Query 028466
Match_columns 208
No_of_seqs 132 out of 1778
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.7E-42 3.6E-47 241.0 21.2 200 7-208 20-221 (221)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.5E-42 3.3E-47 241.9 20.5 175 7-181 7-182 (205)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4.7E-41 1E-45 233.6 20.9 173 7-179 3-175 (200)
4 KOG0078 GTP-binding protein SE 100.0 4.2E-39 9.1E-44 227.8 21.6 168 5-172 8-175 (207)
5 KOG0098 GTPase Rab2, small G p 100.0 2.3E-39 5.1E-44 223.6 18.1 170 6-175 3-172 (216)
6 KOG0080 GTPase Rab18, small G 100.0 4.8E-39 1E-43 216.8 19.2 200 7-208 9-209 (209)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-36 2.8E-41 222.6 23.4 163 10-172 1-164 (202)
8 KOG0394 Ras-related GTPase [Ge 100.0 2.1E-37 4.6E-42 213.5 16.9 176 1-176 1-183 (210)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.8E-36 8.3E-41 221.1 22.2 173 10-182 1-179 (201)
10 cd04121 Rab40 Rab40 subfamily. 100.0 7.4E-36 1.6E-40 216.6 22.4 164 8-172 5-168 (189)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-36 3.1E-41 214.1 17.5 171 4-174 9-179 (222)
12 PLN03110 Rab GTPase; Provision 100.0 2.3E-35 5E-40 218.9 24.1 167 7-173 10-176 (216)
13 KOG0079 GTP-binding protein H- 100.0 4.7E-37 1E-41 204.5 12.8 184 8-192 7-190 (198)
14 cd04144 Ras2 Ras2 subfamily. 100.0 2E-35 4.3E-40 215.5 20.7 185 11-208 1-188 (190)
15 cd04110 Rab35 Rab35 subfamily. 100.0 7.6E-35 1.6E-39 213.8 23.1 169 8-177 5-173 (199)
16 cd04125 RabA_like RabA-like su 100.0 8.9E-35 1.9E-39 211.8 22.5 163 10-172 1-163 (188)
17 KOG0091 GTPase Rab39, small G 100.0 4.7E-36 1E-40 202.9 14.4 166 7-172 6-174 (213)
18 cd04112 Rab26 Rab26 subfamily. 100.0 1.1E-34 2.4E-39 211.7 22.0 167 10-176 1-168 (191)
19 cd04126 Rab20 Rab20 subfamily. 100.0 5.1E-35 1.1E-39 216.4 20.2 168 10-182 1-201 (220)
20 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-34 3.1E-39 206.6 21.9 163 9-171 2-164 (166)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.4E-34 7.4E-39 213.2 23.3 168 3-172 7-189 (232)
22 cd04109 Rab28 Rab28 subfamily. 100.0 3.4E-34 7.4E-39 212.7 23.1 164 10-173 1-168 (215)
23 cd04133 Rop_like Rop subfamily 100.0 1.7E-34 3.6E-39 207.4 20.7 160 10-171 2-173 (176)
24 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-33 2.6E-38 209.0 24.4 165 9-173 2-168 (211)
25 cd04117 Rab15 Rab15 subfamily. 100.0 6.6E-34 1.4E-38 202.2 21.9 160 10-169 1-160 (161)
26 cd01867 Rab8_Rab10_Rab13_like 100.0 6.1E-34 1.3E-38 203.6 21.6 164 8-171 2-165 (167)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.9E-34 1.1E-38 206.1 21.0 162 7-170 3-179 (182)
28 cd01865 Rab3 Rab3 subfamily. 100.0 7.7E-34 1.7E-38 202.7 21.7 162 10-171 2-163 (165)
29 PTZ00369 Ras-like protein; Pro 100.0 3.3E-34 7.2E-39 208.9 20.2 165 7-172 3-168 (189)
30 cd01875 RhoG RhoG subfamily. 100.0 7.5E-34 1.6E-38 207.2 22.0 163 7-171 1-177 (191)
31 KOG0093 GTPase Rab3, small G p 100.0 8.5E-35 1.8E-39 193.5 15.0 168 7-174 19-186 (193)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.1E-34 1.3E-38 204.4 20.4 164 8-172 1-165 (172)
33 KOG0086 GTPase Rab4, small G p 100.0 1.4E-34 3E-39 193.9 15.7 166 5-170 5-170 (214)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-33 2.8E-38 201.7 21.7 163 9-171 2-164 (166)
35 PLN03108 Rab family protein; P 100.0 2.4E-33 5.2E-38 207.3 23.6 167 7-173 4-170 (210)
36 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-33 2.6E-38 203.7 20.5 160 9-170 1-175 (178)
37 cd04119 RJL RJL (RabJ-Like) su 100.0 2E-33 4.4E-38 200.7 21.6 162 10-171 1-167 (168)
38 cd01864 Rab19 Rab19 subfamily. 100.0 3.3E-33 7.2E-38 199.4 22.0 162 8-169 2-164 (165)
39 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.4E-33 3.1E-38 204.0 20.4 166 10-176 1-171 (182)
40 cd04127 Rab27A Rab27a subfamil 100.0 1.8E-33 3.8E-38 203.5 20.6 164 8-171 3-177 (180)
41 PF00071 Ras: Ras family; Int 100.0 3.1E-33 6.7E-38 198.9 21.4 160 11-170 1-160 (162)
42 cd01868 Rab11_like Rab11-like. 100.0 4.8E-33 1E-37 198.5 22.3 163 8-170 2-164 (165)
43 cd04136 Rap_like Rap-like subf 100.0 3.3E-33 7.2E-38 198.8 20.3 161 9-170 1-162 (163)
44 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.9E-33 1.5E-37 205.2 22.6 162 9-172 1-177 (222)
45 cd04113 Rab4 Rab4 subfamily. 100.0 6.4E-33 1.4E-37 197.1 21.6 161 10-170 1-161 (161)
46 cd04118 Rab24 Rab24 subfamily. 100.0 9.5E-33 2.1E-37 201.9 23.1 164 10-174 1-169 (193)
47 PLN03118 Rab family protein; P 100.0 1.1E-32 2.4E-37 204.2 23.6 170 7-177 12-183 (211)
48 cd01866 Rab2 Rab2 subfamily. 100.0 8.6E-33 1.9E-37 197.8 21.9 163 9-171 4-166 (168)
49 PLN03071 GTP-binding nuclear p 100.0 6.5E-33 1.4E-37 206.1 21.6 164 7-173 11-174 (219)
50 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.1E-33 1.7E-37 198.2 21.3 163 11-173 2-167 (170)
51 cd04132 Rho4_like Rho4-like su 100.0 6.3E-33 1.4E-37 201.8 20.9 166 10-177 1-173 (187)
52 cd04175 Rap1 Rap1 subgroup. T 100.0 6.6E-33 1.4E-37 197.7 20.4 162 9-171 1-163 (164)
53 cd04106 Rab23_lke Rab23-like s 100.0 1.5E-32 3.3E-37 195.3 21.2 159 10-169 1-161 (162)
54 cd00877 Ran Ran (Ras-related n 100.0 1.5E-32 3.1E-37 196.2 21.0 162 10-174 1-162 (166)
55 KOG0095 GTPase Rab30, small G 100.0 6.5E-34 1.4E-38 189.9 13.0 163 8-170 6-168 (213)
56 cd01861 Rab6 Rab6 subfamily. 100.0 2.1E-32 4.6E-37 194.3 21.7 160 10-169 1-160 (161)
57 smart00175 RAB Rab subfamily o 100.0 2.8E-32 6E-37 194.2 21.6 162 10-171 1-162 (164)
58 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.2E-32 4.7E-37 196.9 20.9 159 9-169 1-173 (175)
59 cd04116 Rab9 Rab9 subfamily. 100.0 5.8E-32 1.3E-36 193.9 22.2 164 6-170 2-170 (170)
60 KOG0088 GTPase Rab21, small G 100.0 8E-34 1.7E-38 191.2 11.3 168 7-174 11-178 (218)
61 cd01860 Rab5_related Rab5-rela 100.0 7E-32 1.5E-36 192.0 22.1 162 9-170 1-162 (163)
62 cd04176 Rap2 Rap2 subgroup. T 100.0 3.9E-32 8.4E-37 193.5 20.6 161 9-170 1-162 (163)
63 KOG0097 GTPase Rab14, small G 100.0 2.6E-32 5.7E-37 180.9 17.6 206 3-208 5-215 (215)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7E-32 1.5E-36 193.5 21.3 163 8-170 1-168 (170)
65 cd04140 ARHI_like ARHI subfami 100.0 5.4E-32 1.2E-36 193.2 20.5 159 10-169 2-163 (165)
66 smart00173 RAS Ras subfamily o 100.0 5E-32 1.1E-36 193.0 20.1 161 10-171 1-162 (164)
67 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.1E-31 2.3E-36 191.2 21.1 161 9-170 2-163 (164)
68 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1E-31 2.2E-36 190.8 20.8 160 9-170 1-161 (162)
69 cd01871 Rac1_like Rac1-like su 100.0 9.6E-32 2.1E-36 193.3 20.7 158 10-169 2-173 (174)
70 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-31 2.7E-36 195.3 20.8 160 10-171 1-174 (189)
71 cd04124 RabL2 RabL2 subfamily. 100.0 1.7E-31 3.6E-36 189.9 20.8 159 10-172 1-159 (161)
72 KOG0081 GTPase Rab27, small G 100.0 6.1E-34 1.3E-38 191.9 7.6 170 7-176 7-186 (219)
73 cd04142 RRP22 RRP22 subfamily. 100.0 2.2E-31 4.8E-36 194.9 20.4 163 10-172 1-175 (198)
74 cd04123 Rab21 Rab21 subfamily. 100.0 5.4E-31 1.2E-35 187.0 21.7 161 10-170 1-161 (162)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.2E-31 1.1E-35 187.8 21.4 160 10-170 1-163 (164)
76 cd04143 Rhes_like Rhes_like su 100.0 8.4E-31 1.8E-35 197.5 22.7 161 10-171 1-171 (247)
77 smart00176 RAN Ran (Ras-relate 100.0 4.8E-31 1E-35 192.9 20.2 156 15-173 1-156 (200)
78 cd01863 Rab18 Rab18 subfamily. 100.0 1.7E-30 3.6E-35 184.6 21.5 160 10-170 1-161 (161)
79 cd01862 Rab7 Rab7 subfamily. 100.0 1.7E-30 3.8E-35 186.4 21.5 164 10-173 1-169 (172)
80 cd04114 Rab30 Rab30 subfamily. 100.0 3.3E-30 7.1E-35 184.5 22.8 163 8-170 6-168 (169)
81 cd00154 Rab Rab family. Rab G 100.0 2.1E-30 4.5E-35 183.0 20.7 159 10-168 1-159 (159)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 2.1E-30 4.5E-35 185.5 20.7 161 9-170 1-163 (168)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-30 2.8E-35 190.2 19.7 158 9-169 2-194 (195)
84 cd01892 Miro2 Miro2 subfamily. 100.0 8.2E-31 1.8E-35 187.7 18.3 162 8-171 3-166 (169)
85 cd04148 RGK RGK subfamily. Th 100.0 1.8E-30 3.9E-35 193.3 20.2 164 10-175 1-167 (221)
86 smart00174 RHO Rho (Ras homolo 100.0 2.1E-30 4.4E-35 186.5 19.9 158 12-171 1-172 (174)
87 cd04146 RERG_RasL11_like RERG/ 100.0 1.3E-30 2.9E-35 186.0 18.7 160 11-171 1-164 (165)
88 cd04103 Centaurin_gamma Centau 100.0 2.5E-30 5.5E-35 183.0 19.7 153 10-169 1-157 (158)
89 cd04135 Tc10 TC10 subfamily. 100.0 7.3E-30 1.6E-34 183.6 20.3 159 10-170 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.6E-30 1.7E-34 183.4 20.2 157 10-168 1-171 (173)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.8E-32 1E-36 177.8 7.3 173 14-186 2-175 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 2.7E-29 5.8E-34 178.7 20.4 161 10-171 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 3.1E-29 6.7E-34 177.7 20.0 159 11-170 1-160 (160)
94 cd04147 Ras_dva Ras-dva subfam 100.0 2.8E-29 6E-34 184.2 19.6 162 11-173 1-165 (198)
95 KOG0395 Ras-related GTPase [Ge 100.0 1.3E-29 2.9E-34 184.0 17.7 164 8-172 2-166 (196)
96 cd04137 RheB Rheb (Ras Homolog 100.0 7.2E-29 1.6E-33 179.4 20.8 162 10-172 2-164 (180)
97 PTZ00132 GTP-binding nuclear p 100.0 1.6E-28 3.5E-33 182.4 22.3 172 1-175 1-172 (215)
98 cd04149 Arf6 Arf6 subfamily. 100.0 2.1E-29 4.5E-34 180.2 16.9 155 7-168 7-167 (168)
99 cd01870 RhoA_like RhoA-like su 100.0 1.3E-28 2.8E-33 177.2 20.4 160 9-170 1-174 (175)
100 PLN00223 ADP-ribosylation fact 100.0 7.6E-29 1.6E-33 179.3 18.3 158 7-171 15-178 (181)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.6E-29 5.7E-34 182.1 15.9 163 8-173 2-172 (183)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8.8E-30 1.9E-34 181.5 12.8 152 12-168 2-163 (164)
103 smart00177 ARF ARF-like small 100.0 2E-29 4.3E-34 181.5 14.8 157 7-170 11-173 (175)
104 cd04129 Rho2 Rho2 subfamily. 100.0 2.4E-28 5.1E-33 177.8 20.5 160 9-170 1-172 (187)
105 cd04158 ARD1 ARD1 subfamily. 100.0 1E-28 2.2E-33 176.9 18.2 157 11-174 1-164 (169)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 5.2E-28 1.1E-32 176.8 20.5 148 10-157 1-176 (202)
107 cd00157 Rho Rho (Ras homology) 100.0 5E-28 1.1E-32 173.4 20.0 157 10-168 1-170 (171)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.3E-29 7.3E-34 177.6 13.7 152 10-168 1-158 (159)
109 cd04154 Arl2 Arl2 subfamily. 100.0 2.9E-28 6.3E-33 175.2 18.1 155 7-168 12-172 (173)
110 PTZ00133 ADP-ribosylation fact 100.0 4.6E-28 1E-32 175.4 17.7 158 7-171 15-178 (182)
111 PTZ00099 rab6; Provisional 100.0 1.4E-27 2.9E-32 171.6 19.3 145 32-176 3-147 (176)
112 cd01893 Miro1 Miro1 subfamily. 100.0 2.2E-27 4.8E-32 169.5 18.7 159 10-171 1-164 (166)
113 KOG4252 GTP-binding protein [S 100.0 4E-30 8.8E-35 176.8 3.5 173 3-176 14-186 (246)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.3E-27 7.1E-32 169.8 17.1 155 7-168 13-173 (174)
115 cd04157 Arl6 Arl6 subfamily. 100.0 2.2E-27 4.7E-32 168.6 14.9 152 11-168 1-161 (162)
116 cd00879 Sar1 Sar1 subfamily. 100.0 9.2E-27 2E-31 169.8 18.2 157 7-170 17-190 (190)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.8E-27 1.3E-31 167.4 16.0 153 11-168 1-166 (167)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.7E-27 7.9E-32 167.2 14.8 152 11-168 1-159 (160)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 7.5E-27 1.6E-31 166.8 16.4 152 11-168 1-166 (167)
120 KOG0393 Ras-related small GTPa 100.0 3.1E-27 6.7E-32 168.2 13.1 167 7-175 2-183 (198)
121 PF00025 Arf: ADP-ribosylation 99.9 5.8E-26 1.3E-30 163.3 18.7 157 7-170 12-175 (175)
122 PLN00023 GTP-binding protein; 99.9 3.4E-26 7.3E-31 175.2 18.3 141 6-146 18-189 (334)
123 cd04151 Arl1 Arl1 subfamily. 99.9 2.2E-26 4.7E-31 163.0 16.1 151 11-168 1-157 (158)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-26 3.4E-31 163.7 14.6 151 11-168 1-157 (158)
125 smart00178 SAR Sar1p-like memb 99.9 1.1E-25 2.3E-30 163.3 17.8 156 7-169 15-183 (184)
126 cd04159 Arl10_like Arl10-like 99.9 2E-25 4.3E-30 157.6 16.4 152 11-168 1-158 (159)
127 KOG0073 GTP-binding ADP-ribosy 99.9 3.2E-25 7E-30 150.5 16.0 161 7-172 14-179 (185)
128 cd01897 NOG NOG1 is a nucleola 99.9 3.4E-25 7.4E-30 158.3 16.3 156 10-170 1-167 (168)
129 cd01890 LepA LepA subfamily. 99.9 5.3E-25 1.1E-29 159.0 17.2 155 11-171 2-177 (179)
130 TIGR00231 small_GTP small GTP- 99.9 1.7E-24 3.7E-29 152.5 18.3 158 9-167 1-160 (161)
131 cd01898 Obg Obg subfamily. Th 99.9 7E-25 1.5E-29 157.0 16.0 158 11-170 2-170 (170)
132 PRK12299 obgE GTPase CgtA; Rev 99.9 7.9E-25 1.7E-29 171.1 17.5 162 10-172 159-329 (335)
133 cd01878 HflX HflX subfamily. 99.9 7.6E-25 1.6E-29 161.4 15.8 157 7-170 39-204 (204)
134 KOG3883 Ras family small GTPas 99.9 3.5E-24 7.6E-29 143.9 17.2 174 8-182 8-186 (198)
135 cd04155 Arl3 Arl3 subfamily. 99.9 2.8E-24 6E-29 154.4 18.1 155 7-168 12-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 1.2E-24 2.6E-29 154.7 16.0 155 10-168 1-163 (164)
137 COG1100 GTPase SAR1 and relate 99.9 2E-23 4.2E-28 155.5 18.6 167 7-173 3-187 (219)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.6E-24 1.7E-28 151.3 15.3 157 11-171 2-166 (168)
139 TIGR02528 EutP ethanolamine ut 99.9 3E-24 6.5E-29 149.4 12.7 134 11-167 2-141 (142)
140 KOG0070 GTP-binding ADP-ribosy 99.9 2.6E-24 5.6E-29 149.7 12.1 160 6-172 14-179 (181)
141 PF02421 FeoB_N: Ferrous iron 99.9 3.3E-24 7.2E-29 149.1 12.5 148 10-166 1-156 (156)
142 cd00882 Ras_like_GTPase Ras-li 99.9 3.5E-23 7.7E-28 144.5 17.5 153 14-167 1-156 (157)
143 cd01879 FeoB Ferrous iron tran 99.9 2E-23 4.4E-28 147.5 16.2 148 14-170 1-156 (158)
144 PRK04213 GTP-binding protein; 99.9 7E-24 1.5E-28 155.9 12.6 155 5-172 5-193 (201)
145 TIGR03156 GTP_HflX GTP-binding 99.9 4.1E-23 8.9E-28 162.7 17.6 153 9-169 189-350 (351)
146 TIGR02729 Obg_CgtA Obg family 99.9 5.9E-23 1.3E-27 160.5 17.3 159 10-170 158-328 (329)
147 PRK15494 era GTPase Era; Provi 99.9 1.1E-22 2.4E-27 160.0 18.5 163 7-179 50-224 (339)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 3E-23 6.6E-28 151.7 14.3 146 10-159 3-170 (194)
149 cd01881 Obg_like The Obg-like 99.9 3.1E-23 6.8E-28 149.1 13.8 156 14-170 1-176 (176)
150 TIGR00436 era GTP-binding prot 99.9 9.6E-23 2.1E-27 156.2 17.1 159 11-177 2-170 (270)
151 cd01889 SelB_euk SelB subfamil 99.9 5.5E-23 1.2E-27 150.1 14.1 158 10-171 1-186 (192)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.7E-22 5.8E-27 141.5 16.2 146 10-170 2-156 (157)
153 PRK03003 GTP-binding protein D 99.9 1.7E-22 3.7E-27 165.7 17.2 176 9-195 38-224 (472)
154 PF08477 Miro: Miro-like prote 99.9 1.3E-22 2.9E-27 136.9 13.2 114 11-125 1-119 (119)
155 KOG1673 Ras GTPases [General f 99.9 6.5E-23 1.4E-27 138.2 10.9 171 7-178 18-193 (205)
156 TIGR00487 IF-2 translation ini 99.9 4.3E-22 9.4E-27 165.7 17.7 154 7-168 85-247 (587)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.9E-22 1.1E-26 160.8 17.3 152 8-173 202-362 (442)
158 PRK05291 trmE tRNA modificatio 99.9 2.4E-22 5.2E-27 163.4 15.5 149 8-172 214-371 (449)
159 cd00881 GTP_translation_factor 99.9 4.5E-22 9.9E-27 144.6 15.1 155 11-171 1-187 (189)
160 PRK03003 GTP-binding protein D 99.9 1.3E-22 2.7E-27 166.5 13.5 169 8-182 210-393 (472)
161 PRK15467 ethanolamine utilizat 99.9 3.1E-22 6.8E-27 141.5 13.7 147 11-179 3-155 (158)
162 KOG0075 GTP-binding ADP-ribosy 99.9 2.7E-23 5.7E-28 138.7 7.5 153 9-170 20-181 (186)
163 cd01888 eIF2_gamma eIF2-gamma 99.9 5.8E-22 1.3E-26 145.8 14.8 161 10-172 1-200 (203)
164 cd01894 EngA1 EngA1 subfamily. 99.9 8.4E-22 1.8E-26 139.0 14.4 147 13-170 1-157 (157)
165 TIGR01393 lepA GTP-binding pro 99.9 1.3E-21 2.8E-26 163.5 17.8 158 10-173 4-182 (595)
166 PRK12297 obgE GTPase CgtA; Rev 99.9 2.6E-21 5.7E-26 155.0 18.8 160 11-175 160-331 (424)
167 PRK11058 GTPase HflX; Provisio 99.9 9.8E-22 2.1E-26 158.2 16.1 156 10-171 198-362 (426)
168 PRK12296 obgE GTPase CgtA; Rev 99.9 2E-21 4.3E-26 157.6 17.1 164 10-176 160-345 (500)
169 PRK00454 engB GTP-binding prot 99.9 2.1E-21 4.6E-26 142.1 15.4 160 6-172 21-195 (196)
170 COG1160 Predicted GTPases [Gen 99.9 1.4E-21 3E-26 153.8 14.8 177 10-197 4-193 (444)
171 TIGR00475 selB selenocysteine- 99.9 2.1E-21 4.5E-26 162.2 16.8 157 10-175 1-170 (581)
172 PRK00093 GTP-binding protein D 99.9 2E-21 4.3E-26 158.5 16.4 173 10-195 2-186 (435)
173 PRK05306 infB translation init 99.9 2.9E-21 6.3E-26 164.4 17.8 154 7-169 288-450 (787)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 4.2E-21 9.1E-26 153.0 17.7 163 11-175 161-337 (390)
175 cd01895 EngA2 EngA2 subfamily. 99.9 6.3E-21 1.4E-25 136.5 16.9 155 9-169 2-173 (174)
176 CHL00189 infB translation init 99.9 3.3E-21 7.2E-26 162.8 16.9 157 7-170 242-409 (742)
177 KOG0071 GTP-binding ADP-ribosy 99.9 6E-21 1.3E-25 126.6 14.3 158 7-171 15-178 (180)
178 PF00009 GTP_EFTU: Elongation 99.9 1.8E-21 3.8E-26 141.7 12.9 160 8-171 2-187 (188)
179 TIGR03594 GTPase_EngA ribosome 99.9 6.9E-21 1.5E-25 155.2 17.6 165 8-179 171-352 (429)
180 PRK00089 era GTPase Era; Revie 99.9 9.8E-21 2.1E-25 146.8 17.4 163 7-176 3-176 (292)
181 cd04105 SR_beta Signal recogni 99.9 1.5E-20 3.2E-25 138.2 16.9 117 11-128 2-123 (203)
182 COG1159 Era GTPase [General fu 99.9 5.3E-21 1.2E-25 143.1 14.6 168 6-181 3-182 (298)
183 cd04163 Era Era subfamily. Er 99.9 1.4E-20 3E-25 133.8 16.3 156 8-170 2-168 (168)
184 TIGR03594 GTPase_EngA ribosome 99.9 7.5E-21 1.6E-25 154.9 16.7 153 11-174 1-163 (429)
185 PRK05433 GTP-binding protein L 99.9 1.3E-20 2.8E-25 157.6 18.2 159 9-173 7-186 (600)
186 TIGR03598 GTPase_YsxC ribosome 99.9 1.2E-20 2.5E-25 136.4 14.2 148 6-160 15-179 (179)
187 PRK09554 feoB ferrous iron tra 99.9 4.5E-20 9.7E-25 157.8 19.0 155 7-170 1-167 (772)
188 TIGR00437 feoB ferrous iron tr 99.9 1.8E-20 3.9E-25 156.7 16.2 146 16-170 1-154 (591)
189 PRK09518 bifunctional cytidyla 99.9 3.4E-20 7.4E-25 158.7 18.1 154 8-173 274-438 (712)
190 PRK12317 elongation factor 1-a 99.9 1.5E-20 3.1E-25 152.8 14.3 156 5-163 2-197 (425)
191 cd00880 Era_like Era (E. coli 99.9 3.1E-20 6.7E-25 130.8 13.6 152 14-170 1-163 (163)
192 TIGR00483 EF-1_alpha translati 99.8 4.5E-20 9.8E-25 149.9 14.6 153 6-162 4-198 (426)
193 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.8E-20 4E-25 130.5 10.1 172 2-176 3-174 (216)
194 PRK00093 GTP-binding protein D 99.8 2.2E-19 4.7E-24 146.6 17.6 161 8-176 172-349 (435)
195 PRK09518 bifunctional cytidyla 99.8 1.1E-19 2.4E-24 155.7 16.4 165 8-180 449-630 (712)
196 KOG0076 GTP-binding ADP-ribosy 99.8 2.6E-20 5.5E-25 128.0 9.6 162 6-173 14-189 (197)
197 TIGR03680 eif2g_arch translati 99.8 1.4E-19 3E-24 145.9 15.2 163 7-171 2-196 (406)
198 COG2229 Predicted GTPase [Gene 99.8 5.1E-19 1.1E-23 123.2 15.8 158 4-169 5-176 (187)
199 TIGR00491 aIF-2 translation in 99.8 2.6E-19 5.6E-24 149.0 16.5 156 8-170 3-215 (590)
200 COG0486 ThdF Predicted GTPase 99.8 2.9E-19 6.2E-24 141.2 15.5 154 8-173 216-378 (454)
201 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.7E-19 3.7E-24 133.2 13.2 148 11-163 1-186 (208)
202 cd01896 DRG The developmentall 99.8 1.2E-18 2.7E-23 130.5 17.8 152 11-171 2-226 (233)
203 KOG0074 GTP-binding ADP-ribosy 99.8 9.5E-20 2.1E-24 121.1 9.9 160 7-170 15-178 (185)
204 PRK04000 translation initiatio 99.8 4.8E-19 1E-23 142.8 15.9 165 6-172 6-202 (411)
205 PRK10512 selenocysteinyl-tRNA- 99.8 6.1E-19 1.3E-23 147.9 16.9 158 11-173 2-168 (614)
206 cd01884 EF_Tu EF-Tu subfamily. 99.8 8.3E-19 1.8E-23 127.8 15.2 145 9-159 2-171 (195)
207 TIGR01394 TypA_BipA GTP-bindin 99.8 3.7E-19 8E-24 148.6 14.8 157 11-173 3-193 (594)
208 PF10662 PduV-EutP: Ethanolami 99.8 6E-19 1.3E-23 120.2 12.7 135 11-167 3-142 (143)
209 COG1160 Predicted GTPases [Gen 99.8 1.3E-18 2.9E-23 137.1 15.8 169 8-182 177-362 (444)
210 PRK04004 translation initiatio 99.8 1.6E-18 3.6E-23 144.6 17.3 156 7-169 4-216 (586)
211 PRK10218 GTP-binding protein; 99.8 2E-18 4.3E-23 144.1 17.6 161 9-173 5-197 (607)
212 KOG4423 GTP-binding protein-li 99.8 1.6E-21 3.4E-26 135.3 -1.2 168 7-174 23-197 (229)
213 cd01883 EF1_alpha Eukaryotic e 99.8 4.8E-19 1E-23 131.8 12.0 146 11-160 1-194 (219)
214 cd01876 YihA_EngB The YihA (En 99.8 2.1E-18 4.5E-23 122.8 14.5 151 11-170 1-170 (170)
215 cd04168 TetM_like Tet(M)-like 99.8 6.6E-18 1.4E-22 126.7 17.1 111 11-127 1-129 (237)
216 KOG0072 GTP-binding ADP-ribosy 99.8 1.7E-19 3.6E-24 120.2 7.0 160 8-172 17-180 (182)
217 COG0370 FeoB Fe2+ transport sy 99.8 8.3E-18 1.8E-22 138.2 15.9 159 7-174 1-167 (653)
218 cd04167 Snu114p Snu114p subfam 99.8 4.8E-18 1E-22 126.0 13.0 113 11-127 2-136 (213)
219 PRK12736 elongation factor Tu; 99.8 1.4E-17 3.1E-22 133.8 16.2 159 7-171 10-201 (394)
220 TIGR00485 EF-Tu translation el 99.8 1.4E-17 3E-22 134.0 16.1 146 6-157 9-179 (394)
221 COG0218 Predicted GTPase [Gene 99.8 1.5E-17 3.4E-22 118.3 13.9 159 7-172 22-198 (200)
222 PRK12735 elongation factor Tu; 99.8 2.4E-17 5.3E-22 132.6 16.2 159 7-171 10-203 (396)
223 COG0532 InfB Translation initi 99.8 2.6E-17 5.7E-22 131.9 15.9 160 7-173 3-172 (509)
224 KOG1707 Predicted Ras related/ 99.8 5.1E-18 1.1E-22 136.5 10.8 168 1-170 1-174 (625)
225 CHL00071 tufA elongation facto 99.8 3.3E-17 7.3E-22 132.3 15.6 146 7-158 10-180 (409)
226 TIGR02034 CysN sulfate adenyly 99.8 1.1E-17 2.3E-22 134.9 12.7 147 10-161 1-187 (406)
227 cd04165 GTPBP1_like GTPBP1-lik 99.8 2E-17 4.3E-22 123.1 12.9 155 11-169 1-221 (224)
228 COG2262 HflX GTPases [General 99.8 6.3E-17 1.4E-21 126.0 15.8 158 9-173 192-358 (411)
229 KOG1489 Predicted GTP-binding 99.8 4.6E-17 9.9E-22 122.5 14.5 155 11-169 198-365 (366)
230 COG1084 Predicted GTPase [Gene 99.8 6.8E-17 1.5E-21 122.4 15.0 159 6-170 165-335 (346)
231 PRK05124 cysN sulfate adenylyl 99.8 2.5E-17 5.5E-22 134.8 13.8 151 7-162 25-216 (474)
232 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.3E-17 7.2E-22 121.4 13.0 158 11-171 1-176 (232)
233 PLN00043 elongation factor 1-a 99.7 3.1E-17 6.7E-22 133.3 13.9 149 7-161 5-203 (447)
234 KOG1423 Ras-like GTPase ERA [C 99.7 1.3E-16 2.8E-21 119.6 15.4 165 6-174 69-274 (379)
235 PTZ00327 eukaryotic translatio 99.7 7.4E-17 1.6E-21 130.9 14.8 167 5-173 30-235 (460)
236 COG5256 TEF1 Translation elong 99.7 4.6E-17 1E-21 126.7 12.7 154 7-163 5-203 (428)
237 PTZ00141 elongation factor 1- 99.7 9.2E-17 2E-21 130.6 14.8 151 6-161 4-203 (446)
238 KOG1145 Mitochondrial translat 99.7 1E-16 2.2E-21 128.2 14.5 158 7-172 151-317 (683)
239 cd01885 EF2 EF2 (for archaea a 99.7 8E-17 1.7E-21 119.4 12.5 113 11-127 2-138 (222)
240 cd04104 p47_IIGP_like p47 (47- 99.7 1.2E-16 2.6E-21 117.0 12.9 156 9-172 1-185 (197)
241 PLN03126 Elongation factor Tu; 99.7 3.4E-16 7.4E-21 127.8 16.7 145 7-157 79-248 (478)
242 PRK00049 elongation factor Tu; 99.7 4E-16 8.7E-21 125.5 16.6 159 7-171 10-203 (396)
243 cd01850 CDC_Septin CDC/Septin. 99.7 1.5E-16 3.3E-21 121.8 13.0 143 9-156 4-187 (276)
244 PRK05506 bifunctional sulfate 99.7 9.7E-17 2.1E-21 136.1 13.1 151 6-161 21-211 (632)
245 KOG0462 Elongation factor-type 99.7 2.2E-16 4.7E-21 126.4 14.1 168 8-179 59-243 (650)
246 cd04169 RF3 RF3 subfamily. Pe 99.7 4.9E-16 1.1E-20 118.5 15.4 116 10-129 3-138 (267)
247 PLN03127 Elongation factor Tu; 99.7 6.6E-16 1.4E-20 125.5 16.5 159 7-171 59-252 (447)
248 cd01886 EF-G Elongation factor 99.7 4E-16 8.6E-21 119.1 14.3 112 11-128 1-130 (270)
249 cd04170 EF-G_bact Elongation f 99.7 1.5E-16 3.2E-21 122.0 9.9 152 11-171 1-173 (268)
250 PRK00741 prfC peptide chain re 99.7 1.1E-15 2.3E-20 126.4 15.4 117 7-127 8-144 (526)
251 cd01899 Ygr210 Ygr210 subfamil 99.7 1.4E-15 3.1E-20 118.2 15.2 162 12-177 1-275 (318)
252 COG0481 LepA Membrane GTPase L 99.7 1.6E-15 3.5E-20 119.8 14.4 163 7-176 7-191 (603)
253 KOG0077 Vesicle coat complex C 99.7 2.7E-16 5.9E-21 107.5 8.7 156 8-170 19-192 (193)
254 PRK13351 elongation factor G; 99.7 1.2E-15 2.7E-20 130.7 14.8 116 7-128 6-139 (687)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 2.2E-15 4.8E-20 101.1 13.0 106 11-123 1-116 (116)
