BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028466
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 311 bits (798), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/204 (72%), Positives = 172/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIRDS+ AV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCAC 208
+D+ L+ GGC+C
Sbjct: 189 IDIKLE----KPQEQPVSEGGCSC 208
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 309 bits (792), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 145/186 (77%), Positives = 168/186 (90%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 62 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 181
Query: 185 VDVNLK 190
+D+ L+
Sbjct: 182 IDIKLE 187
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 309 bits (791), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 148/202 (73%), Positives = 171/202 (84%), Gaps = 4/202 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAG ERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191
Query: 185 VDVNLKXXXXXXXXXXXXXGGC 206
+D+ L+ GGC
Sbjct: 192 IDIKLE----KPQEQPVSEGGC 209
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 140/169 (82%), Positives = 157/169 (92%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+ AV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 297 bits (761), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 139/170 (81%), Positives = 158/170 (92%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
DL DKRQVS EEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGM+
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/162 (84%), Positives = 153/162 (94%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
ERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKTDL D
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
KRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAAL
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 130/163 (79%), Positives = 152/163 (93%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1 GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
QERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKTDL
Sbjct: 61 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+AL
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 248 bits (634), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/162 (72%), Positives = 137/162 (84%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++ VRLQLWDTAGQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
ERFRSLIPSYIRDS+ A++VYD+ +RQSF NTTKW++++ ERG DVII LVGNKTDL D
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
R+V+ EEG KA+E N F ETSAKAG NIK LF+K A+ L
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 114/170 (67%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WD
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQER+ SL P Y R + A++VYD+ ++++F WV+E++ + ++I L GNK
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
DL +KR V EE +A A + +++F+ETSAK N+ LF IA LP E
Sbjct: 124 DLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 173
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 112/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 111/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IV+DV ++ SF KWV+E++ + ++++ L GNK+DL+D R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+V+ E+ + A+E + F+ETSAK N+K +F +IA LP
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 112/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F ETSAK N+ +F IA LP
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 111/165 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
G ER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 110/166 (66%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDT
Sbjct: 2 SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AG ER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK D
Sbjct: 62 AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
L KR V +E +A A + +++F+ETSAK N+ +F IA LP
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 109/164 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
KR V +E +A A + +++F+ETSAK N+ +F IA L
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 107/171 (62%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SA+ + K+ LGD VGK+SI+ RF+ D FD+ TIG F++KT+ + + +WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERF SL P Y R S+ AVIVYD+ + SF KWV+E++ ++++ + GNK
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
DL D R+V +++ + A + + +ETSAK NI+ LF+ I+ +P ++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD-- 128
F SL P Y R++ A++VYDV QSF+ WV+E+ + D+II LVGNK D +
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+R+V+ EEGE A E ++F ETSAK G N+ +F I +P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD+ R SFL+ W+E+VR GS+++ +L+GNK+DL +
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAAL 170
R+VS+ E ++ A +++ IETSAK N++ F ++A L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 107/162 (66%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + ++Y +TIG+DF +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + +IVYDV R SF N +W++E+ +V +LVGNK DLV K
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
R V+ +EG A + FIETSAK +N++ F +A +
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 109/165 (66%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ ++KLV LG+ +VGK+S++ RF+ +F ++TI FL++T+ L+D TV+ ++WDT
Sbjct: 2 SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK D
Sbjct: 62 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
L KR V +E +A A + +++F+ETSAK N+ +F IA L
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 106/158 (67%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYD+ + +SF N W+ + +DV +++GNK D+ DK
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
RQVS E GE A + + F+ETSAKA N++ F +A
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 106/158 (67%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGKT ++ RF D F++T+ +TIGIDF +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYD+ + +SF N W+ + +DV +++GNK D+ DK
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
RQVS E GE A + + F+ETSAKA N++ F +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 111/169 (65%), Gaps = 8/169 (4%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
FRS+ SY R ++ A++VYD+ R++F + T W+E+ R S+++I+L+GNK+DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNI--------KALFRKIAAAL 170
R V EEGEA ARE ++F+ETSAK N+ K ++RKI L
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 101/166 (60%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L + K+ LGD VGK+SI+ RF+ D FD TIG F++KT+ ++ + +WDT
Sbjct: 2 SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERFR+L P Y R S+ A+IVYD+ ++F WV E+R +++ + GNK D
Sbjct: 62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
L D R+V + + A ++ +F+ETSAK NI LF +I+ +P
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 106/154 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +GD VGK+ ++ +F +F + TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
FRS+ SY R ++ A++VYD+ R +F + T W+E+ R S+++I+L+GNK+DL +
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R+V EEGEA ARE ++F+ETSAK N++ F
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 101/167 (60%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SAL + K+ LGD VGK+SI+ RF+ D FD TIG F++KT+ ++ + +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAG ERFR+L P Y R S+ A+IVYD+ ++F WV E+R +++ + GNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
DL D R+V + + A ++ +F+ETSAK NI LF +I+ +P
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 11/204 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R S +IVYDV ++SF W++E+ S V+ +LVGNK DL DK
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETLSST--KQEDL 184
R V + + A + F+ETSA N++ F +A + + L+ T K+ED
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCAC 208
+VNLK GGC C
Sbjct: 189 GNVNLK------GQSLTNTGGCCC 206
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 98/154 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+G FL+K + + + V L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RF +L P Y RDS+ A++VYD+ SF WV+E+R G+++ + +VGNK DL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R VSI+E E+ A + TSAK I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 105/166 (63%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + +KL+ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++L
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
Q+WDTAGQER+R++ +Y R + +++YD+A+++SF W +++T + ++LV
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
GNK DL D+R V E+G A +L F E SAK N+K +F ++
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ +Y R + ++VYDV ++F N +W + V + ++LVGNK+D+ + R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
V+ ++GEA A+EL + FIE+SAK N+ +F +A
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ +Y R + ++VYDV ++F N +W + V + ++LVGNK+D+ + R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
V+ ++GEA A+EL + FIE+SAK N+ +F +A
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+K++ +GD VGKT ++ RF F T+ +T+GIDF +K + ++ V+LQ+WDTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
ERFRS+ +Y RD+ +++YDV ++ SF N W+ E+ DV ++L+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+R V E+GE A+E + F+ETSAK G N+ F IA L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT ++ RF F ATIG+DF+ KT+ + V+LQ+WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFRS+ SY R ++ ++ YD+ +SF +W+ E+ + VI VLVGNK DL ++
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
R+VS + E + ++ ++ETSAK N++ LF +A L +S +Q LV+
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL-----ISEARQNTLVN 198
