHHHHHHHHHHhhhhhh
Q 028465 81 AGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGEPSALLTSCIS---LGAFSFIMDGLNKQQPA 157 (208)
Q Consensus 81 ~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~---fAAfs~aid~l~~~q~a 157 (208)
.+..+..-++..++.+.++..-++-=-.+-.+-..+.|.+-++--+.++-..+++.|++. +..++.+++++...++.
T Consensus 63 g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~ 142 (164)
T PTZ00236 63 GGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPR 142 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455556777777888877777767788888899999888888888777888888877 55666667666554444
Q ss_pred h
Q 028465 158 L 158 (208)
Q Consensus 158 ~ 158 (208)
+
T Consensus 143 ~ 143 (164)
T PTZ00236 143 Q 143 (164)
T ss_pred H
Confidence 3
No 15
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=76.93 E-value=35 Score=29.03 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-------h-----hhhhccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHH
Q 028465 47 QFTGDAFAGAFMGSIFGYG-------A-----GLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINA 114 (208)
Q Consensus 47 r~~~~~v~G~~mG~~~Glf-------~-----g~~~k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns 114 (208)
-+......|.+.|++++++ . +.++... ...-.-.+..+..-++..++.+.++..-++-=-.+-.+-.
T Consensus 16 ~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~-~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG 94 (170)
T TIGR00980 16 DFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIK-TRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISG 94 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3445566666677776665 1 2221111 1123334566666778888888888877777678889999
Q ss_pred HHHHHHhhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhh
Q 028465 115 GVAGCCTGIALSFPGEPSALLTSCISLGAFSFIMDGLNKQQP 156 (208)
Q Consensus 115 ~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~l~~~q~ 156 (208)
.+.|.+-++-=+.+.-....+.+++.+++|-++--.+.|..+
T Consensus 95 ~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 95 FLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999888888888999999999999998888888743
No 16
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=74.21 E-value=33 Score=26.39 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=66.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhh-----------hhhhccchhhH----HHHhhhhHHHHHHHHhHhhhHHHHHHHh
Q 028465 41 AAVCLMQFTGDAFAGAFMGSIFGYGA-----------GLFKKKGLRGS----FGEAGSHAKTFAVLSGVHSLVVCCLKRL 105 (208)
Q Consensus 41 ~e~C~~r~~~~~v~G~~mG~~~Glf~-----------g~~~k~g~k~~----~~~~g~~a~~FAvvGgvYSg~eC~le~l 105 (208)
.|.|...++...+.|++.|+..+... ....++.++.+ .+.+...+.--++..++-..+|-.-++-
T Consensus 3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~ 82 (128)
T PF02466_consen 3 PERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKD 82 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56788889999999999999999761 11112222222 2245555555566666666666665554
Q ss_pred hcccchhHHHHHHHHhhhhccCCCCchHHHHHHHHHHHHHHH
Q 028465 106 RGKDDVINAGVAGCCTGIALSFPGEPSALLTSCISLGAFSFI 147 (208)
Q Consensus 106 RgKdD~~Ns~iAG~~TGAiLg~r~G~~a~v~G~a~fAAfs~a 147 (208)
-..+-.+=..++|++-|.--+.+.-....+.+++..+++...