256 PF09439 SRPRB: Signal recogni 99.7 1.6E-16 3.4E-21 113.1 7.5 118 8-129 2-127 (181)
257 COG1163 DRG Predicted GTPase [ 99.7 6.3E-15 1.4E-19 111.5 15.9 154 8-170 62-288 (365)
258 COG0536 Obg Predicted GTPase [ 99.7 1.4E-15 3.1E-20 115.8 12.3 163 11-174 161-336 (369)
259 TIGR00503 prfC peptide chain r 99.7 4.2E-15 9.1E-20 122.9 15.4 116 7-127 9-145 (527)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.8E-15 2.1E-19 106.9 14.7 159 10-172 1-185 (196)
261 PRK12739 elongation factor G; 99.6 1.4E-14 3.1E-19 124.1 17.7 118 5-128 4-139 (691)
262 KOG1191 Mitochondrial GTPase [ 99.6 1.8E-15 4E-20 119.9 10.5 166 8-175 267-454 (531)
263 TIGR00484 EF-G translation elo 99.6 5.5E-15 1.2E-19 126.6 14.3 122 2-129 3-142 (689)
264 COG2895 CysN GTPases - Sulfate 99.6 8.6E-15 1.9E-19 111.8 12.0 149 7-160 4-192 (431)
265 PRK09866 hypothetical protein; 99.6 3.7E-14 8.1E-19 116.9 16.2 109 59-169 231-351 (741)
266 PRK00007 elongation factor G; 99.6 1E-13 2.2E-18 118.8 17.9 116 6-127 7-140 (693)
267 PRK09602 translation-associate 99.6 1.2E-13 2.6E-18 110.6 16.8 166 10-179 2-279 (396)
268 COG3596 Predicted GTPase [Gene 99.6 1.4E-14 3.1E-19 107.5 10.5 161 7-171 37-222 (296)
269 COG4917 EutP Ethanolamine util 99.6 1.4E-14 3.1E-19 94.6 9.0 137 11-169 3-144 (148)
270 KOG0090 Signal recognition par 99.6 4.5E-14 9.7E-19 100.8 12.0 156 9-170 38-238 (238)
271 COG1217 TypA Predicted membran 99.6 2.8E-14 6.1E-19 112.5 11.7 161 10-174 6-198 (603)
272 PRK12740 elongation factor G; 99.6 8.6E-14 1.9E-18 119.2 14.2 107 15-127 1-125 (668)
273 PRK14845 translation initiatio 99.5 2E-13 4.2E-18 119.5 15.5 145 20-171 472-673 (1049)
274 KOG0458 Elongation factor 1 al 99.5 1.1E-13 2.4E-18 111.9 10.9 151 8-162 176-373 (603)
275 KOG3905 Dynein light intermedi 99.5 7.7E-13 1.7E-17 100.3 14.4 171 8-181 51-300 (473)
276 TIGR00490 aEF-2 translation el 99.5 1.9E-13 4.1E-18 117.6 10.4 116 8-127 18-151 (720)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2E-12 4.4E-17 99.2 14.7 121 5-128 34-167 (313)
278 KOG1490 GTP-binding protein CR 99.5 3.7E-13 8E-18 107.2 10.3 164 6-172 165-342 (620)
279 COG5257 GCD11 Translation init 99.5 4.1E-13 8.8E-18 101.6 9.9 171 7-179 8-210 (415)
280 cd01853 Toc34_like Toc34-like 99.5 2.8E-12 6.1E-17 96.8 14.0 119 7-128 29-163 (249)
281 PF05783 DLIC: Dynein light in 99.5 5E-12 1.1E-16 102.8 15.9 170 7-179 23-272 (472)
282 cd00066 G-alpha G protein alph 99.5 2.4E-12 5.3E-17 100.7 13.6 116 57-172 160-312 (317)
283 PRK13768 GTPase; Provisional 99.5 1.1E-12 2.4E-17 99.5 11.3 114 59-172 98-248 (253)
284 PF04548 AIG1: AIG1 family; I 99.5 1E-12 2.2E-17 97.3 10.9 161 10-174 1-189 (212)
285 PRK07560 elongation factor EF- 99.4 1.8E-12 3.9E-17 111.8 13.5 116 8-127 19-152 (731)
286 TIGR00101 ureG urease accessor 99.4 6.5E-12 1.4E-16 91.9 14.5 103 58-171 92-196 (199)
287 PF05049 IIGP: Interferon-indu 99.4 2.1E-12 4.6E-17 101.5 12.3 159 8-173 34-220 (376)
288 PTZ00258 GTP-binding protein; 99.4 4.6E-12 1E-16 100.6 13.7 85 8-92 20-126 (390)
289 KOG0461 Selenocysteine-specifi 99.4 8.5E-12 1.8E-16 95.5 14.1 162 7-173 5-195 (522)
290 PLN00116 translation elongatio 99.4 1.2E-12 2.6E-17 114.3 10.9 117 7-127 17-163 (843)
291 PTZ00416 elongation factor 2; 99.4 1.4E-12 3E-17 113.7 11.0 116 8-127 18-157 (836)
292 smart00275 G_alpha G protein a 99.4 1.4E-11 3E-16 97.2 14.7 114 58-171 184-334 (342)
293 smart00010 small_GTPase Small 99.4 5.7E-12 1.2E-16 85.2 10.9 114 10-160 1-115 (124)
294 TIGR00157 ribosome small subun 99.4 1.9E-12 4E-17 97.8 9.2 99 69-171 24-123 (245)
295 KOG1707 Predicted Ras related/ 99.4 1.4E-11 3E-16 99.9 13.9 163 5-172 421-584 (625)
296 PRK09435 membrane ATPase/prote 99.4 7.3E-12 1.6E-16 97.8 11.7 104 57-171 148-260 (332)
297 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.5E-11 3.2E-16 91.9 12.8 139 7-157 37-182 (225)
298 PRK09601 GTP-binding protein Y 99.4 5.4E-11 1.2E-15 93.6 15.5 83 10-92 3-107 (364)
299 KOG3886 GTP-binding protein [S 99.4 2.5E-12 5.5E-17 93.1 7.0 149 9-159 4-167 (295)
300 TIGR00073 hypB hydrogenase acc 99.3 2.1E-11 4.5E-16 90.0 12.0 152 8-170 21-206 (207)
301 KOG1144 Translation initiation 99.3 1E-11 2.3E-16 103.0 10.9 161 6-170 472-686 (1064)
302 COG0480 FusA Translation elong 99.3 2.7E-11 5.8E-16 102.7 12.0 118 6-129 7-143 (697)
303 PF03029 ATP_bind_1: Conserved 99.3 1.7E-12 3.6E-17 97.4 3.9 112 59-170 92-236 (238)
304 PF00350 Dynamin_N: Dynamin fa 99.3 3.1E-11 6.7E-16 86.1 9.7 63 59-124 102-168 (168)
305 COG0050 TufB GTPases - transla 99.3 2.9E-11 6.4E-16 90.7 9.7 158 8-171 11-201 (394)
306 PF00735 Septin: Septin; Inte 99.3 5.5E-11 1.2E-15 91.3 11.4 143 9-156 4-186 (281)
307 KOG1532 GTPase XAB1, interacts 99.3 4.3E-11 9.4E-16 89.0 10.0 116 58-173 116-266 (366)
308 TIGR02836 spore_IV_A stage IV 99.3 3.3E-10 7E-15 89.6 14.8 158 9-171 17-237 (492)
309 COG3276 SelB Selenocysteine-sp 99.3 5.8E-11 1.3E-15 93.7 10.6 155 11-171 2-162 (447)
310 COG0378 HypB Ni2+-binding GTPa 99.2 9.9E-12 2.2E-16 88.2 3.7 53 118-170 146-200 (202)
311 TIGR00750 lao LAO/AO transport 99.2 1.8E-10 3.9E-15 89.7 11.1 104 57-171 126-238 (300)
312 KOG0410 Predicted GTP binding 99.2 2.9E-11 6.3E-16 91.8 6.3 151 9-171 178-341 (410)
313 KOG0082 G-protein alpha subuni 99.2 1E-09 2.3E-14 85.5 14.7 122 48-171 187-344 (354)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 5.3E-10 1.1E-14 93.1 12.8 119 8-128 117-250 (763)
315 smart00053 DYNc Dynamin, GTPas 99.2 6.4E-10 1.4E-14 83.2 11.0 68 58-128 125-206 (240)
316 COG4108 PrfC Peptide chain rel 99.1 5.6E-10 1.2E-14 88.1 10.7 137 7-149 10-166 (528)
317 COG0012 Predicted GTPase, prob 99.1 2E-09 4.4E-14 83.9 13.5 84 10-93 3-109 (372)
318 PRK10463 hydrogenase nickel in 99.1 8.2E-10 1.8E-14 84.3 10.1 55 115-169 231-287 (290)
319 PF03308 ArgK: ArgK protein; 99.1 1.4E-10 3E-15 86.4 5.4 101 58-170 122-229 (266)
320 cd01900 YchF YchF subfamily. 99.1 2.8E-10 6.1E-15 86.8 7.3 81 12-92 1-103 (274)
321 KOG1547 Septin CDC10 and relat 99.1 1.2E-09 2.5E-14 80.0 9.8 155 8-167 45-239 (336)
322 KOG0468 U5 snRNP-specific prot 99.1 1.3E-09 2.7E-14 90.0 10.7 117 7-127 126-262 (971)
323 cd01855 YqeH YqeH. YqeH is an 99.1 8.1E-10 1.8E-14 80.5 8.7 95 70-171 23-125 (190)
324 COG1703 ArgK Putative periplas 99.1 2.3E-09 4.9E-14 81.1 10.7 103 57-171 143-254 (323)
325 KOG0460 Mitochondrial translat 99.0 1.5E-09 3.2E-14 83.2 8.8 144 8-154 53-218 (449)
326 KOG3887 Predicted small GTPase 99.0 2E-09 4.4E-14 78.8 9.1 165 10-176 28-208 (347)
327 KOG0705 GTPase-activating prot 99.0 9.2E-10 2E-14 88.9 7.9 159 7-172 28-190 (749)
328 KOG1486 GTP-binding protein DR 99.0 1.9E-08 4E-13 74.3 13.8 158 8-167 61-233 (364)
329 KOG1954 Endocytosis/signaling 99.0 2.8E-09 6.1E-14 82.6 8.8 121 8-131 57-228 (532)
330 COG5019 CDC3 Septin family pro 99.0 5.3E-09 1.1E-13 81.2 10.2 138 8-150 22-200 (373)
331 PF00503 G-alpha: G-protein al 99.0 2E-08 4.3E-13 81.1 13.5 113 58-170 236-389 (389)
332 cd01859 MJ1464 MJ1464. This f 99.0 2.7E-09 5.8E-14 75.2 7.2 96 71-172 2-97 (156)
333 PRK12289 GTPase RsgA; Reviewed 98.9 7.2E-09 1.6E-13 82.0 8.6 94 72-170 80-174 (352)
334 KOG2655 Septin family protein 98.9 2.6E-08 5.6E-13 77.9 11.1 143 9-156 21-202 (366)
335 COG5258 GTPBP1 GTPase [General 98.9 3.2E-08 6.9E-13 77.2 11.2 162 5-170 113-338 (527)
336 COG5192 BMS1 GTP-binding prote 98.9 3.6E-08 7.8E-13 80.5 11.0 139 2-155 62-210 (1077)
337 PRK12288 GTPase RsgA; Reviewed 98.8 1.9E-08 4.1E-13 79.6 9.0 89 79-170 118-207 (347)
338 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.9E-08 4.2E-13 77.8 8.7 87 78-169 75-162 (287)
339 KOG0466 Translation initiation 98.8 6.9E-09 1.5E-13 78.6 5.6 184 7-197 36-266 (466)
340 PRK00098 GTPase RsgA; Reviewed 98.8 1.8E-08 3.9E-13 78.4 7.7 88 79-170 78-166 (298)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.5E-13 70.7 6.0 53 11-68 85-138 (141)
342 KOG1143 Predicted translation 98.8 2.2E-08 4.9E-13 77.8 7.3 164 8-175 166-392 (591)
343 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.7E-08 5.8E-13 70.2 6.7 56 8-68 101-157 (157)
344 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.3E-13 70.0 6.7 90 77-171 4-95 (157)
345 KOG2486 Predicted GTPase [Gene 98.8 1.5E-08 3.2E-13 75.8 5.2 157 6-169 133-314 (320)
346 cd04178 Nucleostemin_like Nucl 98.7 3.1E-08 6.6E-13 70.8 6.5 55 9-68 117-172 (172)
347 TIGR03597 GTPase_YqeH ribosome 98.7 6.8E-08 1.5E-12 77.1 8.8 95 68-169 50-151 (360)
348 KOG0464 Elongation factor G [T 98.7 1.2E-08 2.6E-13 80.4 3.6 147 8-160 36-200 (753)
349 KOG0448 Mitofusin 1 GTPase, in 98.7 4.8E-07 1.1E-11 75.3 12.3 93 59-155 207-310 (749)
350 TIGR00092 GTP-binding protein 98.7 1.2E-07 2.5E-12 75.1 8.2 83 10-92 3-108 (368)
351 KOG0465 Mitochondrial elongati 98.7 6.3E-08 1.4E-12 79.5 6.6 119 8-130 38-172 (721)
352 cd01856 YlqF YlqF. Proteins o 98.7 8.6E-08 1.9E-12 68.6 6.7 56 8-68 114-170 (171)
353 cd01856 YlqF YlqF. Proteins o 98.6 8.6E-08 1.9E-12 68.6 6.6 94 70-171 8-101 (171)
354 KOG1491 Predicted GTP-binding 98.6 9E-08 1.9E-12 73.6 6.3 86 8-93 19-126 (391)
355 cd01855 YqeH YqeH. YqeH is an 98.6 6.2E-08 1.3E-12 70.6 5.1 55 9-68 127-190 (190)
356 KOG0467 Translation elongation 98.6 2.3E-07 5E-12 77.9 8.5 117 4-126 4-136 (887)
357 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.8E-07 4E-12 72.4 7.5 57 8-69 120-177 (287)
358 TIGR03596 GTPase_YlqF ribosome 98.6 1.6E-07 3.5E-12 72.4 7.0 56 8-68 117-173 (276)
359 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.1E-07 4.5E-12 64.5 6.5 78 75-158 5-84 (141)
360 cd01849 YlqF_related_GTPase Yl 98.6 3.9E-07 8.4E-12 64.2 8.0 84 83-170 1-84 (155)
361 cd01859 MJ1464 MJ1464. This f 98.6 2.6E-07 5.7E-12 65.0 6.8 57 8-68 100-156 (156)
362 cd01851 GBP Guanylate-binding 98.6 1.5E-06 3.3E-11 64.8 11.1 85 8-93 6-103 (224)
363 COG1161 Predicted GTPases [Gen 98.5 2E-07 4.3E-12 73.2 6.1 58 8-70 131-189 (322)
364 cd01849 YlqF_related_GTPase Yl 98.5 2.4E-07 5.1E-12 65.3 5.9 57 7-68 98-155 (155)
365 PF03193 DUF258: Protein of un 98.5 1.4E-07 3.1E-12 66.1 4.2 61 9-72 35-101 (161)
366 TIGR03596 GTPase_YlqF ribosome 98.5 4E-07 8.7E-12 70.2 7.1 93 73-173 13-105 (276)
367 KOG0459 Polypeptide release fa 98.5 5.4E-07 1.2E-11 70.9 7.4 155 7-164 77-279 (501)
368 KOG0463 GTP-binding protein GP 98.5 1.9E-06 4.1E-11 67.4 9.7 163 6-174 130-361 (641)
369 PRK10416 signal recognition pa 98.4 4.1E-06 8.9E-11 65.7 10.7 94 57-162 196-301 (318)
370 KOG4273 Uncharacterized conser 98.4 5.7E-06 1.2E-10 61.4 10.7 158 9-170 4-221 (418)
371 cd03112 CobW_like The function 98.4 2.4E-06 5.2E-11 60.3 8.3 63 58-126 87-158 (158)
372 TIGR03348 VI_IcmF type VI secr 98.4 2.4E-06 5.1E-11 77.8 10.1 113 12-129 114-258 (1169)
373 PRK12288 GTPase RsgA; Reviewed 98.4 8.3E-07 1.8E-11 70.3 6.4 59 11-72 207-271 (347)
374 KOG0085 G protein subunit Galp 98.4 5E-07 1.1E-11 66.1 4.4 116 58-173 199-351 (359)
375 PF09547 Spore_IV_A: Stage IV 98.4 1.9E-05 4.1E-10 63.1 13.4 157 9-170 17-236 (492)
376 TIGR00064 ftsY signal recognit 98.4 5.5E-06 1.2E-10 63.6 10.0 93 57-162 154-259 (272)
377 KOG0099 G protein subunit Galp 98.3 2.8E-06 6.1E-11 63.4 7.9 116 58-173 202-371 (379)
378 PRK13796 GTPase YqeH; Provisio 98.3 4.1E-06 9E-11 67.0 9.5 93 70-170 58-158 (365)
379 PRK14974 cell division protein 98.3 1.3E-06 2.7E-11 68.8 6.1 93 58-163 223-322 (336)
380 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.7E-06 3.7E-11 67.1 6.7 101 65-173 7-108 (287)
381 COG1618 Predicted nucleotide k 98.3 0.00011 2.3E-09 51.2 14.4 146 9-171 5-176 (179)
382 COG1162 Predicted GTPases [Gen 98.3 1.3E-06 2.8E-11 66.9 5.2 59 11-72 166-230 (301)
383 TIGR00157 ribosome small subun 98.3 1.9E-06 4.1E-11 65.2 5.7 59 9-71 120-184 (245)
384 PRK11537 putative GTP-binding 98.2 1.6E-05 3.5E-10 62.4 10.7 85 58-152 91-186 (318)
385 PRK12289 GTPase RsgA; Reviewed 98.2 2.2E-06 4.7E-11 68.0 5.8 58 11-71 174-237 (352)
386 KOG1487 GTP-binding protein DR 98.2 3.2E-05 7E-10 57.8 11.1 88 10-99 60-154 (358)
387 COG0523 Putative GTPases (G3E 98.2 2.5E-05 5.3E-10 61.3 11.2 89 58-154 85-185 (323)
388 PRK01889 GTPase RsgA; Reviewed 98.2 6.9E-06 1.5E-10 65.5 8.2 84 79-167 110-193 (356)
389 PF02492 cobW: CobW/HypB/UreG, 98.2 1E-05 2.2E-10 58.3 8.3 81 58-145 85-171 (178)
390 KOG3859 Septins (P-loop GTPase 98.2 6E-06 1.3E-10 62.2 6.7 61 8-68 41-105 (406)
391 PRK13695 putative NTPase; Prov 98.2 6.5E-05 1.4E-09 53.8 11.9 21 10-30 1-21 (174)
392 TIGR03597 GTPase_YqeH ribosome 98.2 3.9E-06 8.5E-11 67.1 6.0 56 10-70 155-216 (360)
393 PRK13796 GTPase YqeH; Provisio 98.2 3.6E-06 7.8E-11 67.4 5.5 56 9-69 160-221 (365)
394 KOG0447 Dynamin-like GTP bindi 98.1 0.00013 2.7E-09 60.2 13.7 82 59-143 413-508 (980)
395 PRK14722 flhF flagellar biosyn 98.1 4.7E-05 1E-09 60.8 10.7 141 9-153 137-316 (374)
396 cd01854 YjeQ_engC YjeQ/EngC. 98.1 8.9E-06 1.9E-10 63.1 6.1 61 9-72 161-227 (287)
397 TIGR01425 SRP54_euk signal rec 98.1 1.9E-05 4.1E-10 64.0 7.8 22 9-30 100-121 (429)
398 PRK00098 GTPase RsgA; Reviewed 98.0 1.3E-05 2.8E-10 62.5 6.1 60 8-70 163-228 (298)
399 PF03266 NTPase_1: NTPase; In 98.0 2.7E-05 5.9E-10 55.4 6.8 134 11-159 1-163 (168)
400 PRK12727 flagellar biosynthesi 98.0 0.00022 4.8E-09 59.2 12.6 86 57-153 428-519 (559)
401 KOG1424 Predicted GTP-binding 98.0 8.6E-06 1.9E-10 66.1 4.2 56 9-69 314-370 (562)
402 cd03114 ArgK-like The function 97.9 0.0001 2.3E-09 51.4 8.9 33 57-92 91-123 (148)
403 cd03115 SRP The signal recogni 97.9 0.00016 3.5E-09 51.7 10.1 83 57-149 82-170 (173)
404 PF00448 SRP54: SRP54-type pro 97.9 0.0001 2.3E-09 53.8 8.9 84 58-152 84-174 (196)
405 PF06858 NOG1: Nucleolar GTP-b 97.9 6.4E-05 1.4E-09 42.8 5.7 44 81-125 13-58 (58)
406 COG1162 Predicted GTPases [Gen 97.9 0.00012 2.7E-09 56.2 8.8 97 74-173 72-169 (301)
407 KOG0469 Elongation factor 2 [T 97.8 4.7E-05 1E-09 62.0 6.3 114 9-126 19-162 (842)
408 cd02038 FleN-like FleN is a me 97.8 0.00013 2.8E-09 50.4 7.6 106 14-127 5-110 (139)
409 COG1419 FlhF Flagellar GTP-bin 97.8 0.00015 3.2E-09 57.9 8.1 158 9-176 203-399 (407)
410 PRK11889 flhF flagellar biosyn 97.8 0.0004 8.6E-09 55.8 10.4 85 58-152 321-411 (436)
411 COG3523 IcmF Type VI protein s 97.7 0.00017 3.7E-09 64.9 8.8 116 12-129 128-271 (1188)
412 PRK14721 flhF flagellar biosyn 97.7 0.00043 9.2E-09 56.3 10.2 135 8-153 190-361 (420)
413 KOG2485 Conserved ATP/GTP bind 97.7 6.3E-05 1.4E-09 57.7 5.0 59 8-68 142-206 (335)
414 TIGR02475 CobW cobalamin biosy 97.7 0.00065 1.4E-08 54.0 10.9 98 58-164 93-223 (341)
415 COG3640 CooC CO dehydrogenase 97.7 0.00061 1.3E-08 50.4 9.7 63 58-126 134-197 (255)
416 PRK00771 signal recognition pa 97.7 9.5E-05 2.1E-09 60.4 6.1 86 58-153 176-267 (437)
417 KOG1534 Putative transcription 97.7 0.00015 3.3E-09 52.6 6.4 113 59-171 99-251 (273)
418 PRK12726 flagellar biosynthesi 97.7 0.00054 1.2E-08 54.7 9.9 86 58-153 286-377 (407)
419 cd02042 ParA ParA and ParB of 97.6 0.0005 1.1E-08 44.7 8.0 82 12-105 2-84 (104)
420 PRK10867 signal recognition pa 97.6 0.001 2.2E-08 54.4 10.9 86 58-153 184-275 (433)
421 TIGR00959 ffh signal recogniti 97.6 0.00099 2.2E-08 54.4 10.8 86 58-153 183-274 (428)
422 KOG2484 GTPase [General functi 97.6 5.6E-05 1.2E-09 59.7 3.2 57 8-68 251-307 (435)
423 PRK05703 flhF flagellar biosyn 97.6 0.00069 1.5E-08 55.4 9.6 86 58-153 300-392 (424)
424 cd03111 CpaE_like This protein 97.6 0.00085 1.8E-08 44.0 8.2 103 12-123 2-106 (106)
425 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.001 2.2E-08 42.3 8.5 76 12-102 2-78 (99)
426 PF05621 TniB: Bacterial TniB 97.5 0.00073 1.6E-08 52.1 8.2 103 7-123 59-189 (302)
427 PRK14723 flhF flagellar biosyn 97.5 0.0019 4.1E-08 56.1 11.6 88 58-153 264-358 (767)
428 PRK12724 flagellar biosynthesi 97.5 0.0011 2.4E-08 53.7 9.4 143 9-161 223-404 (432)
429 PF11111 CENP-M: Centromere pr 97.4 0.012 2.5E-07 41.7 12.8 142 4-170 10-152 (176)
430 PRK06731 flhF flagellar biosyn 97.4 0.0025 5.4E-08 48.9 10.4 86 57-152 154-245 (270)
431 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0018 3.9E-08 46.5 9.0 26 9-34 25-50 (177)
432 PF13555 AAA_29: P-loop contai 97.4 0.00018 3.9E-09 42.0 2.9 21 11-31 25-45 (62)
433 PRK06995 flhF flagellar biosyn 97.4 0.0028 6.1E-08 52.5 10.7 23 9-31 256-278 (484)
434 PF13207 AAA_17: AAA domain; P 97.4 0.00015 3.3E-09 48.5 2.9 22 11-32 1-22 (121)
435 cd00009 AAA The AAA+ (ATPases 97.4 0.0017 3.6E-08 44.4 8.2 25 9-33 19-43 (151)
436 PRK14738 gmk guanylate kinase; 97.4 0.00033 7.1E-09 51.7 4.7 26 7-32 11-36 (206)
437 PRK12723 flagellar biosynthesi 97.3 0.0028 6E-08 51.2 9.8 86 57-152 254-346 (388)
438 PRK10751 molybdopterin-guanine 97.3 0.00028 6E-09 50.4 3.6 28 5-32 2-29 (173)
439 PRK08118 topology modulation p 97.3 0.0002 4.4E-09 51.0 3.0 22 11-32 3-24 (167)
440 KOG0780 Signal recognition par 97.3 0.00012 2.7E-09 57.7 1.9 47 56-102 182-234 (483)
441 COG1116 TauB ABC-type nitrate/ 97.3 0.00026 5.7E-09 52.9 3.5 24 11-34 31-54 (248)
442 PRK07261 topology modulation p 97.3 0.00021 4.6E-09 51.1 2.9 22 11-32 2-23 (171)
443 COG1161 Predicted GTPases [Gen 97.3 0.00027 5.9E-09 55.7 3.6 96 62-164 14-110 (322)
444 COG1126 GlnQ ABC-type polar am 97.2 0.00038 8.3E-09 50.9 3.7 26 9-34 28-53 (240)
445 KOG1533 Predicted GTPase [Gene 97.2 0.0012 2.6E-08 48.9 6.3 68 58-127 97-176 (290)
446 COG0563 Adk Adenylate kinase a 97.2 0.00027 5.9E-09 50.8 2.9 23 10-32 1-23 (178)
447 COG1136 SalX ABC-type antimicr 97.2 0.00027 5.8E-09 52.4 2.8 23 11-33 33-55 (226)
448 TIGR00235 udk uridine kinase. 97.2 0.00038 8.3E-09 51.3 3.7 27 6-32 3-29 (207)
449 PF13521 AAA_28: AAA domain; P 97.2 0.00022 4.8E-09 50.5 2.3 22 11-32 1-22 (163)
450 PF13671 AAA_33: AAA domain; P 97.2 0.00029 6.2E-09 48.6 2.8 20 12-31 2-21 (143)
451 cd03110 Fer4_NifH_child This p 97.1 0.006 1.3E-07 43.8 9.2 85 56-149 91-175 (179)
452 PF00005 ABC_tran: ABC transpo 97.1 0.00045 9.7E-09 47.3 3.0 24 10-33 12-35 (137)
453 cd01131 PilT Pilus retraction 97.1 0.0033 7.1E-08 46.1 7.6 21 12-32 4-24 (198)
454 COG0194 Gmk Guanylate kinase [ 97.1 0.00057 1.2E-08 48.9 3.4 26 8-33 3-28 (191)
455 cd02019 NK Nucleoside/nucleoti 97.1 0.00058 1.3E-08 41.0 2.8 21 12-32 2-22 (69)
456 COG4598 HisP ABC-type histidin 97.1 0.0017 3.7E-08 46.4 5.4 40 134-173 161-202 (256)
457 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0071 1.5E-07 41.9 8.4 24 10-33 27-50 (144)
458 PRK01889 GTPase RsgA; Reviewed 97.0 0.0008 1.7E-08 53.8 4.1 25 10-34 196-220 (356)
459 cd04178 Nucleostemin_like Nucl 97.0 0.002 4.2E-08 46.2 5.6 44 83-128 1-44 (172)
460 PRK14530 adenylate kinase; Pro 97.0 0.00062 1.3E-08 50.5 3.2 21 10-30 4-24 (215)
461 PRK08233 hypothetical protein; 97.0 0.00072 1.6E-08 48.6 3.4 25 8-32 2-26 (182)
462 COG3839 MalK ABC-type sugar tr 97.0 0.00074 1.6E-08 53.2 3.5 23 12-34 32-54 (338)
463 PF03215 Rad17: Rad17 cell cyc 97.0 0.0063 1.4E-07 51.1 9.1 20 12-31 48-67 (519)
464 KOG2484 GTPase [General functi 97.0 0.0035 7.5E-08 49.9 7.1 123 70-197 135-267 (435)
465 PF03205 MobB: Molybdopterin g 97.0 0.00066 1.4E-08 46.8 2.8 22 11-32 2-23 (140)
466 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0033 7.3E-08 42.8 6.1 23 10-32 23-45 (133)
467 PRK14737 gmk guanylate kinase; 96.9 0.00074 1.6E-08 49.0 2.9 24 10-33 5-28 (186)
468 cd00071 GMPK Guanosine monopho 96.9 0.00077 1.7E-08 46.4 2.9 21 12-32 2-22 (137)
469 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00078 1.7E-08 44.0 2.7 21 10-30 16-36 (107)
470 cd02036 MinD Bacterial cell di 96.9 0.031 6.8E-07 39.8 11.3 84 59-149 64-147 (179)
471 PRK06217 hypothetical protein; 96.9 0.0008 1.7E-08 48.6 3.0 23 10-32 2-24 (183)
472 PRK10078 ribose 1,5-bisphospho 96.9 0.00084 1.8E-08 48.7 3.1 22 11-32 4-25 (186)
473 KOG2743 Cobalamin synthesis pr 96.9 0.0013 2.7E-08 50.5 3.9 37 57-93 145-189 (391)
474 KOG3347 Predicted nucleotide k 96.9 0.00079 1.7E-08 46.3 2.6 24 7-30 5-28 (176)
475 cd03238 ABC_UvrA The excision 96.9 0.00093 2E-08 48.0 3.1 22 9-30 21-42 (176)
476 COG1117 PstB ABC-type phosphat 96.9 0.00081 1.8E-08 49.2 2.7 22 10-31 34-55 (253)
477 smart00382 AAA ATPases associa 96.9 0.00099 2.1E-08 45.1 3.1 26 10-35 3-28 (148)
478 COG1763 MobB Molybdopterin-gua 96.9 0.0053 1.2E-07 43.2 6.7 22 11-32 4-25 (161)
479 PF00004 AAA: ATPase family as 96.9 0.00098 2.1E-08 45.0 2.9 21 12-32 1-21 (132)
480 PF13238 AAA_18: AAA domain; P 96.9 0.00089 1.9E-08 45.1 2.7 21 12-32 1-21 (129)
481 TIGR02322 phosphon_PhnN phosph 96.9 0.00088 1.9E-08 48.2 2.8 22 11-32 3-24 (179)
482 PRK05480 uridine/cytidine kina 96.8 0.0011 2.4E-08 48.9 3.3 26 7-32 4-29 (209)
483 PRK05541 adenylylsulfate kinas 96.8 0.0014 3E-08 47.0 3.7 29 1-31 1-29 (176)
484 PRK05416 glmZ(sRNA)-inactivati 96.8 0.02 4.3E-07 44.5 10.1 20 11-30 8-27 (288)
485 COG0541 Ffh Signal recognition 96.8 0.0013 2.9E-08 52.9 3.7 92 8-99 99-230 (451)
486 PRK03839 putative kinase; Prov 96.8 0.0011 2.3E-08 47.8 2.9 21 11-31 2-22 (180)
487 KOG2423 Nucleolar GTPase [Gene 96.8 0.00055 1.2E-08 54.3 1.4 59 5-67 303-361 (572)
488 COG1120 FepC ABC-type cobalami 96.8 0.0011 2.3E-08 50.3 2.9 21 11-31 30-50 (258)
489 COG3840 ThiQ ABC-type thiamine 96.8 0.0012 2.5E-08 47.3 2.8 23 9-31 25-47 (231)
490 TIGR03263 guanyl_kin guanylate 96.8 0.0011 2.5E-08 47.5 2.9 22 11-32 3-24 (180)
491 PRK13851 type IV secretion sys 96.8 0.0077 1.7E-07 47.9 7.7 26 8-33 161-186 (344)
492 KOG1970 Checkpoint RAD17-RFC c 96.8 0.014 3.1E-07 48.5 9.2 85 84-170 196-283 (634)
493 PF04665 Pox_A32: Poxvirus A32 96.8 0.0013 2.9E-08 49.3 3.2 25 8-32 12-36 (241)
494 PTZ00088 adenylate kinase 1; P 96.8 0.0015 3.3E-08 48.9 3.5 23 8-30 5-27 (229)
495 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.6E-08 47.7 2.8 21 10-30 4-24 (188)
496 cd02023 UMPK Uridine monophosp 96.7 0.0012 2.6E-08 48.3 2.8 21 12-32 2-22 (198)
497 KOG3929 Uncharacterized conser 96.7 0.00081 1.7E-08 50.5 1.7 163 7-172 43-253 (363)
498 cd01129 PulE-GspE PulE/GspE Th 96.7 0.01 2.2E-07 45.5 7.8 84 11-98 82-165 (264)
499 cd03226 ABC_cobalt_CbiO_domain 96.7 0.002 4.4E-08 47.4 3.7 24 10-33 27-50 (205)
500 PF07728 AAA_5: AAA domain (dy 96.7 0.0014 3E-08 45.0 2.7 21 11-31 1-21 (139)
No 1
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=241.00 Aligned_cols=200 Identities=80% Similarity=1.173 Sum_probs=179.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+|++++|..+|||||||.|+..+.|...|.+|+++++...++.+.+..+.+.+|||+||++|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCC-CCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||+++..+|+....|+..+....+. ++.+++|+||.||.+.++...++.+..++++++.|+++|++.|.||..+|.-
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999998885 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccCCcccc-cccccccccCCCCCCCCCCCCCCCCcC
Q 028466 166 IAAALPGMETLSSTKQ-EDLVDVNLKSSNTNTSQSQPQSGGCAC 208 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
|...+++....+.... ...+.++++++...+-.++ .++|||
T Consensus 180 Iaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~--~~~~~C 221 (221)
T KOG0094|consen 180 IAAALPGMEVLEILSKQESMVDINLKGSPNEQQASK--PGLCSC 221 (221)
T ss_pred HHHhccCccccccccccccceeEEccCCCCcccccC--CCCCCC
Confidence 9999999987663433 3366777775533322212 456888
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=241.94 Aligned_cols=175 Identities=41% Similarity=0.683 Sum_probs=166.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|||||+|+.||.++.|.+.+..|+++++..+.+.++++.+++.||||+|+++|+++...|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~~~ 165 (208)
+|||+++.+||..+.+|+.++..+...++|.++|+||+|+.+.+.+..++++.++.+++++ |+++||+++.+|+++|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHcCCCccCCcccc
Q 028466 166 IAAALPGMETLSSTKQ 181 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~ 181 (208)
|...+...........