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 10/203 (4%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R S +IVYDV ++SF W++E+ S V+ +LVGNK DL DK
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETLSST--KQEDL 184
R V + + A + F+ETSA N++ F +A + + L+ T K+ED
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188
Query: 185 VDVNLKXXXXXXXXXXXXXGGCA 207
+VNLK GGC
Sbjct: 189 GNVNLK-----GQSLTNTGGGCC 206
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++S+ N +W++E+ +V +LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP---GMETL 176
+ V + A L + F+ETSAK N++ F +AA + G+E L
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 136 bits (342), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 109/157 (69%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R + +Y R + A++VYD+A ++ N +W++E+R S+++I+LVGNK+DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + N+ FIETSA N++ F+ I
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 104/163 (63%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
A +KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAG
Sbjct: 5 ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
QERFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
K+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 97/154 (62%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+ FL+K + + + V L +WDTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RF +L P Y RDS+ A++VYD+ SF WV+E+R G+++ + +VGNK DL +
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R VSI+E E+ A + TSAK I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 97/154 (62%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V LG+ VGKTS++ R+ +KF++ + T+ FL+K + + + V L +WDTAGQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RF +L P Y RDS+ A++VYD+ SF WV+E+R G+++ + +VGNK DL +
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R VSI+E E+ A + TSAK I+ LF
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQLWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ +Y R + ++VYDV ++F N +W + V + ++LVGNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
V+ ++GEA A+EL + FIE+SAK N+ +F +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 110/157 (70%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I+LVGNK+DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 110/157 (70%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I+LVGNK+DL
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 104/161 (64%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++S+ N +W++E+ +V +LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQ+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ +Y R + ++VYD+ ++F N +W + V + ++LVGNK+D+ + R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
V+ ++GEA A+EL + FIE+SAK N+ +F +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F AA +
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ +GD VGK+ ++ RF+ DKF+ ++ TIGIDF KT+ + + V+LQ+WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ +Y R + ++VYD+ ++F N +W + V + ++LVGNK+D + R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
V+ ++GEA A+EL + FIE+SAK N+ +F +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 102/160 (63%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
FR++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL K+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
V + A L + F+ETSAK N++ F +AA +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 103/157 (65%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A+IVYD++ S+ N W+ E+R +V + L+GNK+DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V EE + A+E ++F ETSA N+ F ++
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I+LVGNK+DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 103/158 (65%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G GK+ ++ +F+ +KF TIG++F S+ + + +TV+LQ+WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFRS+ SY R ++ A++VYD+ SR+++ + W+ + RT +++++L GNK DL +
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
R+V+ E A+E +MF+ETSA G N++ F K A
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I+LVGNK+DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 102/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R + ++VYDV ++SF N +W++E+ +V +LVG K DL K
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+ V + A L + F+ETSAK N++ F +AA +
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD VGK+S++ RF + F +Y TIG+DF +T+ + V+LQ+WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ +Y R + ++VYDV S +SF+N +W+ E+ + DV +LVGNK D ++
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
+ V E+ A ++ + ETSAK N++ +F I
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 108/157 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I LVGNK+DL
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 108/157 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+A ++ N +W++E+R S+++I LVGNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R V +E A A + + FIETSA N++A F+ I
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 106/164 (64%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK+++++RF D+F+ ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A+IVYD++ S+ N W+ E+R +V + L+GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
R V +E + A E ++F ETSA N+ FR++ A+ M
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQM 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 100/158 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ VGK+ ++ RF D + N Y +TIG+DF KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R S +IVYDV ++SF W++E+ S V+ +LVGNK DL DK
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
R V + + A + F+ETSA N++ F +A
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 179
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
+K+V +GD VGK+++++RF D+F+ ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
ER+R++ +Y R + A++VYD+ + SF N KW++E+R S+++I+LVGNK+DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R ++ + A++ + FIETSA N++ F ++
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++LQ+WDTAGQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + +++YD+ + +SF W +++T + ++LVGNK D+ D+
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R VS E G A L F E SAK N+K F ++
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 102/161 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y ++ V+LQ+WDTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + +++YD+ + +SF W +++T + ++LVGNK D+ ++
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
R V E+G+ A +L F E SAK +++ F ++ A+
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
+P A K +++ +G + VGKTS++ RF D F ++T+G+DF KT+ L + +RLQ
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
+WDTAGQERF S+ +Y R + ++VYD+ +++F + KW++ + D ++LVG
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRKI 166
NK D R+++ ++GE A+++ M F E SAK FN+ +F K+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 101/158 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFRS+ SY R ++ A++VYD+ SR+++ T W+ + R +++I+L GNK DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
R+V+ E A+E +MF+ETSA G N++ F + A
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 103/166 (62%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP + +K + +GD VGK+ ++ +F KF TIG++F ++ + + + ++LQ
Sbjct: 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
+WDTAGQERFR++ SY R ++ A++VYD+ R ++ + + W+ + R + +I+L+G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
NK DL +R V+ EE + A E ++F+E SAK G N++ F + A
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 95/157 (60%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ SVGKTS + R+ D F + +T+GIDF KT+Y D+ ++LQ+WDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + ++ YD+ + +SF W +++T + ++LVGNK D D+
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R VS E G A L F E SAK N+K F ++
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
L K++ +G+ VGK+S++ RF D FD ATIG+DF KT+ ++ +L +WDTA
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTD 125
GQERFR+L PSY R + ++VYDV R +F+ W+ E+ T +D++ LVGNK D
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL---PGM 173
+ R+V EG AR+ + +FIE SAK ++ F ++ + PG+
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 101/158 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAGQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFRS+ SY R ++ A++VYD+ SR+++ T W+ + R +++I+L GNK DL
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
R+V+ E A+E +MF+ETSA G +++ F + A
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S+ YK+V GD +VGK+S + R ++F AT+G+DF KT+ ++ LQLWD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRS+ SY R + +++YDV +SFLN +WV+ + V I+LVGNK
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVD------KRQVSIEEGEAKARELNVMFIETSAKAGFNI 159
D+ D ++ V GE A +F ETSAK G NI
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 102/166 (61%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP + +K + +GD VGK+ ++ +F KF TIG++F ++ + + + ++LQ
Sbjct: 23 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121
+WDTAGQ RFR++ SY R ++ A++VYD+ R ++ + + W+ + R + +I+L+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
NK DL +R V+ EE + A E ++F+E SAK G N++ F + A
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 188
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 101/162 (62%), Gaps = 6/162 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R + V+V+DV + +F W +E + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIA 167
+ RQV+ + +A + N+ + ETSAK N++ F+ IA
