BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028466
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/208 (94%), Positives = 203/208 (97%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKW++EVRTERGSDVI+VLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
GNKTDLVDKRQVSIEE EAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
QED+VDVNLKSSN N S +Q QSGGC+C
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208
>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2
SV=1
Length = 207
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/208 (88%), Positives = 197/208 (94%), Gaps = 1/208 (0%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT+KW+E+VRTERGSDVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
GNKTDLVDKRQVSIEEG+ KAR+ V+FIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
QED+VDVNLK+S +N++Q + Q GGCAC
Sbjct: 181 QEDMVDVNLKTS-SNSAQGEQQRGGCAC 207
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 359 bits (921), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 174/208 (83%), Positives = 188/208 (90%), Gaps = 1/208 (0%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+R SFLNT+KW+EEVR ER DVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120
Query: 121 GNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
GNKTDLV+KRQVSIEEG++K RE VMFIETSAKAGFNIK LFRKIAAALPGME+ S+TK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180
Query: 181 QEDLVDVNLKSSNTNTSQSQPQSGGCAC 208
ED+VDVNLK + +N+SQ Q G C+C
Sbjct: 181 NEDMVDVNLKPT-SNSSQGDQQGGACSC 207
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 323 bits (827), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/205 (75%), Positives = 178/205 (86%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L+ Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 323 bits (827), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/205 (75%), Positives = 178/205 (86%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L+ Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 322 bits (826), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 153/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKSSNTNTSQSQP-QSGGCAC 208
+D+ L+ Q QP GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVNEGGCSC 208
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 322 bits (826), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 153/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKSSNTNTSQSQP-QSGGCAC 208
+D+ L+ Q QP GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVNEGGCSC 208
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 321 bits (823), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/205 (74%), Positives = 177/205 (86%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+ AV+VYD+ + SF TTKW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVSIEEGE KA+ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L+ Q QP S GGC+C
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1
SV=1
Length = 214
Score = 320 bits (821), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/214 (76%), Positives = 182/214 (85%), Gaps = 6/214 (2%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVL 119
QLWDTAGQERFRSLIPSYIRDSSVA++VYDV++RQ+FLNT+KW+E+V ERG S+VIIVL
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120
Query: 120 VGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLS-S 178
VGNKTDLV+KRQVSI EGE K +E VMFIETSAK FNIKALFRKIAAALPG+++ S +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180
Query: 179 TKQEDLVDVNLK----SSNTNTSQSQPQSGGCAC 208
TK +D+VDVNLK SS GGC+C
Sbjct: 181 TKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 310 bits (795), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 175/205 (85%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E +
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L + Q P S GGC+C
Sbjct: 189 IDIKL-----DKPQEPPASEGGCSC 208
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 310 bits (795), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 175/205 (85%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E +
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L + Q P S GGC+C
Sbjct: 189 IDIKL-----DKPQEPPASEGGCSC 208
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 310 bits (795), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/205 (70%), Positives = 175/205 (85%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQ++IEEGE +A+EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E +
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLKSSNTNTSQSQPQS-GGCAC 208
+D+ L + Q P S GGC+C
Sbjct: 189 IDIKL-----DKPQEPPASEGGCSC 208
>sp|Q9LV79|RAH1A_ARATH Ras-related protein RABH1a OS=Arabidopsis thaliana GN=RABH1A PE=2
SV=1
Length = 206
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/199 (75%), Positives = 167/199 (83%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YKLVFLGDQ VGKTSIIT FMY KFD +YQATIGIDFLSKT EDRT RLQLWDTAGQE
Sbjct: 8 YKLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRYEDRTFRLQLWDTAGQE 67
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RF+SL+PSYIRDSSVAVIVYDVAS+QSF+NT+KW+EEVR ERGS VIIVLVGNKTDLV+K
Sbjct: 68 RFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNKTDLVNK 127
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNL 189
RQVSIEEGE KARE +F+ETSAKAGFNIK LF KI +AL G E +S TKQEDLVDVNL
Sbjct: 128 RQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQEDLVDVNL 187
Query: 190 KSSNTNTSQSQPQSGGCAC 208
K ++ + Q C+C
Sbjct: 188 KPLMFSSQANHQQESNCSC 206
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 303 bits (776), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 142/179 (79%), Positives = 165/179 (92%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
+ +L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLW
Sbjct: 1 MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
DTAGQERFRSLIPSYIRDSSVA++VYD+ ++ SF NT KW+E+VR ERG++V+I+LVGNK
Sbjct: 61 DTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNK 120
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182
TDL DKRQVSIEEGEAKA+E ++MF ETSAKAGFNIKALFRK+A+ALPG+++ S TK +
Sbjct: 121 TDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQ 179
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/204 (72%), Positives = 167/204 (81%), Gaps = 5/204 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 66
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDSSVAV+VYD+ + SF TTKWV++VR ERG DVIIVLVGNKT