T Consensus 83 D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~ 124 (128)
T PF02466_consen 83 DPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYY 124 (128)
T ss_pred ccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666666666666655555555443
No 17
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.43 E-value=20 Score=34.70 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=38.9
Q ss_pred HhhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhcc
Q 028465 80 EAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALS 126 (208)
Q Consensus 80 ~~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg 126 (208)
++-.++.-+.--.+.|-...|.+++++||.-.||++++|++.+.-.+
T Consensus 77 ~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 77 EACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhh
Confidence 44466677777778899999999999999999999999999874433
No 18
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=60.14 E-value=13 Score=32.84 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHhhhhccC-CCCchHHHHH-HHHHHHHHHHHHHHhhh
Q 028465 114 AGVAGCCTGIALSF-PGEPSALLTS-CISLGAFSFIMDGLNKQ 154 (208)
Q Consensus 114 s~iAG~~TGAiLg~-r~G~~a~v~G-~a~fAAfs~aid~l~~~ 154 (208)
++++|.++|+.++. .++....++| +++.|+..++.|.+.+-
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~v~D 131 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAMVED 131 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhhccc
Confidence 34555556655553 3455556666 66678888888866554
No 19
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=56.94 E-value=22 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHhhhhccCCCC--chHHHHHHHHHHHHHHHHHHHhhhh
Q 028465 117 AGCCTGIALSFPGE--PSALLTSCISLGAFSFIMDGLNKQQ 155 (208)
Q Consensus 117 AG~~TGAiLg~r~G--~~a~v~G~a~fAAfs~aid~l~~~q 155 (208)
-|++.|++++...+ ....+.+++..++.-..+.+.+++|
T Consensus 5 iGA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~~d~q 45 (46)
T PF13488_consen 5 IGAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNYMDKQ 45 (46)
T ss_pred HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666554333 3667778888888888888877776
No 20
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=52.76 E-value=1.4e+02 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=15.9
Q ss_pred ccccCCCCCcchHHHHHHHHHHHHHHHHHH
Q 028465 33 IVAVPSASAAVCLMQFTGDAFAGAFMGSIF 62 (208)
Q Consensus 33 ~~~~~~~a~e~C~~r~~~~~v~G~~mG~~~ 62 (208)
|...|..-.|.|..-+..+.-.|.++|.+.
T Consensus 16 l~~iP~P~~el~iHvt~k~~q~gs~lGsl~ 45 (155)
T PF08560_consen 16 LQDIPNPKTELTIHVTFKGAQAGSFLGSLI 45 (155)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334334445555555555555556666555
No 21
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=50.04 E-value=26 Score=27.64 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHhhhhccCCCC--chHHHHHHHHHHHHHHHHHHHhh
Q 028465 109 DDVINAGVAGCCTGIALSFPGE--PSALLTSCISLGAFSFIMDGLNK 153 (208)
Q Consensus 109 dD~~Ns~iAG~~TGAiLg~r~G--~~a~v~G~a~fAAfs~aid~l~~ 153 (208)
++.....+.|++.|++++.-.| ...+++|+++.++.-++......
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHhhhhhh
Confidence 4455556667777777776433 35666776665555555554433
No 22
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=47.77 E-value=19 Score=31.20 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhccCCCC-----chHHHHHHHHHHHHHHHHHHHhh-hhhhhhccccccc----ccCCC-Cc--c--cccc
Q 028465 114 AGVAGCCTGIALSFPGE-----PSALLTSCISLGAFSFIMDGLNK-QQPALAHSLSRQS----RSGQF-LV--P--RSLA 178 (208)
Q Consensus 114 s~iAG~~TGAiLg~r~G-----~~a~v~G~a~fAAfs~aid~l~~-~q~a~a~~~~~~~----~~~~~-~~--~--~~~~ 178 (208)
....|.++|++++.-.| .+.+++|+++.+++.+.+-+.+. |+..+...+.... ..+.. .+ | .-|.