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 100/158 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K + +G+ GK+ ++ +F+ KF + TIG++F SK + + + V+LQ+WDTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFRS+ SY R ++ A++VYD+ SR+++ T W+ + R +++I+L GNK DL
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
R+V+ E A+E +MF+ETSA G +++ F + A
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 166
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 103/170 (60%), Gaps = 6/170 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R + V+V+DV + +F W +E + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
+ RQV+ + +A + N+ + ETSAK N++ F+ IA ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R + V+V+DV + +F W +E + + V++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
+ RQV+ + +A + N+ + ETSAK N++ F+ IA ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +G+ +VGK+S+I R+ F Y+ TIG+DFL + + + D VRL LWDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
F ++ +Y R + V+V+ R+SF + W E+V E G D+ LV NK DL+D
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167
+ EE E A+ L + F TS K N+ +F+ +A
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGKTS++ +++ KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS----DVIIVLVGNKTDL 126
F+SL ++ R + V+V+DV + +F W +E + + V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGEAKA-RELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
+ RQV+ + +A + N+ + ETSAK N++ F+ IA ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 100/157 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT++++RF ++F + + TIG++F ++T+ L V+ Q+WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++V+D+ Q++ +W++E+ + ++++LVGNK+DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R+V EE A ++F+ETSA N++ F +
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 100/157 (63%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +G+ VGKT++++RF ++F + + TIG++F ++T+ L V+ Q+WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++V+D+ Q++ +W++E+ + ++++LVGNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R+V EE A ++F+ETSA N++ F +
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 2 APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
P+ + K +K++ LGD VGK+S++ R++ +KFD+ TIG++FL+K + ++ V
Sbjct: 1 GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSD 114
+Q+WDTAGQERFRSL + R S ++ + V QSF N + W +E +
Sbjct: 61 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
V++GNKTD + +RQVS EE +A ++ + + ETSAK N+ A F +
Sbjct: 121 FPFVILGNKTD-IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + V L
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
QLWDTAGQERFRSL ++ RD+ ++++D+ S+QSFLN W+ +++ + IVL
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
+GNK DL D+R+V+ + A + + + ETSA G N++
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA S+L +K++ LGD VGK+S++ R++ +KFD TIG++FL+K + ++ V +
Sbjct: 3 MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVI 116
Q+WDTAGQERFRSL + R S ++ + V QSF N + W +E +
Sbjct: 61 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
V++GNK D + +RQVS EE +A R+ + + ETSAK N+ A F +
Sbjct: 121 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA S+L +K++ LGD VGK+S++ R++ +KFD TIG++FL+K + ++ V +
Sbjct: 1 MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVI 116
Q+WDTAGQERFRSL + R S ++ + V QSF N + W +E +
Sbjct: 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
V++GNK D + +RQVS EE +A R+ + + ETSAK N+ A F +
Sbjct: 119 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVL 119
QLWDTAG ERFRSL ++ RD+ ++++D+ S+QSFLN W+ +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
+GNK DL D+R+V+ + A + + + ETSA G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 11/161 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
QLWDTAG ERFRSL ++ RD+ ++++D+ S+QSFLN W+ +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
+GNK DL D+R+V+ + A + + + ETSA G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 11/161 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
QLWDTAG ERFRSL ++ RD+ ++ +D+ S+QSFLN W +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
+GNK DL D+R+V+ + A + + + ETSA G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 11/161 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
KL+ LGD VGKT+ + R+ +KF+ + T+GIDF K + + + V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVL 119
QLWDTAG ERFRSL ++ RD+ ++ +D+ S+QSFLN W +++ + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160
+GNK DL D+R+V+ + A + + + ETSA G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
K + LGD VGKTS++ ++ KF++ + T+GIDF K + + + L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVL 119
QLWDTAG ERFRSL ++ RD+ ++++D+ + QSFLN W+ +++ S + IVL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159
GNK+DL D+R V EE A + + + ETSA G NI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +GD +VGKT + RF +F + +ATIG+DF + + ++ +++QLWDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70 RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
RFR S++ Y R+ V VYD+ + SF + W+EE + +D+ +LVGNK DL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIAAAL 170
QV + + A ++ ETSAK +++A+F +A L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 5/166 (3%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +GD +VGKT + RF +F + +ATIG+DF + + ++ +++QLWDTAGQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70 RFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
RFR S++ Y R+ V VYD + SF + W+EE + +D+ +LVGNK DL
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKALFRKIAAAL 170
QV + + A + ETSAK +++A+F +A L
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 79/115 (68%)
Query: 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
L+ +GD VGK+ ++ RF D + +Y +TIG+DF +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
R++ SY R + ++VYDV ++SF N +W++E+ +V +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
K++ LGD VGKTS++ R++ DK+ Y+ATIG DFL+K + ++ D+ +Q+WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKTD 125
RF+SL ++ R + V+VYDV + SF N W +E V++GNK D
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVD-KRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIA 167
+ K+ VS + + A+ L ++ TSAK N+ F +IA
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R + V+ + +SF T + E++ R + +V +LVGNK
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
+DL DKRQVS+EE + +A + NV ++ETSAK N+ +F
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R + V+ + +SF T + E++ R + +V +LVGNK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
+DL DKRQVS+EE + +A + NV ++ETSAK N+ +F
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ +Y R + V+ + +SF T + E++ R + +V +LVGNK
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
+DL DKRQVS+EE + +A + NV ++ETSAK N+ +F
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K++ LGD VGK+S++ R++ +KFD+ TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE----VRTERGSDVIIVLVGNKTDL 126
F+SL + R + ++ + V RQSF N W +E + V++GNK D
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDK 128
Query: 127 VDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165
D RQV+ EE + E + ++ETSAK N+ F +
Sbjct: 129 ED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEE 167
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + DT
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ +Y R + V+ + +SF T + E++ R + +V +LVGNK+
Sbjct: 60 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
DL DKRQVS+EE + +A + NV ++ETSAK N+ +F
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 40/197 (20%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
+ YK V LG+ SVGK+SI+ R D F TIG F + + L D
Sbjct: 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57 --------------------------TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90
++ +WDTAGQER+ S++P Y R ++ A++V+D
Sbjct: 66 NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91 VASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE 150
+++ + WV +++ S+ II+LV NK D +K QV I E + A++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIKALFRKIA 167
TSAK G NIK +F +A
Sbjct: 183 TSAKTGTNIKNIFYMLA 199
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
++LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAG E + ++ +Y R + V+ + +SF T + E++ R + +V +LVGNK
Sbjct: 61 TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
+DL DKRQVS+EE + +A + NV ++ETSAK N+ +F
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S+LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + D
Sbjct: 3 SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVI-IVLVGN 122
TAG E + ++ +Y R ++V+ + +SF T ++ E++ R + D I +++VGN
Sbjct: 62 TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
K+DL ++RQV +EE +KA E V ++ETSAK N+ +F
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 162
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
LA +K++ +G VGK+++ +FMYD+F Y+ T D K + L+ V++ + DTA
Sbjct: 1 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVI-IVLVGNKT 124
G E + ++ +Y R ++V+ + +SF T ++ E++ R + D I +++VGNK+
Sbjct: 60 GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
DL ++RQV +EE +KA E V ++ETSAK N+ +F
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 158
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
S + + K+V LGD + GKTS+ T F + F Y+ TIG+DF + + L + V LQ+W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW---VEEVRTERGSDVIIVLV 120
D GQ ++ YI + ++VYD+ + QSF N W V++V E + ++ LV
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
GNK DL R + E+ +E SAK G ++ F+K+AA + G++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 133
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 134 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 92/172 (53%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 121
