Query 028465
Match_columns 208
No_of_seqs 152 out of 616
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 19:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028465.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028465hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrsb2 d.230.4.1 (B:33-84) D- 32.7 8.9 0.00065 24.2 1.5 21 175-195 4-26 (52)
2 d1cy5a_ a.77.1.3 (A:) Apoptoti 17.4 21 0.0015 23.3 1.2 14 186-199 65-78 (93)
3 d1jkea_ c.110.1.1 (A:) D-Tyr t 13.0 86 0.0063 22.9 3.8 22 176-198 94-115 (145)
4 d1j7ga_ c.110.1.1 (A:) D-Tyr t 12.3 1E+02 0.0073 22.5 3.9 18 181-198 98-115 (144)
5 d3ygsp_ a.77.1.3 (P:) Procaspa 12.0 34 0.0025 22.3 1.0 14 186-199 68-81 (97)
6 d2hlja1 d.38.1.1 (A:1-156) Hyp 11.5 85 0.0062 21.6 3.2 26 180-205 123-151 (156)
7 d2imja1 d.17.4.23 (A:5-159) Hy 10.7 31 0.0022 26.0 0.4 17 98-114 12-28 (155)
8 d2hf5a1 a.39.1.5 (A:81-113) Tr 9.6 65 0.0048 17.8 1.5 11 183-193 3-13 (33)
9 d3crda_ a.77.1.3 (A:) Raidd CA 8.2 41 0.003 22.3 0.2 12 187-198 67-78 (100)
10 d1v54j_ f.23.4.1 (J:) Mitochon 8.1 1.4E+02 0.01 18.7 2.9 33 39-71 25-57 (58)
No 1
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=32.66 E-value=8.9 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.331 Sum_probs=15.5
Q ss_pred ccccCCCc--hhHHHHHHHHHhh
Q 028465 175 RSLALPLP--DELKDAFSSFCKS 195 (208)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~~~~~ 195 (208)
++||||.| +++++|=..+++.
T Consensus 4 lSFTLPVp~g~~A~eAAk~la~k 26 (52)
T d1xrsb2 4 LSFTLPLKNNERSAEAAKQIALK 26 (52)
T ss_dssp EEEEESSCSSHHHHHHHHHHHHT
T ss_pred EEEEeeCCCChHHHHHHHHHHHH
Confidence 57888877 7788887777653
No 2
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.36 E-value=21 Score=23.35 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhccc
Q 028465 186 KDAFSSFCKSLRKP 199 (208)
Q Consensus 186 ~~~~~~~~~~~~~~ 199 (208)
.++|..||+.|++-
T Consensus 65 ~~af~~F~~aL~~~ 78 (93)
T d1cy5a_ 65 NDSYVSFYNALLHE 78 (93)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhc
Confidence 46899999999863
No 3
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=13.00 E-value=86 Score=22.92 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.5
Q ss_pred cccCCCchhHHHHHHHHHhhhcc
Q 028465 176 SLALPLPDELKDAFSSFCKSLRK 198 (208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~ 198 (208)
.-+.| |+++++-|..|++.|++
T Consensus 94 ~~Aa~-p~~A~~ly~~f~~~l~~ 115 (145)
T d1jkea_ 94 SKGAS-PDRAEALYDYFVERCRQ 115 (145)
T ss_dssp SSBCC-HHHHHHHHHHHHHHHHH
T ss_pred cccCC-HHHHHHHHHHHHHHHHh
Confidence 33444 89999999999999874
No 4
>d1j7ga_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Haemophilus influenzae [TaxId: 727]}
Probab=12.25 E-value=1e+02 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHhhhcc
Q 028465 181 LPDELKDAFSSFCKSLRK 198 (208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (208)
.|+++++-|..|++.|++
T Consensus 98 ~p~~A~~ly~~fv~~l~~ 115 (144)
T d1j7ga_ 98 SPALANELYEYFIQKCAE 115 (144)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 389999999999999974
No 5
>d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.02 E-value=34 Score=22.26 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhccc
Q 028465 186 KDAFSSFCKSLRKP 199 (208)
Q Consensus 186 ~~~~~~~~~~~~~~ 199 (208)
.++|..||+.|++.
T Consensus 68 ~~af~~F~~aL~~~ 81 (97)
T d3ygsp_ 68 SQALPLFISCLEDT 81 (97)
T ss_dssp TTHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHcc
Confidence 46899999999764
No 6
>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}
Probab=11.50 E-value=85 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.0
Q ss_pred CCchhHHHHHHHHHhh---hcccccCCCC
Q 028465 180 PLPDELKDAFSSFCKS---LRKPIKHGGR 205 (208)
Q Consensus 180 ~~~~~~~~~~~~~~~~---~~~~~~~~~~ 205 (208)
|+|+|+.+.+..+.+. +..|.-.|.+
T Consensus 123 ~~P~~~~~~l~~~~~~~~~~~~p~~~~~~ 151 (156)
T d2hlja1 123 PFGHTTVCRLNHLVEQQEGAQAPQYMGRT 151 (156)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCSSCSCC
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHcCCc
Confidence 6789999999999874 5567766544
No 7
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=10.70 E-value=31 Score=25.99 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHHhhcccchhHH
Q 028465 98 VVCCLKRLRGKDDVINA 114 (208)
Q Consensus 98 ~eC~le~lRgKdD~~Ns 114 (208)
.|.+++++|--+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 37789999999999997
No 8
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=9.62 E-value=65 Score=17.85 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=9.3
Q ss_pred hhHHHHHHHHH
Q 028465 183 DELKDAFSSFC 193 (208)
Q Consensus 183 ~~~~~~~~~~~ 193 (208)
+|+++||.-|=
T Consensus 3 eel~eAF~~FD 13 (33)
T d2hf5a1 3 EEIREAFRVFD 13 (33)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 68999999874
No 9
>d3crda_ a.77.1.3 (A:) Raidd CARD domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=41 Score=22.34 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=10.1
Q ss_pred HHHHHHHhhhcc
Q 028465 187 DAFSSFCKSLRK 198 (208)
Q Consensus 187 ~~~~~~~~~~~~ 198 (208)
++|..||+.|++
T Consensus 67 ~af~~F~~aL~~ 78 (100)
T d3crda_ 67 KAFDTFLDSLQE 78 (100)
T ss_dssp SCHHHHHHHCTT
T ss_pred HHHHHHHHHHhc
Confidence 689999999963
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.12 E-value=1.4e+02 Score=18.67 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 028465 39 ASAAVCLMQFTGDAFAGAFMGSIFGYGAGLFKK 71 (208)
Q Consensus 39 ~a~e~C~~r~~~~~v~G~~mG~~~Glf~g~~~k 71 (208)
-.+|.-++|+.+....++..+.++-++.+.+.|
T Consensus 25 G~~D~~LYr~Tm~L~~~G~~~s~~~l~~a~~Pk 57 (58)
T d1v54j_ 25 GATDNILYRVTMTLCLGGTLYSLYCLGWASFPH 57 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357888899998888887888877777665543
Done!