T Consensus 167 la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHhcccCCCCC
Confidence 9988866655544443
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-41 Score=233.64 Aligned_cols=173 Identities=41% Similarity=0.789 Sum_probs=164.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..++||+|+|..+||||||+-|+..+.|.+...+|++--+..+.+..++..+++.||||+|+++|..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||+++.+||..++.|+..+.....+++.+.||+||+|+.+.+++...++..++...++.|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998888888888999999999889999999999999999999999999999999999999
Q ss_pred HHHcCCCccCCcc
Q 028466 167 AAALPGMETLSST 179 (208)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (208)
.+.++........
T Consensus 163 a~~lp~~~~~~~~ 175 (200)
T KOG0092|consen 163 AEKLPCSDPQERQ 175 (200)
T ss_pred HHhccCccccccc
Confidence 9999888776654
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-39 Score=227.83 Aligned_cols=168 Identities=44% Similarity=0.753 Sum_probs=162.9
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+....+||+++|.++||||+|+.+|..+.|...+..++++++...++..++..+.+.+|||+|++.|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+++|||+++..+|+.+..|+..+..+....+|++||+||+|+...+++..++.+++|.++|+.|+++||++|.||++.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999988999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028466 165 KIAAALPG 172 (208)
Q Consensus 165 ~l~~~~~~ 172 (208)
.|.+.+..
T Consensus 168 ~La~~i~~ 175 (207)
T KOG0078|consen 168 SLARDILQ 175 (207)
T ss_pred HHHHHHHh
Confidence 99999875
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-39 Score=223.58 Aligned_cols=170 Identities=39% Similarity=0.683 Sum_probs=162.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
....+|++++|..|||||+|+.+++...|.+.+..|.++++....+.++++.++++||||+|++.|+..+..|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||+++.++|..+..|+..++++..+++.++|++||+|+...+++..++.++|++++++.++++||++++|++++|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcc
Q 028466 166 IAAALPGMET 175 (208)
Q Consensus 166 l~~~~~~~~~ 175 (208)
....+++...
T Consensus 163 ta~~Iy~~~q 172 (216)
T KOG0098|consen 163 TAKEIYRKIQ 172 (216)
T ss_pred HHHHHHHHHH
Confidence 9888765533
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.8e-39 Score=216.83 Aligned_cols=200 Identities=36% Similarity=0.653 Sum_probs=174.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+++|.+|||||+|+-+|+.+.|.+....+++.++..+.+.+++..+++.||||+|+++|+.++..|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 45699999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++.+++|..+..|+.++..+.. ++...++|+||+|...++.+..++...+++++++.|+++||++.++|+..|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999987764 56777899999999878999999999999999999999999999999999999
Q ss_pred HHHHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466 166 IAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC 208 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
+.+.+.+.+..+...... .+.++-+ ......+..+.++|+|
T Consensus 169 lveKIi~tp~l~~~~n~~-~~~~i~~-~p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 169 LVEKIIETPSLWEEGNSS-AGLDIAS-DPDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHhcCcchhhccCCc-ccccccc-CCCcccccccCCccCC
Confidence 999999998888764322 2233322 1112233445566766
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.3e-36 Score=222.62 Aligned_cols=163 Identities=36% Similarity=0.676 Sum_probs=150.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+.|+++|..|||||||+++|..+.|...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888899998888888899998899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...+.++++.+. ++.|+++||++|.|++++|++|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766677999999999999877888888888888875 789999999999999999999998
Q ss_pred HcCC
Q 028466 169 ALPG 172 (208)
Q Consensus 169 ~~~~ 172 (208)
.+..
T Consensus 161 ~~~~ 164 (202)
T cd04120 161 DILK 164 (202)
T ss_pred HHHH
Confidence 8754
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=213.52 Aligned_cols=176 Identities=38% Similarity=0.623 Sum_probs=162.1
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|.+..+..-+||+++|.+|+|||||++++..++|...+-.+++.++..+.+.+++..+.+.||||+|+++|.++--.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 66666667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCc--cCcCHHHHHHHHHHcC-CeEEEeec
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDK--RQVSIEEGEAKARELN-VMFIETSA 153 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~ 153 (208)
++|..++|||++++++|+.+..|..++..... ...|+||++||+|+... +.+....+..|+...+ ++|+++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999987765 45689999999998653 7888999999999886 89999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCccC
Q 028466 154 KAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
++..||+++|..+.+.....+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cccccHHHHHHHHHHHHHhccch
Confidence 99999999999999998776654
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.8e-36 Score=221.11 Aligned_cols=173 Identities=35% Similarity=0.562 Sum_probs=152.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888999888887778787 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~ 163 (208)
||++++++++.+..|+..+.... ..+.|++||+||.|+.+.......++.++++..+ ..++++||+++.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 2568999999999997666777888999999998 699999999999999999
Q ss_pred HHHHHHcCCCccCCccccc
Q 028466 164 RKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~ 182 (208)
++|.+.+.+..........
T Consensus 161 ~~l~~~l~~~~~~~~~~~~ 179 (201)
T cd04107 161 RFLVKNILANDKNLQQAET 179 (201)
T ss_pred HHHHHHHHHhchhhHhhcC
Confidence 9999988765544444333
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.4e-36 Score=216.64 Aligned_cols=164 Identities=35% Similarity=0.596 Sum_probs=151.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 56999999999999999999999999988888888888887888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++++++|+.+..|+..+.... .+.|++||+||.|+...+.+...+++.+++..++.|+++||++|.||+++|++|.
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999997664 5799999999999987778889999999999999999999999999999999999
Q ss_pred HHcCC
Q 028466 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
+.+..
T Consensus 164 ~~i~~ 168 (189)
T cd04121 164 RIVLM 168 (189)
T ss_pred HHHHH
Confidence 87753
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=214.13 Aligned_cols=171 Identities=36% Similarity=0.690 Sum_probs=162.8
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+++|.++||||-|+.|+..+.|..+..+|+++++....+.++++.++..||||+|+++|+.....|++.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 44568899999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++++|||++...+|+.+..|+.+++.+...++++++|+||.||...+.+..++.+.++...+..|+++||++..|++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028466 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
..++..+...-
T Consensus 169 ~~~l~~I~~~v 179 (222)
T KOG0087|consen 169 ERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988875543
No 12
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.3e-35 Score=218.95 Aligned_cols=167 Identities=38% Similarity=0.694 Sum_probs=153.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++.+...+..++++++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 36799999999999999999999999988788899998888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+......+.|+++|+||.|+...+.....+...++..++++++++||+++.|++++|++|
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999997777777888888988889999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
...+.+.
T Consensus 170 ~~~i~~~ 176 (216)
T PLN03110 170 LLEIYHI 176 (216)
T ss_pred HHHHHHH
Confidence 9888653
No 13
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=204.52 Aligned_cols=184 Identities=39% Similarity=0.649 Sum_probs=170.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+-++.+|+|.+|+|||+|+-+|..+.|..+|..+++.++..+++.+++..+++.||||+|++.|+.+...|++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||+++.+||.....|++.+.+.+. .+|-++|+||.|..+.+.+..++++.++...++.+|++|+++.+|++.+|..|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 9999999999999999999987764 789999999999998888999999999999999999999999999999999999
Q ss_pred HHcCCCccCCcccccccccccccCC
Q 028466 168 AALPGMETLSSTKQEDLVDVNLKSS 192 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (208)
+.+.........++.......+++.
T Consensus 166 ~qvl~~k~r~~~~~~r~~~~~l~~n 190 (198)
T KOG0079|consen 166 KQVLQAKLRESVEQQRADAVSLKDN 190 (198)
T ss_pred HHHHHHHHhhcHHHHhhcceEeccC
Confidence 9988877666666666566666655
No 14
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2e-35 Score=215.51 Aligned_cols=185 Identities=33% Similarity=0.525 Sum_probs=153.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998877777776443 3455677877889999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
++++++++.+..|+..+..... .+.|+++|+||+|+.....+...+...++..+++.++++||+++.|++++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876542 5689999999999977777777788888888899999999999999999999999
Q ss_pred HHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466 168 AALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC 208 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
+.+....... .++......++.|+.+|||
T Consensus 160 ~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGG------------QGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhccc------------CCCcCCCCCcccccccCce
Confidence 8874333222 1233444556777777776
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.6e-35 Score=213.83 Aligned_cols=169 Identities=37% Similarity=0.671 Sum_probs=151.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 57999999999999999999999999888888888888877888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++++++++.+..|+..+.... ...|++||+||.|+.+.......+...++...+..++++|++++.|++++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999887654 5689999999999987666777888888888899999999999999999999999
Q ss_pred HHcCCCccCC
Q 028466 168 AALPGMETLS 177 (208)
Q Consensus 168 ~~~~~~~~~~ 177 (208)
..+.......
T Consensus 164 ~~~~~~~~~~ 173 (199)
T cd04110 164 ELVLRAKKDN 173 (199)
T ss_pred HHHHHhhhcc
Confidence 9986654444
No 16
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.9e-35 Score=211.77 Aligned_cols=163 Identities=40% Similarity=0.698 Sum_probs=149.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888888887778888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+......+.|+++|+||.|+.+...+...+...++...+++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777888888888889999999999999999999999999
Q ss_pred cCC
Q 028466 170 LPG 172 (208)
Q Consensus 170 ~~~ 172 (208)
+..
T Consensus 161 ~~~ 163 (188)
T cd04125 161 IIK 163 (188)
T ss_pred HHH
Confidence 853
No 17
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=202.95 Aligned_cols=166 Identities=40% Similarity=0.708 Sum_probs=151.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
...++++++|.+-+|||+|++.++.+++++-.+|+++++++...+++. +..+++.+|||+|+++|++++..|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 357999999999999999999999999999999999999988887664 5678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CC-CeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERG-SD-VIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|||+++.++|+.+..|+.+...+.. +. +.+.+|++|.|+...+++..+++++++...+..|+++|+++|.||++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999998776554 44 4467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
..|.+.+..
T Consensus 166 ~mlaqeIf~ 174 (213)
T KOG0091|consen 166 DMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHH
Confidence 999887643
No 18
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=211.75 Aligned_cols=167 Identities=42% Similarity=0.731 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|.+|||||||+++|.++.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998853 5677777777777778888889999999999999999889999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
||++++++++.+..|+..+......+.|+++|+||.|+...+.....+.+.++..++.+++++|++++.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776567899999999999766667777888888888999999999999999999999999
Q ss_pred HcCCCccC
Q 028466 169 ALPGMETL 176 (208)
Q Consensus 169 ~~~~~~~~ 176 (208)
.+.+....
T Consensus 161 ~~~~~~~~ 168 (191)
T cd04112 161 ELKHRKYE 168 (191)
T ss_pred HHHHhccc
Confidence 98766544
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=5.1e-35 Score=216.45 Aligned_cols=168 Identities=33% Similarity=0.556 Sum_probs=142.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|.+|||||||+++|+.+.+.. +.++.+.++..... ..+.+.||||+|++.|..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 46666655544332 3478999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC-------------------ccCcCHHHHHHHHHHcC-----
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD-------------------KRQVSIEEGEAKARELN----- 145 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (208)
|++++++|+.+..|+..+......+.|+|||+||.|+.+ .+++..++++.++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888766556789999999999965 46777889999998876
Q ss_pred ---------CeEEEeecCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466 146 ---------VMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 146 ---------~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~ 182 (208)
+.|+++||++|.||+++|..+.+.+.........+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~ 201 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEAN 201 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6899999999999999999999988766555544433
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.4e-34 Score=206.64 Aligned_cols=163 Identities=35% Similarity=0.662 Sum_probs=149.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888888788777788888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
||++++++++.+..|+..+......+.|+++|+||.|+....+....+++.++...+++++++||++|.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766677899999999999877777888999999999999999999999999999999987
Q ss_pred HcC
Q 028466 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 764
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.4e-34 Score=213.18 Aligned_cols=168 Identities=28% Similarity=0.483 Sum_probs=148.0
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
|......+||+++|..|||||+|+.+|..+.|...+.++.+.++. ..+.+++..+.+.||||+|++.|..+...+++++
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 344456899999999999999999999999999888899876654 4577888899999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eE
Q 028466 83 SVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MF 148 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 148 (208)
|++|+|||++++++|+. +..|+..+.... .+.|++||+||.|+.+ .+.+..+++++++.++++ .|
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 589999888655 4689999999999854 256788899999999998 69
Q ss_pred EEeecCCCC-CHHHHHHHHHHHcCC
Q 028466 149 IETSAKAGF-NIKALFRKIAAALPG 172 (208)
Q Consensus 149 ~~~S~~~~~-~v~~~~~~l~~~~~~ 172 (208)
+++||++|. |++++|..+...+.+
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999887654
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.4e-34 Score=212.72 Aligned_cols=164 Identities=39% Similarity=0.602 Sum_probs=148.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888888887764 468999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
||++++++++.+..|+..+..... .+.|+++|+||.|+.+.++....+...+++.+++.++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887643 35689999999999777777888889999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028466 166 IAAALPGM 173 (208)
Q Consensus 166 l~~~~~~~ 173 (208)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988654
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.7e-34 Score=207.40 Aligned_cols=160 Identities=37% Similarity=0.594 Sum_probs=143.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||+|+.++..+.|..++.++.+..+ ...+.+++..+.+.||||+|++.|..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888889887655 455678888899999999999999999999999999999999
Q ss_pred eCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc----------CcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466 90 DVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR----------QVSIEEGEAKARELNV-MFIETSAKAGF 157 (208)
Q Consensus 90 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (208)
|++++++|+.+ ..|+..+.... .+.|++||+||+|+.+.+ .+...++.++++.+++ .|+++||+++.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987665 479999999999996542 4778899999999998 69999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028466 158 NIKALFRKIAAALP 171 (208)
Q Consensus 158 ~v~~~~~~l~~~~~ 171 (208)
||+++|+.+.+.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 24
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-33 Score=208.99 Aligned_cols=165 Identities=39% Similarity=0.720 Sum_probs=147.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888888888887777766 4566789999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
|||++++++++.+..|+..+..... ...|++||+||.|+.+...+...+...+++.+++.++++|++++.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876643 457889999999998777778888899999999999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9877544
No 25
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.6e-34 Score=202.25 Aligned_cols=160 Identities=39% Similarity=0.669 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++++.+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899888888788888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+......+.|+++|+||.|+.+.+.+...+...+++..+.+++++||+++.|++++|.+|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887665679999999999998777777889999999899999999999999999999999875
No 26
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=6.1e-34 Score=203.60 Aligned_cols=164 Identities=42% Similarity=0.742 Sum_probs=150.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988888998888877788888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||+++++++..+..|+..+......+.|+++|+||.|+.+.......+...++...+.+++++||+++.|++++|.+|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999876656799999999999987666777788888888899999999999999999999999
Q ss_pred HHcC
Q 028466 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 162 ~~~~ 165 (167)
T cd01867 162 KDIK 165 (167)
T ss_pred HHHH
Confidence 8874
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.9e-34 Score=206.14 Aligned_cols=162 Identities=27% Similarity=0.507 Sum_probs=145.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+++|..|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4579999999999999999999999999888888887555 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||++++++|+.+ ..|+..+.... ++.|++||+||.|+.+ .+.+...+++++++++++ .|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 79999988765 5799999999999854 245788999999999996 899999
Q ss_pred cCCCCC-HHHHHHHHHHHc
Q 028466 153 AKAGFN-IKALFRKIAAAL 170 (208)
Q Consensus 153 ~~~~~~-v~~~~~~l~~~~ 170 (208)
|+++.| |+++|..+.+..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 28
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=7.7e-34 Score=202.71 Aligned_cols=162 Identities=38% Similarity=0.718 Sum_probs=146.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777777789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+..+++..++++++++||+++.|++++|++|...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999997776677778888888889999999999999999999999987
Q ss_pred cC
Q 028466 170 LP 171 (208)
Q Consensus 170 ~~ 171 (208)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=208.86 Aligned_cols=165 Identities=33% Similarity=0.556 Sum_probs=145.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.++||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 5679999999999999999999999998877777776444 456677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++++++.+..|+..+..... .+.|+++|+||.|+.+...+...+...++..++.+++++||+++.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 57899999999999766666777788888888899999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9988753
No 30
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.5e-34 Score=207.20 Aligned_cols=163 Identities=33% Similarity=0.522 Sum_probs=142.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|..|||||||+.++..+.|...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 3569999999999999999999999999888888887554 345567888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcC-CeEEEee
Q 028466 87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S 152 (208)
+|||++++++|+.+. .|+..+.... .+.|++||+||.|+.+.. .+...+++.+++.++ ..|+++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999986 5887776543 579999999999996432 355678889999988 5899999
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028466 153 AKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~ 171 (208)
|++|.|++++|.+|.+.+.
T Consensus 159 Ak~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-35 Score=193.52 Aligned_cols=168 Identities=36% Similarity=0.677 Sum_probs=158.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+|++|+|.+.+|||||+.++.+..|...+.++.++++..+++.-..+++.+.+|||.|++.|+.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 34579999999999999999999999999999999999999999877788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
++||+++.++|..++.|...+..+.-.+.|+|+|+||+|+.+++.+..++.+.++.++|..|+++|++.+.||+.+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999998887899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCc
Q 028466 167 AAALPGME 174 (208)
Q Consensus 167 ~~~~~~~~ 174 (208)
...+.+..
T Consensus 179 v~~Ic~km 186 (193)
T KOG0093|consen 179 VDIICDKM 186 (193)
T ss_pred HHHHHHHh
Confidence 98875443
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.1e-34 Score=204.41 Aligned_cols=164 Identities=33% Similarity=0.529 Sum_probs=145.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 358999999999999999999999999887778876444 4456778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
|||++++++++.+..|+..+..... .+.|+++|+||.|+...+++...+...+++..+++|+++||+++.|++++|++|
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999988887776533 579999999999997777788888999999999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 987753
No 33
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=193.86 Aligned_cols=166 Identities=39% Similarity=0.670 Sum_probs=157.1
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
....-+|++++|+.|+|||+|+.+|+.+++.+....++++++.+..++..++.+++.||||+|+++|+...+.|++.+.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
.++|||+++.++|+.+..|+..++....+++-+++++||.|+.+++++...++..++.+..+.++++|+++|+|+++.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999887
Q ss_pred HHHHHc
Q 028466 165 KIAAAL 170 (208)
Q Consensus 165 ~l~~~~ 170 (208)
.....+
T Consensus 165 ~c~~tI 170 (214)
T KOG0086|consen 165 KCARTI 170 (214)
T ss_pred HHHHHH
Confidence 666554
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.3e-33 Score=201.70 Aligned_cols=163 Identities=42% Similarity=0.742 Sum_probs=148.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998888888888888878888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
||+++++++..+..|+..+......+.|+++|+||.|+.........++..++...+++++++|++++.|++++|.+|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988766567899999999999777777788889999999999999999999999999999998
Q ss_pred HcC
Q 028466 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 763
No 35
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=207.33 Aligned_cols=167 Identities=37% Similarity=0.695 Sum_probs=151.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999888777888888887888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||+++++++..+..|+..+......+.|+++|+||.|+...+.....+..++++.+++.++++|++++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876666679999999999997777778888999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 164 ~~~~~~~ 170 (210)
T PLN03108 164 AAKIYKK 170 (210)
T ss_pred HHHHHHH
Confidence 9877543
No 36
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-33 Score=203.65 Aligned_cols=160 Identities=28% Similarity=0.526 Sum_probs=142.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|..|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888887655 35677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466 89 YDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (208)
||++++++|+.+ ..|+..+.... .+.|+++|+||.|+.+ .+.+...+++++++++++ .|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 78999888765 5789999999999854 235778899999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHc
Q 028466 155 AGFN-IKALFRKIAAAL 170 (208)
Q Consensus 155 ~~~~-v~~~~~~l~~~~ 170 (208)
++++ ++++|..+.+..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998854
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2e-33 Score=200.67 Aligned_cols=162 Identities=31% Similarity=0.598 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999998888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
|++++++++.+..|+..+..... .+.|+++|+||.|+.+.......+...++...+++++++||+++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4689999999999976566778888888888889999999999999999999
Q ss_pred HHHHHcC
Q 028466 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998763
No 38
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-33 Score=199.40 Aligned_cols=162 Identities=41% Similarity=0.705 Sum_probs=146.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888878877888888887899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 166 (208)
|||++++++++.+..|+..+......+.|+++|+||+|+...++....++..+++.++. .++++|+++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876666799999999999977777777888888888885 78999999999999999999
Q ss_pred HHH
Q 028466 167 AAA 169 (208)
Q Consensus 167 ~~~ 169 (208)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.4e-33 Score=204.02 Aligned_cols=166 Identities=23% Similarity=0.512 Sum_probs=144.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|..|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999988888788888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-----cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-----RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
|++++++++.+..|+..+........| ++|+||.|+... .+....+...++...++.++++||+++.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555566 678999998521 11224566778888889999999999999999999
Q ss_pred HHHHHcCCCccC
Q 028466 165 KIAAALPGMETL 176 (208)
Q Consensus 165 ~l~~~~~~~~~~ 176 (208)
++.+.+.+.+..
T Consensus 160 ~l~~~l~~~~~~ 171 (182)
T cd04128 160 IVLAKAFDLPLT 171 (182)
T ss_pred HHHHHHHhcCCC
Confidence 999988765443
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.8e-33 Score=203.53 Aligned_cols=164 Identities=39% Similarity=0.652 Sum_probs=146.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------CeEEEEEEEecCCchhhccchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 77 (208)
+.+||+++|++|||||||++++..+.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888888877776666554 35678999999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
+++++|++|+|||+++++++..+..|+..+..... .+.|+++|+||.|+.+.+.....++..++..++++++++||+++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999999999999999999998876543 57899999999999877777888899999999999999999999
Q ss_pred CCHHHHHHHHHHHcC
Q 028466 157 FNIKALFRKIAAALP 171 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~ 171 (208)
.|++++|++|.+.+.
T Consensus 163 ~~v~~l~~~l~~~~~ 177 (180)
T cd04127 163 TNVEKAVERLLDLVM 177 (180)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998763
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.1e-33 Score=198.88 Aligned_cols=160 Identities=44% Similarity=0.772 Sum_probs=152.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 91 VASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++++++++.+..|+..+......+.|++||+||.|+.+.+++..++++.+++++++.|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988788999999999999999999999999999999999999876
No 42
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.8e-33 Score=198.51 Aligned_cols=163 Identities=37% Similarity=0.747 Sum_probs=148.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999999887888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++++.++..+..|+..+......+.|+++|+||.|+...++....+...++...++.++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998877666799999999999977677777888888888889999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 43
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3.3e-33 Score=198.82 Aligned_cols=161 Identities=36% Similarity=0.576 Sum_probs=141.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 47999999999999999999999988777777765 44456677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||++++++++.+..|+..+..... .+.|+++|+||.|+.+.......+...+++.++.+++++||+++.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 5789999999999976666667777778888889999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 44
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.9e-33 Score=205.20 Aligned_cols=162 Identities=25% Similarity=0.503 Sum_probs=140.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+|+|..|||||+|+.+|..+.++..+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999888898875553 5677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466 89 YDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (208)
||++++++|+.+ ..|...+.. ...+.|++||+||+|+.++ ..+..++...++++.++ .|+++||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 456665544 3467999999999999542 13567789999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHcCC
Q 028466 155 AGFN-IKALFRKIAAALPG 172 (208)
Q Consensus 155 ~~~~-v~~~~~~l~~~~~~ 172 (208)
++.+ |+++|.........