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 122 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I +DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E++ L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 91/173 (52%), Gaps = 11/173 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y T+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS 177
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y T+G++ + ++ +WDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+F L Y ++ A+I++DV SR ++ N W ++ ++ IVL GNK D V +
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 130
Query: 130 RQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
R+V +AK R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 131 RKV-----KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+F L Y ++ A+I++DV SR ++ N W ++ ++ IVL GNK D V +
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 123
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
R+V + R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD GKT+ + R + +F+ Y ATIG++ + Y ++ +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+F L Y ++ A+I++DV SR ++ N W ++ ++ IVL GNK D V +
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 122
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
R+V + R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 130
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 131 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 176
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 124
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 125 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + +F+ Y AT+G++ + ++ +WDTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 128
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 129 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV +GD GKT+ + R + + + Y AT+G++ + ++ +WDTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
E+F L Y + A+I++DV SR ++ N W ++ ++ IVL GNK D+ D
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 133
Query: 129 KRQVSIEEGEAKA----RELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ +AK+ R+ N+ + + SAK+ +N + F +A L G L
Sbjct: 134 RKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
YK+ +GD VGKT+ I R + +F+ Y AT+G +L+D+ ++ +WDTAG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
QE+ L Y +S A++ +DV SR + N +WV+E + G++ IV+ NK D+
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
+++++S + + N + E SAK N F +A G L
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S KY+LV +G VGK+++ +F+ F Y TI D +K ++DR RL + D
Sbjct: 1 SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAGQE F ++ Y+R ++V+ V R SF K+ ++ R + + ++L+GNK
Sbjct: 60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
DL +RQV+ EEG+ AR+L V ++E SAK N+ F ++
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F + Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y+++ +VY + ++ +F + E++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALF 163
L D+R V E+G+ AR+ N F+E+SAK+ N+ +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y+++ +VY + ++ +F + E++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALF 163
L D+R V E+G+ AR+ N F+E+SAK+ N+ +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P R + V ++ + + S+ S+ N KW+ E+R V I+LVG K DL D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KAREL-----NVMFIETSAKAGFNIKALF 163
+Q I+ A + EL + ++IE S+K N+KA+F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E+F ++ Y+++ +VY + ++ +F + E++ R + DV ++LVGNK D
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
L D+R V E+G+ AR+ N F+E+SAK+ N+ +F
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ +YKLV LG VGK+++ +F+ F Y TI D K + ++ + L++ DT
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AG E+F ++ Y+++ +VY + ++ +F + E++ R + DV ++LVGNK
Sbjct: 61 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKC 120
Query: 125 DLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
DL D+R V E+G+ AR+ N F+E+SAK+ N+ +F
Sbjct: 121 DLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + + TV L LWDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P R + V ++ + + S+ S+ N + KW+ E++ V IVLVG K DL D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KARELNVM-----FIETSAKAGFNIKALF 163
+Q I+ A + EL + +IE S+K+ N+K +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
+ Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-D 114
L +W+ G+ + L ++ +IVY + R SF ++ ++R R + D
Sbjct: 61 ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
+ I+LVGNK+DLV R+VS+ EG A A + FIETSA N+K LF I
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGI 166
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++A Y++V LGD VGKTS+ + F K + +G D +T+ ++ L + DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66 AGQERFRSLIP--SYIRDSSVAVIVYDVASRQSFLNTTKW-VEEVRTERGSDVIIVLVGN 122
E+ S ++ S VIVY +A R SF + ++ ++ RT + V I+LVGN
Sbjct: 60 WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
K DL R+VS+EEG A A + FIETSA N+ LF
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 10 YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIV 118
L +W+ G+ + L ++ +IVY + R SF ++ ++R R + D+ I+
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
LVGNK+DLV R+VS+ EG A A + FIETSA N+K LF I
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 166
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 19/168 (11%)
Query: 10 YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-DVIIV 118
L +W+ G+ + L ++ +IVY + R SF ++ ++R R + D+ I+
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
LVGNK+DLV R+VS+ EG A A + FIETSA N+K LF I
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
+ Y++V +G+Q VGK+++ F ++D D +TY+ T+ +D S T+ L
Sbjct: 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS-D 114
L +W+ G+ + L ++ +IVY + R SF ++ ++R R + D
Sbjct: 61 ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
+ I+LVGNK+DLV R+VS+ EG A A + FIETSA N+K LF I
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 19/185 (10%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKTS++ + + + Y T D S + ++ R VRLQL DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
F L P ++ + ++ + V S SF N + KWV E+R I+LVG ++DL +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKARELN-------------VMFIETSAKAGFNIKALFRKIAAALPGMETL 176
+V IE + K + + +IE SA N+K +F AA + G++
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD--AAIVAGIQ-Y 196
Query: 177 SSTKQ 181
S T+Q
Sbjct: 197 SDTQQ 201
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P R + + V+ + + S+ S+ N KW+ E+R +V IVLVG K DL D
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +GE +++ +IE S+K N+KA+F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 16/171 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD GKTS++ F F +Y T+ ++ + ++ + V L +WDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTD---- 125
+ L P + D+SV ++ +DV S SF N +W EV V I++VG KTD
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 126 --LVDK------RQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKIA 167
LV+K V+ G+ AR + V ++E SA+ N+ A+F++ A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
Y++ G VGK+S++ RF+ F +Y T+ D + + + LQ+ DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLV 127
+F ++ I ++VY + SRQS E++ +G + I+LVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R+V E EA AR F+ETSAK N+K LF+++
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ TV L LWDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P R + V ++ + + S+ S+ N KW+ E++ + IVLVG K DL D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+Q ++ +GE + + V ++E S+K N+KA+F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V++I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V++I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V++I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V++I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
DL R V ++ + AR + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
SA + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWD
Sbjct: 5 SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWD 63
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 64 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
A+ KL G VGK++++ RF+ +F Y T+ + + ++D V +++ DTAG
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSF---LNTTKWVEEVRTERGSDVIIVLVGNKT 124
QE ++R V+VYD+ R SF L ++E++ + +V ++LVGNK
Sbjct: 86 QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKIA 167
DL RQVS EEGE A EL F E SA G NI +F ++
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
+ +Y D + ++VY V S +SF E ++ G + I+LVGN
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
K DL +R +S EEG+A A N F+E+SAK +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
+ +Y D + ++VY V S +SF E ++ G + I+LVGN
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
K DL +R +S EEG+A A N F+E+SAK +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++Y TI F +K + + + LQL DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
+ +Y D + ++VY V S +SF E ++ G + I+LVGN
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
K DL +R +S EEG+A A N F+E+SAK +FR+I
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTAGQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLV 127
E + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK DL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAK 154
R V ++ + AR + FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR I+LVG K DL D
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAALPG 172
+ ++ +G A ARE+ +V ++E SA +K +F + A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR I+LVG K DL D
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAAALPG 172
