Query 028465
Match_columns 208
No_of_seqs 152 out of 616
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 37.5 75 0.0026 26.4 6.5 31 94-124 181-215 (303)
2 2lck_A Mitochondrial uncouplin 35.6 57 0.0019 27.1 5.4 16 109-124 102-117 (303)
3 2lbg_A Major prion protein; co 32.3 42 0.0014 19.7 2.8 20 49-68 4-23 (27)
4 1okc_A ADP, ATP carrier protei 19.0 1.6E+02 0.0055 24.1 5.2 13 143-155 225-237 (297)
5 1okc_A ADP, ATP carrier protei 17.7 2.3E+02 0.0078 23.2 5.8 13 112-124 113-125 (297)
6 1loi_A Cyclic 3',5'-AMP specif 13.6 66 0.0023 18.3 0.9 13 189-201 4-16 (26)
7 2imj_A Hypothetical protein DU 12.9 50 0.0017 26.9 0.4 18 98-115 16-33 (166)
8 3ygs_P Procaspase 9; apoptosis 12.0 72 0.0025 22.8 1.0 12 187-198 69-80 (97)
9 3ko5_A D-tyrosyl-tRNA(Tyr) dea 11.3 2.1E+02 0.0072 23.1 3.7 18 181-198 108-125 (164)
10 1j7g_A D-tyrosyl-tRNA(Tyr) dea 10.4 2.7E+02 0.0092 22.0 3.9 18 181-198 98-115 (144)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=37.53 E-value=75 Score=26.39 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=15.3
Q ss_pred HhhhHHHHHHHhhc----ccchhHHHHHHHHhhhh
Q 028465 94 VHSLVVCCLKRLRG----KDDVINAGVAGCCTGIA 124 (208)
Q Consensus 94 vYSg~eC~le~lRg----KdD~~Ns~iAG~~TGAi 124 (208)
.|...|..-+.+.. +++.+..+++|+++|++
T Consensus 181 ~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~ 215 (303)
T 2lck_A 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215 (303)
T ss_dssp HHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 34444444443332 23455666677666643
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=35.61 E-value=57 Score=27.14 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHhhhh
Q 028465 109 DDVINAGVAGCCTGIA 124 (208)
Q Consensus 109 dD~~Ns~iAG~~TGAi 124 (208)
.+.+..+++|+++|++
T Consensus 102 ~~~~~~~~ag~~ag~~ 117 (303)
T 2lck_A 102 AGIGSRLLAGSTTGAL 117 (303)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4567778888888865
No 3
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=32.35 E-value=42 Score=19.67 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 028465 49 TGDAFAGAFMGSIFGYGAGL 68 (208)
Q Consensus 49 ~~~~v~G~~mG~~~Glf~g~ 68 (208)
+....+|.++|++.|++.+.
T Consensus 4 ~ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHH
Confidence 44567888888888887764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=18.99 E-value=1.6e+02 Score=24.11 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhh
Q 028465 143 AFSFIMDGLNKQQ 155 (208)
Q Consensus 143 Afs~aid~l~~~q 155 (208)
++..=+|-+..++
T Consensus 225 ~~t~P~dvvktr~ 237 (297)
T 1okc_A 225 LVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHH
Confidence 3445566655543
No 5
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=17.71 E-value=2.3e+02 Score=23.16 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=8.7
Q ss_pred hHHHHHHHHhhhh
Q 028465 112 INAGVAGCCTGIA 124 (208)
Q Consensus 112 ~Ns~iAG~~TGAi 124 (208)
+..+++|+++|++
T Consensus 113 ~~~~~ag~~ag~~ 125 (297)
T 1okc_A 113 AGNLASGGAAGAT 125 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566777777754
No 6
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=13.61 E-value=66 Score=18.34 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=10.2
Q ss_pred HHHHHhhhccccc
Q 028465 189 FSSFCKSLRKPIK 201 (208)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (208)
..+||..+.||--
T Consensus 4 vdffcetcskpwl 16 (26)
T 1loi_A 4 VDFFCETCSKPWL 16 (26)
T ss_dssp HHHHHHTSSCTTG
T ss_pred HHHHHHhcCCchh
Confidence 3579999999853
No 7
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=12.94 E-value=50 Score=26.92 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.6
Q ss_pred HHHHHHHhhcccchhHHH
Q 028465 98 VVCCLKRLRGKDDVINAG 115 (208)
Q Consensus 98 ~eC~le~lRgKdD~~Ns~ 115 (208)
.|.+++++|--+|.||+=
T Consensus 16 ~EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 478899999999999974
No 8
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=12.00 E-value=72 Score=22.84 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=10.8
Q ss_pred HHHHHHHhhhcc
Q 028465 187 DAFSSFCKSLRK 198 (208)
Q Consensus 187 ~~~~~~~~~~~~ 198 (208)
.||..||+.|++
T Consensus 69 ~Af~~F~~aL~e 80 (97)
T 3ygs_P 69 QALPLFISCLED 80 (97)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 699999999975
No 9
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=11.32 E-value=2.1e+02 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHhhhcc
Q 028465 181 LPDELKDAFSSFCKSLRK 198 (208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (208)
.|+++++.|..|++.|++
T Consensus 108 ~p~~A~~LY~~fv~~lr~ 125 (164)
T 3ko5_A 108 EPNEALIFYNKIIDEFKK 125 (164)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 389999999999998874
No 10
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=10.39 E-value=2.7e+02 Score=22.00 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHhhhcc
Q 028465 181 LPDELKDAFSSFCKSLRK 198 (208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (208)
.|+++++.|..||+.|++
T Consensus 98 ~p~~A~~LY~~f~~~l~~ 115 (144)
T 1j7g_A 98 SPALANELYEYFIQKCAE 115 (144)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 489999999999999975
Done!