T Consensus 159 ~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 159 SSERSVRDVFHVATVASLG 177 (222)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9985 99999999986544
No 45
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.4e-33 Score=197.09 Aligned_cols=161 Identities=40% Similarity=0.730 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888788888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+......+.|+++|+||.|+.+..+....++..++...+..++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998777778888899999999999999999999999999999875
Q ss_pred c
Q 028466 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 3
No 46
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=9.5e-33 Score=201.88 Aligned_cols=164 Identities=37% Similarity=0.656 Sum_probs=142.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|.+|||||||+++|+++.+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5778887777777888888888999999999999999998999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc----cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK----RQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
||++++++++.+..|+..+.... .+.|+++|+||.|+.+. .++...++..++..+++.++++|++++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887643 46899999999998542 23445667788888889999999999999999999
Q ss_pred HHHHHcCCCc
Q 028466 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+....
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999886443
No 47
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=204.19 Aligned_cols=170 Identities=38% Similarity=0.653 Sum_probs=145.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|.+|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 35799999999999999999999988774 45677777777777778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHH-HHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 87 IVYDVASRQSFLNTTK-WVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+|||++++++++.+.. |...+.... ..+.|+++|+||.|+.........+...++..+++.|+++|++++.|++++|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999866 545444332 24578999999999977667777788888888899999999999999999999
Q ss_pred HHHHHcCCCccCC
Q 028466 165 KIAAALPGMETLS 177 (208)
Q Consensus 165 ~l~~~~~~~~~~~ 177 (208)
+|.+.+.+.+..-
T Consensus 171 ~l~~~~~~~~~~~ 183 (211)
T PLN03118 171 ELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHhhhhhh
Confidence 9999997765443
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=8.6e-33 Score=197.83 Aligned_cols=163 Identities=39% Similarity=0.725 Sum_probs=148.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+|+|.+|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||++.+..+...+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988877778888888778888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
||+++++++..+..|+..+......+.|+++|+||.|+.........+.+.++...++.++++|++++.|++++|.++.+
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776678999999999999766677788888899999999999999999999999999998
Q ss_pred HcC
Q 028466 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 164 ~~~ 166 (168)
T cd01866 164 EIY 166 (168)
T ss_pred HHH
Confidence 764
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.5e-33 Score=206.09 Aligned_cols=164 Identities=32% Similarity=0.589 Sum_probs=145.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 77899999999999999999999999998888999988888877777777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+.... .+.|+++|+||.|+.. ......++ .+++..++.|+++||+++.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999988654 5799999999999853 33334444 6677778999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=8.1e-33 Score=198.23 Aligned_cols=163 Identities=37% Similarity=0.631 Sum_probs=144.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|||||||+++++++.+...+.++.+.++....+.+++..+.+.+|||||++.|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998899999888887888888888899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
+++++++..+..|+..+..... ...|+++|+||.|+.+... ....+...++.+++.+++++||+++.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998865543 4578999999999865433 335566778888889999999999999999999999
Q ss_pred HHcCCC
Q 028466 168 AALPGM 173 (208)
Q Consensus 168 ~~~~~~ 173 (208)
+.+.++
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 988543
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.3e-33 Score=201.85 Aligned_cols=166 Identities=31% Similarity=0.462 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888877665443 4444 6678899999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc----CcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHH
Q 028466 89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR----QVSIEEGEAKARELNV-MFIETSAKAGFNIKAL 162 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 162 (208)
||++++++++.+. .|+..+... ..+.|+++|+||.|+.... .+...++.+++..+++ .++++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999975 587776644 3578999999999986532 4567788889999988 9999999999999999
Q ss_pred HHHHHHHcCCCccCC
Q 028466 163 FRKIAAALPGMETLS 177 (208)
Q Consensus 163 ~~~l~~~~~~~~~~~ 177 (208)
|..+.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999986444333
No 52
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6.6e-33 Score=197.65 Aligned_cols=162 Identities=33% Similarity=0.569 Sum_probs=142.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888777777776443 45677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.......+...+++.++++++++||+++.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887654 36799999999999977666667777888888889999999999999999999999
Q ss_pred HHcC
Q 028466 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8763
No 53
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.5e-32 Score=195.26 Aligned_cols=159 Identities=40% Similarity=0.724 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC--CeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+||+++|.+|+|||||+++++++.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877777776 677899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++++++++.+..|+..+.... .+.|+++|+||.|+..+..+..+++..+++.++++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886544 5799999999999977777777888899999999999999999999999999997
Q ss_pred HH
Q 028466 168 AA 169 (208)
Q Consensus 168 ~~ 169 (208)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.5e-32 Score=196.24 Aligned_cols=162 Identities=34% Similarity=0.606 Sum_probs=141.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888887777777888889999999999999998889999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+..... +.|+++|+||.|+.. .... .+...++...++.++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987664 799999999999963 2332 34455666777899999999999999999999998
Q ss_pred cCCCc
Q 028466 170 LPGME 174 (208)
Q Consensus 170 ~~~~~ 174 (208)
+.+.+
T Consensus 158 ~~~~~ 162 (166)
T cd00877 158 LLGNP 162 (166)
T ss_pred HHhcc
Confidence 86544
No 55
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-34 Score=189.95 Aligned_cols=163 Identities=40% Similarity=0.695 Sum_probs=154.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
.-+||+++|..|+|||+|++++..+-|++.-..++++++..+++++++..+++.||||+|+++|+++...|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 35899999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++...+|+-+.+|+.++.++....+.-|+|+||+|+.+.+++.....+.+......-|+++|+++.+|++.+|..+.
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 99999999999999999999999988899999999999988889988889999998888999999999999999999988
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
..+
T Consensus 166 ~rl 168 (213)
T KOG0095|consen 166 CRL 168 (213)
T ss_pred HHH
Confidence 665
No 56
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.1e-32 Score=194.32 Aligned_cols=160 Identities=85% Similarity=1.238 Sum_probs=146.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||++++++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888888888888888888887789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+......+.|+++++||.|+....+....+....+...++.++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999996666677788888888889999999999999999999999875
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=2.8e-32 Score=194.20 Aligned_cols=162 Identities=47% Similarity=0.811 Sum_probs=147.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888787888888888888888888789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+......+.|+++|+||+|+....+...+.++.+++.+++.++++|+.++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999987666677788888888889999999999999999999999988
Q ss_pred cC
Q 028466 170 LP 171 (208)
Q Consensus 170 ~~ 171 (208)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 74
No 58
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.2e-32 Score=196.86 Aligned_cols=159 Identities=33% Similarity=0.521 Sum_probs=138.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|||||||+.++..+.+...+.++.+..+. ..+..++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888876553 4566778888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEeecC
Q 028466 89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~ 154 (208)
||++++++++.+. .|+..+.... .+.|++||+||.|+.+. +.+...++++++++.+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986 5888776543 57899999999998543 4566778888888887 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028466 155 AGFNIKALFRKIAAA 169 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~ 169 (208)
+|.|++++|+.++..
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999874
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5.8e-32 Score=193.86 Aligned_cols=164 Identities=39% Similarity=0.627 Sum_probs=145.3
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.+..+||+++|.+|||||||+++++++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999999887788888777777888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (208)
|+|||++++++++.+..|+..+..... .+.|+++|+||.|+. .......++++++++++. .++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999988766442 468999999999985 456667888899888884 89999999999999
Q ss_pred HHHHHHHHHc
Q 028466 161 ALFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
++|+++.+.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 60
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8e-34 Score=191.25 Aligned_cols=168 Identities=40% Similarity=0.685 Sum_probs=156.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+|++++|..-||||||+=+++.++|......+..-.+..+.+++.+....+.||||+|+++|..+-+.|++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 35799999999999999999999999998877777777778888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++|.++|+.++.|...++...+..+-+++|+||+|+.+++.+...+++..+...|+.|+++||+++.|+.++|+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCc
Q 028466 167 AAALPGME 174 (208)
Q Consensus 167 ~~~~~~~~ 174 (208)
...+.+..
T Consensus 171 t~~MiE~~ 178 (218)
T KOG0088|consen 171 TAKMIEHS 178 (218)
T ss_pred HHHHHHHh
Confidence 87765543
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7e-32 Score=192.04 Aligned_cols=162 Identities=49% Similarity=0.842 Sum_probs=147.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|++|+|||||++++.++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998877778888777778888888888999999999999999888899999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
+|+++++++.....|+..+........|+++++||.|+.+.......+...++...++.++++|++++.|+++++++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776677999999999999766667777888888888999999999999999999999998
Q ss_pred Hc
Q 028466 169 AL 170 (208)
Q Consensus 169 ~~ 170 (208)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 76
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.9e-32 Score=193.46 Aligned_cols=161 Identities=35% Similarity=0.586 Sum_probs=141.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.||||||++.|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 48999999999999999999999999877777664 45556677788778899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||++++++++.+..|+..+..... .+.|+++|+||.|+.........+...++...+++++++||+++.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 5799999999999976666666677888888888999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 63
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-32 Score=180.87 Aligned_cols=206 Identities=32% Similarity=0.587 Sum_probs=172.7
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
|-+...-+|.+++|.-|+|||+|+.++...+|-..-..++++++....+...+..+++.||||+|+++|+...+.|++.+
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45556789999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
.+.+.|||++.+.++..+-.|+...+....++..+++++||.|+...+.+..+++++++.+.++.|+++|+++|+++++.
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHcC-CCccCCcccccccccccccCCCCC----CCCCCCCCCCCcC
Q 028466 163 FRKIAAALP-GMETLSSTKQEDLVDVNLKSSNTN----TSQSQPQSGGCAC 208 (208)
Q Consensus 163 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~c~~ 208 (208)
|-.-.+.++ ..+..+-.-...-...--+++... ++....++.+|.|
T Consensus 165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 766555543 333333322222222222222211 3455567778988
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=7e-32 Score=193.47 Aligned_cols=163 Identities=38% Similarity=0.647 Sum_probs=146.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-cchhhhhccCCEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i 86 (208)
+.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 35899999999999999999999999888888888888888888888888999999999999886 46788899999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC---CCCHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA---GFNIKAL 162 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~ 162 (208)
+|||+++++++..+..|+..+.... ..+.|+++|+||.|+....++...+...++...++.|+++||++ +.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 9999999999999999998887654 35799999999999987777778888889988889999999999 8899999
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998766
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=5.4e-32 Score=193.15 Aligned_cols=159 Identities=34% Similarity=0.524 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765433 444556677789999999999999998888999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
|++++++++.+..|+..+..... .+.|+++|+||.|+.+.+++...+...++..+++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887776542 568999999999997666677777788888888999999999999999999999
Q ss_pred HHH
Q 028466 167 AAA 169 (208)
Q Consensus 167 ~~~ 169 (208)
..+
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 865
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=5e-32 Score=193.03 Aligned_cols=161 Identities=38% Similarity=0.596 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|++|||||||++++.++.+...+.++.+ +........++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988777767665 333455667777889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|++++++++.+..|+..+..... .+.|+++|+||.|+.+.......++..++..++++++++||+++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 46899999999999776666777888888888999999999999999999999998
Q ss_pred HcC
Q 028466 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 763
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.1e-31 Score=191.24 Aligned_cols=161 Identities=34% Similarity=0.570 Sum_probs=140.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|+|||||+++++++.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999888776666665333 44456777778999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.........+..+++..++++++++||+++.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999976666667778888888889999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 765
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1e-31 Score=190.82 Aligned_cols=160 Identities=32% Similarity=0.562 Sum_probs=138.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999998777777766433 45566777778899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||+++..+++.+..|+..+..... .+.|+++|+||.|+.+ ......+...++..++++++++||+++.|++++|++|.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876643 5789999999999865 45556777888888899999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=9.6e-32 Score=193.33 Aligned_cols=158 Identities=34% Similarity=0.549 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||+.+++.+.+...+.++.. +.....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888875 344455667888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (208)
|++++++|+.+. .|+..+.... .+.|++||+||.|+.+. ..+...++..++.+++. .++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999985 6887776543 57999999999999542 24677888899999984 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028466 156 GFNIKALFRKIAAA 169 (208)
Q Consensus 156 ~~~v~~~~~~l~~~ 169 (208)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.2e-31 Score=195.28 Aligned_cols=160 Identities=34% Similarity=0.559 Sum_probs=137.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|.+|||||||+++|.++.+...+.++.+..+. ..+..++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888765543 44556777789999999999999999988999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcC-CeEEEeecCC
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELN-VMFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~ 155 (208)
|++++++|+.+. .|+..+.... .+.|+++|+||.|+.+.. .+...+...++...+ +.|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999875 5888887654 579999999999996543 234566777887777 6899999999
Q ss_pred CCCHHHHHHHHHHHcC
Q 028466 156 GFNIKALFRKIAAALP 171 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~ 171 (208)
+.|++++|.+|.+.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999885
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.7e-31 Score=189.89 Aligned_cols=159 Identities=30% Similarity=0.546 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||+++++.+.+.+.+.++.+.+........++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777776666667777888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|++++.+++.+..|+..+.... .+.|+++|+||.|+... ...+...++...+++++++||+++.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887543 46899999999998432 1334556666778899999999999999999999987
Q ss_pred cCC
Q 028466 170 LPG 172 (208)
Q Consensus 170 ~~~ 172 (208)
+.+
T Consensus 157 ~~~ 159 (161)
T cd04124 157 AVS 159 (161)
T ss_pred HHh
Confidence 754
No 72
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-34 Score=191.93 Aligned_cols=170 Identities=37% Similarity=0.581 Sum_probs=154.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC---------CeEEEEEEEecCCchhhccchhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~ 77 (208)
..-+|.+.+|.+|||||+|+.++..+.|......++++++..+.+.++ +..+.+.+|||+|+++|++++..
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999888764 24578899999999999999999
Q ss_pred hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
+++++.+++++||+++..+|..+..|+.++..+.- +++.+++++||.|+.+.+.+..+++.+++++++++|+++||.+|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999999987664 67779999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcCCCccC
Q 028466 157 FNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~~ 176 (208)
.||++..+.|...+++.-+.
T Consensus 167 ~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999998887655433
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.2e-31 Score=194.86 Aligned_cols=163 Identities=25% Similarity=0.375 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhcc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 81 (208)
+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||...+.. ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888887666666677888888999999999765422 13345789
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCCCC
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKAGF 157 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 157 (208)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.....+...++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3679999999999997665556666666654 557899999999999
Q ss_pred CHHHHHHHHHHHcCC
Q 028466 158 NIKALFRKIAAALPG 172 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~ 172 (208)
|++++|+.+.+.+..
T Consensus 161 ~v~~lf~~i~~~~~~ 175 (198)
T cd04142 161 HILLLFKELLISATT 175 (198)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988763
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.4e-31 Score=187.04 Aligned_cols=161 Identities=40% Similarity=0.716 Sum_probs=142.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|+++.+...+.++.+.......+...+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887766667666666666777777778999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+......+.|+++|+||.|+....+....++.+.+...+..++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887766679999999999997666777778888888889999999999999999999999876
Q ss_pred c
Q 028466 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.2e-31 Score=187.79 Aligned_cols=160 Identities=37% Similarity=0.608 Sum_probs=139.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+||+++|.+|||||||++++..+ .+...+.++.+.++.......+ +..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5777888888877766666564 46689999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||+++++++..+..|+..+.... .+.|+++|+||.|+.+..+....+...+...++..++++|++++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887664 568999999999997766666666677777788899999999999999999999
Q ss_pred HHHc
Q 028466 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=8.4e-31 Score=197.45 Aligned_cols=161 Identities=29% Similarity=0.482 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||+++|+++.+...+.++.+ ++....+.+++..+.+.||||+|++.|..+...++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999877777775 556667788888899999999999999888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhh---------cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cCCeEEEeecCCCCCH
Q 028466 90 DVASRQSFLNTTKWVEEVRTE---------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNI 159 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~---------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v 159 (208)
|++++++|+.+..|+..+... ...+.|+++|+||+|+...+++...++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224789999999999976566777788777764 3678999999999999
Q ss_pred HHHHHHHHHHcC
Q 028466 160 KALFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|.....
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=4.8e-31 Score=192.89 Aligned_cols=156 Identities=31% Similarity=0.573 Sum_probs=138.7
Q ss_pred EcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh
Q 028466 15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR 94 (208)
Q Consensus 15 vG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (208)
+|..|||||||+++++.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888889998888888888888889999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 95 QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 95 ~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
.+++.+..|+..+.... .+.|+++|+||+|+.. +...... ..++...++.|+++||+++.|++++|++|.+.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998764 5799999999999853 3343333 467777889999999999999999999999888554
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.7e-30 Score=184.63 Aligned_cols=160 Identities=43% Similarity=0.745 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788887777777777777789999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|++++++++.+..|+..+..... .+.|+++|+||.|+. .......+...++...++.++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988877653 678999999999996 3455567788888888999999999999999999999987
Q ss_pred Hc
Q 028466 169 AL 170 (208)
Q Consensus 169 ~~ 170 (208)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 53
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.7e-30 Score=186.37 Aligned_cols=164 Identities=40% Similarity=0.679 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777788887787777888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~ 164 (208)
|++++++++....|...+..... .+.|+++|+||+|+.........+.+.+....+ ..++++|++++.|++++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888887665543 368999999999997555566777788888887 7999999999999999999
Q ss_pred HHHHHcCCC
Q 028466 165 KIAAALPGM 173 (208)
Q Consensus 165 ~l~~~~~~~ 173 (208)
+|.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999877544
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-30 Score=184.53 Aligned_cols=163 Identities=39% Similarity=0.692 Sum_probs=144.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999888877777888878878788888888889999999999999998999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|||++++.+++.+..|+..+......+.|+++|+||.|+....++.....+.+.+.....++++|++++.|++++|++|.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999888776666799999999999976666666666777777778999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 81
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=2.1e-30 Score=183.04 Aligned_cols=159 Identities=51% Similarity=0.877 Sum_probs=144.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|++++++++.+..|+..+........|+++++||+|+.........+.+.++...+.+++++|++++.|+++++++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999988876567999999999999755666788888899888999999999999999999999863
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.1e-30 Score=185.47 Aligned_cols=161 Identities=34% Similarity=0.538 Sum_probs=140.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999999877777776633 356667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l 166 (208)
||++++++++.+..|+..+.... ..+.|+++++||.|+.+.+....++...+++.++ ++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887644 3579999999999997766677777788888887 799999999999999999999
Q ss_pred HHHc
Q 028466 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
...+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8754
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.3e-30 Score=190.18 Aligned_cols=158 Identities=31% Similarity=0.397 Sum_probs=128.5
Q ss_pred ceeEEEEcCCCCcHHHHHH-HhhcCC-----CCCCccceeee-eeeEEE--------EEECCeEEEEEEEecCCchhhcc
Q 028466 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 73 (208)
.+||+++|..|||||||+. ++.++. +...+.|+.+. +..... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4899999999999999996 555443 34556677642 322221 246788899999999999753
Q ss_pred chhhhhccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC-------------------ccCcC
Q 028466 74 LIPSYIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD-------------------KRQVS 133 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~-------------------~~~~~ 133 (208)
....+++++|++|+|||++++++++.+. .|+..+.... .+.|+++|+||.|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4456789999999999999999999986 5888887654 4789999999999853 35678
Q ss_pred HHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 134 IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
..+++++++++++.|+++||+++.||+++|+.+.+.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999999864
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=8.2e-31 Score=187.68 Aligned_cols=162 Identities=23% Similarity=0.291 Sum_probs=138.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.+||+++|.+|||||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5799999999999999999999999998 788888887777777778888788999999999999988999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++++++.+..|+..+... .+.|+++|+||.|+.+.......+...++..++. .++++||+++.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999888888765332 3689999999999965544333445666777776 4799999999999999999
Q ss_pred HHHHcC
Q 028466 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998864
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=1.8e-30 Score=193.27 Aligned_cols=164 Identities=32% Similarity=0.483 Sum_probs=138.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc-cCCEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVI 87 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 87 (208)
+||+++|.+|||||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++.+ ....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 566666655667777788888889999999999822 3344566 9999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
|||++++++++.+..|+..+..... .+.|+++|+||.|+.+..++...+.++++..+++.++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 579999999999997777777777888888889999999999999999999999
Q ss_pred HHHcCCCcc
Q 028466 167 AAALPGMET 175 (208)
Q Consensus 167 ~~~~~~~~~ 175 (208)
.+.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998854333
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=2.1e-30 Score=186.46 Aligned_cols=158 Identities=34% Similarity=0.563 Sum_probs=136.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeC
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV 91 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (208)
|+|+|.+|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999887777765443 44566788888999999999999999999999999999999999
Q ss_pred CChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466 92 ASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETSAKAGF 157 (208)
Q Consensus 92 ~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (208)
+++++++.+. .|+..+.... .+.|+++|+||.|+.+.. .+...++.+++...+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888877654 579999999999986432 2667778889999986 99999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028466 158 NIKALFRKIAAALP 171 (208)
Q Consensus 158 ~v~~~~~~l~~~~~ 171 (208)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=1.3e-30 Score=185.96 Aligned_cols=160 Identities=31% Similarity=0.536 Sum_probs=135.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhccCCEEEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 89 (208)
||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888766666654333 45566778788899999999985 3456777899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC-CCHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG-FNIKALFRKI 166 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~v~~~~~~l 166 (208)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.....+...++..++..++..|+++|++++ .|++++|..|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887654 357999999999999766677778888899999999999999999 5999999999
Q ss_pred HHHcC
Q 028466 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98763
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=2.5e-30 Score=183.01 Aligned_cols=153 Identities=18% Similarity=0.386 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999988766544432 33 46677888888899999999975 34678899999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV--DKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|++++++|+.+..|+..+..... .+.|+++|+||.|+. ..+++...++++++++. ++.|+++||+++.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999887654 568999999999985 34667778888888876 489999999999999999999
Q ss_pred HHHH
Q 028466 166 IAAA 169 (208)
Q Consensus 166 l~~~ 169 (208)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.3e-30 Score=183.59 Aligned_cols=159 Identities=31% Similarity=0.528 Sum_probs=135.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998777766664 334446677888888999999999999999999999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (208)
|++++++++.+. .|+..+... ..+.|+++|+||+|+.+. ..+...++..+++.++. .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999875 577777655 567999999999998543 24556788888888885 799999999
Q ss_pred CCCHHHHHHHHHHHc
Q 028466 156 GFNIKALFRKIAAAL 170 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~ 170 (208)
+.|++++|+.+.+.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=7.6e-30 Score=183.41 Aligned_cols=157 Identities=34% Similarity=0.562 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+|++++|.+|+|||||+.++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888777765 3455556777887889999999999999999988999999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC------------ccCcCHHHHHHHHHHcCC-eEEEeecCC
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD------------KRQVSIEEGEAKARELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 155 (208)
|++++++++.+. .|+..+.... .+.|+++|+||.|+.+ .+.+...++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999874 6887776533 4689999999999853 345677788899999887 999999999
Q ss_pred CCCHHHHHHHHHH
Q 028466 156 GFNIKALFRKIAA 168 (208)
Q Consensus 156 ~~~v~~~~~~l~~ 168 (208)
+.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.8e-32 Score=177.78 Aligned_cols=173 Identities=39% Similarity=0.667 Sum_probs=158.6
Q ss_pred EEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
++|.+++|||+|+-++..+.|. ....+++++++..+.+..++..+++.+|||+|+++|++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999888775 466789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 93 SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 93 ~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+..+|+..+.|+.++..+....+.+.+++||+|+..++.+..++.+.++..++++|+++|+++|.|++..|-.|.+.+..
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999998888888999999999999999999999999999999999999887
Q ss_pred CccCCccccccccc
Q 028466 173 METLSSTKQEDLVD 186 (208)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (208)
.....+...+-..+
T Consensus 162 ~~~~~~~~~~~~~~ 175 (192)
T KOG0083|consen 162 LKMGAPPEGEFADH 175 (192)
T ss_pred hccCCCCCCccccc
Confidence 77776665554333
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.7e-29 Score=178.74 Aligned_cols=161 Identities=35% Similarity=0.571 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++++...+...+.++... ........++..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999998887776666553 33455667888889999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|++++.++.....|+..+..... .+.|+++|+||+|+....+....+.......++++++++|++++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888887643 57999999999999765556677778888888899999999999999999999998
Q ss_pred HcC
Q 028466 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 763
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.1e-29 Score=177.66 Aligned_cols=159 Identities=40% Similarity=0.619 Sum_probs=140.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|++|+|||||++++++..+...+.++.. +.....+..++..+.+.+||+||+..+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5555666677777899999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
+++++++..+..|+..+..... ...|+++|+||+|+.........++..++..++++++++|++++.|+++++++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988887665 579999999999997766677788888888888999999999999999999999875
Q ss_pred c
Q 028466 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.8e-29 Score=184.21 Aligned_cols=162 Identities=31% Similarity=0.505 Sum_probs=134.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 4455567777777899999999999999888889999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD-KRQVSIEEGEAKAR-ELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
++++++++.+..|+..+..... .+.|+++|+||.|+.. ..........+... ..+..++++|+++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 5799999999999865 34444444444433 4567899999999999999999999
Q ss_pred HHcCCC
Q 028466 168 AALPGM 173 (208)
Q Consensus 168 ~~~~~~ 173 (208)
+.+...
T Consensus 160 ~~~~~~ 165 (198)
T cd04147 160 RQANLP 165 (198)
T ss_pred HHhhcc
Confidence 987543
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=183.95 Aligned_cols=164 Identities=38% Similarity=0.607 Sum_probs=152.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|.+|||||+|..++.++.|.+.|.|+++ +.+.+.+.+++..+.+.|+||+|++.|..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 569999999999999999999999999999999998 6677778888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
||++++..||+.+..++..+..... ...|+++|+||+|+...+++..++.+.++..+++.|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955444 567999999999998889999999999999999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998854
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=7.2e-29 Score=179.39 Aligned_cols=162 Identities=35% Similarity=0.502 Sum_probs=138.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888776666654333 455567777788999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
|+++.++++.+..|+..+..... .+.|+++|+||+|+.........+...++..++..++++|++++.|+.+++.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998888876543 56899999999999765566666677777888889999999999999999999999
Q ss_pred HcCC
Q 028466 169 ALPG 172 (208)
Q Consensus 169 ~~~~ 172 (208)
.+..
T Consensus 161 ~~~~ 164 (180)
T cd04137 161 EIEK 164 (180)
T ss_pred HHHH
Confidence 8843
No 97
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.6e-28 Score=182.40 Aligned_cols=172 Identities=31% Similarity=0.571 Sum_probs=149.2
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+.+..+..+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|++.+...+..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 56677888999999999999999999999988888888899998888888888888899999999999999988889999
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
+++++|+|||+++..++..+..|+..+.... .+.|+++++||.|+.+. +... +...++...++.++++|++++.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999998887654 57899999999998542 3322 3345667778899999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028466 161 ALFRKIAAALPGMET 175 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (208)
+.|.+|.+.+...+.
T Consensus 158 ~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 158 KPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999998865444
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.1e-29 Score=180.20 Aligned_cols=155 Identities=21% Similarity=0.347 Sum_probs=123.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|.+|+|||||+++|..+.+.. +.++.+.++. .+.. ..+.+.+|||||++.+...+..+++++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999998877653 4566665543 2333 3478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|||++++.+++....|+..+.... ..+.|++||+||+|+.+. ...+++..+... ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999998888777765432 356899999999998542 345555555421 22468999999999999
Q ss_pred HHHHHHHH
Q 028466 161 ALFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 99
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.3e-28 Score=177.20 Aligned_cols=160 Identities=34% Similarity=0.557 Sum_probs=132.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+.||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 36899999999999999999999998877777776444 34566778888999999999999998888889999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466 89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (208)
||++++++++.+. .|+..+.... .+.|+++|+||.|+.+. ..+...+.++++...+. .++++||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998874 5777776543 47899999999998542 22335667777777764 89999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028466 155 AGFNIKALFRKIAAAL 170 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~ 170 (208)
+|.|++++|++|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=7.6e-29 Score=179.26 Aligned_cols=158 Identities=20% Similarity=0.339 Sum_probs=123.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|..|||||||++++..+.+. .+.++.+.++. .+... .+.+.+||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987775 35677665543 33443 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~ 160 (208)
+|+|+++++++.....++..+.... ..+.|++||+||.|+... ...+++...+.-.. ..++++||++|+|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999998887777765432 257899999999998543 23333333322111 245689999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.+.
T Consensus 168 e~~~~l~~~~~ 178 (181)
T PLN00223 168 EGLDWLSNNIA 178 (181)
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2.6e-29 Score=182.12 Aligned_cols=163 Identities=25% Similarity=0.366 Sum_probs=128.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.+||+++|.+|||||||++++..+.+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++++|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 458999999999999999999998887644 566665555544443 335678999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH--Hc----CCeEEEeecCCCCCH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR--EL----NVMFIETSAKAGFNI 159 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~----~~~~~~~S~~~~~~v 159 (208)
+|+|++++++++....|+..+.... ..+.|+++|+||.|+... ....+...+.. .. ++.++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999989988888887776543 256899999999998542 33334444332 11 246899999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028466 160 KALFRKIAAALPGM 173 (208)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (208)
++++++|.+.+.+.