+ ++ +G A ARE+ +V ++E SA +K +F + A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G + VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKAREL-NVMFIETSAKAGFNIKALF 163
+ ++ +G A ARE+ +V ++E SA +K +F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 5 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 64 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 3 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A ++ ++E SAK ++ +F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 4 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGK ++ + + F Y T+ D S + ++ + V L LWD
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P + V +I + + S SF N KW EVR + I+LVG K
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
DL D + ++ +G A A+E+ V ++E SA +K +F
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A ++ ++E SAK ++ +F
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 3 AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 6 ALAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
L +Y K+V LG + VGKTS+ +F+ +F Y T+ + SK + L L L D
Sbjct: 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNK 123
TAGQ+ + L S+I V+VY V S SF +++ G + V +VLVGNK
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
DL +R+V EG+ A F+E+SA+ + +F K+
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S S+ N KW EVR S II LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E++ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S S+ N KW EVR S II LVG K DL D
Sbjct: 70 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E++ V ++E SA +K +F
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S S+ N KW EVR S II LVG K DL D
Sbjct: 71 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E++ V ++E SA +K +F
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 16/164 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+ LG +SVGK+S+ +F+ +F ++ TI F +K + + + LQL DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
+ +Y D + ++VY V S +SF E ++ G + I+LVGN
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
K DL +R +S EEG+A A N F+E+SAK +FR+I
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + V S S N KWV EV+ +V I+LV NK
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVDKRQVSIE------------EGEAKARELNVM-FIETSAKAGFNIKALF 163
DL V E +G A A + ++E SAK ++ +F
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF N KW EVR + I+LVG K DL D
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 17/190 (8%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
+SA+ K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGN 122
DTAGQE + L P + V ++ + V S SF N KWV E+ T +LVG
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAA 168
+ DL D ++ ++ E E AR+L V ++E SA +K +F I A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 182
Query: 169 ALPGMETLSS 178
AL E S
Sbjct: 183 ALEPPEPKKS 192
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
VS + YK++ LG VGK+++ ++ ++ +A +++ ++ L ++
Sbjct: 2 VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGN 122
D Q+ R L + VIVY V + SF ++ ++R R +D V I+LVGN
Sbjct: 60 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
K+DLV R+VS++EG A A + FIETSA N++ALF +
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A + ++E SAK ++ +F
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + V EEG A ++ ++E SAK ++ +F
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YK++ LG VGK+++ ++ ++ +A +++ ++ L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLVD 128
R L + VIVY V + SF ++ ++R R +D V I+LVGNK+DLV
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R+VS++EG A A + FIETSA N++ALF +
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YK++ LG VGK+++ ++ ++ +A +++ ++ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKTDLVD 128
R L + VIVY V + SF ++ ++R R +D V I+LVGNK+DLV
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166
R+VS++EG A A + FIETSA N++ALF +
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAGQ
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
E + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK DL
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
+ + V EEG A + ++E SAK ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAGQ
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
E + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK DL
Sbjct: 62 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
+ + V EEG A + ++E SAK ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ KLV +GD + GKT ++ +F Y T+ ++++ + ++ R V L LWDTAGQ
Sbjct: 10 RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQ 68
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLV 127
E + L P DS+V +I + + S N KW+ EV V I+LVG K DL
Sbjct: 69 EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLR 127
Query: 128 DKRQ------------VSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
+ Q V+ +EG++ A ++ + E SAK G+ ++ +F
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD +VGKT ++ F + Y T+ +F S M ++ L LWDTAGQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P DS V ++ + V +R SF N +TKW E++ + VLVG K DL
Sbjct: 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK 165
V+ +EG+ ++L V +IE S+ A + +F K
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K+V +GD +VGKT ++ F + Y T+ +F S M ++ L LWDTAGQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P DS V ++ + V +R SF N +TKW E++ + VLVG K DL
Sbjct: 83 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRK 165
V+ +EG+ ++L V +IE S+ A + +F K
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +G VGK+++ +F+ F + Y TI D +K ++ RL + DTAGQE
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVD 128
F ++ Y+R ++V+ + RQSF K ++ R + D +VLVGNK DL
Sbjct: 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
+RQV E A +V + E SAK N+ F ++ A+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 16/172 (9%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A + KLV +GD + GKT ++ F D+F Y T+ ++++ + ++ + V L LWDT
Sbjct: 2 AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT 124
AGQE + P D+ V ++ + + S S N KW EV+ +V I+LVGNK
Sbjct: 61 AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DLVDKRQVSIE------------EGEAKARELNVM-FIETSAKAGFNIKALF 163
DL + + E EG A + ++E SAK ++ +F
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF + KW EVR + I+LVG K DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF + KW EVR + I+LVG K DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
+ L P + V +I + + S SF + KW EVR + I+LVG K DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 R------------QVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
+ ++ +G A A+E+ V ++E SA +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P + V ++ + V S SF N KWV E+ T +LVG +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
DL D ++ ++ E E AR+L V ++E SA +K +F I AA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
Query: 170 LPGMETLSS 178
L E S
Sbjct: 180 LEPPEPKKS 188
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P + V ++ + V S SF N KWV E+ T +LVG +
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
DL D ++ ++ E E AR+L V ++E SA +K +F I AA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
Query: 170 LPGMETLSS 178
L E S
Sbjct: 179 LEPPEPKKS 187
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P + V ++ + V S SF N KWV E+ T +LVG +
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
DL D ++ ++ E E AR+L V ++E SA +K +F I AA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
Query: 170 LPGMETLSS 178
L E S
Sbjct: 180 LEPPEPKKS 188
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F + Y TI +L T ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R +IVY V + SF + ++ + + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
NK DL+ R+V+ ++G+ A + N+ +IETSAK N+ F +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
+ DTAGQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLV
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
GNK DL R V + + AR + +IETSAK ++ F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
+ DTAGQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLV
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
GNK DL R V + + AR + +IETSAK ++ F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
S
Sbjct: 183 KKS 185
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 183
Query: 176 LSS 178
S
Sbjct: 184 KKS 186
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YK+V LG VGK+++ +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E+F S+ YI++ ++VY + ++QSF + +++ R +R V ++LVGNK D
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
L +R+VS EG A A E F+ETSAK+ + LF +I +
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
S
Sbjct: 183 KKS 185
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + D F Y T+ D + ++ + + L L+DTAGQE
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V +I + V + SF N +WV E++ E +V +L+G + DL D
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163
++ + +E+G+ A+E+ ++E SA +K +F
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
S
Sbjct: 183 KKS 185
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ KLV +GD + GKT ++ D+F Y T+ ++++ + ++ + V L LWDTAG
Sbjct: 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGL 66
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDL- 126
E + L P D+ V ++ + + S S N KW EV+ +V I+LVGNK DL
Sbjct: 67 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 125
Query: 127 -----------VDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALF 163
+ + V EEG A + ++E SAK ++ +F
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
++A + K+ +G+ +VGK+++I+ F KF Y T G++ + + + D TV ++
Sbjct: 15 ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62 LW--DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE---EVRTERGSDVI 116