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g~~~d~q~~~l~~~l~~~gv~v~~~g~~~~l~~~~~i~F~ 117 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFD 117 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhhhhhhhHHHHHHHHhhcCCcEEEEcCCeEEEEcCCCceeC
Confidence 34455566666654322 24566676666666656655444 4444544332211 11111 11 1 1111
Q ss_pred C---CCchhHHHHHHHHHhhhcc
Q 028465 179 L---PLPDELKDAFSSFCKSLRK 198 (208)
Q Consensus 179 ~---~~~~~~~~~~~~~~~~~~~ 198 (208)
. -+..+.++.+..+.+.|++
T Consensus 118 ~~sa~L~~~~~~~L~~ia~~L~~ 140 (219)
T PRK10510 118 SSSATLKPAGANTLTGVAMVLKE 140 (219)
T ss_pred CCCcccCHHHHHHHHHHHHHHHh
Confidence 1 0335666777777777764
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=44.75 E-value=23 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 028465 50 GDAFAGAFMGSIFGYGAGLF 69 (208)
Q Consensus 50 ~~~v~G~~mG~~~Glf~g~~ 69 (208)
...+.|+++|++.|++.+--
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~ 22 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK 22 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 45677777777777776643
No 24
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=32 Score=30.63 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=33.7
Q ss_pred cccchhHHHHHHHHhhhhccCCCCch----HHHHHH-HHHHHHHHHHH-HHhhhhhhhhcc
Q 028465 107 GKDDVINAGVAGCCTGIALSFPGEPS----ALLTSC-ISLGAFSFIMD-GLNKQQPALAHS 161 (208)
Q Consensus 107 gKdD~~Ns~iAG~~TGAiLg~r~G~~----a~v~G~-a~fAAfs~aid-~l~~~q~a~a~~ 161 (208)
+..+..|++.+|++++.+|+-+++.+ ..-.|+ +++|++.+-.. -+.+.|+-.+|+
T Consensus 30 ~~~~~l~p~~~GALaa~Llg~K~~rk~~~k~~k~GglAAlG~laY~aY~N~q~~q~~~~~~ 90 (225)
T COG2979 30 GLGSLLNPLGGGALAAMLLGNKSARKLGGKATKLGGLAALGALAYKAYQNYQKGQIPAAHQ 90 (225)
T ss_pred ccccccCcchhHHHHHHHHcCcchHHHHhhHhhhhhHHHHHHHHHHHHHHHhccCcccccC
Confidence 35778999999999999999998543 222333 33444444333 244555444443
No 25
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=38.52 E-value=94 Score=21.92 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHhhcc---cchhHHHHHHHHhhhhccCCCCch-HHHHHH
Q 028465 99 VCCLKRLRGK---DDVINAGVAGCCTGIALSFPGEPS-ALLTSC 138 (208)
Q Consensus 99 eC~le~lRgK---dD~~Ns~iAG~~TGAiLg~r~G~~-a~v~G~ 138 (208)
+.-|+++-+= .+.|..+++++++|++.+...|+. ..+.++
T Consensus 10 ~eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga 53 (65)
T PF10439_consen 10 EEELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGPPVGAVAGA 53 (65)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 3344444443 456777888999999999888774 333333
No 26
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=37.14 E-value=1.5e+02 Score=23.29 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHHhhhhccCCCC
Q 028465 51 DAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCCTGIALSFPGE 130 (208)
Q Consensus 51 ~~v~G~~mG~~~Glf~g~~~k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~TGAiLg~r~G 130 (208)
-++..+.+|..+|+... ++|.+--=+-|+.-..+.-.+++|+++-.+++- .-..|=.++-++.|-.++.|.|
T Consensus 7 i~~i~fiiGs~~GL~yS-YkKy~~P~v~k~iD~~ALv~aiiG~~~~~vn~~-------~~~~~~~ig~~li~~~~GmRPG 78 (99)
T PF09877_consen 7 IYIILFIIGSFLGLEYS-YKKYREPFVEKKIDKLALVLAIIGGLILAVNSP-------SSPILYTIGAFLIGFPLGMRPG 78 (99)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccchhhhcccHHHHHHHHHHHHHHHhcCc-------chhHHHHHHHHHHhhhccCCCC
Confidence 35667777877777543 333322223345557788889999997777765 3445666788888888999876
No 27
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.95 E-value=1.6e+02 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 028465 44 CLMQFTGDAFAGAFMGSIFGYGAG 67 (208)
Q Consensus 44 C~~r~~~~~v~G~~mG~~~Glf~g 67 (208)
-++|...+.++|.++|.++|.+.-
T Consensus 44 ~a~klssefIsGilVGa~iG~llD 67 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLD 67 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999764
No 28
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=35.64 E-value=36 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=23.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhh
Q 028465 39 ASAAVCLMQFTGDAFAGAFMGSIFGYGA 66 (208)
Q Consensus 39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~ 66 (208)
.-.|.|+..++.-++.|+++|.++++++
T Consensus 20 ~kwD~cl~~~l~k~~~G~~~G~~~s~l~ 47 (75)
T PF04418_consen 20 EKWDRCLSDTLVKTGLGFGIGVVFSLLF 47 (75)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5678899888888888999988888854
No 29
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion]
Probab=29.54 E-value=1.1e+02 Score=28.45 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhHhhhHHHHHHHhhccc--chhHHHHHHHHhhhhcc
Q 028465 83 SHAKTFAVLSGVHSLVVCCLKRLRGKD--DVINAGVAGCCTGIALS 126 (208)
Q Consensus 83 ~~a~~FAvvGgvYSg~eC~le~lRgKd--D~~Ns~iAG~~TGAiLg 126 (208)
.++-+|++-=.+|-..+..+..++... ++.+-+.+++.+|++..