T Consensus 159 ~~l~~~l~~~l~~~ 172 (183)
T cd04152 159 QEGLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888533
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=8.8e-30 Score=181.49 Aligned_cols=152 Identities=21% Similarity=0.285 Sum_probs=124.6
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeC
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV 91 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (208)
|+++|.+|||||||+++|.++.+...+.++.+.+. ..++...+.+.+||++|++.+...+..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888777777776543 22334457899999999999999999999999999999999
Q ss_pred CChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH----HHHHHHHHHcCCeEEEeecCC------CCCHHH
Q 028466 92 ASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKA------GFNIKA 161 (208)
Q Consensus 92 ~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~v~~ 161 (208)
+++.++.....|+..+.... .+.|+++|+||.|+........ ..+..++.+.++.++++||++ ++||++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999888888876543 5799999999999865543321 223455556678899999998 999999
Q ss_pred HHHHHHH
Q 028466 162 LFRKIAA 168 (208)
Q Consensus 162 ~~~~l~~ 168 (208)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998864
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2e-29 Score=181.50 Aligned_cols=157 Identities=22% Similarity=0.319 Sum_probs=123.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|.+|||||||++++..+.+. .+.++.+.++.. .... .+.+.+||+||++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999877774 356666655432 3333 378999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|||++++++++....|+..+.... ..+.|++||+||.|+.+.. ...++...... ..+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888888775432 3568999999999985432 22333332221 12357789999999999
Q ss_pred HHHHHHHHHc
Q 028466 161 ALFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.4e-28 Score=177.75 Aligned_cols=160 Identities=34% Similarity=0.586 Sum_probs=133.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 36999999999999999999998888776666654443 34556677778899999999998887777788999999999
Q ss_pred EeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcC----------ccCcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466 89 YDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVD----------KRQVSIEEGEAKARELNV-MFIETSAKAG 156 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (208)
||+++.++++.+. .|+..+.... .+.|+++|+||.|+.+ .+.....+...+++..+. .++++||+++
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999985 5888887654 4699999999999853 234456678888888885 8999999999
Q ss_pred CCHHHHHHHHHHHc
Q 028466 157 FNIKALFRKIAAAL 170 (208)
Q Consensus 157 ~~v~~~~~~l~~~~ 170 (208)
.|++++|+++.+.+
T Consensus 159 ~~v~~~f~~l~~~~ 172 (187)
T cd04129 159 EGVDDVFEAATRAA 172 (187)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999877
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1e-28 Score=176.89 Aligned_cols=157 Identities=22% Similarity=0.370 Sum_probs=126.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|||||||+++|.+..+.. +.++.+.++. .+... .+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999887653 5666654443 33343 4789999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC------CeEEEeecCCCCCHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN------VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~ 163 (208)
++++++++.+..|+..+.... ..+.|++||+||.|+.. .....+++.++.... +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888887543 24589999999999853 345566666554222 368899999999999999
Q ss_pred HHHHHHcCCCc
Q 028466 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
++|.+.+.+.+
T Consensus 154 ~~l~~~~~~~~ 164 (169)
T cd04158 154 DWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhhcc
Confidence 99998876543
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=5.2e-28 Score=176.83 Aligned_cols=148 Identities=22% Similarity=0.354 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-----CeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+||+++|..|||||||++++.++.+...+.++++.++....+.++ +..+.+.||||+|++.|..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877766666653 466889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-------------------CCCCeEEEEEeCCCCcCccCcCHH----HHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-------------------GSDVIIVLVGNKTDLVDKRQVSIE----EGEAKA 141 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~iivv~nK~D~~~~~~~~~~----~~~~~~ 141 (208)
+|+|||++++++++.+..|+..+.... ..+.|++||+||.|+.+++..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 246899999999999765444333 345667
Q ss_pred HHcCCeEEEeecCCCC
Q 028466 142 RELNVMFIETSAKAGF 157 (208)
Q Consensus 142 ~~~~~~~~~~S~~~~~ 157 (208)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8889999999998764
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5e-28 Score=173.43 Aligned_cols=157 Identities=37% Similarity=0.590 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|+++.+...+.++.. +.........+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666654 334445567788889999999999988888888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc-----------CcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR-----------QVSIEEGEAKARELNV-MFIETSAKAG 156 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (208)
|+++++++.... .|+..+.... .+.|+++|+||.|+.+.. .+...+...+...++. .++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998854 5666665543 479999999999986544 2346677788888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 028466 157 FNIKALFRKIAA 168 (208)
Q Consensus 157 ~~v~~~~~~l~~ 168 (208)
.|+++++++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=3.3e-29 Score=177.64 Aligned_cols=152 Identities=22% Similarity=0.355 Sum_probs=117.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|||||||++++..+.+. .+.++.+.++. .+... .+.+.+||+||++.+...+..+++++|++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888776 35666665442 23333 478999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~ 163 (208)
|++++.+++....++..+... ...+.|++|++||.|+.+.. ...++..... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877776543 22468999999999985432 2223222221 123457899999999999999
Q ss_pred HHHHH
Q 028466 164 RKIAA 168 (208)
Q Consensus 164 ~~l~~ 168 (208)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.9e-28 Score=175.17 Aligned_cols=155 Identities=23% Similarity=0.351 Sum_probs=123.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987543 44555553 333444543 68999999999999989999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|+++++++.....|+..+... ...+.|+++|+||+|+.+.. ...++..+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999888888777543 23579999999999986432 3445555443 235689999999999999
Q ss_pred HHHHHHHH
Q 028466 161 ALFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|++|..
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=4.6e-28 Score=175.37 Aligned_cols=158 Identities=20% Similarity=0.330 Sum_probs=121.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+++|++|||||||++++..+.+.. +.++.+.++. .+... .+.+.+|||||++.+...+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 356999999999999999999998887764 4566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|+|++++++++....++..+... ...+.|++||+||.|+.+.. ...++...... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888777766433 22468999999999985422 22222222111 12356799999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.+.
T Consensus 168 e~~~~l~~~i~ 178 (182)
T PTZ00133 168 EGLDWLSANIK 178 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 111
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=1.4e-27 Score=171.58 Aligned_cols=145 Identities=70% Similarity=1.080 Sum_probs=130.8
Q ss_pred CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 028466 32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER 111 (208)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 111 (208)
+.|.+.+.+|++.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 46777888999999988888899999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466 112 GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 112 ~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
..+.|++||+||+|+...+.+...++..++..++..|+++||+++.|++++|++|.+.+++.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 56789999999999976667778888888888899999999999999999999999999776544
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.2e-27 Score=169.50 Aligned_cols=159 Identities=26% Similarity=0.384 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|..|+|||||+++|.++.+...+..+.. .......+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988665433221 22333445566789999999999988887888889999999999
Q ss_pred eCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHcC--CeEEEeecCCCCCHHHHHH
Q 028466 90 DVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKARELN--VMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~ 164 (208)
|++++++++.+. .|+..+.... .+.|+++|+||+|+.+..... ..+.......+. ..++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 6777776544 479999999999996554321 223333333332 3799999999999999999
Q ss_pred HHHHHcC
Q 028466 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988764
No 113
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=4e-30 Score=176.83 Aligned_cols=173 Identities=35% Similarity=0.556 Sum_probs=158.3
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
|..-..-+|++|+|..++||||+|.+++.+-|...+-.+++.++....+.++...+...+||++|+++|..+...|++++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 33445789999999999999999999999999999999999999888887877777889999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
.+.++||+-+|..+|+...+|++.+.... ..+|.++|-||+|+.++..+...+++.+++.++..+|-+|+++..|+.++
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 99999999999999999999999998766 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccC
Q 028466 163 FRKIAAALPGMETL 176 (208)
Q Consensus 163 ~~~l~~~~~~~~~~ 176 (208)
|..|.+.+.+....
T Consensus 173 F~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887654433
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=3.3e-27 Score=169.84 Aligned_cols=155 Identities=22% Similarity=0.366 Sum_probs=120.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|.+|+|||||++++..+.+.. +.++.+.++. .+..+. ..+.+||+||++.+...+..+++.+|++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 356899999999999999999999888764 3556554432 334443 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ....++.+.. ...+++++++||++++|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 9999999988888777777665433 256899999999998542 2233332222 2234579999999999999
Q ss_pred HHHHHHHH
Q 028466 161 ALFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999964
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=2.2e-27 Score=168.64 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=116.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+|+++|.+|||||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998764 4455666654332 2333 3468999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~ 161 (208)
|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ..+...... .....++++||+++.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887775532 24799999999999864322 222222211 1124689999999999999
Q ss_pred HHHHHHH
Q 028466 162 LFRKIAA 168 (208)
Q Consensus 162 ~~~~l~~ 168 (208)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=9.2e-27 Score=169.79 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=125.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|++|||||||++++.++.+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988764 345555433 33445554 67899999999999888899999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHH----------------cCCeEE
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARE----------------LNVMFI 149 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (208)
+|+|+++.+++.....++..+..... .+.|+++++||+|+.. .....+++..... ....++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999899888888877765433 5689999999999853 3445666665543 124689
Q ss_pred EeecCCCCCHHHHHHHHHHHc
Q 028466 150 ETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++||++++|++++|++|.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=5.8e-27 Score=167.44 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=119.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|.+|||||||++++.++ +...+.++.+.. ...+...+ +.+.+||+||+..+..++..+++++|++|+|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 655666776644 33444443 679999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHH----HHHHHHHHcC--CeEEEeecCCC------C
Q 028466 91 VASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIE----EGEAKARELN--VMFIETSAKAG------F 157 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~----~~~~~~~~~~--~~~~~~S~~~~------~ 157 (208)
++++.+++.+..|+..+..... .+.|+++|+||.|+......... .+..++.+.+ +.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999888875532 57899999999998654321111 1122222222 46888999998 8
Q ss_pred CHHHHHHHHHH
Q 028466 158 NIKALFRKIAA 168 (208)
Q Consensus 158 ~v~~~~~~l~~ 168 (208)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=3.7e-27 Score=167.25 Aligned_cols=152 Identities=24% Similarity=0.404 Sum_probs=117.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|++|||||||+++|.++.+... .++.+.++. .+.. +..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999887643 455554332 2333 234689999999999999889999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH------HHcCCeEEEeecCCCCCHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA------RELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++++.++.....|+..+.... ..+.|+++|+||.|+.... ...++.... ...+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988988888887776543 2579999999999985322 122232221 1224579999999999999999
Q ss_pred HHHHH
Q 028466 164 RKIAA 168 (208)
Q Consensus 164 ~~l~~ 168 (208)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=7.5e-27 Score=166.76 Aligned_cols=152 Identities=24% Similarity=0.405 Sum_probs=117.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+|+|+|++|+|||||+++|.+... ...+.++.+.+. ..+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 223344444443 3344443 689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-------cCCeEEEeecCCC
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-------LNVMFIETSAKAG 156 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~ 156 (208)
+++|+|+++++++.....++..+.... ..+.|+++++||+|+... ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888887776543 257899999999998543 333444444333 2458999999999
Q ss_pred CCHHHHHHHHHH
Q 028466 157 FNIKALFRKIAA 168 (208)
Q Consensus 157 ~~v~~~~~~l~~ 168 (208)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999965
No 120
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=168.25 Aligned_cols=167 Identities=33% Similarity=0.536 Sum_probs=149.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+..+|++|||...+|||+|+-.+..+.|+..|.|+.. +.+...+..+ ++.+.+.+|||+|+++|.+++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4568999999999999999999999999999999998 6667777784 9999999999999999999887889999999
Q ss_pred EEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEe
Q 028466 86 VIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (208)
+++|++.++++++. ...|+.++..++ +++|+|+|++|.|+..+ ..+...+....+++.| ..|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999 578999888776 78999999999999742 3567888999999999 589999
Q ss_pred ecCCCCCHHHHHHHHHHHcCCCcc
Q 028466 152 SAKAGFNIKALFRKIAAALPGMET 175 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~~~~ 175 (208)
||++..|++++|+.........+.
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999988865554
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=5.8e-26 Score=163.28 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=125.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|..|+|||||++++..+.... ..||.+. ....+.+.+ +.+.+||.+|+..++..|..|+.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~--~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGF--NIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSE--EEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccc--ccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999998765543 4555554 344455655 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------cCCeEEEeecCCCCCH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------LNVMFIETSAKAGFNI 159 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~v 159 (208)
||+|.++++.+.+....+..+.... ..+.|+++++||.|+.+. ....++...... ..+.++.+|+.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 9999999988888887777776543 257999999999998653 334445444332 2346899999999999
Q ss_pred HHHHHHHHHHc
Q 028466 160 KALFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.4e-26 Score=175.19 Aligned_cols=141 Identities=21% Similarity=0.373 Sum_probs=121.8
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-------------eEEEEEEEecCCchhhc
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERFR 72 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~ 72 (208)
....+||+|+|..|||||||+++|.++.+...+.++++.++....+.+++ ..+.+.||||+|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 46789999999999999999999999999888889998887777666642 45789999999999999
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC------------CCCeEEEEEeCCCCcCccC------cCH
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG------------SDVIIVLVGNKTDLVDKRQ------VSI 134 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~iivv~nK~D~~~~~~------~~~ 134 (208)
.++..+++++|++|+|||+++.++++.+..|+..+..... .++|++||+||+|+...+. ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987531 3589999999999965421 357
Q ss_pred HHHHHHHHHcCC
Q 028466 135 EEGEAKARELNV 146 (208)
Q Consensus 135 ~~~~~~~~~~~~ 146 (208)
+++++++.+.++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 899999998874
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.2e-26 Score=163.02 Aligned_cols=151 Identities=21% Similarity=0.323 Sum_probs=113.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+++|||||++++..+.+.. +.++.+.+.. .+.+. ...+.+|||||++.+...+..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777653 3455444332 33333 3689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
++++.++.....++..+.+ ....+.|+++|+||+|+.+.. ...++..... ..+.+++++|++++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888776666655433 222468999999999985432 1222222211 1134699999999999999999
Q ss_pred HHHH
Q 028466 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.6e-26 Score=163.71 Aligned_cols=151 Identities=23% Similarity=0.332 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|||||||++++++..+. .+.++.+... ..+.+.. ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3445554333 3344443 689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+++++++.....++..+.... ..+.|+++|+||+|+.... ..++....... ...+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887776543 3578999999999986533 23333333332 345899999999999999999
Q ss_pred HHHH
Q 028466 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.1e-25 Score=163.34 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=120.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|.+|+|||||++++.++.+.. +.++.+... ..+..++ +++.+||+||+..+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999876643 344443322 2333443 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------------cCCeEEEeec
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------------LNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 153 (208)
+|+|+++++++.....++..+.+.. ..+.|+++|+||.|+.. .....++++...- ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999988887777765432 25689999999999853 3344455444321 1235899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028466 154 KAGFNIKALFRKIAAA 169 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (208)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=2e-25 Score=157.58 Aligned_cols=152 Identities=24% Similarity=0.382 Sum_probs=120.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
.|+++|++|+|||||++++.+..+...+.++.+.+... +...+ +.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999999887777777655543 33333 689999999999999999999999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHH
Q 028466 91 VASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+++++++.....++..+.... ..+.|+++|+||.|+..... ..+..... ....+.++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999888888777777765432 25689999999999864322 22222221 12236789999999999999999
Q ss_pred HHHH
Q 028466 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9975
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=3.2e-25 Score=150.51 Aligned_cols=161 Identities=22% Similarity=0.342 Sum_probs=128.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.++++|+++|..|+||||++++|.+.. .+...|+.+ +..++..+.. +++++||.+|+..++..|..|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 468999999999999999999998776 333345554 5555555655 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCH----HHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSI----EEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
||+|.+|+..+++-...+..+.. ......|++|++||.|+.+.-.... ...+..+.....+++.||+.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999999886666666543 3335689999999999975432221 223445566678999999999999999
Q ss_pred HHHHHHHHcCC
Q 028466 162 LFRKIAAALPG 172 (208)
Q Consensus 162 ~~~~l~~~~~~ 172 (208)
-++||...+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.4e-25 Score=158.35 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=108.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---------chhhhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~ 80 (208)
.+|+++|.+|+|||||+++|.+..+.....+..+.+......... .+.+.+|||||+..... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887743322333333333333333 36899999999742110 0111123
Q ss_pred cCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 81 DSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
.+|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+....+.. ....+....+..++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 3689999999997654 355566777776443 368999999999996543322 24455555567899999999999
Q ss_pred HHHHHHHHHHHc
Q 028466 159 IKALFRKIAAAL 170 (208)
Q Consensus 159 v~~~~~~l~~~~ 170 (208)
+++++++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=5.3e-25 Score=158.97 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=111.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC-------CCCCccc------eeeeeeeEEE--EEE---CCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|..++|||||+++|++.. +...+.+ +.++++.... ..+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 1111111 1122332222 222 5567889999999999999
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---eEE
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---MFI 149 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (208)
..+..+++.+|++|+|+|++++.+......|.... ..++|+++|+||+|+.+.. ......+++..+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999865555555543322 2358899999999985422 12223445555555 489
Q ss_pred EeecCCCCCHHHHHHHHHHHcC
Q 028466 150 ETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
++||++|.|+++++++|.+.++
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999998763
No 130
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1.7e-24 Score=152.48 Aligned_cols=158 Identities=28% Similarity=0.439 Sum_probs=126.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+.++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999988777788888888777777777668899999999999988888889999999999
Q ss_pred EeCCCh-hhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 89 YDVASR-QSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 89 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+.......++++|+.++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999866 5665543 66666665544478999999999996543 22222233333335689999999999999999987
Q ss_pred H
Q 028466 167 A 167 (208)
Q Consensus 167 ~ 167 (208)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=7e-25 Score=156.96 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=112.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchhhh---hccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 83 (208)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+.+. ..+.+|||||+.. +..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999876542222222233333333334432 3799999999642 22223333 45699
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCH
Q 028466 84 VAVIVYDVASR-QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNI 159 (208)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v 159 (208)
++++|+|++++ ++++.+..|+..+..... .+.|+++|+||+|+.+.... ......+.... +.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888766532 36899999999998654433 33444555553 678999999999999
Q ss_pred HHHHHHHHHHc
Q 028466 160 KALFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
+++|++|.+.+
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 132
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.9e-25 Score=171.11 Aligned_cols=162 Identities=16% Similarity=0.135 Sum_probs=121.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
..|+|+|.+|+|||||+++|+.........+..|.......+.+.. ...+.+||+||... ....+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4689999999999999999997654333334445555555555532 24699999999642 222334456789
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
+++|+|+|+++.++++.+..|...+..+.. .+.|+++|+||+|+.+..+......+.++...+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999987788888888888876543 468999999999997554443444555556667899999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=7.6e-25 Score=161.44 Aligned_cols=157 Identities=21% Similarity=0.241 Sum_probs=114.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------hccchhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 77 (208)
...++|+|+|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34589999999999999999999988754333333444444444445443 2799999999732 22221 2
Q ss_pred hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF 157 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (208)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... ...+...+.+++++|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3678999999999998888777767766665544456899999999998654322 13444556789999999999
Q ss_pred CHHHHHHHHHHHc
Q 028466 158 NIKALFRKIAAAL 170 (208)
Q Consensus 158 ~v~~~~~~l~~~~ 170 (208)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 134
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-24 Score=143.90 Aligned_cols=174 Identities=24% Similarity=0.312 Sum_probs=144.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCC--CccceeeeeeeEEEE-EECCeEEEEEEEecCCchhh-ccchhhhhccCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS 83 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 83 (208)
+..|++++|..++|||+++++++.++... ++.+|++. ++...+ +..+..-.+.++||.|...+ ..+...|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 56899999999999999999999776643 45566663 334333 34455568999999997776 557788899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
++++||+..+++||+.+...-..|..... ..+||+|++||.|+.+..++..+.+..|+....+.++++++.++.++-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999987766666655443 67899999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccCCccccc
Q 028466 163 FRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~ 182 (208)
|..+...+...+.++.....
T Consensus 167 f~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHHhccCCcccccCcch
Confidence 99999999888777776655
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=2.8e-24 Score=154.37 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=115.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.+. ..+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999876542 344544333 2333444 57999999999999888888999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~ 160 (208)
+|+|+++..++.....++..+.... ..+.|+++++||.|+..... ..++........ ..++++||++++|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 9999999888887777766654332 24689999999999854322 222222211111 247899999999999
Q ss_pred HHHHHHHH
Q 028466 161 ALFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|+||.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.2e-24 Score=154.71 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.|+++|.+|+|||||+++|++. .+...+.++.+++.....+.+.+ ...+.+|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999999864 33333344555555555555542 357999999999999877777889999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHH---cCCeEEEeecCCCCCHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARE---LNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~ 161 (208)
+|+|+++.. .......+..+. ..+ ..|+++|+||+|+.+... ....+..+.... .+.+++++|++++.|+++
T Consensus 80 ~V~d~~~~~-~~~~~~~~~~~~-~~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 80 LVVAADEGI-MPQTREHLEILE-LLG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEEECCCCc-cHhHHHHHHHHH-HhC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 999998621 111122222222 111 248999999999964321 112344444444 357899999999999999
Q ss_pred HHHHHHH
Q 028466 162 LFRKIAA 168 (208)
Q Consensus 162 ~~~~l~~ 168 (208)
+++.|.+
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998864
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2e-23 Score=155.50 Aligned_cols=167 Identities=43% Similarity=0.615 Sum_probs=136.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+++|+.|+|||||+++|.++.+...+.++.+..+...........+.+.+|||+|++.++..+..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 44599999999999999999999999999999999887777777777666788999999999999999999999999999
Q ss_pred EEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHc---CCeEEE
Q 028466 87 IVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKAREL---NVMFIE 150 (208)
Q Consensus 87 ~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~ 150 (208)
+++|..+..++. ....|...+........|+++|+||+|+.... .............. ...+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 999999854544 47888888887765679999999999997653 22222222222222 334899
Q ss_pred eecC--CCCCHHHHHHHHHHHcCCC
Q 028466 151 TSAK--AGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 151 ~S~~--~~~~v~~~~~~l~~~~~~~ 173 (208)
+|+. ++.+++++|..+...+...
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHh
Confidence 9999 9999999999999888544
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=7.6e-24 Score=151.25 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=110.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+... ...+.+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766554555544444444443 13468999999999999888888899999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH-HHHHHHHH------HcCCeEEEeecCCCCCHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI-EEGEAKAR------ELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~v~~~ 162 (208)
|+++..... ....+..+.. .+.|+++|+||+|+........ ........ ...++++++|+++++|++++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998742211 1112222222 3589999999999864321111 11111111 11357999999999999999
Q ss_pred HHHHHHHcC
Q 028466 163 FRKIAAALP 171 (208)
Q Consensus 163 ~~~l~~~~~ 171 (208)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999988754
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=3e-24 Score=149.40 Aligned_cols=134 Identities=19% Similarity=0.276 Sum_probs=99.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch-----hhccchhhhhccCCEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 85 (208)
||+++|.+|||||||+++|.+..+. +.++.+.+ +. -.+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 23333222 11 1589999972 3433333 57899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 164 (208)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....++.++++...+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887754 2333221 248999999999864 33445666777777776 799999999999999999
Q ss_pred HHH
Q 028466 165 KIA 167 (208)
Q Consensus 165 ~l~ 167 (208)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-24 Score=149.71 Aligned_cols=160 Identities=21% Similarity=0.330 Sum_probs=131.3
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.-++.+|+++|..++||||++.+|..++.... .||++... ..+.+.+ +.+.+||.+|+++++..|..|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 45789999999999999999999988887655 67766444 4455554 7899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEEEeecCCCCCH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v 159 (208)
|||+|.+|++.+.+.+..+..+..+.. .+.|+++++||.|+..... ..++.+..... .-.+..++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999998888888776664 6899999999999976543 33443333333 346888999999999
Q ss_pred HHHHHHHHHHcCC
Q 028466 160 KALFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
.+.++||.+.+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=3.3e-24 Score=149.10 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=109.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhh--cc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI--RD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~ 81 (208)
++|+++|.||||||||+|+|++.+......|..|++.....+.+.+ ..+.++|+||.-... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999987666678888888888888877 579999999943322 2233343 58
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
.|++|+|.|+++.+ .-.....++.. .+.|+++++||+|......... ....+.+.++++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998643 22233333433 3599999999999876544433 46777778899999999999999999
Q ss_pred HHHHH
Q 028466 162 LFRKI 166 (208)
Q Consensus 162 ~~~~l 166 (208)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=3.5e-23 Score=144.52 Aligned_cols=153 Identities=48% Similarity=0.785 Sum_probs=121.4
Q ss_pred EEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466 14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||+..+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44555555 6777777777677789999999999988888888899999999999999
Q ss_pred ChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 93 SRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 93 ~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
++.++..+..|. .........+.|+++|+||+|+.......... .........++++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888877762 22333344679999999999986544333222 3444455568999999999999999999986
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=2e-23 Score=147.54 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=111.8
Q ss_pred EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhhc--cCCEE
Q 028466 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA 85 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~ 85 (208)
|+|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875545556666666666676765 47999999999876642 455554 89999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|+|+++++... .+...+.. .++|+++|+||+|+.+...... ....+...++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998754432 33333332 3589999999999965443332 345666777889999999999999999999
Q ss_pred HHHHc
Q 028466 166 IAAAL 170 (208)
Q Consensus 166 l~~~~ 170 (208)
|.+..
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98764
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=7e-24 Score=155.95 Aligned_cols=155 Identities=24% Similarity=0.272 Sum_probs=105.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC-----------chhhcc
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRS 73 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~ 73 (208)
.+...++|+++|.+|+|||||+++|.+..+.....++.+.+ ...+.+. .+.+||||| ++.++.
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 33467899999999999999999999888765555554433 3333332 589999999 455665
Q ss_pred chhhhhc----cCCEEEEEEeCCChhhHH----------hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHH
Q 028466 74 LIPSYIR----DSSVAVIVYDVASRQSFL----------NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEA 139 (208)
Q Consensus 74 ~~~~~~~----~~d~~i~v~d~~~~~s~~----------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 139 (208)
.+..++. .++++++|+|.++...+. ........+. ..+.|+++|+||+|+.+.. .....+
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~ 152 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDE 152 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHH
Confidence 5555543 457889999986432110 0011112222 2468999999999986433 234444
Q ss_pred HHHHcCC---------eEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 140 KARELNV---------MFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 140 ~~~~~~~---------~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+...++. .++++||++| |+++++++|.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 5555554 4899999999 999999999998754
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=4.1e-23 Score=162.69 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=112.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc---------hhhccchhhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---------ERFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~ 79 (208)
.++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|. +.|...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999999988764444455556666666666433 47999999997 2233222 347
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (208)
.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+... .... ......++++||+++.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCCH
Confidence 8999999999999988777766665555544435689999999999964321 1111 122346899999999999
Q ss_pred HHHHHHHHHH
Q 028466 160 KALFRKIAAA 169 (208)
Q Consensus 160 ~~~~~~l~~~ 169 (208)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=5.9e-23 Score=160.47 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=114.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~ 82 (208)
..|+|+|.+++|||||+++|+.........+..+.......+.+++ ...+.+||+||.... .....+.+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999997654322223334444444444543 247899999997421 22233345679
Q ss_pred CEEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466 83 SVAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF 157 (208)
Q Consensus 83 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (208)
+++++|+|+++. +.++.+..|...+..+.. .+.|+++|+||+|+.+... .....+.+...++..++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 567777777777765432 4689999999999965432 2334455555667889999999999
Q ss_pred CHHHHHHHHHHHc
Q 028466 158 NIKALFRKIAAAL 170 (208)
Q Consensus 158 ~v~~~~~~l~~~~ 170 (208)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=1.1e-22 Score=160.02 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=113.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-ccc-------hhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSL-------IPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~-------~~~ 77 (208)
.+.++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ .++.||||||.... ..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887742 1122233344444455555 46899999998432 221 123
Q ss_pred hhccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAK 154 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~ 154 (208)
++.++|++++|+|..+ ++.... .++..+.. .+.|.++|+||+|+... ...++.+++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4779999999999864 444443 34444432 23567788999998542 2445556655544 579999999
Q ss_pred CCCCHHHHHHHHHHHcCCCccCCcc
Q 028466 155 AGFNIKALFRKIAAALPGMETLSST 179 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~~~~~~~ 179 (208)
+|.|+++++++|.+.+++.+-..+.
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999876554443
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3e-23 Score=151.72 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=101.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc--CCCCCCc------------cceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (208)
-+|+++|.+++|||||+++|+. +.+...+ ..+.+.+.......+....+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223333444444444455789999999999999999
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHH-------cCCe
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARE-------LNVM 147 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 147 (208)
..+++++|++++|+|+++. .......++..+.. .+.|+++|+||+|+..... ....++..+... .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999999863 22223333333332 3588999999999964322 113334444322 3678
Q ss_pred EEEeecCCCCCH
Q 028466 148 FIETSAKAGFNI 159 (208)
Q Consensus 148 ~~~~S~~~~~~v 159 (208)
++++|+++|.|+
T Consensus 159 iv~~Sa~~g~~~ 170 (194)
T cd01891 159 VLYASAKNGWAS 170 (194)
T ss_pred EEEeehhccccc
Confidence 999999999765
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=3.1e-23 Score=149.11 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=108.5
Q ss_pred EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccc---hhhhhccCCEEE
Q 028466 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDSSVAV 86 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~i 86 (208)
++|++|+|||||+++|.+........+..+.+.....+.+.. ...+.+|||||... ...+ ...+++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222223333344444444441 25789999999742 1222 234578899999
Q ss_pred EEEeCCCh------hhHHhHHHHHHHHHhhcC-------CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466 87 IVYDVASR------QSFLNTTKWVEEVRTERG-------SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
+|+|++++ .++.....|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777776654432 36899999999999654433332223344444678999999
Q ss_pred CCCCCHHHHHHHHHHHc
Q 028466 154 KAGFNIKALFRKIAAAL 170 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~ 170 (208)
+++.|++++++++...+
T Consensus 160 ~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 160 KTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhcCHHHHHHHHHhhC
Confidence 99999999999987653
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=9.6e-23 Score=156.16 Aligned_cols=159 Identities=19% Similarity=0.102 Sum_probs=108.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhcc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 81 (208)
+|+|+|.+|+|||||+|+|++.++.. ...+..+.+........++ .++.+|||||...... ....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999887642 2223333332222222222 4699999999754211 23456789
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (208)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... .......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999765543 333333332 3589999999999863222 12233344443343 79999999999999
Q ss_pred HHHHHHHHHcCCCccCC
Q 028466 161 ALFRKIAAALPGMETLS 177 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (208)
+++++|.+.+++.+...