L+ DTAG + ++ I Y A++V+DV+S +SF + W E R +R +
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVDKR-QVSIEEGEAKARELNVMFIETSA-KAGFNIKALFRKIA 167
VLV NKTDL +R QV ++ + A + F + SA G + A F IA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 35/186 (18%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + + F Y T+ D S + ++ + V L LWDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71 FRSLIP---------SYIRD----------SSVAVIVYDVASRQSFLNT-TKWVEEVRTE 110
+ L P +Y +D + V +I + + S SF N KW EVR
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKAGF 157
+ I+LVG K DL D + ++ +G A A+E+ V ++E SA
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 158 NIKALF 163
+K +F
Sbjct: 185 GLKTVF 190
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F Y TI +L T ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R +IVY V + SF + ++ + + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
NK DL+ R+V+ ++G+ A + N+ +IETSAK N+ F +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
S
Sbjct: 183 KKS 185
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
S
Sbjct: 183 KKS 185
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 22 KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81
K+S++ RF+ F +TY TI D + + + LQ+ DT G +F ++ I
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDKRQVSIEEGEA 139
++V+ V S+QS + + +GS D+ ++LVGNK D +R+V E +A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQA 138
Query: 140 KARELNVMFIETSAKAGFNIKALFRKI 166
A+E F+ETSAK +N+K LF+++
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F Y TI +L T ++++ L +
Sbjct: 7 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R +IVY V + SF + ++ + + R + ++LV
Sbjct: 66 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
NK DL+ R+V+ ++G+ A + N+ +IETSAK N+ F +
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 171
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + K V +GD +VGK ++ + +KF + Y T+ D + T+ + L L+D
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNK 123
TAGQE + L P + V ++ + V S SF N KWV E+ T +LVG +
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDLVD------------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAA 169
DL D ++ ++ E E AR+L V ++E SA +K +F I AA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 170 LPGMETLSS 178
L E S
Sbjct: 184 LEPPEPKKS 192
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
P L YKLV +GD VGK+++ +F F + Y TI D K ++++ L +
Sbjct: 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVG 121
DTAGQE F ++ Y+R +IVY V + SF + ++ + + R + ++LV
Sbjct: 71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKALFRKI 166
NK DL+ R+V+ ++G+ A + N+ +IETSAK N+ F +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y + D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
DL R V ++ + AR + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK+
Sbjct: 60 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
DL R V ++ + AR + FIETSAK
Sbjct: 120 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +K + Y T+ D + T+ + L L+DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
P+ ++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L
Sbjct: 1 GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLV 120
+ DTAG E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLV
Sbjct: 60 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
GNK DL R V + + AR + +IETSAK ++ F
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAALPGMET 175
++ ++ E E AR+L V ++E SA +K +F I AAL E
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 186
Query: 176 LSS 178
S
Sbjct: 187 KKS 189
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K V +GD +VGKT ++ + +KF + Y T+ D + T+ + L L+DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD- 128
+ L P + V ++ + V S SF N KWV E+ T +LVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF-RKIAAAL 170
++ ++ E E AR+L V ++E SA +K +F I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ LG+ VGK+++ F + DN ++ D + + ++ V L ++D Q
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70 RFRSLIPSYIRDSSVA-VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
+ + + A +IV+ V R+SF + + +R R D+ ++LVGNK+DL
Sbjct: 73 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R+VS+EEG A L+ IETSA N + LF
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 7 SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 65
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK
Sbjct: 66 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 125
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
DL R V + + AR + +IETSAK ++ F
Sbjct: 126 DLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 4 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
LWDT+G + ++ P DS ++ +D+ SR +++ KW E+ + ++L
Sbjct: 63 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
+G KTD L ++Q +S E+G A A++L +++E SA + +I ++FR
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 179
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 3 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
LWDT+G + ++ P DS ++ +D+ SR +++ KW E+ + ++L
Sbjct: 62 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
+G KTD L ++Q +S E+G A A++L +++E SA + +I ++FR
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 178
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK+D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 19/179 (10%)
Query: 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
AP +A+ KLV +GD GKT+++ D + TY T+ ++ + + E++ V L
Sbjct: 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62 LWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVL 119
LWDT+G + ++ P DS ++ +D+ SR +++ KW E+ + ++L
Sbjct: 79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI-SRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTD----------LVDKRQ--VSIEEGEAKARELNV-MFIETSA-KAGFNIKALFR 164
+G KTD L ++Q +S E+G A A++L +++E SA + +I ++FR
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
S + +YKLV +G VGK+++ + + + F + Y +I D K + ++ T L + D
Sbjct: 5 SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNK 123
TAGQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK
Sbjct: 64 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
DL R V + + AR + +IETSAK ++ F
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AGQE + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK
Sbjct: 77 AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
DL R V ++ A+ + FIETSAK ++ F
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKT 124
AG E + ++ Y+R + V+ + + +SF + + E++ R + DV +VLVGNK
Sbjct: 77 AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAK 154
DL R V ++ + AR + FIETSAK
Sbjct: 137 DLP-SRTVDTKQAQDLARSYGIPFIETSAK 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK ++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGN+ D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI + K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y +I D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + + TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G+E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DT
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ VGK+++ F + D+ ++ D + + ++ V L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70 RFRSLIPSYIRDSSVA-VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLV 127
+ + + A +IV+ V R+SF + + +R R D+ ++LVGNK+DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
R+VS+EEG A L+ IETSA N + LF
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K++ +G+ VGK+++ F + D+ ++ D + + ++ V L ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ- 82
Query: 70 RFRSLIPSYIRDSSVA-----VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNK 123
++RD + +IV+ V R+SF + + +R R D+ ++LVGNK
Sbjct: 83 ---GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
+DL R+VS+EEG A L+ IETSA N + LF
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
QE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
GQE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK+D
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
QE + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ +YKLV +G VGK+++ + + + F + Y TI D K + ++ T L + DTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTD 125
G E + ++ Y+R + V+ + + +SF + ++ E++ R + DV +VLVGNK D
Sbjct: 60 GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163
L R V + + AR + +IETSAK ++ F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
+ ++ P DS +I +D+ SR L++ KW E++ E + ++LVG K+D
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 144
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
L + RQ VS ++G A+++ +IE SA
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
+ ++ P DS +I +D+ SR L++ KW E++ E + ++LVG K+D
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 123
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
L + RQ VS ++G A+++ +IE SA
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K K+V +GD GKT+++ F D F Y T+ ++ + + ++ + + L LWDT+G
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTT--KWVEEVRTERGSDVIIVLVGNKTD- 125
+ ++ P DS +I +D+ SR L++ KW E++ E + ++LVG K+D
Sbjct: 82 PYYDNVRPLSYPDSDAVLICFDI-SRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDL 139
Query: 126 ---------LVDKRQ--VSIEEGEAKARELN-VMFIETSA 153
L + RQ VS ++G A+++ +IE SA
Sbjct: 140 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
KL +G+ GKT+++ + K + AT+GID + + D+ R L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRTERGSDVIIVLVGNKT 124
AG+E F S P + ++ + VYD++ Q+ ++ K W+ ++ R S ++LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVDKRQ 131
D+ D++Q
Sbjct: 121 DVSDEKQ 127
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