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKT 126
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVS E+GE KAR+LNVMFIETSAKAG+N+K LFRKIA ALPG+ + +Q ++
Sbjct: 127 DLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNI 186
Query: 185 VDVNLKSSNTNTSQSQPQSGGCAC 208
V +N + Q C C
Sbjct: 187 VIMNPPK-----DAEESQGRQCPC 205
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 300 bits (768), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 168/203 (82%), Gaps = 9/203 (4%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L K+KLVFLG+QSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERFRSLIPSYIRDSSVA+IVYD+ + SF+NT KW+E+VR ERG DVIIVLVGNKTD
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTD 127
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLV 185
L DKRQV+ EEGE KA+EL +M +ETSAKAG N+K LFRKIA LPGME + T+ ++
Sbjct: 128 LADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENV-ETQSTQMI 186
Query: 186 DVNLKSSNTNTSQSQPQSGGCAC 208
DV+++ + +S C C
Sbjct: 187 DVSIQPNENESS--------CNC 201
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 291 bits (745), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/169 (80%), Positives = 156/169 (92%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 6 NPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 65
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAV+VYD+ + SF T+KW+++VRTERGSDVII+LVGNKT
Sbjct: 66 TAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 125
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
DL DKRQV+ +EGE KA+ELNVMFIETSAKAG+N+K LFR+IA ALPG+
Sbjct: 126 DLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=1 SV=2
Length = 254
Score = 286 bits (732), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 136/204 (66%), Positives = 162/204 (79%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSV KTS+ITRF YD FDNTYQA IGIDFLSKTMYLED T+ L+LWD
Sbjct: 9 NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124
TAGQER RSLIP YIRDS+ AV+VYD+ + SF TTKW+++VRTERGSDVII LVGN+T
Sbjct: 69 TAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRT 128
Query: 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDL 184
DL DKRQVS+EEGE KA+ LNV FIET AKAG+N+K LFR++AAALPGME+ +ED+
Sbjct: 129 DLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSREDM 188
Query: 185 VDVNLKSSNTNTSQSQPQSGGCAC 208
D+ L+ T GGC+C
Sbjct: 189 SDIKLEKPQEQTV----SEGGCSC 208
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/213 (61%), Positives = 161/213 (75%), Gaps = 14/213 (6%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L KYK+VFLG+Q VGKTS+ITRFMYD FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDT
Sbjct: 7 SLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDT 66
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKT 124
AGQERFRSLIPSYIRDS VA+IVYD+ R+SF KW+E+V+ ERG + VI+ +VGNK+
Sbjct: 67 AGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKS 126
Query: 125 DLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQED 183
DL D+RQ+S EEGE KA+ L +F+ETS KAG+N+KALF+KIA +LP + ST
Sbjct: 127 DLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSESTP--- 183
Query: 184 LVDVNLKSSNTN--------TSQSQPQSGGCAC 208
L N S+N N T++ Q QS C C
Sbjct: 184 LDSENANSANQNKPGVIDISTAEEQEQS-ACQC 215
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 251 bits (640), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/186 (65%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L K KL+FLG+QSVGKTSII+RFMY+ F QAT+GIDFLSKTMYLED+ V+LQLWDT
Sbjct: 28 SLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDT 87
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERF SLIPSYIRDS++AV+VYD+ + SF T KWVE VR ERG DV+I+L+GNK D
Sbjct: 88 AGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKID 147
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLV 185
L +KRQV+ E+GE K+R LNVMFIETSAK G+N+K LFR++A+AL T S +E V
Sbjct: 148 LDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRT-SPPPKEGTV 206
Query: 186 DVNLKS 191
++ L+S
Sbjct: 207 EIELES 212
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 116/176 (65%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ ++++F WV+E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSST 179
DL KR V EE +A A + +++F+ETSAK N+ LF IA LP E S++
Sbjct: 135 ADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTS 190
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ ++++F WV+E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
DL +KR V EE +A A + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ ++++F WV+E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
DL +KR V EE +A A + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 114/171 (66%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A++VYD+ ++++F WV+E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
DL +KR V EE +A A + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 111/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IV+D+ ++ SF KWV+E++ + ++++ L GNK DL+D R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+VS EE E A+E ++ F+ETSAK N+K +F +IA LP
Sbjct: 132 KVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLP 172
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
+ KLV LGD VGK+ I+ RF+ +FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
Query: 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127
QER+ +L P Y R + VAVIVYD+ S +SF WV+E++ D+++ LVGNK DL
Sbjct: 93 QERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKADLH 152
Query: 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+KR+V E+G A + + FIETSAK NI LF +I LP
Sbjct: 153 EKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLP 196
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 114/173 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSST 179
KR V +E +A A + +++F+ETSAK N+ +F IA LP E ++T
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 114/173 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSST 179
KR V +E +A A + +++F+ETSAK N+ +F IA LP E ++T
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 113/168 (67%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +SF WV+E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
+KR V +E ++ A + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
KR V +E +A A + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 123/195 (63%), Gaps = 2/195 (1%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLV- 185
KR V +E +A A + +++F+ETSAK N+ +F IA LP E ++
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTR 198