T Consensus 154 ~L~~~l~~~l~~~~~~~ 170 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRY 170 (270)
T ss_pred HHHHHHHHhCCCCCCCC
Confidence 99999999987765433
No 151
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=5.5e-23 Score=150.12 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=105.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC-------CCCCCccceeeeeeeEEEEEEC------------CeEEEEEEEecCCchh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD-------KFDNTYQATIGIDFLSKTMYLE------------DRTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 70 (208)
++|+++|+.++|||||+++|+.. ....+..++.+++.....+.+. ...+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1122223334444433333333 2356899999999987
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHH------
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKAR------ 142 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~------ 142 (208)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+..... ....+.++.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6555555667889999999998643222222221 2222 2478999999999864322 11222322221
Q ss_pred -HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 143 -ELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 143 -~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+++++++|+++++|+++++++|...+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999999875
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.7e-22 Score=141.47 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 80 (208)
++|+++|++|+|||||++++.+.... ....++.+.+.....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987652 22334444455555555554 57899999997654332 234677
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .......+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998766655443322 346899999999999754432 233445789999999999999
Q ss_pred HHHHHHHHHc
Q 028466 161 ALFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.7e-22 Score=165.71 Aligned_cols=176 Identities=19% Similarity=0.180 Sum_probs=119.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 79 (208)
..+|+|+|.+|||||||+|+|++.... ....++.+.+.......+++ ..+.+|||||++. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987643 34455666666666666666 4588999999762 334456678
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCC
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFN 158 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 158 (208)
+.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... ......+ ..+. ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 99999999999997644432 233333332 468999999999985321 1111222 2332 457999999999
Q ss_pred HHHHHHHHHHHcCCCccCCc-ccccccccccccCCCCC
Q 028466 159 IKALFRKIAAALPGMETLSS-TKQEDLVDVNLKSSNTN 195 (208)
Q Consensus 159 v~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 195 (208)
+++++++|.+.+.+...... ......+.+-+.+..++
T Consensus 187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGK 224 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGK 224 (472)
T ss_pred cHHHHHHHHhhcccccccccccccceEEEEECCCCCCH
Confidence 99999999999866322111 12233455555555444
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.3e-22 Score=136.90 Aligned_cols=114 Identities=32% Similarity=0.561 Sum_probs=87.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCC--CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
||+|+|++|||||||+++|.+..+. ..+....+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 12223333444444556666666799999999999888888889999999999
Q ss_pred EeCCChhhHHhHHHH---HHHHHhhcCCCCeEEEEEeCCC
Q 028466 89 YDVASRQSFLNTTKW---VEEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~iivv~nK~D 125 (208)
||++++++++.+.++ +..+... ..+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999987555 4444433 35699999999998
No 155
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=6.5e-23 Score=138.17 Aligned_cols=171 Identities=24% Similarity=0.507 Sum_probs=148.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.-.+||.++|.+..|||||+-.++++.+.+++..+.++.+..+++.+.+..+.+.|||.+|++++..+.+..-+++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 45799999999999999999999999999888899999999999999999999999999999999999998899999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-----CcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-----QVSIEEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
|+||++.+.++..+.+||.+.+......+| |+|++|.|..-.. +.-..+++..++..++.++.+|+....|+++
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999999877766566 5679999974221 2223456777777899999999999999999
Q ss_pred HHHHHHHHcCCCccCCc
Q 028466 162 LFRKIAAALPGMETLSS 178 (208)
Q Consensus 162 ~~~~l~~~~~~~~~~~~ 178 (208)
+|..+...+..++-..+
T Consensus 177 IFK~vlAklFnL~~ti~ 193 (205)
T KOG1673|consen 177 IFKIVLAKLFNLPWTIP 193 (205)
T ss_pred HHHHHHHHHhCCceecc
Confidence 99999988876654443
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=4.3e-22 Score=165.66 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=115.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+..+|+++|+.++|||||+++|.+..+.....++.+.+.....+.+++.. .+.|||||||+.|..++.+.+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 467899999999999999999999888876666666666666666665432 7899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCCC
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 157 (208)
+|+|+++....+ ..+.+ ......++|+++++||+|+.+. ...++...+..++ ..++++||++|.
T Consensus 164 LVVda~dgv~~q-T~e~i---~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQ-TIEAI---SHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHh-HHHHH---HHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 999998632111 11112 2222246899999999998542 2333444433332 469999999999
Q ss_pred CHHHHHHHHHH
Q 028466 158 NIKALFRKIAA 168 (208)
Q Consensus 158 ~v~~~~~~l~~ 168 (208)
|+++++++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=4.9e-22 Score=160.78 Aligned_cols=152 Identities=21% Similarity=0.233 Sum_probs=114.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
..++|+++|.+|+|||||+|+|++... .....++.+.++....+.+++ ..+.+|||||+..+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998754 223345666777777777876 56899999998654432 2356
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....+...++.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 8899999999999987776654 5554432 36899999999998543 12344556677899999998 68
Q ss_pred HHHHHHHHHHHcCCC
Q 028466 159 IKALFRKIAAALPGM 173 (208)
Q Consensus 159 v~~~~~~l~~~~~~~ 173 (208)
++++++.|.+.+.+.
T Consensus 348 I~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 348 IKALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888877543
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.4e-22 Score=163.38 Aligned_cols=149 Identities=25% Similarity=0.279 Sum_probs=113.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
..++|+++|.+|+|||||+|+|++.... ....++.+.++....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999987652 34455666677777777766 56899999998754432 2346
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
+.++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+..++++|++++.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 889999999999998876665433322 3468999999999996533221 23456899999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028466 159 IKALFRKIAAALPG 172 (208)
Q Consensus 159 v~~~~~~l~~~~~~ 172 (208)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998854
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=4.5e-22 Score=144.59 Aligned_cols=155 Identities=25% Similarity=0.268 Sum_probs=110.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCcc----------------ceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
+|+|+|.+|+|||||+++|.+........ .+.+.+......... ...+.+|||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999998776654321 122223333333333 367999999999999888
Q ss_pred hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHH---------
Q 028466 75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKARE--------- 143 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~--------- 143 (208)
+..+++.+|++++|+|++++.... ...++..+.. .+.|+++|+||+|+...... ...++.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 889999999999999998754332 2233333332 46899999999999642221 12233333332
Q ss_pred -----cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 144 -----LNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
...+++++|++++.|+++++++|.+.++
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2468999999999999999999999874
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.3e-22 Score=166.49 Aligned_cols=169 Identities=23% Similarity=0.236 Sum_probs=119.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch----------hhccch-
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI- 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 75 (208)
..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+..++. .+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988652 344566666666666777664 57899999953 232222
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHH-HcCCeEEEee
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAR-ELNVMFIETS 152 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~-~~~~~~~~~S 152 (208)
..+++.+|++|+|+|++++.++.... ++..+. ..+.|+++|+||+|+.+..... ..++..... ...++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999876666543 333333 2468999999999996432110 111222112 2246899999
Q ss_pred cCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466 153 AKAGFNIKALFRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~ 182 (208)
|++|.|++++|+.+.+.+.....+-++.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~l 393 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRIPTGRL 393 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCHHHH
Confidence 999999999999999988766666555443
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=3.1e-22 Score=141.53 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=103.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch----hhccchhhhhccCCEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 86 (208)
+|+++|.+|+|||||++++.+.... . ..+.+ +.+... .+|||||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A-RKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C-ccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998754321 1 12222 122221 269999972 22222233478999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC--eEEEeecCCCCCHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV--MFIETSAKAGFNIKALFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~ 164 (208)
+|+|+++.+++.. .|+..+ ..+.|+++++||.|+.. ........++...+. +++++|+++++|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998765532 333332 23578999999999854 235566777777774 899999999999999999
Q ss_pred HHHHHcCCCccCCcc
Q 028466 165 KIAAALPGMETLSST 179 (208)
Q Consensus 165 ~l~~~~~~~~~~~~~ 179 (208)
.|.+.+.+......+
T Consensus 141 ~l~~~~~~~~~~~~~ 155 (158)
T PRK15467 141 YLASLTKQEEAGEKT 155 (158)
T ss_pred HHHHhchhhhccccc
Confidence 999998766555443
No 162
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=2.7e-23 Score=138.73 Aligned_cols=153 Identities=24% Similarity=0.368 Sum_probs=126.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++.+.++|..++|||||+|.+..+.+.+...|+.+.... ++..+.+.+.+||.||++.|+.+|.+|.+.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 678999999999999999999999998888888875443 3445567899999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--------CCeEEEeecCCCCCH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--------NVMFIETSAKAGFNI 159 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~S~~~~~~v 159 (208)
+|+.+++.+...+..+..+..... .+.|++|++||.|+.++-. . ..+..+. .+-.|.+|+++..|+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 999999988887777777665433 6799999999999976422 2 2222222 245799999999999
Q ss_pred HHHHHHHHHHc
Q 028466 160 KALFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
+-+.+||.+.-
T Consensus 171 d~~~~Wli~hs 181 (186)
T KOG0075|consen 171 DITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=5.8e-22 Score=145.81 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEEEC---------------------------C----
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLE---------------------------D---- 55 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 55 (208)
++|+++|+.|+|||||++.+.+-.. ..+.....++........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 22222222222221111111 0
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--C
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--S 133 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~ 133 (208)
....+.||||||++.|.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1157999999999999888888889999999999998632111222222223222 12578899999999643211 1
Q ss_pred HHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 134 IEEGEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
..+++.++..+ +++++++||++++|+++++++|.+.+++
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 23344444432 5689999999999999999999998865
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=8.4e-22 Score=138.97 Aligned_cols=147 Identities=22% Similarity=0.203 Sum_probs=101.7
Q ss_pred EEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhhhccCC
Q 028466 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (208)
Q Consensus 13 ~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 83 (208)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||+..+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999977531 12233334444444455554 5799999999887543 3445678999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKAL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 162 (208)
++++|+|+.++.+.... .....+. . .+.|+++|+||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~-~--~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLR-K--SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHH-h--cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999865333321 1222222 2 25899999999998654322 223334555 7899999999999999
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
+++|.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.3e-21 Score=163.50 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC-------CCCCcc------ceeeeeeeE--EEEEE---CCeEEEEEEEecCCchhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~~~~ 71 (208)
-+|+++|+.++|||||+++|+... +...+. +..++++.. ..+.+ ++..+.++||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 589999999999999999998542 111111 122333333 33333 456689999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---eE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---MF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (208)
...+..+++.+|++|+|+|+++..+......|...+. .+.|+++|+||+|+..... .....++...++. .+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcceE
Confidence 9999999999999999999998655555555544332 3578999999999854321 2222344444554 48
Q ss_pred EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 149 IETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+++||++|.|+++++++|.+.++..
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999988654
No 166
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.6e-21 Score=154.98 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=114.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccc---hhhhhccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d 83 (208)
.|+|+|.+|+|||||+++|++........+..+.......+.++. ...+.+||+||... ...+ ....+..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999997764322234444444444444441 24799999999642 1122 233456699
Q ss_pred EEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 84 VAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++|+|+|+++. +.++....|...+..+.. .+.|++||+||+|+... ...++.+...++.+++++||++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 566666777777665432 46899999999998422 3344556666667899999999999
Q ss_pred HHHHHHHHHHHcCCCcc
Q 028466 159 IKALFRKIAAALPGMET 175 (208)
Q Consensus 159 v~~~~~~l~~~~~~~~~ 175 (208)
+++++++|.+.+...+.
T Consensus 315 I~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 315 LDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999998866543
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=9.8e-22 Score=158.24 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=111.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh--ccch------hhhhcc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~ 81 (208)
.+|+|+|.+|+|||||+|+|++........++.+.+.....+.+.+.. .+.+|||+|.... ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999999877654444555666665566565432 6889999997321 1112 234689
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~ 160 (208)
+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999987777765554444443335689999999999864311 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
+++++|.+.+.
T Consensus 352 eL~e~I~~~l~ 362 (426)
T PRK11058 352 LLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2e-21 Score=157.60 Aligned_cols=164 Identities=18% Similarity=0.101 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
..|+|||.+|+|||||+++|++........+..|+......+.+.+ ..+.+||+||... ......+.+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999997665433345555555555565655 5799999999532 111234456789
Q ss_pred CEEEEEEeCCCh----hhHHhHHHHHHHHHhhc-----------CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466 83 SVAVIVYDVASR----QSFLNTTKWVEEVRTER-----------GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM 147 (208)
Q Consensus 83 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
|++|+|+|+++. +.+..+..+...+..+. ..+.|+|||+||+|+.+..+. ...........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999753 23444444444443322 236899999999999654332 22333344455789
Q ss_pred EEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466 148 FIETSAKAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
++++|+++++|+++++.+|.+.+...+..
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999998776543
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.1e-21 Score=142.10 Aligned_cols=160 Identities=23% Similarity=0.206 Sum_probs=105.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc----------hhhccch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (208)
....++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345689999999999999999999987654343444333222222222 257999999994 3344444
Q ss_pred hhhhccC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHHHcCCeEEE
Q 028466 76 PSYIRDS---SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKARELNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (208)
..+++.. +++++|+|++++..... .++..+... .+.|+++++||.|+.+..+.. ..++..........+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 5555544 67888999876433222 111122222 358899999999986543221 22344444444678999
Q ss_pred eecCCCCCHHHHHHHHHHHcCC
Q 028466 151 TSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+|++++.|++++++.|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988753
No 170
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=153.81 Aligned_cols=177 Identities=18% Similarity=0.137 Sum_probs=130.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchhhhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~ 79 (208)
..|+|+|.||||||||+|+|++.... .+..|+.|.|..+....+.+. .+.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 68999999999999999999988774 456788888888888888874 5999999996632 22445568
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (208)
..||++|||+|... ......+.+..+.. ..++|+++|+||+|-... ....-++........+.+||..|.|+
T Consensus 82 ~eADvilfvVD~~~--Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGRE--GITPADEEIAKILR--RSKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCC--CCCHHHHHHHHHHH--hcCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEeehhhccCH
Confidence 89999999999874 23333333333333 235999999999997421 22223333333358999999999999
Q ss_pred HHHHHHHHHHcCCCccCCccc---ccccccccccCCCCCCC
Q 028466 160 KALFRKIAAALPGMETLSSTK---QEDLVDVNLKSSNTNTS 197 (208)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 197 (208)
.++++.+.+.++ ........ +.-++++-++++.+++|
T Consensus 154 ~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs 193 (444)
T COG1160 154 GDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS 193 (444)
T ss_pred HHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence 999999999986 33332222 45788888998888754
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=2.1e-21 Score=162.16 Aligned_cols=157 Identities=21% Similarity=0.229 Sum_probs=120.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc---CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY---DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.|+++|+.++|||||+++|++ ..+++++.++++++.....+..++ ..+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999996 344556667778787777777766 68999999999999998888999999999
Q ss_pred EEEeCCC---hhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc--CHHHHHHHHHHc----CCeEEEeecCCC
Q 028466 87 IVYDVAS---RQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV--SIEEGEAKAREL----NVMFIETSAKAG 156 (208)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~ 156 (208)
+|+|+++ +++.+. +..+. . .++| +++|+||+|+.+.... ...+++.++..+ +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~eh----l~il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEH----LAVLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHH----HHHHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 333332 22222 2 2466 9999999999654322 133445555544 478999999999
Q ss_pred CCHHHHHHHHHHHcCCCcc
Q 028466 157 FNIKALFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~ 175 (208)
.|++++++.|.+.+.....
T Consensus 152 ~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCchhHHHHHHHHHHhCCC
Confidence 9999999999888766544
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2e-21 Score=158.52 Aligned_cols=173 Identities=20% Similarity=0.173 Sum_probs=116.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (208)
++|+|+|.+|||||||+|+|.+.... ....+..+.+.......+++ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345556666666666766 6799999999876 2333456788
Q ss_pred cCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCC
Q 028466 81 DSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGF 157 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 157 (208)
.+|++|+|+|+.++.+.. .+..|+. . .+.|+++|+||+|..+. ...... +..++. .++++||.++.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~----~--~~~piilv~NK~D~~~~----~~~~~~-~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR----K--SNKPVILVVNKVDGPDE----EADAYE-FYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH----H--cCCcEEEEEECccCccc----hhhHHH-HHhcCCCCCEEEEeeCCC
Confidence 999999999998642222 2333332 2 25899999999997431 112222 234555 58999999999
Q ss_pred CHHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466 158 NIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN 195 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
|++++++.|................-.+.+-+.+..++
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GK 186 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGK 186 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCH
Confidence 99999999998543322211122233455555555444
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.9e-21 Score=164.39 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=114.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+...|+|+|+.++|||||+++|....+.....++++.+.....+.+++ ..++||||||++.|..++.+++..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 5678999999999999999999998877665556666666555666655 57999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHH-------HHHcC--CeEEEeecCCCC
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAK-------ARELN--VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S~~~~~ 157 (208)
+|+|+++.-...... .+......++|+||++||+|+.... ..++... ...++ ++++++||++|.
T Consensus 366 LVVdAddGv~~qT~e----~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIE----AINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHH----HHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 999998631111111 1222223468999999999995431 2222221 22223 689999999999
Q ss_pred CHHHHHHHHHHH
Q 028466 158 NIKALFRKIAAA 169 (208)
Q Consensus 158 ~v~~~~~~l~~~ 169 (208)
|+++++++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999999864
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.2e-21 Score=152.97 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=115.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 83 (208)
.|+|||.+|+|||||+|+|++.+......+..|.......+.+... ..+.++||||...- .......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 6999999999999999999977654344455555555555555432 35999999996531 122334578899
Q ss_pred EEEEEEeCC---ChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCC
Q 028466 84 VAVIVYDVA---SRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAG 156 (208)
Q Consensus 84 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 156 (208)
++++|+|++ +.+.++....|+..+..... .+.|+++|+||+|+....+. ...+..+....+ ..++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 44566666677776665432 35899999999998643322 233344444433 47899999999
Q ss_pred CCHHHHHHHHHHHcCCCcc
Q 028466 157 FNIKALFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~ 175 (208)
.|++++++.|.+.+++.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPR 337 (390)
T ss_pred cCHHHHHHHHHHHhhhCcc
Confidence 9999999999999876544
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=6.3e-21 Score=136.52 Aligned_cols=155 Identities=22% Similarity=0.262 Sum_probs=104.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------chh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 76 (208)
.++|+++|.+|+|||||+++|++.... ....+..+.......+..++ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 489999999999999999999987642 22233444444444455554 3588999999654311 112
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-Hc----CCeEEEe
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-EL----NVMFIET 151 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~ 151 (208)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+............+... .+ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 346789999999999987554432 22222222 358999999999986543222333233332 22 3689999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q 028466 152 SAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~ 169 (208)
|++++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998865
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=3.3e-21 Score=162.75 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=113.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEE--EEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.+..+|+|+|+.++|||||+++|....+.....++.+.+.... .+..++....++||||||++.|..++.+++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3668999999999999999999998877655555554443333 33333445789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-------HcC--CeEEEeecCC
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-------ELN--VMFIETSAKA 155 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~S~~~ 155 (208)
+|+|+|+++.-....... +..+ ...+.|+||++||+|+.... ..++...+. .++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 999999986322211111 1222 23468999999999986432 223322222 223 6899999999
Q ss_pred CCCHHHHHHHHHHHc
Q 028466 156 GFNIKALFRKIAAAL 170 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~ 170 (208)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998764
No 177
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6e-21 Score=126.57 Aligned_cols=158 Identities=25% Similarity=0.393 Sum_probs=126.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
-++++|+.+|..++||||++..|..+... ...||.+ +...++.+.+ ..+++||.+|++..+..|..|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 46899999999999999999999876643 3356655 4555555655 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (208)
||+|..+.+.+++.+..+..+.++.. .+.|++|.+||.|+..+.. ..++..... ....-+.++++.+++|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999988888888877777765544 6789999999999976543 334433332 223457899999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
+-|.||...+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999988764
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.8e-21 Score=141.69 Aligned_cols=160 Identities=24% Similarity=0.319 Sum_probs=108.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC------------------CCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+.++|+++|+.++|||||+++|+..... .+.....+++.....+........++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999844321 1112233344444444411333689999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHH-HHHHHc---
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGE-AKAREL--- 144 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 144 (208)
.|.......+..+|++|+|+|+.++-. ....+.+..+.. .+.|+++|+||+|+...+- ....++. .+.+.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 999999999999999999999985422 122333333333 3588999999999972211 1112222 232333
Q ss_pred ---CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 145 ---NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.++++++|+++|.|++++++.|.+.++
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999999875
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.9e-21 Score=155.16 Aligned_cols=165 Identities=21% Similarity=0.198 Sum_probs=113.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-----------h
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (208)
..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++ ..+.+|||||+..+... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987642 23345555555555555655 36899999997544322 1
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEE
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 150 (208)
..+++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+. .....+....... .++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 34678999999999999765544432 2222222 36899999999999621 1112222222222 1468999
Q ss_pred eecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466 151 TSAKAGFNIKALFRKIAAALPGMETLSST 179 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~ 179 (208)
+||++|.|++++|+++.+.+.......++
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 99999999999999999887655444433
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=9.8e-21 Score=146.82 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=108.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhc--------cchhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~ 77 (208)
++.-.|+|+|.+|+|||||+|+|++....... .+..+..........+ ..++.+|||||..... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 35567999999999999999999988764322 2222222222222222 2689999999965432 23344
Q ss_pred hhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~ 155 (208)
.+..+|++++|+|++++ +.....++ ..+. ..+.|+++|+||+|+.............+....+ ..++++|+++
T Consensus 81 ~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 81 SLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred HHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 67899999999999872 22222222 2222 2358999999999996332222334444444333 6899999999
Q ss_pred CCCHHHHHHHHHHHcCCCccC
Q 028466 156 GFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~~~~ 176 (208)
+.|+++++++|.+.+++.+..
T Consensus 156 ~~gv~~L~~~L~~~l~~~~~~ 176 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGPPY 176 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCCC
Confidence 999999999999998765543
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.5e-20 Score=138.21 Aligned_cols=117 Identities=20% Similarity=0.366 Sum_probs=88.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC-CEEEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVIVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 89 (208)
+|+++|++|+|||+|+++|..+.+...+.++ +...........+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998876654433 2222222222113346799999999999999888899998 9999999
Q ss_pred eCCCh-hhHHhHHHHHHHHHhh---cCCCCeEEEEEeCCCCcC
Q 028466 90 DVASR-QSFLNTTKWVEEVRTE---RGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 90 d~~~~-~s~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~ 128 (208)
|+.+. .++.....|+..+... .....|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6777766666555432 225799999999999854
No 182
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=143.10 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-eeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~ 76 (208)
.++---|+++|.||+|||||+|++++.+..-...... |.......++.+ ..++.|+||||...-.+ ...
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 4566789999999999999999999998854333333 333333333333 36899999999554333 334
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEEEeec
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFIETSA 153 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~ 153 (208)
..+..+|+++||+|+.++ +..-.+++ +.+.. .+.|+++++||+|........ ....+..... +..++++||
T Consensus 81 ~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 81 SALKDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred HHhccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeec
Confidence 457899999999999853 32233333 33332 357999999999987654421 2333333322 358999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCccCCcccc
Q 028466 154 KAGFNIKALFRKIAAALPGMETLSSTKQ 181 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 181 (208)
+.+.|++.+.+.+...+++.+...+...
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 9999999999999999988876665543
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.4e-20 Score=133.78 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=102.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc--------chhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~ 78 (208)
...+|+++|++|+|||||++++.+........ +..+....... .......+.+|||||...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 45899999999999999999999876532221 11111111111 222235799999999654322 33445
Q ss_pred hccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAG 156 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~ 156 (208)
+..+|++++|+|++++ +... ..+...+.. .+.|+++|+||.|+....+............. ..+++++|++++
T Consensus 80 ~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 80 LKDVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred HHhCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence 7889999999999976 2222 222232322 25889999999999643332233334444444 368999999999
Q ss_pred CCHHHHHHHHHHHc
Q 028466 157 FNIKALFRKIAAAL 170 (208)
Q Consensus 157 ~~v~~~~~~l~~~~ 170 (208)
.|+++++++|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=7.5e-21 Score=154.93 Aligned_cols=153 Identities=23% Similarity=0.223 Sum_probs=110.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc--------hhhccchhhhhcc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD 81 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 81 (208)
+|+|+|.+|||||||+|+|++.... ....++.+.+.......+++ ..+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345566666666666666 46999999996 3445556677899
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (208)
+|++++|+|+.++-.... ..+...+.. .+.|+++|+||+|+...... . ..+..++. .++++||.++.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999986422221 112222222 25899999999998643321 1 22345565 79999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028466 161 ALFRKIAAALPGME 174 (208)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (208)
++++++.+.+....
T Consensus 150 ~ll~~i~~~l~~~~ 163 (429)
T TIGR03594 150 DLLDAILELLPEEE 163 (429)
T ss_pred HHHHHHHHhcCccc
Confidence 99999999986643
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=1.3e-20 Score=157.65 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=112.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC--CC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCchh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK--FD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQER 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~ 70 (208)
--+++|+|+.++|||||+++|+... .. .+..+..++......+.+ ++..+.+++|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999997521 10 011223333332333333 45568899999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---e
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV---M 147 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 147 (208)
|...+..++..+|++|+|+|+++.........|.... ..+.|+++|+||+|+..... .....++...+++ .
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcce
Confidence 9999999999999999999999764444444443322 13688999999999854321 1122333333454 3
Q ss_pred EEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 148 FIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
++++||++|.|+++++++|.+.++..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999988654
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1.2e-20 Score=136.35 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=96.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch----------hhccch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 75 (208)
..+.++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35679999999999999999999998764333333333222222233332 58999999953 344444
Q ss_pred hhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHHHcC--CeE
Q 028466 76 PSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKARELN--VMF 148 (208)
Q Consensus 76 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~~~ 148 (208)
..+++. +|++++|+|++++-+.... .++..+.. .+.|+++++||+|+.+.. +....+++..+...+ ..+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 455553 5899999999864333322 22222322 358999999999986432 223445555555554 479
Q ss_pred EEeecCCCCCHH
Q 028466 149 IETSAKAGFNIK 160 (208)
Q Consensus 149 ~~~S~~~~~~v~ 160 (208)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999973
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=4.5e-20 Score=157.78 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=115.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----------hh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~ 76 (208)
|+.++|+++|.+|||||||+|+|++........+..+++.....+..+ ..++.+|||||+..+... ..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHH
Confidence 456899999999999999999999876644445666665555555444 367999999998766432 12
Q ss_pred hhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466 77 SYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (208)
.++ ..+|++++|+|+++.+... .+..++.+ .+.|+++++||+|+.+.... ....+++.+.++++++++|+.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEee
Confidence 232 4789999999998754432 23333332 35899999999998654443 345677778889999999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028466 155 AGFNIKALFRKIAAAL 170 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~ 170 (208)
+++|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999998765
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.8e-20 Score=156.71 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=111.4
Q ss_pred cCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhh--ccCCEEEE
Q 028466 16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVI 87 (208)
Q Consensus 16 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 87 (208)
|.+|||||||+|++++........++.+.+.....+.+++ .++.+|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998877555667777777777777766 45899999999876553 23333 37899999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|+|+++.+.. ..+..++. ..+.|+++|+||+|+.+..... .+.+.+.+.++++++++|+++++|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999864322 22222222 2468999999999986544443 346777788899999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=3.4e-20 Score=158.73 Aligned_cols=154 Identities=20% Similarity=0.172 Sum_probs=108.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------hccchhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 78 (208)
...+|+|+|.+|||||||+|+|++.... ....++.+.+.......+++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3478999999999999999999987642 23345666666655556655 4689999999763 33444567
Q ss_pred hccCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAG 156 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 156 (208)
+..+|++|+|+|+++. +.... .|...+.. .+.|+++|+||+|+.... .....+ ...+. ..+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCC
Confidence 8899999999999753 22222 33333332 468999999999985321 111222 12232 4679999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028466 157 FNIKALFRKIAAALPGM 173 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~ 173 (208)
.|+.+++++|.+.+...
T Consensus 422 ~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 422 RGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCchHHHHHHHHhcccc
Confidence 99999999999998653
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=1.5e-20 Score=152.77 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=105.9
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCC-------------------------------CCCccceeeeeeeEEEEEE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL 53 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (208)
+..+.++|+++|+.++|||||+++|+...- .++..+..+++.....+..
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 445679999999999999999999973211 1223455566666555555
Q ss_pred CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--
Q 028466 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-- 131 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-- 131 (208)
++ +.+.+|||||++.|.......+..+|++++|+|++++.++.....+...+....+ ..++++++||+|+.+..+
T Consensus 82 ~~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 82 DK--YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred CC--eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHH
Confidence 44 6899999999998887766778899999999999863123222222222222222 246899999999964221
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHHH
Q 028466 132 --VSIEEGEAKARELN-----VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 163 (208)
....++..++...+ ++++++||++|+|+++..
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555444 479999999999998743
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=3.1e-20 Score=130.82 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=104.4
Q ss_pred EEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chhhhhccCCEE
Q 028466 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSSVA 85 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~ 85 (208)
|+|+.|+|||||++++.+.... .......+............ ...+.+||+||...+.. ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999977554 33333333333333333332 35799999999776543 334578899999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
++|+|++++....... +..... ..+.|+++|+||.|+......... .........+.+++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876555543 222222 246899999999998754332221 112223334578999999999999999
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
+++|.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 192
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=4.5e-20 Score=149.88 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=106.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhc--CCC-----------------------------CCCccceeeeeeeEEEEEEC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKF-----------------------------DNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (208)
+.+.++|+++|+.++|||||+++|+. +.. ..+..++.+++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34579999999999999999999974 211 11233455666666555554
Q ss_pred CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-
Q 028466 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ- 131 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~- 131 (208)
+ +.+.||||||++.|.......+..+|++|+|+|++++++... ...++ .+....+ ..+++|++||+|+.+..+
T Consensus 84 ~--~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 K--YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred C--eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC-CCeEEEEEEChhccCccHH
Confidence 4 689999999999988777777899999999999998643211 11111 2222222 357899999999964222
Q ss_pred ---cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466 132 ---VSIEEGEAKARELN-----VMFIETSAKAGFNIKAL 162 (208)
Q Consensus 132 ---~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 162 (208)
....++..++...+ ++++++||+++.|+.+.
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 11345556666554 57999999999999863
No 193
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=130.46 Aligned_cols=172 Identities=32% Similarity=0.554 Sum_probs=144.8
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (208)
.|......++++++|..|.||||++++++.+.|...+.++.+.....-.+.-+.+.+++..|||.|++.+..+...++-+
T Consensus 3 ~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 3 SPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred CCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence 34444568999999999999999999999999999999999988877776665556899999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
+...|++||+...-.+..+..|...+.... .++||++++||.|... ++ .......+.+..++.+|++|++.+-|++.
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-r~-~k~k~v~~~rkknl~y~~iSaksn~Nfek 159 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-RK-VKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-cc-cccccceeeecccceeEEeeccccccccc
Confidence 999999999998888888999999988776 4699999999999743 22 12333444555678999999999999999
Q ss_pred HHHHHHHHcCCCccC
Q 028466 162 LFRKIAAALPGMETL 176 (208)
Q Consensus 162 ~~~~l~~~~~~~~~~ 176 (208)
.|-|+.+.+.+.+..