+ KL +G+ GKT+++ + K + AT+GID + + D+ R L +W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTK-WVEEVRTERGSDVIIVLVGN 122
D AG+E F S P + ++ + VYD++ Q+ ++ K W+ ++ R S ++LVG
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVDKRQ 131
D+ D++Q
Sbjct: 121 HLDVSDEKQ 129
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
+ RS +Y + + V D A RQ + + ++ + ER + +++ NK DL
Sbjct: 71 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
+ RS +Y + + V D A RQ + + ++ + ER + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +L+ LG + GKT+I+ +F + D T T+G + KT LE R +L +WD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
+ RS +Y + + V D A RQ + + ++ + ER + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + + +L +G Q GKT+ + +F+ T+G + T V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
+LWD GQ RFRS+ Y R S V + D A ++ + + + + I VLV
Sbjct: 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
GNK DL
Sbjct: 130 LGNKRDL 136
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
L LG + GK+++ +F+ +F + Y + D S ++ + V L++ DTA +
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR---TERGSDVIIVLVGNKTDLV 127
R+ Y+ + ++VY V SRQSF +++ ++E + E + +L+GNK D+
Sbjct: 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGF-NIKALFRK 165
RQV+ EG A A +F E SA F +++ +F +
Sbjct: 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + + +L +G Q GKT+ + +F T+G + T V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
++WD GQ RFRS+ Y R + V + D A R+ + + + + I VLV
Sbjct: 70 KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL---VDKRQV 132
GNK DL +D++Q+
Sbjct: 130 LGNKRDLPNALDEKQL 145
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+L +G Q GKT+ + +F+ T+G + T V ++LWD GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDL 126
FRS+ Y R S V + D A ++ + + + + I VLV GNK DL
Sbjct: 89 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 378
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 19 SVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78
+ GKT+I+ +F + D T T+G + KT LE R +L +WD GQ+ RS +Y
Sbjct: 28 NAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDL 126
+ + V D A RQ + + ++ + ER + +++ NK DL
Sbjct: 83 FESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 117 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 128
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 129 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 158
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 69
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 129
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 130 MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 159
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+I+ + + T T+G + + T + V+ +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVD- 128
R L Y + + V D A R + + + +R D II++ NK DL D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDA 116
Query: 129 --KRQVSIEEGEAKARELNVMFIETSAKAG 156
++ + G + R+ N + A +G
Sbjct: 117 XKPHEIQEKLGLTRIRDRNWYVQPSCATSG 146
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
+ P + ++K++ +G + GKT+I+ +F ++ +T TIG S + R
Sbjct: 14 LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRF 68
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ 95
+WD GQE RS +Y ++ ++V D R+
Sbjct: 69 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY----LED----RTV 58
L + K+ +GD GKTS++ + + + FD T G++ ++K LE+ +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV 118
WD GQE + ++ SSV +++ D + N W+ + G +IV
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYGGKSPVIV 155
Query: 119 LVGNKTDLVDKRQVSIEEGEAKAR--ELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176
++ NK D + +IE+ + R + F S K G ++++ + + +A+ +++
Sbjct: 156 VM-NKID--ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212
Query: 177 SST 179
T
Sbjct: 213 YGT 215
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 71
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSF------LNTTKWVEEVRTERGSDVIIVLVGN 122
+R R L Y +++ + V D R+ L V+E+R D +++L N
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFAN 126
Query: 123 KTDLVDKRQVS 133
K DL + +S
Sbjct: 127 KQDLPNAMAIS 137
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+++ + + + T G + S ++ + +L +WD GQ +
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIKS----VQSQGFKLNVWDIGGQRK 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDLVDK 129
R SY ++ + + V D A R+ F T + + E+ E + VL+ NK DL+
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 130 RQVS-IEEG 137
S I EG
Sbjct: 134 APASEIAEG 142
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG + GKT+++ + + + T G + S ++ + +L +WD GQ +
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDLVDK 129
R SY ++ + + V D A R+ F T + + E+ E + VL+ NK DL+
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 130 RQVS-IEEG 137
S I EG
Sbjct: 133 APASEIAEG 141
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
++ +++ LG + GKT+++ + + + T G + S ++ + +L +WD G
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDL 126
Q + R SY ++ + + V D A R+ F T + + E+ E + VL+ NK DL
Sbjct: 58 QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VDKRQVS-IEEG 137
+ S I EG
Sbjct: 118 LTAAPASEIAEG 129
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 75
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
E RS +Y ++ ++V D R+
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHEQ 91
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK 129
R + +Y+ + V + D A + + + + T E S+V I+++GNK D D
Sbjct: 92 ARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDA 151
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
E K RE+ ++ +T+ K +K L
Sbjct: 152 IS------EEKLREIFGLYGQTTGKGNVTLKEL 178
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F+ ++ +T TIG S + + +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIG----SNVEEIVVKNTHFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
E RS +Y ++ ++V D R+
Sbjct: 71 ESLRSSWNTYYSNTEFIILVVDSIDRE 97
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
E RS +Y ++ ++V D R+
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++K++ +G + GKT+I+ +F ++ +T TIG S + R +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ 95
E RS +Y ++ ++V D R+
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHIQ 78
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK 129
R + +Y+ + V + D A + L + + ++ + T E ++V I+++GNK D
Sbjct: 79 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 134
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
R +I E + RE+ ++ +T+ K ++K L
Sbjct: 135 RPEAIS--EERLREMFGLYGQTTGKGSVSLKEL 165
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG GKT+I+ R + T TIG + + T + ++ Q+WD GQ
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTY----KNLKFQVWDLGGQTS 58
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSF-LNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
R Y ++ + V D R ++ ++ V + E I+V+ NK D+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E R + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEE-VRTERGSDVIIVLVGNKTDL 126
R L Y ++ + V D R+ + + + + E D II++ NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGHIQ 81
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK 129
R + +Y+ + V + D A + L + + ++ + T E ++V I+++GNK D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 137
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
R +I E + RE+ ++ +T+ K ++K L
Sbjct: 138 RPEAIS--EERLREMFGLYGQTTGKGSVSLKEL 168
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
+ +++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 83
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLV 127
++ R L Y +++ + V D R+ + ++++ E D ++++ NK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 128 DKRQVS 133
+ VS
Sbjct: 144 NAMPVS 149
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 221
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
R L Y +++ + V D R+ V E R E D ++++ N
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 274
Query: 123 KTDL---VDKRQVSIEEGEAKARELNVMFIETSAKAG 156
K DL ++ +++ + G R N T A +G
Sbjct: 275 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 311
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLVFLG + GKT+++ D+ Q + S+ + + T +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELTIAGMT--FTTFDLGGGIQ 72
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDK 129
R + +Y+ + V + D A + L + + ++ + T E ++V I+++GNK D
Sbjct: 73 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID---- 128
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
R +I E + RE+ ++ +T+ K ++K L
Sbjct: 129 RPEAIS--EERLREMFGLYGQTTGKGSVSLKEL 159
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
++ +++ LG + GKT+++ + + + T G + S ++ + +L +WD G
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV-GNKTDL 126
+ R SY ++ + + V D A R+ F T + + E+ E + VL+ NK DL
Sbjct: 58 LRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VDKRQVS-IEEG 137
+ S I EG
Sbjct: 118 LTAAPASEIAEG 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
R L Y +++ + V D R+ V E R E D ++++ N
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 126
Query: 123 KTDL---VDKRQVSIEEGEAKARELNVMFIETSAKAG 156
K DL ++ +++ + G R N T A +G
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 163
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 72
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
R L Y +++ + V D R+ V E R E D ++++ N
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 125
Query: 123 KTDL---VDKRQVSIEEGEAKARELNVMFIETSAKAG 156
K DL ++ +++ + G R N T A +G
Sbjct: 126 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 162
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE--------RGSDVIIVLVGN 122