T Consensus 75 G~~~sWgiYF~~Y~~~K~~~~~~~~~~~l~~~~~l~sa~~AGa~t~ 120 (299)
T KOG0764|consen 75 GSAPSWGLYFFFYDFLKSFITEGFNSGLLSVLANLSSAAEAGAATT 120 (299)
T ss_pred hchhhHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHhhhHHHH
Confidence 556677777778888888888888766 78888889999888754
No 30
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=28.32 E-value=66 Score=29.01 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=25.2
Q ss_pred hcccchhHHHHHHHHhhhhccC-----CCCchHHHHH-HHHHHHHHHHHHHHhh
Q 028465 106 RGKDDVINAGVAGCCTGIALSF-----PGEPSALLTS-CISLGAFSFIMDGLNK 153 (208)
Q Consensus 106 RgKdD~~Ns~iAG~~TGAiLg~-----r~G~~a~v~G-~a~fAAfs~aid~l~~ 153 (208)
|..+-+.+..+.|+++|+++|. +++.-..++| +++.|++.++.|.+.+
T Consensus 107 ~~a~~~L~~Gy~ga~~Gaa~G~~~~~y~~~~ag~~~G~Glagglig~~ada~ve 160 (243)
T PRK13731 107 RESQGWLNRGYEGAAVGAALGAGITGYNSNSAGATLGVGLAAGLVGMAADAMVE 160 (243)
T ss_pred HHHHHHHhhchhhHHHHHHhhhhhhcccCCcchhhHHHHHHHHHHHHHhhhhhh
Confidence 3334444545555555554433 4444444444 4556777777776544
No 31
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=26.81 E-value=1.4e+02 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=15.7
Q ss_pred HHHHHHHHhHhhhHHHHHHHhhccc
Q 028465 85 AKTFAVLSGVHSLVVCCLKRLRGKD 109 (208)
Q Consensus 85 a~~FAvvGgvYSg~eC~le~lRgKd 109 (208)
.+.+-..+..|...|..-+.++.|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (95)
T PF00153_consen 71 LRSIPYTAIYFGLYEYLKRLLSKKH 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556666777777777777654
No 32
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=26.53 E-value=5.4e+02 Score=24.11 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhhhhh-hccchhhHHH-------HhhhhH---HHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHH
Q 028465 51 DAFAGAFMGSIFGYGAGLF-KKKGLRGSFG-------EAGSHA---KTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGC 119 (208)
Q Consensus 51 ~~v~G~~mG~~~Glf~g~~-~k~g~k~~~~-------~~g~~a---~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~ 119 (208)
.+..|..+|++.+++.++. +|...+..++ +.|..+ --.|.+|.+|... |-.|.+-..+++.