Query: 186 DVNLKSSNTNTSQSQ 200
V+L+ SN S+SQ
Sbjct: 199 GVDLQESNP-ASRSQ 212
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
KR V +E +A A + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 12/206 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQER
Sbjct: 9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD-- 128
F SL P Y R++ A++VYDV QSF+ WV+E+ + D+II LVGNK D++
Sbjct: 69 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 128
Query: 129 -KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP-----GMETLSSTKQE 182
+R+V+ EEGE A E ++F ETSAK G N+ +F I +P + S+ ++
Sbjct: 129 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSASNERES 188
Query: 183 DLVDVNLKSSNTNTSQSQPQSGGCAC 208
+ V+L ++N TS + C+C
Sbjct: 189 NNQRVDLNAANDGTSANS----ACSC 210
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 111/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IV+DV ++ SF KWV+E++ + ++++ L GNK+DL+D R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 131
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+V+ E+ + A+E + F+ETSAK N+K +F +IA LP
Sbjct: 132 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 172
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 110/176 (62%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ +F ++TIG F S T+ + + TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IVYD+ S SF KWV+E++ + ++++ L GNK DL D+R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVD 186
+V+ EE A E + F+ETSAK N+ A+F +IA LP + + LVD
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVD 187
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A++VYD+ + +F+ WV+E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
KR V ++ + A + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 109/167 (65%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV LG+ +VGK+S++ RF+ F + ++TIG FL++T+ L D TV+ ++WDTAGQ
Sbjct: 9 QFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQ 68
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128
ER+ +L P Y R + A++VYD+ S SF KWV+E++ + +++I L GNK DL
Sbjct: 69 ERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAA 128
Query: 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMET 175
KR+V E + A E ++F+ETSAK N+ LF +IA LP T
Sbjct: 129 KRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPT 175
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD+ R SFL+ W+E+VR GS+++ +L+GNK+DL +
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAALPGME--TLSSTKQEDLVD 186
R+VS+ E ++ A +++ IETSAK N++ F ++A L L S K D +
Sbjct: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
Query: 187 VNLKSSNTNTSQSQPQSGGCAC 208
+N S+ + GC C
Sbjct: 199 LN--------SKDIGEGWGCGC 212
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD++ R +FL+ W+E+VR GS+++ +L+GNK+DL D
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADL 136
Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAALPGME--TLSSTKQEDLVD 186
R+V + E ++ A +++ IETSAK N++ F ++A L + S K D +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLKSSNTNTSQSQPQSGGCAC 208
++ S+ +S GC C
Sbjct: 197 LD--------SKDIAESWGCGC 210
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
RFR++ SY R ++ A++ YD++ R +FL+ W+E+VR GS+++ +L+GNK+DL D
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADF 136
Query: 130 RQVSIEEGEAKARELNVMF-IETSAKAGFNIKALFRKIAAALPGME--TLSSTKQEDLVD 186
R+V + E ++ A +++ IETSAK N++ F ++A L + S K D +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLKSSNTNTSQSQPQSGGCAC 208
++ S+ +S GC C
Sbjct: 197 LD--------SKDIAESWGCGC 210
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 106/169 (62%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A+ + K+ LGD VGK+SI+ RF+ D FD+ TIG F++KT+ + + +WDT
Sbjct: 2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERF SL P Y R S+ AVIVYD+ + SF KWV+E++ ++++ + GNK D
Sbjct: 62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
L D R+V +++ + A + + +ETSAK NI+ LF+ I+ +P ++
Sbjct: 122 LSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLD 170
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 104/161 (64%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ +F ++TIG F S T+ + + TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130
+ SL P Y R ++ A+IVYD+ S +S KWV+E++ + ++++ L GNK DL DKR
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKR 131
Query: 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171
+V+ EE A E + F+ETSAK N+ +F +IA LP
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLP 172
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 106/169 (62%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A+ + K+ LGD VGK+SI+ RF+ D FD+ TIG F++KT+ + + +WDT
Sbjct: 2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERF SL P Y R S+ AVIVYD+ + SF KWV+E++ ++++ + GNK D
Sbjct: 62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGME 174
L D R+V +++ + A + + +ETSAK NI+ LF+ I+ +P ++
Sbjct: 122 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 170
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
A+ + K+ LGD VGK+SI+ RF+ D FD+ TIG F++KT+ + + +WDT
Sbjct: 2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 61
Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125
AGQERF SL P Y R S+ AVIVYD+ + SF KWV+E++ ++++ + GNK D
Sbjct: 62 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCD 121
Query: 126 LVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
L D R+V +++ + A + + +ETSAK NI+ LF+ I+ +P +
Sbjct: 122 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 169
>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2
PE=2 SV=2
Length = 217
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 113/164 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK++I++RF + F ++TIG++F +K++ +E +T++ Q+WDTAGQE
Sbjct: 13 FKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQE 72
Query: 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129
R+R++ +Y R + A++VYD+ RQSF N +W+ E+R S ++I++VGNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHL 132
Query: 130 RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173
R VS +EG+A A + + F+ETSA N++ F+ I + G+
Sbjct: 133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGI 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,490,767
Number of Sequences: 539616
Number of extensions: 2389114
Number of successful extensions: 10031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 8107
Number of HSP's gapped (non-prelim): 1340
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)