R L Y +++ + V D R+ V E R E D ++++ N
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 109
Query: 123 KTDL---VDKRQVSIEEGEAKARELNVMFIETSAKAG 156
K DL ++ +++ + G R N T A +G
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ LG GKT+I+ R + T + TIG + + L + ++L +WD GQ
Sbjct: 20 RILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQTS 74
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE-EVRTERGSDVIIVLVGNKTD 125
R Y D++ + V D + +K + ++ E D +++ NK D
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKTSI+ + + T TIG + + +E + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDK 129
R L Y +++ + V D R + + ++ E + I+++ NK DL
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 130 RQVS 133
+S
Sbjct: 134 MSIS 137
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G + GKT+I+ + + T TIG + + +E + + +WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 76
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDL--- 126
R L Y +++ + V D R + + + E D ++++ NK DL
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 136
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAG 156
++ +++ + G R+ + T A +G
Sbjct: 137 MNAAEITDKLGLHSLRQRHWYIQSTCATSG 166
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASR 94
RSL Y R++ + V D R
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASR 94
RSL Y R++ + V D R
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + ++ + + +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVET----VQYKNISFTVWDVGGQDR 56
Query: 71 FRSLIPSYIRDSSVAVIVYDVASR 94
RSL Y R++ + V D R
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+FLG + GKT+++ D+ AT+ + + L ++ +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
R L Y + + V + D A + F +E R E + DV V++GN
Sbjct: 58 ARRLWKDYFPEVNGIVFLVDAADPERF-------DEARVELDALFNIAELKDVPFVILGN 110
Query: 123 KTD 125
K D
Sbjct: 111 KID 113
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KL+FLG + GKT+++ D+ AT+ + + L ++ +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--------DVIIVLVGN 122
R L Y + + V + D A + F +E R E + DV V++GN
Sbjct: 80 ARRLWKDYFPEVNGIVFLVDAADPERF-------DEARVELDALFNIAELKDVPFVILGN 132
Query: 123 KTD 125
K D
Sbjct: 133 KID 135
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 77 SYIRDSSVAVIVYDVAS----RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV 132
++I D + VIV V S R FL + EV+ I+LV NK DL+ K+
Sbjct: 75 NFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKN-------IILVLNKFDLLKKKGA 127
Query: 133 SIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172
I+ + + +EL V I T+AK G ++ L R IA G
Sbjct: 128 KIDIKKMR-KELGVPVIPTNAKKGEGVEELKRMIALMAEG 166
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ + +L LGD GK+S+I RF+ + + T + K M ++ +T + + +
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIREE 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGN 122
AG + + + + V+ + SF ++ ++ + RG + + LVG
Sbjct: 62 AGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116
Query: 123 KTDLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNIKALFRKIA 167
+ + + G+A+AR L + ET A G N+ +F+++A
Sbjct: 117 QDRISASSPRVV--GDARARALCADMKRCSYYETCATYGLNVDRVFQEVA 164
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
+++ +G GKT+++ + + T TIG + + Y + +WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFN-VECVQYC---NISFTVWDVGGQDR 73
Query: 71 FRSLIPSYIRDSSVAVIVYDVASR 94
RSL Y ++ + V D R
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
++ + +L LGD GK+S+I RF+ + + T + K M ++ +T + + +
Sbjct: 4 SIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIREE 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGN 122
AG + + + + V+ + SF ++ ++ + RG + + LVG
Sbjct: 62 AGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116
Query: 123 KTDLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNIKALFRKIA 167
+ + + G+A+AR L + ET A G N+ +F+++A
Sbjct: 117 QDRISASSPRVV--GDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
++ LG + GKT+II + K N I + ++ ++D +GQ R
Sbjct: 23 HVLCLGLDNSGKTTIINKL---KPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 71 FRSLIPSYIRDSSVAVIVYDVASR------QSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
+R+L Y ++ + V D + R + L+T +++ R + I+ NK
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR---IPILFFANKM 136
Query: 125 DLVD 128
DL D
Sbjct: 137 DLRD 140
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
K +++ LG + GKTSI+ R D L Y + + ++WD GQ
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLG--DVVTTVPTVGVNLETLQY---KNISFEVWDLGGQ 76
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASR 94
R Y D+ + V D R
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDR 102
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 36/183 (19%)
Query: 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---- 67
++F G +VGK+++I R K + + K + +E + ++ D G
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV----TRKIIEIEWKN--HKIIDXPGFGFX 57
Query: 68 -------QERFRSLIPSYIRDSS----VAVIVYDVASRQSFLNTTKW---------VEEV 107
QER + I +I D++ VAV+V D + + +W VE
Sbjct: 58 XGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIK--RWEKRGEIPIDVEFY 115
Query: 108 RTERGSDVIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKAGFNIKALF 163
+ R D+ ++ NK D + Q I E+ E E++ +FI SAK G NI+ L
Sbjct: 116 QFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK 175
Query: 164 RKI 166
+I
Sbjct: 176 NRI 178
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 43 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN 99
G+D ++ +Y + ++ LQL + + RF + + + + VAV ++ + +QS+ N
Sbjct: 11 GVDLGTENLYFQ--SMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQN 65
>pdb|4AU9|A Chain A, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
pdb|4AU9|B Chain B, Crystal Structure Of A Fungal Dyp-type Peroxidase From
Auricularia Auricula-judae
Length = 448
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 100 TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE 136
T+ WV + G +I+L + TDL+D++ SIE
Sbjct: 102 TSSWVPQF-AGTGIHGVIILASDTTDLIDQQVASIES 137
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 VLVGNKTDLVDKRQVSIEEGEAKARELNVMF------IETSAKAGFNIKALFRKIAAALP 171
V+V NK DL D E+ K REL ++ ++TSAK G I+ L + +
Sbjct: 119 VMVINKMDLYD------EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKIS 172
Query: 172 GMETLSSTKQEDLVD 186
M LS + L++
Sbjct: 173 TMAGLSGVGKSSLLN 187
>pdb|4H5B|A Chain A, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
pdb|4H5B|B Chain B, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
Length = 153
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 40 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN 99
A + +D L+K YL+++ V+L + + GQ R + D++V V V D + S L
Sbjct: 4 ALLTLDTLAK--YLQEKEVQLDIEENGGQRFIRMGWRFEMGDAAVLVSVNDGPNNTSRLE 61
Query: 100 TTKWVEEVRTERGSDVIIVL 119
T ++ +R ++V ++L
Sbjct: 62 ITCVTQKTYADRRAEVAMML 81
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35
A Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35
A Resolution
Length = 336
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN 99
L+L + G+ R+ ++ + + VAV V+ A+RQ+F+N
Sbjct: 15 LKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFIN 54
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin Subcomponent
(Ntnha) From Clostridium Botulinum Serotype D Strain 4947
Length = 1196
Score = 27.7 bits (60), Expect = 4.6, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQ 61
V L L+F+ D++V SI ++ N Y + I ++K ++Y+E+ +V +
Sbjct: 969 VDRLKDQLLIFINDKNVANVSI------EQILNIYSTNV-ISLVNKNNSIYVEELSVLDK 1021
Query: 62 LWDTAGQERFRS----LIPSYIRDSSVAVIVYD 90
A +E R+ L SYIRDSS +++ Y+
Sbjct: 1022 --PVASEEVIRNYFSYLDNSYIRDSSKSLLEYN 1052
>pdb|2EPH|A Chain A, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|B Chain B, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|C Chain C, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2EPH|D Chain D, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.7 Angstrom Resolution
pdb|2PC4|A Chain A, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|B Chain B, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|C Chain C, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
pdb|2PC4|D Chain D, Crystal Structure Of Fructose-Bisphosphate Aldolase From
Plasmodium Falciparum In Complex With Trap-Tail
Determined At 2.4 Angstrom Resolution
Length = 369
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 151 TSAKAGF-NIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
T+ GF ++ L R + ALPG+ LS + E+ VNL
Sbjct: 252 TTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNL 291
>pdb|1A5C|A Chain A, Fructose-1,6-Bisphosphate Aldolase From Plasmodium
Falciparum
pdb|1A5C|B Chain B, Fructose-1,6-Bisphosphate Aldolase From Plasmodium
Falciparum
Length = 368
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 151 TSAKAGF-NIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
T+ GF ++ L R + ALPG+ LS + E+ VNL
Sbjct: 251 TTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNL 290
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
D R +S+EE + L V F E +AG N K++
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV 72
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
D R +S+EE + L V F E +AG N K++
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV 72
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162
D R +S+EE + L V F E +AG N K++
Sbjct: 38 DSRPISVEELSKFSERLGVNFFEILNRAGMNTKSV 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,968,046
Number of Sequences: 62578
Number of extensions: 175022
Number of successful extensions: 1082
Number of sequences better than 100.0: 358
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 360
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)