T Consensus 122 ~tlv~lgig~i~Ali~a~~itk~~~~~~~~e~~Rll~~vG~a~iLPQlLAaLG~vF~~A--------GVG~vIa~lv~~v 193 (308)
T PF06166_consen 122 GTLVGLGIGAIVALIVALIITKPKPKQPLKESRRLLDQVGWAAILPQLLAALGAVFTAA--------GVGDVIASLVSSV 193 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHhh
Confidence 4666777888888877764 4444444333 334222 4568888888754 5566665555554
Q ss_pred HhhhhccCCCCchHHHHHHHHHHHHHHHHHH----HhhhhhhhhcccccccccCCCCccccccCCCchhHHHHHHHHHhh
Q 028465 120 CTGIALSFPGEPSALLTSCISLGAFSFIMDG----LNKQQPALAHSLSRQSRSGQFLVPRSLALPLPDELKDAFSSFCKS 195 (208)
Q Consensus 120 ~TGAiLg~r~G~~a~v~G~a~fAAfs~aid~----l~~~q~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
+ -..+..-.++..|++.+.|..++-- +----+.+..|+-...|.+.|.+- .+..-++-||-+
T Consensus 194 i-----P~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiPfvi~~~GgnPaiv---------gAlgM~aGyCGT 259 (308)
T PF06166_consen 194 I-----PEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIPFVIAQFGGNPAIV---------GALGMTAGYCGT 259 (308)
T ss_pred c-----CCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCceEEEecCCCCHHHH---------HHHHHhhcchhc
Confidence 3 2333345667777777777666541 111112233344444444444332 445556666666
Q ss_pred hcc
Q 028465 196 LRK 198 (208)
Q Consensus 196 ~~~ 198 (208)
|--
T Consensus 260 LmT 262 (308)
T PF06166_consen 260 LMT 262 (308)
T ss_pred ccC
Confidence 543
No 33
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only]
Probab=25.86 E-value=1.4e+02 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.541 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028465 45 LMQFTGDAFAGAFMGSIFGYGA 66 (208)
Q Consensus 45 ~~r~~~~~v~G~~mG~~~Glf~ 66 (208)
.-..+.|.++|+.+|++.|+..
T Consensus 208 ~ahLv~DFiAG~LLGA~l~~~F 229 (297)
T KOG1519|consen 208 SAHLVNDFIAGGLLGAMLGFLF 229 (297)
T ss_pred HHHHHHHHhhhhHHHHHHHHhh
Confidence 3456778999999999999854
No 34
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=24.15 E-value=1.2e+02 Score=24.06 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=19.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 028465 39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKK 71 (208)
Q Consensus 39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~k 71 (208)
...-||+=.++ +.|...|.++|++..++++
T Consensus 34 ~~~iPCfR~sl---L~Gi~~G~~vG~~~fl~~~ 63 (118)
T PF12597_consen 34 VHKIPCFRDSL---LYGIAGGFGVGGLRFLFTS 63 (118)
T ss_pred HhcCCcHHHHH---HHHHHHHHHHHhhhhcccC
Confidence 56678987665 5666667777776665543
No 35
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=22.98 E-value=2.9e+02 Score=26.79 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHHhhhhHHHHHHHHhHhhhHHHHHHHhhcccchhHHHHHHHH
Q 028465 41 AAVCLMQFTGDAFAGAFMGSIFGYGAGLFKKKGLRGSFGEAGSHAKTFAVLSGVHSLVVCCLKRLRGKDDVINAGVAGCC 120 (208)
Q Consensus 41 ~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~k~g~k~~~~~~g~~a~~FAvvGgvYSg~eC~le~lRgKdD~~Ns~iAG~~ 120 (208)
++=-...++..|.-|.++|++.|++. ++++|-.-++---..-+|=+.+.+-..+-.++..+=|-||..=+..|
T Consensus 201 rdwv~~~iLyec~fg~llG~vIG~l~----r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfA--- 273 (467)
T KOG4505|consen 201 RDWVCDNILYECFFGCLLGCVIGYLS----RQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFA--- 273 (467)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHh---
Confidence 33333444555666667777777754 22222211111111245556666666666778888899998766554
Q ss_pred hhhhccCC
Q 028465 121 TGIALSFP 128 (208)
Q Consensus 121 TGAiLg~r 128 (208)
|+++++.
T Consensus 274 -Gi~Fswd 280 (467)
T KOG4505|consen 274 -GIVFSWD 280 (467)
T ss_pred -hhhcchh
Confidence 5566653
No 36
>TIGR03720 exospor_lead exosporium leader peptide. This domain is found as a leader peptide in at least two proteins targeted to the exosporium, a structure that occurs as the outermost layer of Bacillus anthracis, B. cereus, and B. thuringiensis spores. The exosporium consists of a basal layer and a nap of hair-like filaments. BclA, the major protein of the nap filaments, is targeted there by this leader peptide.