T Consensus 160 PFl~LarKl~G~p~L 174 (216)
T KOG0096|consen 160 PFLWLARKLTGDPSL 174 (216)
T ss_pred chHHHhhhhcCCCCe
Confidence 999999998765543
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.2e-19 Score=146.56 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=110.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------ch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~ 75 (208)
..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+..++ ..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999997653 233445555555555555555 4688999999643221 12
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-H----cCCeEEE
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-E----LNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 150 (208)
..+++.+|++|+|+|++++.+.... .+...+.. .+.|+++|+||+|+.+... ..+...... . ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 3467899999999999976444433 22222222 3589999999999863321 122222222 1 2478999
Q ss_pred eecCCCCCHHHHHHHHHHHcCCCccC
Q 028466 151 TSAKAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
+||+++.|++++++.+.+.+.....+
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~ 349 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRR 349 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCc
Confidence 99999999999999998876544433
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.1e-19 Score=155.65 Aligned_cols=165 Identities=22% Similarity=0.259 Sum_probs=115.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccc-h
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 75 (208)
..++|+++|.+|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988752 233455566666666667664 477999999532 2221 1
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-Hc----CCeEEE
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-EL----NVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~ 150 (208)
..+++.+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+... ....+.... .+ ..++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 33478999999999999876665543 2333322 4689999999999965322 122222222 11 356799
Q ss_pred eecCCCCCHHHHHHHHHHHcCCCccCCccc
Q 028466 151 TSAKAGFNIKALFRKIAAALPGMETLSSTK 180 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~ 180 (208)
+||++|.|++++++.+.+.+.....+-++.
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~ 630 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTG 630 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChH
Confidence 999999999999999999987666555553
No 196
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.6e-20 Score=127.98 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=123.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC---CC----CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD---KF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (208)
.-..+.++|+|..++|||||+.++... .+ +..-.++.+.......+. + ..+.+||.+|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~--~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--N--APLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--c--ceeEEEEcCChHHHHHHHHHH
Confidence 345689999999999999999987532 11 223345555555554443 3 469999999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHH-HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH------HcCCeEEEe
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEV-RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR------ELNVMFIET 151 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~ 151 (208)
+..+|++|+++|+++++.|+.....+..+ .+..-.++|+++.+||.|+.... ..++++.... +...++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999998866655554 34444789999999999985442 2334433333 123579999
Q ss_pred ecCCCCCHHHHHHHHHHHcCCC
Q 028466 152 SAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
|+.+|+||++-..|+...+.+.
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999998765
No 197
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=1.4e-19 Score=145.95 Aligned_cols=163 Identities=22% Similarity=0.189 Sum_probs=109.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEE--------------E----CC------eEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMY--------------L----ED------RTVR 59 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~--------------~----~~------~~~~ 59 (208)
++.++|+++|+.++|||||+++|.+... .++..+..+++.....+. . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4579999999999999999999975322 122222233222211110 0 11 1357
Q ss_pred EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHH
Q 028466 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEG 137 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~ 137 (208)
+.+|||||++.|...+......+|++++|+|++++....+..+.+..+. ..+ ..++++++||+|+.+.... ...++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 9999999999999888888889999999999986421222333333332 221 2568899999999653221 12344
Q ss_pred HHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 138 EAKAREL---NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+.... +++++++|+++++|+++++++|...++
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444443 568999999999999999999998765
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.1e-19 Score=123.17 Aligned_cols=158 Identities=21% Similarity=0.284 Sum_probs=118.8
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCC--------CCc----cceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------NTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
...+.+.||+|.|+.++||||+++++...... .++ ..|...++....... ...++++|||||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~---~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE---DTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC---cceEEEecCCCcHHH
Confidence 45678999999999999999999999876531 111 123334444444322 246899999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFI 149 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (208)
..+|..+.++++++|+++|.+.+..+ +....+.-+.... .+|++|.+||.|+..... .+.+++..... .++.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCcee
Confidence 99999999999999999999988777 4444444443332 299999999999976543 33444444433 78999
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q 028466 150 ETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~ 169 (208)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999998877
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.6e-19 Score=148.96 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=104.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------------CeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~ 71 (208)
+..-|+++|++++|||||+++|.+..+......+.+.+.....+..+ .....+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999999887754433323222211111111 00123889999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc------------CHHH
Q 028466 72 RSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV------------SIEE 136 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------~~~~ 136 (208)
..++..+++.+|++++|+|+++ +++++.+. .+. ..+.|+++++||+|+.+.... ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999986 34443332 122 136899999999999642110 0000
Q ss_pred H------------HHHHH------------Hc--CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 137 G------------EAKAR------------EL--NVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 137 ~------------~~~~~------------~~--~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
+ .++.. ++ .++++++||++|+|+++++.+|....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 01110 11 25899999999999999999987543
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=141.22 Aligned_cols=154 Identities=24% Similarity=0.273 Sum_probs=117.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 78 (208)
..++++++|.||+|||||+|.|++.... .+..++.|.|.....+.+++ +.+.++||+|..+-...+ ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4689999999999999999999987663 46678888999999999988 789999999976544433 334
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
+.++|.+++|+|++.+.+-... ..+. ....++|+++|.||.|+......... ....+..++.+|+++++|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 7899999999999975221111 1111 23356899999999999765432111 112234689999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028466 159 IKALFRKIAAALPGM 173 (208)
Q Consensus 159 v~~~~~~l~~~~~~~ 173 (208)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998665
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=1.7e-19 Score=133.17 Aligned_cols=148 Identities=23% Similarity=0.279 Sum_probs=97.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCC-------------------------------CCccceeeeeeeEEEEEECCeEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR 59 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (208)
+|+|+|++|+|||||+++|+...-. .+..+..+++.....+.+.+ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 6899999999999999999743211 11124444555444444444 57
Q ss_pred EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc----CHH
Q 028466 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV----SIE 135 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~ 135 (208)
+.+|||||+..|...+...+..+|++|+|+|++++.. ........ +....+ ..++|+|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~-~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSY-ILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHH-HHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8999999999887777777899999999999986421 11112112 222221 2457888999998643221 123
Q ss_pred HHHHHHHHcC---CeEEEeecCCCCCHHHHH
Q 028466 136 EGEAKARELN---VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 136 ~~~~~~~~~~---~~~~~~S~~~~~~v~~~~ 163 (208)
+++.++..++ .+++++||+++.|+.+..
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 4444555555 358999999999988543
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=1.2e-18 Score=130.45 Aligned_cols=152 Identities=21% Similarity=0.250 Sum_probs=103.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-------cchhhhhccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (208)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+.+||+||..... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333334444455555555655 579999999975322 23345789999
Q ss_pred EEEEEEeCCChh-hHHhHHHHHHH----------------------------------------HHhhc-----------
Q 028466 84 VAVIVYDVASRQ-SFLNTTKWVEE----------------------------------------VRTER----------- 111 (208)
Q Consensus 84 ~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~~~~----------- 111 (208)
++++|+|+++++ ....+...+.. +....
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 22222222211 11000
Q ss_pred --------------CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 112 --------------GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 112 --------------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
....|+++|+||+|+.. ..+...++.. ..++++||+++.|++++++.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 12368899999999853 2333344433 35899999999999999999998763
No 203
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=9.5e-20 Score=121.07 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=120.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+++|-.++|||||+.+|.+.... ...|+.+ +....+..++ .+++++||.+|+...+..|..|+.++|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 57899999999999999999999765542 2344444 4455555544 368999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH---HcCCeEEEeecCCCCCHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR---ELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~~v~~~ 162 (208)
+|+|.+|...|+++-+.+..+.... ...+|+++.+||.|+.-+........+.-.. ..-..+-++|+.+++|+..-
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 9999999888988766666665443 3679999999999986443332222211111 11246788999999999999
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
.+|+....
T Consensus 171 ~~wv~sn~ 178 (185)
T KOG0074|consen 171 SDWVQSNP 178 (185)
T ss_pred chhhhcCC
Confidence 98887654
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=4.8e-19 Score=142.76 Aligned_cols=165 Identities=21% Similarity=0.211 Sum_probs=107.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCC---CCCCccceeeeeeeEEEEEE------------------C------CeEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYL------------------E------DRTV 58 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~------------------~------~~~~ 58 (208)
..+.++|+++|+.++|||||+.+|.+.. ..++..+..+++.....+.+ + +...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3457999999999999999999996531 12222333443332211111 0 0125
Q ss_pred EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHH
Q 028466 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEE 136 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~ 136 (208)
.++||||||++.|..........+|++++|+|++++....+....+..+.. .+ ..|+++|+||+|+.+..+. ...+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~-i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG-IKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC-CCcEEEEEEeeccccchhHHHHHHH
Confidence 799999999999887777777788999999999854211111222222222 21 2468899999999653321 1234
Q ss_pred HHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 137 GEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 137 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+..++..+ +.+++++|+++++|++++++.|...+..
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 44444432 4689999999999999999999987754
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.82 E-value=6.1e-19 Score=147.91 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=111.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
-|.++|+.++|||||+++|++. .+.++..+.++++.....+...+. ..+.||||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5789999999999999999863 344455566666665555443322 358999999999998888888999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc--CHHHHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV--SIEEGEAKARELN---VMFIETSAKAGFNIKA 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 161 (208)
|+|+.+. ...+..+.+..+ ... +.| ++||+||+|+.+.... ...++..++...+ .+++++|+++|.|+++
T Consensus 81 VVda~eg-~~~qT~ehl~il-~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDG-VMAQTREHLAIL-QLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCC-CcHHHHHHHHHH-HHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999862 112222222222 222 344 5789999999643221 1234445554444 6899999999999999
Q ss_pred HHHHHHHHcCCC
Q 028466 162 LFRKIAAALPGM 173 (208)
Q Consensus 162 ~~~~l~~~~~~~ 173 (208)
+++.|.+.....
T Consensus 157 L~~~L~~~~~~~ 168 (614)
T PRK10512 157 LREHLLQLPERE 168 (614)
T ss_pred HHHHHHHhhccc
Confidence 999999876543
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=8.3e-19 Score=127.83 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=97.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.++|+++|+.++|||||+++|++... ..+..+..+++... ..+.....++.++||||+..|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAH--VEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeee--eEecCCCeEEEEEECcCHHHHH
Confidence 48999999999999999999975310 11123344444433 3344444678999999999998
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHc----
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKAREL---- 144 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~---- 144 (208)
......+..+|++++|+|+...-. ......+..+.. .+.| +|+++||+|+....+. ...+++......
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888888999999999999985311 122233333332 2455 7788999998632221 123445555444
Q ss_pred -CCeEEEeecCCCCCH
Q 028466 145 -NVMFIETSAKAGFNI 159 (208)
Q Consensus 145 -~~~~~~~S~~~~~~v 159 (208)
+++++++|+++|.++
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 368999999999885
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=3.7e-19 Score=148.59 Aligned_cols=157 Identities=17% Similarity=0.256 Sum_probs=112.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhc--CCCCC--------------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY--DKFDN--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
+|+|+|+.++|||||+++|+. +.+.. +..+.+++......+.+. .+.+++|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--GTKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--CEEEEEEECCCHHHHHHH
Confidence 799999999999999999985 22211 112233333333344454 478999999999999999
Q ss_pred hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHH-------HcCC
Q 028466 75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKAR-------ELNV 146 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 146 (208)
+..+++.+|++++|+|+.+. ...+...|+..+.. .+.|+++|+||+|+...+. ....++..++. +..+
T Consensus 81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999999863 33444555555543 3588899999999854321 11233333332 2346
Q ss_pred eEEEeecCCCC----------CHHHHHHHHHHHcCCC
Q 028466 147 MFIETSAKAGF----------NIKALFRKIAAALPGM 173 (208)
Q Consensus 147 ~~~~~S~~~~~----------~v~~~~~~l~~~~~~~ 173 (208)
+++.+|++++. |+..+|+.|.+.++..
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 79999999995 8999999999998754
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=6e-19 Score=120.17 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=101.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----chhhccchhhhhccCCEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 86 (208)
||+++|+.|+|||||+++|.+... .+..|..+.+ .=.++|||| +..|.+.......++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988665 3444544332 123589999 4456666666678999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (208)
+|.|++++.+.-. ..+... .+.|+|-|+||+|+.. ...+.++++++.+..|+ .+|++|+.+++|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999997643221 111111 2588999999999963 34467788888888887 6899999999999999998
Q ss_pred HH
Q 028466 166 IA 167 (208)
Q Consensus 166 l~ 167 (208)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 85
No 209
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=137.14 Aligned_cols=169 Identities=24% Similarity=0.222 Sum_probs=124.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----------ch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~ 75 (208)
..+||+|+|.|++|||||+|+|++.+-. ....++.|++.....+.+++ ..+.++||+|...-.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999987653 45567777888888888877 4588999999543222 22
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEEE
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~ 150 (208)
...+..+|++++|+|++.+ +.++...+..+... .+.++++|+||.|+.+..+...++.+...+.. +++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEG--ISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCC--chHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 3457789999999999954 44444434444333 35788999999999876545555554444432 468999
Q ss_pred eecCCCCCHHHHHHHHHHHcCCCccCCccccc
Q 028466 151 TSAKAGFNIKALFRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~ 182 (208)
+||+++.++.++|+.+.+.+.....+-++...
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence 99999999999999999988766666555443
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.6e-18 Score=144.64 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=102.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC------CeE-----E-----EEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE------DRT-----V-----RLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~ 70 (208)
.+...|+++|+.++|||||+++|.+...........+.+........+ +.. . .++||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 566789999999999999999998765543332222222211111110 111 1 278999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--C----------HH
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--S----------IE 135 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~----------~~ 135 (208)
|..++...+..+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+.+.... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99998888999999999999986 444443321 22 136899999999998532110 0 00
Q ss_pred -----------HHHHHHHHc---------------CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 136 -----------EGEAKAREL---------------NVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 136 -----------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
++....... .+.++++|+++|+|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 011111111 2579999999999999999888653
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=2e-18 Score=144.13 Aligned_cols=161 Identities=18% Similarity=0.268 Sum_probs=113.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc--CCCCCC------------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY--DKFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
-.+|+|+|+.++|||||+++|+. +.+... .+...++++......+....+.+.+|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999986 333221 1223444555555445555588999999999999999
Q ss_pred hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHH-------cCC
Q 028466 75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARE-------LNV 146 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 146 (208)
+..+++.+|++|+|+|+.+.. ..+...++..+.. .+.|.++++||+|+...+. ....++...... ..+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999998632 2223333333332 3588899999999864322 112333333322 235
Q ss_pred eEEEeecCCCC----------CHHHHHHHHHHHcCCC
Q 028466 147 MFIETSAKAGF----------NIKALFRKIAAALPGM 173 (208)
Q Consensus 147 ~~~~~S~~~~~----------~v~~~~~~l~~~~~~~ 173 (208)
+++.+|+.+|. ++..+++.|.+.++..
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 78999999997 6899999999998754
No 212
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-21 Score=135.33 Aligned_cols=168 Identities=35% Similarity=0.551 Sum_probs=143.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE-EEEEEEecCCchhhccchhhhhccCCEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..-++++|+|.-|+|||+++.+++...+...|..+++.++..+...++... +++.+||..|++.|..+..-|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 446899999999999999999999999988889999999988888777644 4789999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccC-cCHHHHHHHHHHcCC-eEEEeecCCCCCH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQ-VSIEEGEAKARELNV-MFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~S~~~~~~v 159 (208)
++|||+++.-+|+....|.+.+.... +...|+++.+||+|+...-. .......++.++++. ..+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999998875432 24567899999999854322 224677788888875 7999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028466 160 KALFRKIAAALPGME 174 (208)
Q Consensus 160 ~~~~~~l~~~~~~~~ 174 (208)
.|+-..|.+++....
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999987655
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=4.8e-19 Score=131.75 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=96.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC---------------------------C----CCCccceeeeeeeEEEEEECCeEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK---------------------------F----DNTYQATIGIDFLSKTMYLEDRTVR 59 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (208)
+|+++|+.++|||||+.+|+... + ..+..+..+++.....+.+.+ +.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 58999999999999999986220 0 112233444555555555544 67
Q ss_pred EEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-----hH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc--cC
Q 028466 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-----SF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK--RQ 131 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~ 131 (208)
+.+|||||+..|.......+..+|++|+|+|++++. .. .+....+... ... ...|+++++||+|+... .+
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence 999999999888887777888999999999998742 11 1122222222 222 23688989999999632 11
Q ss_pred cC----HHHHHHHHHHcC-----CeEEEeecCCCCCHH
Q 028466 132 VS----IEEGEAKARELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 132 ~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~v~ 160 (208)
.. ..++.......+ ++++++||++|+|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 222233344433 569999999999987
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=2.1e-18 Score=122.79 Aligned_cols=151 Identities=25% Similarity=0.335 Sum_probs=97.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccchhhhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR 80 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 80 (208)
.|+++|.+|+|||||++.+.++.......++.+.+.....+..+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996655444444444333333333333 789999999533 3334444444
Q ss_pred ---cCCEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHH--HcCCeEEEe
Q 028466 81 ---DSSVAVIVYDVASRQSF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKAR--ELNVMFIET 151 (208)
Q Consensus 81 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 151 (208)
+.+++++++|....... ..+..|+.. .+.|+++|+||+|+....+. .......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45788999998754221 223333322 24889999999998543221 1122222232 234589999
Q ss_pred ecCCCCCHHHHHHHHHHHc
Q 028466 152 SAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~ 170 (208)
|++++.++.+++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=6.6e-18 Score=126.72 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=79.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCC--------------C----CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFD--------------N----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|+.|+|||||+++|+...-. + +..+..++......+.+.+ +++.+|||||+..|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 5899999999999999999753110 0 1112222333334444444 689999999999999
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
..+..+++.+|++++|+|+++.-.. ....++..+.. .+.|+++++||+|+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 9999999999999999999864322 23444444433 358999999999985
No 216
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.7e-19 Score=120.23 Aligned_cols=160 Identities=22% Similarity=0.305 Sum_probs=117.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
++.+|+++|..|+||++++-++.-++.... .|+++. ....+.+ ++.++.+||.+|+...+..|+.|+.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigf--nve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGF--NVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCc--Ccccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 789999999999999999999876665433 455443 2333334 44889999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHh-hcCCCCeEEEEEeCCCCcCccCcCH---HHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKTDLVDKRQVSI---EEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
|+|.+|.+.+......+..+.+ ....+..++|++||.|........+ .......++.-..++++||.+|+|++..+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 9999998877765444444433 3335577889999999854321111 11111222223679999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
+||.+.+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999988753
No 217
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.3e-18 Score=138.25 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=124.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chhhhh-
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI- 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 79 (208)
++..+|+++|.||||||||+|+|++.+..-...++.|++.....+...++ .+.++|.||.-.... ..+.|+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 35678999999999999999999998887778899999998888888774 499999999543322 233443
Q ss_pred -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
...|++|-|.|+++.+....+.-. + ...+.|++++.|+.|..+.+-+ ....+++.+.+|+++++++|++|.|
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQ---L---lE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQ---L---LELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHH---H---HHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCC
Confidence 357999999999976544433222 2 2236889999999998654433 4466778888999999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028466 159 IKALFRKIAAALPGME 174 (208)
Q Consensus 159 v~~~~~~l~~~~~~~~ 174 (208)
++++...+.+......
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999998765544
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=4.8e-18 Score=125.96 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=79.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCC-------------------ccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------YQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 68 (208)
+|+|+|+.|+|||||+++|+....... .....++......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986543211 1111222222222222 345678999999999
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
..|......++..+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888889999999999999986544432 333333322 348999999999975
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.4e-17 Score=133.81 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=108.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++... .++..+..+++.. ...+......+.++||||+++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHHH
Confidence 3568999999999999999999975210 1122344444443 334444446789999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHHHHHHcC-
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEAKARELN- 145 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~- 145 (208)
|.......+..+|++++|+|+...- ..+..+.+..+.. .+.| +|+++||+|+.+..+.. ..++..++...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 9887777788999999999998531 1122233333332 2466 67889999986432221 234455555444
Q ss_pred ----CeEEEeecCCCC--------CHHHHHHHHHHHcC
Q 028466 146 ----VMFIETSAKAGF--------NIKALFRKIAAALP 171 (208)
Q Consensus 146 ----~~~~~~S~~~~~--------~v~~~~~~l~~~~~ 171 (208)
++++++|++++. ++.++++.|.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 67888888888775
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=1.4e-17 Score=133.98 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=98.1
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC----------------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..+.++|+++|+.++|||||+++|++. ...++..+..+++... +.+......+.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchH
Confidence 356799999999999999999999732 0112223445555433 4444445679999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEeCCCCcCccCcC---HHHHHHHHHHcC
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKTDLVDKRQVS---IEEGEAKARELN 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (208)
+|..........+|++++|+|+...-. ....+.+..+.. .+.|. ++++||+|+.+..+.. ..+++.++..++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 998777777889999999999986311 112233333332 24564 4678999986532211 235566666654
Q ss_pred -----CeEEEeecCCCC
Q 028466 146 -----VMFIETSAKAGF 157 (208)
Q Consensus 146 -----~~~~~~S~~~~~ 157 (208)
++++++|+.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999874
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=118.29 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=107.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 76 (208)
.....|+++|.+|||||||||+|++.+-......+.+.+.....+.+++ .+.++|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 3557899999999999999999999774333344555555556666666 378999999 334555666
Q ss_pred hhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--HHHHHHHH-HcCCe--E
Q 028466 77 SYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--EEGEAKAR-ELNVM--F 148 (208)
Q Consensus 77 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~-~~~~~--~ 148 (208)
.|++. -.++++++|+..+- ......+..+... .+.|++|++||+|.....+... ..+.+... ..... +
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 67664 46888899987542 2222223333333 2599999999999876433221 22221111 12222 8
Q ss_pred EEeecCCCCCHHHHHHHHHHHcCC
Q 028466 149 IETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+.+|+..+.|++++...|.+.+..
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhc
Confidence 889999999999999999988753
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=2.4e-17 Score=132.55 Aligned_cols=159 Identities=17% Similarity=0.161 Sum_probs=107.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-------CC---------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------KF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++. .+ ..+..+..+++.... .+.....++.|+||||+..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~--~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHV--EYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeee--EEcCCCcEEEEEECCCHHH
Confidence 45799999999999999999999852 10 112234444444333 3333445789999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEE-EEEeCCCCcCccCc---CHHHHHHHHHHcC-
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV-LVGNKTDLVDKRQV---SIEEGEAKARELN- 145 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~---~~~~~~~~~~~~~- 145 (208)
|.......+..+|++++|+|+.+.. ..+..+++..+.. .++|.+ +++||+|+.+..+. ...+++.++..++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8887778888999999999998532 1222233333322 346754 57899999643221 1224555555543
Q ss_pred ----CeEEEeecCCCC----------CHHHHHHHHHHHcC
Q 028466 146 ----VMFIETSAKAGF----------NIKALFRKIAAALP 171 (208)
Q Consensus 146 ----~~~~~~S~~~~~----------~v~~~~~~l~~~~~ 171 (208)
++++++|+.++. ++..+++.|...++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 679999999984 67888888887765
No 223
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.6e-17 Score=131.86 Aligned_cols=160 Identities=19% Similarity=0.267 Sum_probs=123.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.+..-|.++|+-..|||||+..+............+|..+....+..+. ....++|+|||||+.|..+..+...-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3557799999999999999999998888777777777777777776652 224699999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCC
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAG 156 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~ 156 (208)
|+|+++.+. +. .+..+.+......++|++|.+||+|..+. +.........+++ ..++++||++|
T Consensus 83 ILVVa~dDG--v~--pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 83 ILVVAADDG--VM--PQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEEEEccCC--cc--hhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 999999863 22 22233344444467999999999999743 3444444444443 46899999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028466 157 FNIKALFRKIAAALPGM 173 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~ 173 (208)
+|+.++++.+.-.....
T Consensus 156 ~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 156 EGIDELLELILLLAEVL 172 (509)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988665433
No 224
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=5.1e-18 Score=136.45 Aligned_cols=168 Identities=26% Similarity=0.355 Sum_probs=125.7
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+....++.+||+++|..|+||||||-.++...+++...+-...-..... .....+..+|+|++....-+......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad--vtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD--VTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc--cCcCcCceEEEecccccchhHHHHHHHh
Confidence 56667788999999999999999999999999997665443322112222 2233356899999866555555677799
Q ss_pred cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcC-C-eEEEeecC
Q 028466 81 DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELN-V-MFIETSAK 154 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~S~~ 154 (208)
.+|++++||+.+++++++.+ ..|+-.+++..+ .++|+|+|+||.|.........+. ..-...++. + ..+++||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999995 678888887664 679999999999997665542222 233333332 2 57899999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028466 155 AGFNIKALFRKIAAAL 170 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~ 170 (208)
+-.++.++|-.-.+.+
T Consensus 159 ~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhHhhhhhhhhee
Confidence 9999999998877664
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=3.3e-17 Score=132.27 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=98.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC----------------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++.. ...+..+..+++..... +.....++.++||||+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~--~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVE--YETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEE--EccCCeEEEEEECCChHH
Confidence 457999999999999999999998531 11223344444444333 333345788999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHcC-
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKARELN- 145 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~- 145 (208)
|.......+..+|++++|+|+...- ..+..+.+..+.. .+.| +|+++||+|+.+..+. ...++..++...+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888889999999999998531 1222333333332 2467 7788999999753221 1234555555543
Q ss_pred ----CeEEEeecCCCCC
Q 028466 146 ----VMFIETSAKAGFN 158 (208)
Q Consensus 146 ----~~~~~~S~~~~~~ 158 (208)
++++++|+.++.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 6899999998863
No 226
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=1.1e-17 Score=134.94 Aligned_cols=147 Identities=24% Similarity=0.273 Sum_probs=97.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC---------------------------------CCCccceeeeeeeEEEEEECCe
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DNTYQATIGIDFLSKTMYLEDR 56 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 56 (208)
++|+++|+.++|||||+++|+...- .++..+..+++.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 5899999999999999999862210 112233444555555554544
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI-- 134 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-- 134 (208)
.++.|+||||++.|.......+..+|++++|+|+...-.. +..+.+..+. ..+ ..++++++||+|+....+...
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~-~~~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIAS-LLG-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHH-HcC-CCcEEEEEEecccccchHHHHHH
Confidence 5799999999999987777788999999999999853211 1122222222 222 245888999999864332212
Q ss_pred --HHHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466 135 --EEGEAKARELN---VMFIETSAKAGFNIKA 161 (208)
Q Consensus 135 --~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 161 (208)
.+...+....+ ++++++|+++|+|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22233334333 4699999999999885
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=2e-17 Score=123.06 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=97.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCcc--------------ceeeeeeeEEEE----------------------EEC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ--------------ATIGIDFLSKTM----------------------YLE 54 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~----------------------~~~ 54 (208)
||+++|+.++|||||+++|..+.+..... ...+.......+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999765533211 111110000000 011
Q ss_pred CeEEEEEEEecCCchhhccchhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV 132 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 132 (208)
.....+.++||||++.|.......+. .+|++++|+|+..+.. ....+++..+.. .+.|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12357899999999999776665554 6899999999975322 222333333332 34789999999998543221
Q ss_pred --CHHHHHHHHHH--------------------------cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 133 --SIEEGEAKARE--------------------------LNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 133 --~~~~~~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
...++.+.... ..++++.+|+.+|+|+++++..|...
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 12222222221 12489999999999999999888654
No 228
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=6.3e-17 Score=125.98 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=117.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (208)
-..|.++|-.|+|||||+|+|++...........|.+.....+.+.+. ..+.+.||.|.- .|.+... ..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTLE-EV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHHH-Hh
Confidence 468999999999999999999977766555666667777777777653 479999999922 2333332 36
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (208)
..+|+++.|+|+++|.....+......+.......+|+|+|.||+|+..+.. ....+....-..+.+||++++|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCH
Confidence 7899999999999997666666666666655446699999999999865433 11111111115899999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028466 160 KALFRKIAAALPGM 173 (208)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (208)
+.+++.|.+.+...
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988644
No 229
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=4.6e-17 Score=122.48 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=114.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 83 (208)
.+.+||.||+|||||++.+...+......+..|......++.++... .+++-|.||.-+- .....+.+..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 57899999999999999999777654444555555555566666544 5999999995432 223345577899
Q ss_pred EEEEEEeCCCh---hhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCCC
Q 028466 84 VAVIVYDVASR---QSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAGF 157 (208)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 157 (208)
+++||+|++.+ ..+++++....++..+.. .+.|.++|+||+|+.+.. ...+.++++.+. .+++++||+.++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999987 777777776666655443 678899999999985322 223456666554 469999999999
Q ss_pred CHHHHHHHHHHH
Q 028466 158 NIKALFRKIAAA 169 (208)
Q Consensus 158 ~v~~~~~~l~~~ 169 (208)
++.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999988764
No 230
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=6.8e-17 Score=122.37 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=114.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-----hcc---chhh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-----FRS---LIPS 77 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~---~~~~ 77 (208)
++....|+|.|.||||||||++.+++-+..-...|..|..+....+..+. .+++++||||.-+ ... ....
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 34567899999999999999999998888655566666666666665554 5799999999332 111 1111
Q ss_pred hhc-cCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeec
Q 028466 78 YIR-DSSVAVIVYDVAS--RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSA 153 (208)
Q Consensus 78 ~~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~ 153 (208)
.++ -.++++|++|++. ..+.+.+...+..+..... .|+++|+||.|+.+.... .++.......+. ....+++
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceee
Confidence 222 3688999999984 5677888888888887764 899999999998654333 333333444443 4788899
Q ss_pred CCCCCHHHHHHHHHHHc
Q 028466 154 KAGFNIKALFRKIAAAL 170 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~ 170 (208)
..+.+++.+...+....
T Consensus 319 ~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 319 TKGCGLDKLREEVRKTA 335 (346)
T ss_pred eehhhHHHHHHHHHHHh
Confidence 99999998888887774
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=2.5e-17 Score=134.80 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=98.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC--C-------------------------------CCccceeeeeeeEEEEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------NTYQATIGIDFLSKTMYL 53 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~ 53 (208)
...++|+++|+.++|||||+++|+...- . ++..+.++++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4579999999999999999999873311 0 111223445554444444
Q ss_pred CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS 133 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 133 (208)
+ ..++.|+||||++.|.......+..+|++++|+|+...-. .+..+.+. +....+ ..++++++||+|+....+..