Probab=22.67 E-value=41 Score=20.43 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.7
Q ss_pred CCccccccCCCc
Q 028465 171 FLVPRSLALPLP 182 (208)
Q Consensus 171 ~~~~~~~~~~~~ 182 (208)
||+| ||++|..
T Consensus 11 Ppip-pft~P~~ 21 (26)
T TIGR03720 11 PPIP-PFTLPXX 21 (26)
T ss_pred CCCC-Ccccccc
Confidence 4555 8999864
No 37
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=22.24 E-value=1.1e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=26.2
Q ss_pred cchhhHHHHhh------hhHHHHHHHHhHhhhHHHHHHHhhcccchh
Q 028465 72 KGLRGSFGEAG------SHAKTFAVLSGVHSLVVCCLKRLRGKDDVI 112 (208)
Q Consensus 72 ~g~k~~~~~~g------~~a~~FAvvGgvYSg~eC~le~lRgKdD~~ 112 (208)
|++|..+++-| ..+..+.-+|++|..++..++ ++.-.|.+
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvD-v~~~~~~~ 46 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVD-VIALLESL 46 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHh
Confidence 35667777665 445677888888888887666 55544333
No 38
>COG2035 Predicted membrane protein [Function unknown]
Probab=21.77 E-value=5e+02 Score=23.92 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=50.7
Q ss_pred HHHHHhHhhhHHHHHHHhhccc----chhHHHHHHHHhhhhccCCC--Cc---------hH----------------HHH
Q 028465 88 FAVLSGVHSLVVCCLKRLRGKD----DVINAGVAGCCTGIALSFPG--EP---------SA----------------LLT 136 (208)
Q Consensus 88 FAvvGgvYSg~eC~le~lRgKd----D~~Ns~iAG~~TGAiLg~r~--G~---------~a----------------~v~ 136 (208)
|...|.+.++.-...++.+... +..+-+++|+++...+=.++ |. ++ ...
T Consensus 119 ~li~gfii~~~~~~~~~~~~~~~~~~~~i~~~~aGavAa~AMilPGiSGS~lLLllG~Y~~vl~~lss~~~l~~l~~f~~ 198 (276)
T COG2035 119 ALILGFIILGLILYLNNIQTASITTGYLILLFIAGAVAACAMILPGISGSFLLLLLGVYAPVLSALSSFFILGTLLPFAI 198 (276)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344445555555555555555 89999999999987765553 20 11 122
Q ss_pred HHH-HHHHHHHHHHHHhhhhhhhhccccccc
Q 028465 137 SCI-SLGAFSFIMDGLNKQQPALAHSLSRQS 166 (208)
Q Consensus 137 G~a-~fAAfs~aid~l~~~q~a~a~~~~~~~ 166 (208)
|++ ++-.|+=+++|+.|+-....+.+...-
T Consensus 199 G~~~Gll~fskvi~y~L~~h~~~t~~fi~Gl 229 (276)
T COG2035 199 GAGAGLLTFSKVISYLLRNHREITYAFIIGL 229 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333 366788899999998888777766544
No 39
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=20.06 E-value=78 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHhhhhccC-CCCchHHHHHHHHHHHHHHHH
Q 028465 115 GVAGCCTGIALSF-PGEPSALLTSCISLGAFSFIM 148 (208)
Q Consensus 115 ~iAG~~TGAiLg~-r~G~~a~v~G~a~fAAfs~ai 148 (208)
...|+.+|+++|. -+||..++.|+++.+++...+
T Consensus 43 ~~~g~~~ga~~g~~~gg~~G~~~G~~~G~~~g~~~ 77 (239)
T TIGR03789 43 ALIGLGSGALLGALVGGPVGAIIGGITGGLIGQAV 77 (239)
T ss_pred hhhhHHHHHHHhhhhccHHHHHHHHHHHHHhhhhc
Confidence 3336666777664 357776666666666655544
Done!