T Consensus 105 ~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~-l~~~lg-~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 105 E--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSF-IATLLG-IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred C--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHH-HHHHhC-CCceEEEEEeeccccchhHH
Confidence 4 3579999999999987777777899999999999975311 11111111 222222 24688899999996433222
Q ss_pred HHHHH----HHHHHc----CCeEEEeecCCCCCHHHH
Q 028466 134 IEEGE----AKAREL----NVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 134 ~~~~~----~~~~~~----~~~~~~~S~~~~~~v~~~ 162 (208)
..++. .+.... .++++++|+++++|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22222 222332 368999999999998764
No 232
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=3.3e-17 Score=121.43 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=100.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----chhhhhccCCE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 84 (208)
||+++|+.++||||+.+.+..+-.+.+. .-..|.+.....+...+ ...+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999988877554332 22334444444444333 25899999999875544 35667899999
Q ss_pred EEEEEeCCChhh---HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC------cCHHHHHHHHHHcC---CeEEEee
Q 028466 85 AVIVYDVASRQS---FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ------VSIEEGEAKARELN---VMFIETS 152 (208)
Q Consensus 85 ~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------~~~~~~~~~~~~~~---~~~~~~S 152 (208)
+|+|+|+.+.+. +..+...+..+.+. .++..+.++++|+|+..+.. ....++...+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999984333 33334444444433 36788999999999864321 11334445555556 7899999
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028466 153 AKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~ 171 (208)
.++ +.+-++|..+.+.+-
T Consensus 159 I~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TTS-THHHHHHHHHHHTTS
T ss_pred CcC-cHHHHHHHHHHHHHc
Confidence 999 578888888777764
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.75 E-value=3.1e-17 Score=133.28 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=102.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC-------------------------------CCCCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (208)
-+.++|+++|+.++|||||+.+|+... ..++.....+++..... +..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ecC
Confidence 346899999999999999999886310 01223334444444433 444
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCCC-eEEEEEeCCCCc
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL-------NTTKWVEEVRTERGSDV-IIVLVGNKTDLV 127 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~iivv~nK~D~~ 127 (208)
..+.++++|+|||++|.......+..+|++|+|+|+.+ ..++ +..+.+..+.. .++ ++|+++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 45789999999999999999999999999999999986 2332 23333222222 245 478889999985
Q ss_pred Cc--cC----cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHH
Q 028466 128 DK--RQ----VSIEEGEAKARELN-----VMFIETSAKAGFNIKA 161 (208)
Q Consensus 128 ~~--~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 161 (208)
+. .+ ....+++.++...+ ++++++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 11 12345566666655 6799999999999853
No 234
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-16 Score=119.56 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh------------hcc
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRS 73 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~ 73 (208)
+-+-+.|+|+|.||+|||||.|.+++.+.........++....--+ +.....++.|+||||.-. +..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 4578999999999999999999999998866554444433333223 334446899999999221 111
Q ss_pred chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-------------CcCH--HHHH
Q 028466 74 LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-------------QVSI--EEGE 138 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-------------~~~~--~~~~ 138 (208)
.....+..+|.+++|+|+++...... ...+..+..+. +.|-++|.||.|..... +... .+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 33455778999999999996322111 11222233232 48889999999975321 1111 1111
Q ss_pred HHHHHc--------------CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 139 AKAREL--------------NVMFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 139 ~~~~~~--------------~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
+..... +-.+|.+||++|+|++++.++|....+..+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 111111 114899999999999999999998875443
No 235
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.74 E-value=7.4e-17 Score=130.88 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=111.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEE---------------ECC-----------
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMY---------------LED----------- 55 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~---------------~~~----------- 55 (208)
.....++|.++|+-..|||||+.+|++-.. .++..+.++++....... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 335679999999999999999999986433 334444444433322110 000
Q ss_pred -----eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 56 -----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 56 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
....+.|+|+||++.|.......+..+|++++|+|+..+....+..+.+. +....+ -.++|+|+||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHH
Confidence 02368999999999998888888899999999999985311222233332 222222 24688899999996432
Q ss_pred C--cCHHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 131 Q--VSIEEGEAKARE---LNVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 131 ~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
. ....+++.+... .+.+++++|+++|+|++.+++.|.+.++..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 1 112333443333 257899999999999999999999866543
No 236
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=4.6e-17 Score=126.70 Aligned_cols=154 Identities=24% Similarity=0.326 Sum_probs=109.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (208)
...++++++|+..+|||||+-+|+.. ...+++.++.+++.....+..+
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~- 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD- 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence 45699999999999999999998732 1123344555555555555444
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.+.++|+|+|||..|-......+.++|+.|+|+|+.+.+ +| ..+......+....+ -..+||++||+|..+.+
T Consensus 84 -k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 -KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred -CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence 478999999999999999988999999999999999753 11 112222222333333 24578888999998876
Q ss_pred CcCHHHHHHHHHHc---------CCeEEEeecCCCCCHHHHH
Q 028466 131 QVSIEEGEAKAREL---------NVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 131 ~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~v~~~~ 163 (208)
+..++++......+ ++.|+++|+..|+|+.+.-
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 66666665544433 2579999999999987654
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.74 E-value=9.2e-17 Score=130.60 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=100.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC--C-----------------------------CCCCccceeeeeeeEEEEEEC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--K-----------------------------FDNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (208)
..+.++|+++|+.++|||||+.+|+.. . ..++..+..+++.....+..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 345699999999999999999998741 0 01223344455554444444
Q ss_pred CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 028466 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF---LNTTKWVEEVRTERGSDVI-IVLVGNKTDLV 127 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 127 (208)
..+.++|+|||||.+|.......+..+|++++|+|+.... .+ .+..+.+..+.. .++| +|+++||+|..
T Consensus 83 -~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 -PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred -CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence 4468999999999999998888899999999999998531 11 123333333322 2455 67889999943
Q ss_pred --CccCcCH----HHHHHHHHHc-----CCeEEEeecCCCCCHHH
Q 028466 128 --DKRQVSI----EEGEAKAREL-----NVMFIETSAKAGFNIKA 161 (208)
Q Consensus 128 --~~~~~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 161 (208)
+..+... .++...+... .++++++|+.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2222222 3334443333 35799999999999864
No 238
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1e-16 Score=128.23 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=124.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++..-|.|+|+-..|||||+..|...........+++..+....+....+ -.++|.|||||..|..+..+...-+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 46678999999999999999999988887666677777777777766644 58999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecCCCC
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 157 (208)
+|+.+.|. - +.+..+.+......++|++|.+||+|.++. ..+.+.+....++ +.++++|+++|+
T Consensus 230 LVVAadDG-V---mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 230 LVVAADDG-V---MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred EEEEccCC-c---cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 99999873 1 222334444455568999999999997643 3445555555543 458999999999
Q ss_pred CHHHHHHHHHHHcCC
Q 028466 158 NIKALFRKIAAALPG 172 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~ 172 (208)
|++.+.+.+.-...-
T Consensus 303 nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEV 317 (683)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999988766433
No 239
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=8e-17 Score=119.40 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=79.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------CeEEEEEEEecC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA 66 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 66 (208)
+|+++|+.++|||||+++|+...- ..+..+..+++.....+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 01112233333333333343 336789999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
|+..|......+++.+|++++|+|+.+...... ...+..+. ..+.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCcc
Confidence 999999999999999999999999986533332 22222222 2357899999999975
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=1.2e-16 Score=117.00 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=94.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeee---eeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----hc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 80 (208)
+++|+++|.+|+|||||+|.|++...........+. ......+... ....+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986654322222111 1111111111 12368999999976433322222 56
Q ss_pred cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCccC-----------cCHHHHHHHHH----Hc
Q 028466 81 DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ-----------VSIEEGEAKAR----EL 144 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~ 144 (208)
.+|++++|.+. .+... ..++..+... +.|+++|+||+|+....+ ....++++.+. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78999998542 23333 3344444432 478999999999843111 11112222222 22
Q ss_pred C---CeEEEeecC--CCCCHHHHHHHHHHHcCC
Q 028466 145 N---VMFIETSAK--AGFNIKALFRKIAAALPG 172 (208)
Q Consensus 145 ~---~~~~~~S~~--~~~~v~~~~~~l~~~~~~ 172 (208)
+ ..+|.+|+. .+-++..+.+.|...+++
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 2 368999998 568999999999998865
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=3.4e-16 Score=127.85 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=98.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC----------------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++.. ...+..+..+++.....+..++ ..+.++|+||+++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 456899999999999999999998521 1223334445544444444433 5789999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHc--
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKAREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+.+.. ..+..+++..+.. .++| +++++||+|+.+..+. ...++..++...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9888888889999999999998542 2222333333332 2466 7788999999653221 122445555543
Q ss_pred ---CCeEEEeecCCCC
Q 028466 145 ---NVMFIETSAKAGF 157 (208)
Q Consensus 145 ---~~~~~~~S~~~~~ 157 (208)
.++++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 4679999998874
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.72 E-value=4e-16 Score=125.46 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=106.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++... .++..+..+++... ..+.....++.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~--~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAH--VEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeE--EEEcCCCeEEEEEECCCHHH
Confidence 4679999999999999999999986211 12224444555443 33433446789999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEE-EEEeCCCCcCccCc---CHHHHHHHHHHc--
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIV-LVGNKTDLVDKRQV---SIEEGEAKAREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~---~~~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+..+- ......++..+.. .+.|.+ +++||+|+.+..+. ...++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8888878889999999999998531 1222333333332 247765 57899999642221 122344444443
Q ss_pred ---CCeEEEeecCCCC----------CHHHHHHHHHHHcC
Q 028466 145 ---NVMFIETSAKAGF----------NIKALFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~S~~~~~----------~v~~~~~~l~~~~~ 171 (208)
+++++++|++++. ++..+++.|...++
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 3689999999875 46677777777654
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=1.5e-16 Score=121.83 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=95.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---- 74 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---- 74 (208)
.++|+|+|.+|+|||||+|+|++..+... ..++.++......+..++..+.+.+|||||.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876433 2344455556666677777789999999995432110
Q ss_pred ----------------------hhhhhc--cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 75 ----------------------IPSYIR--DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 75 ----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
....+. .+|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 001223 36777777776641 12111 22233332 25899999999998652
Q ss_pred --cCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 130 --RQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
.......+.+.+..+++.++.....+.
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 233456677888888999998776443
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=9.7e-17 Score=136.14 Aligned_cols=151 Identities=25% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCC--C-------------------------------CCccceeeeeeeEEEEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------NTYQATIGIDFLSKTMY 52 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~ 52 (208)
....++|+++|++++|||||+++|+...- . ++.....+++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999984321 0 01122334444444444
Q ss_pred ECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV 132 (208)
Q Consensus 53 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 132 (208)
.++ .++.|+||||++.|.......+..+|++++|+|+...-. .+..+.+..+... + ..+++|++||+|+.+..+.
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence 443 578899999999887766677899999999999975321 1112222222222 1 2578889999999642221
Q ss_pred CHH----HHHHHHHHcC---CeEEEeecCCCCCHHH
Q 028466 133 SIE----EGEAKARELN---VMFIETSAKAGFNIKA 161 (208)
Q Consensus 133 ~~~----~~~~~~~~~~---~~~~~~S~~~~~~v~~ 161 (208)
... ++..+...++ ++++++|+++|+|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 122 2233334444 4699999999999874
No 245
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.2e-16 Score=126.39 Aligned_cols=168 Identities=18% Similarity=0.220 Sum_probs=121.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC---------------CCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD---------------KFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~ 71 (208)
+--++.|+.+-..|||||..+|+.. +..-++++++|+.-....+.+ ++..+.++++|||||-+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 4457899999999999999998722 112235566666555544433 356688999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHcCCeEEE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKARELNVMFIE 150 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~ 150 (208)
...+.+.+.-+|++++|+|++..-..+....++..+. .+.-+|.|+||+|+..++.. -..++.+.+.....+.+.
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~ 214 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY 214 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence 9999999999999999999996433333333433333 35778999999999765421 133344444444558999
Q ss_pred eecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466 151 TSAKAGFNIKALFRKIAAALPGMETLSST 179 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~~~~~~~ 179 (208)
+||++|-|++++++.|++.++.-......
T Consensus 215 vSAK~G~~v~~lL~AII~rVPpP~~~~d~ 243 (650)
T KOG0462|consen 215 VSAKTGLNVEELLEAIIRRVPPPKGIRDA 243 (650)
T ss_pred EEeccCccHHHHHHHHHhhCCCCCCCCCc
Confidence 99999999999999999999766554433
No 246
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=4.9e-16 Score=118.53 Aligned_cols=116 Identities=24% Similarity=0.280 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-C----------------Cc---cceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-N----------------TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
-+|+|+|+.|+|||||+++|+...-. . .+ +...++.+......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999742110 0 00 0011222333333344445789999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
+|......+++.+|++|+|+|+++.-. .....++.... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 998888888999999999999986422 12223333222 236899999999998543
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=6.6e-16 Score=125.49 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=103.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC------C----------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD------K----------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|.+- . ..++..+..+++..... +.....++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccc
Confidence 35689999999999999999999621 1 11233355555554444 444446789999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHHHHHHc--
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEAKAREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+.+.- ..+..+.+..+.. .+.| +|+++||+|+.+..+.. ..++..+...+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8887777778899999999997532 1222333333322 2477 57789999997532211 11233333332
Q ss_pred ---CCeEEEeecC---CCCC-------HHHHHHHHHHHcC
Q 028466 145 ---NVMFIETSAK---AGFN-------IKALFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~S~~---~~~~-------v~~~~~~l~~~~~ 171 (208)
.++++++|+. ++.| +..+++.|...++
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2578888875 4544 6788888887765
No 248
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=4e-16 Score=119.13 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=80.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC--C----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK--F----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|++|+|||||+++|+... . +.+..+..+++.....+.+.+ +++++|||||+..|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 58999999999999999996311 0 122334555555555666655 679999999999999
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
..+..+++.+|++|+|+|+.+...- .....+..+.. .++|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 8899999999999999999864211 12233333322 3588999999999864
No 249
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.5e-16 Score=121.98 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=97.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCC------------------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|++|+|||||+++|+....... .....++......+.+++ +.+.+|||||+..|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999974321100 011222222333344444 679999999999988
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH-HHHHHHHcCCeE--E
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE-GEAKARELNVMF--I 149 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~--~ 149 (208)
..+..++..+|++++|+|+++......... +..+. ..+.|.++++||+|.... ...+ ...+...++..+ +
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~---~~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFAD---EAGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHH---HcCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 888889999999999999987543332222 22222 235889999999998643 2222 233333345443 4
Q ss_pred EeecCCCCCHHHHHHHHHHHcC
Q 028466 150 ETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.++..++.++..+.+.+.....
T Consensus 152 ~ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 152 QLPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred EecccCCCceeEEEEcccCEEE
Confidence 4556777777766666655543
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.1e-15 Score=126.44 Aligned_cols=117 Identities=23% Similarity=0.277 Sum_probs=79.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc--CCC------C---------C---CccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKF------D---------N---TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~--~~~------~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (208)
.+..+|+|+|+.++|||||.++|+. +.. . . ..+...++.+......+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999963 110 0 0 001112223333333333344789999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
|+.+|......+++.+|++|+|+|+++.-. .....++.... ..++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCR---LRDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHH---hcCCCEEEEEECCccc
Confidence 999999888889999999999999986421 12233333322 2468999999999974
No 251
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=1.4e-15 Score=118.19 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=100.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEE---------------------ECC-eEEEEEEEecCCc-
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAGQ- 68 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 68 (208)
|+++|.++||||||+|+|++........+..+++....... .++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998875422223333222221111 122 3367999999997
Q ss_pred ---hhhccchhh---hhccCCEEEEEEeCCC---------------h-hhHHh----HHHH-------------------
Q 028466 69 ---ERFRSLIPS---YIRDSSVAVIVYDVAS---------------R-QSFLN----TTKW------------------- 103 (208)
Q Consensus 69 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~----~~~~------------------- 103 (208)
..+..+... .++++|++++|+|++. | +.++. +..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334443333 5899999999999973 1 11111 1111
Q ss_pred -----------H----------HHHHhh----------------------cCCCCeEEEEEeCCCCcCccCcCHHHHHHH
Q 028466 104 -----------V----------EEVRTE----------------------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAK 140 (208)
Q Consensus 104 -----------~----------~~~~~~----------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 140 (208)
+ ..+... ....+|+|+|+||.|+....+. ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 0 000000 0124699999999997532221 1112
Q ss_pred HHHc-CCeEEEeecCCCCCHHHHHH-HHHHHcCCCccCC
Q 028466 141 AREL-NVMFIETSAKAGFNIKALFR-KIAAALPGMETLS 177 (208)
Q Consensus 141 ~~~~-~~~~~~~S~~~~~~v~~~~~-~l~~~~~~~~~~~ 177 (208)
.... +..++.+||+.+.++.++.+ .+.+.+++.+...
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 1222 46899999999999999998 6999998765443
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.6e-15 Score=119.76 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=122.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC---------------CCCCCccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD---------------KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 68 (208)
.+--+..++.+-..|||||..|++.. ...-++++++|+......+.+ ++..|.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34457788999999999999998732 112245667777666666655 347789999999999
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCC-
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNV- 146 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~- 146 (208)
-+|.-.+.+.+.-+.+.++|+|+++.=.-+.+...|..+.+ +.-++-|+||+|++... .++.++... -.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhCCC
Confidence 99999999999999999999999965444445666665543 56688889999997543 233333333 3344
Q ss_pred --eEEEeecCCCCCHHHHHHHHHHHcCCCccC
Q 028466 147 --MFIETSAKAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 147 --~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
..+.+||++|.|++++++.|.+.++.....
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 578999999999999999999999766543
No 253
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.7e-16 Score=107.47 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=116.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.=|++++|-.|+|||||++.|..+...+. .||. ...+..+.+.+ .+++.+|.+||...+..+..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 446899999999999999999986655322 2221 12233344544 679999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--------------C---CeEE
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--------------N---VMFI 149 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------------~---~~~~ 149 (208)
.+|+-|.+.+.+.+..++.+.... -.++|+++.+||+|...+. .+++.+....-+ + +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999999888777766544 3679999999999986543 233322221111 1 2478
Q ss_pred EeecCCCCCHHHHHHHHHHHc
Q 028466 150 ETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~ 170 (208)
.+|...+.+.-+.|.|+...+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 889999999888888887665
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=1.2e-15 Score=130.73 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=82.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC--------C-----C-----CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------D-----N-----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~--------~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+..+|+|+|+.|+|||||+++|+...- . . +.....++......+.+.+ +.+.+|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 4568999999999999999999974311 0 0 0112223333334444544 68999999999
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99999999999999999999999876444433333 22322 3689999999999853
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=2.2e-15 Score=101.09 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=70.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchhhhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR 80 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 80 (208)
+|+|+|.+|+|||||+|+|++.+. .....+..+.......+.+++. .+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 2222334444444455556664 4679999995421 112333458
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 123 (208)
.+|++++|+|++++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999876311 22233333342 46999999998
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=1.6e-16 Score=113.07 Aligned_cols=118 Identities=17% Similarity=0.332 Sum_probs=74.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEE-CCeEEEEEEEecCCchhhccchhhh---hccCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSY---IRDSS 83 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~---~~~~d 83 (208)
+.-.|+|+|+.|+|||+|+.+|..+...+...+. .... .... ......+.++|+|||++.+...... ...+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 3457999999999999999999998665443333 1111 1111 1222368999999999988765554 88999
Q ss_pred EEEEEEeCCC-hhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCc
Q 028466 84 VAVIVYDVAS-RQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 84 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~ 129 (208)
++|||+|.+. ...+....+++..+.... ...+|++|++||.|+...
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999999974 445666555555554332 367899999999998654
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6.3e-15 Score=111.51 Aligned_cols=154 Identities=23% Similarity=0.242 Sum_probs=110.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIR 80 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 80 (208)
-.-.++++|+|++|||||++.|++-+......+..|.+.....+.+++ .+++++|+||.-. ........++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 356899999999999999999998877655567777778888888887 6799999998331 2234566789
Q ss_pred cCCEEEEEEeCCChhh-HHhHHHHHHHHHhh-------------------------------------------------
Q 028466 81 DSSVAVIVYDVASRQS-FLNTTKWVEEVRTE------------------------------------------------- 110 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~------------------------------------------------- 110 (208)
+||++|+|+|+..+.. .+.+...+...--.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985443 32232222221100
Q ss_pred ----------------cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 111 ----------------RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 111 ----------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
.-..+|.++|.||.|+.. .++...+.+.. ..+.+||+.+.|++++.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 001246788889999865 22333343333 789999999999999999999987
No 258
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.4e-15 Score=115.78 Aligned_cols=163 Identities=17% Similarity=0.094 Sum_probs=110.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 83 (208)
-|.+||.|++|||||++.+..-+..-...+..|....--.+.... ...+.+-|.||.-+ ......+.+..+-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 367899999999999999997766544445555544444444432 23699999999432 2223344567789
Q ss_pred EEEEEEeCCChhh---HHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe-EEEeecCCCC
Q 028466 84 VAVIVYDVASRQS---FLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM-FIETSAKAGF 157 (208)
Q Consensus 84 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 157 (208)
++++|+|++..+. .+.......++..+. ..+.|.+||+||+|+....+......+.+....+.. ++.+|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 9999999985332 333344444444332 257899999999997655554444455555555532 2239999999
Q ss_pred CHHHHHHHHHHHcCCCc
Q 028466 158 NIKALFRKIAAALPGME 174 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~~~ 174 (208)
|++++...+.+.+....
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887665
No 259
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=4.2e-15 Score=122.94 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=80.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc-CCCCC-------------------CccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY-DKFDN-------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (208)
.+..+|+|+|+.++|||||+++|+. ..... ..+...++.+......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999862 11100 011122333334334444445789999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
|+..|......+++.+|++|+|+|+++. ++. ...++.... . .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~-~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTR-L--RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHH-h--cCCCEEEEEECcccc
Confidence 9999988888889999999999999863 222 233333222 2 468999999999984
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=9.8e-15 Score=106.88 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCc--cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------ch----h
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI----P 76 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~ 76 (208)
++|+++|.+|+|||||+|.+++....... .+..+.+.......+++ ..+.++||||...... .. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654322 22334444444444544 4799999999654321 11 1
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCC--CCeEEEEEeCCCCcCccCc------CHHHHHHHHHHcCCeE
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDKRQV------SIEEGEAKARELNVMF 148 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 148 (208)
....+.|++++|+++.+. +- .....+..+....+. -.++++|.|+.|....... .....+......+..+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 124578999999998762 11 122333444433331 2467888899986543211 1234455555556666
Q ss_pred EEeec-----CCCCCHHHHHHHHHHHcCC
Q 028466 149 IETSA-----KAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 149 ~~~S~-----~~~~~v~~~~~~l~~~~~~ 172 (208)
+.++. ..+.++.++++.|.+++.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 66664 4567899999999998865
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=1.4e-14 Score=124.06 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=85.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (208)
...+..+|+|+|+.++|||||+++|+...- ..+..+.++++.....+.+++ ++++++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP 81 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP 81 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence 344667899999999999999999974210 112344566666666676755 679999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
|+..|...+...++.+|++|+|+|+.+.-... ....+..+. ..+.|+|+++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~---~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQAD---KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHH---HcCCCEEEEEECCCCCC
Confidence 99999888999999999999999998642221 122222222 23588899999999863
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.8e-15 Score=119.86 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=112.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---------chhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS 77 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~ 77 (208)
..+.|+|+|.||+|||||+|.|...... ....++.|.|.....+++++ +++.+.||+|..+-.. ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999999999999977663 45567777777777777777 7899999999765111 1233
Q ss_pred hhccCCEEEEEEeCC--ChhhHHhHHHHHHHHHhhcC------CCCeEEEEEeCCCCcCc-cCcCHHHHH-H--HHHHcC
Q 028466 78 YIRDSSVAVIVYDVA--SRQSFLNTTKWVEEVRTERG------SDVIIVLVGNKTDLVDK-RQVSIEEGE-A--KARELN 145 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~------~~~~iivv~nK~D~~~~-~~~~~~~~~-~--~~~~~~ 145 (208)
.+..+|++++|+|+. +-++-..+.+.+.....-.. ...+++++.||.|+... .+....-.. . ......
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 477899999999993 33333333444444332221 23688999999999754 222211111 1 111112
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHcCCCcc
Q 028466 146 VMFIETSAKAGFNIKALFRKIAAALPGMET 175 (208)
Q Consensus 146 ~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~ 175 (208)
-.+.++|+.+++|++.+...|.+.+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 245669999999999999999988754433
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=5.5e-15 Score=126.59 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=87.0
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEE
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLW 63 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 63 (208)
.+....+-.+|+|+|+.++|||||+++|+...- ..+..+.++++.....+.+++ +++.+|
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~li 80 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINII 80 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEE
Confidence 344445567999999999999999999973211 011234455555566666655 689999
Q ss_pred ecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
||||+.++...+..+++.+|++|+|+|+.+...... ..++..+.. .+.|+++++||+|+...
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 999999988888899999999999999986433322 222232322 35889999999998653
No 264
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.62 E-value=8.6e-15 Score=111.81 Aligned_cols=149 Identities=24% Similarity=0.324 Sum_probs=109.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC---------------------------------CCCccceeeeeeeEEEEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DNTYQATIGIDFLSKTMYL 53 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 53 (208)
-..+|++-+|.-.-||||||-||+...- ..+++-+++++..+..+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF-- 81 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF-- 81 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--
Confidence 3468999999999999999999874311 11222344555555444
Q ss_pred CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS 133 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 133 (208)
.....+|+|-|||||+.|.+........+|+.|+++|+- ..+.++......+....+. ..++|.+||+||.+..+..
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence 444568999999999999999988899999999999995 5666665555666666543 3477788999998876655
Q ss_pred HHHH----HHHHHHcCC---eEEEeecCCCCCHH
Q 028466 134 IEEG----EAKARELNV---MFIETSAKAGFNIK 160 (208)
Q Consensus 134 ~~~~----~~~~~~~~~---~~~~~S~~~~~~v~ 160 (208)
++++ ..++.++++ .++++||+.|+|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 5544 455666664 79999999999865
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=3.7e-14 Score=116.85 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=73.6
Q ss_pred EEEEEecCCchhh-----ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC
Q 028466 59 RLQLWDTAGQERF-----RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS 133 (208)
Q Consensus 59 ~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 133 (208)
++.|+||||.... .......+..+|+++||+|+...-+... ...+..+... +.+.|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 5789999997542 2234457899999999999986422222 2223333322 2235999999999986433333
Q ss_pred HHHHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 134 IEEGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 134 ~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
.+.+..+.... ...+|++||+.|.|++.+++.|...
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 44555554322 3479999999999999999999874
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=1e-13 Score=118.80 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=82.9
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhc--CCC----------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
..+-.+|+|+|+.++|||||+++|+. +.. ..+..+..+++.....+.+.+ +.++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 44567999999999999999999973 111 011244555666566666655 6799999999
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
+..|.......+..+|++|+|+|+...-.... ...+..+.. .+.|.++++||+|+.
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 99988888888999999999999875422222 222222322 357889999999985
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=1.2e-13 Score=110.59 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEE---------------------EC-CeEEEEEEEecCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG 67 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G 67 (208)
++|+|+|.+++|||||+|+|++........+..+++....... .+ .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998776533233333333322211 11 1225789999999
Q ss_pred ch----hhccchhhh---hccCCEEEEEEeCCC---------------hh-hHHh----HHHH-----------------
Q 028466 68 QE----RFRSLIPSY---IRDSSVAVIVYDVAS---------------RQ-SFLN----TTKW----------------- 103 (208)
Q Consensus 68 ~~----~~~~~~~~~---~~~~d~~i~v~d~~~---------------~~-s~~~----~~~~----------------- 103 (208)
.- ....+-..+ ++++|++++|+|+.. |. .++. +..|
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 222333333 889999999999971 11 1100 0000
Q ss_pred -----------------------HHHHHh-h---------------------cCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466 104 -----------------------VEEVRT-E---------------------RGSDVIIVLVGNKTDLVDKRQVSIEEGE 138 (208)
Q Consensus 104 -----------------------~~~~~~-~---------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~ 138 (208)
+..+.. . ....+|+++|+||.|...... ....+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~ 240 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-NIERLK 240 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-HHHHHH
Confidence 000000 0 012479999999999753221 122222
Q ss_pred HHHHHcCCeEEEeecCCCCCHHH-HHHHHHHHcCCCccCCcc
Q 028466 139 AKARELNVMFIETSAKAGFNIKA-LFRKIAAALPGMETLSST 179 (208)
Q Consensus 139 ~~~~~~~~~~~~~S~~~~~~v~~-~~~~l~~~~~~~~~~~~~ 179 (208)
++ .+..++.+||..+.++.+ +.+.+.+.+++.+.-...
T Consensus 241 ~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~ 279 (396)
T PRK09602 241 EE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL 279 (396)
T ss_pred hc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence 22 356799999999999999 889999988776544433
No 268
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.4e-14 Score=107.50 Aligned_cols=161 Identities=18% Similarity=0.319 Sum_probs=105.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEE-EEECCeEEEEEEEecCCchh-------hccchhhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQER-------FRSLIPSY 78 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~ 78 (208)
...++|+++|..|+|||||+|+|+++...+-..-..+.+..... ..++. -.+++||+||.++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 45799999999999999999999976664433222222222211 12333 3699999999665 77777888
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc-------CcCHHHHHHHHHH--------
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-------QVSIEEGEAKARE-------- 143 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-------~~~~~~~~~~~~~-------- 143 (208)
+...|.++++.++.|+.--. -.+++..+.... .+.++++++|..|....- ......++++...
T Consensus 115 l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGT-DEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccC-CHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998763211 233344444333 348899999999975320 1111112222111
Q ss_pred cC--CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 144 LN--VMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 144 ~~--~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.. -+++..+...+=|++++...+++.++
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11 26788888999999999999999886
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.4e-14 Score=94.62 Aligned_cols=137 Identities=22% Similarity=0.295 Sum_probs=98.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----chhhccchhhhhccCCEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 86 (208)
||+++|..|+|||||.+.|.+.... +..+..+++ +.. -.+|||| +..+.+.......++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999877552 333433322 221 1569998 3333333445577899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (208)
+|-.++++++.-.-. +... ...|+|-|++|.|+.+ ..+....+.+..+.|. ++|++|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f~p~-----f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPPG-----FLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCcc-----cccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999875432211 1111 2355888899999975 3457788999999997 7999999999999999999
Q ss_pred HHHH
Q 028466 166 IAAA 169 (208)
Q Consensus 166 l~~~ 169 (208)
|...
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 8754
No 270
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.5e-14 Score=100.83 Aligned_cols=156 Identities=23% Similarity=0.341 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc---cCCEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA 85 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~ 85 (208)
.-.|+++|+.+||||+|+-+|..+.+.....+ ++.....+...+. .++++|.|||.+.+.-...+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999998855433222 2223333334333 3889999999998887777777 78999
Q ss_pred EEEEeCCC-hhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcC------HHHH------HH----------
Q 028466 86 VIVYDVAS-RQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVS------IEEG------EA---------- 139 (208)
Q Consensus 86 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~------~~~~------~~---------- 139 (208)
|||+|..- ......+.+++..+.... ...+|+++++||.|+.-+.... +.++ +.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999862 334444444554444333 3668899999999985321100 0000 00
Q ss_pred --------------HHH--HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 140 --------------KAR--ELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 140 --------------~~~--~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
|.+ ...+.|.+.|++++ +++++.+||.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000 01356888999988 8999999998753
No 271
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-14 Score=112.54 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=115.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC--CC------------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK--FD------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (208)
-+|+|+.+-..|||||+..|+.+. |. ...+...++++..+..-+....+.++|+|||||.+|...+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 579999999999999999998432 11 1122344555666655555555889999999999999999
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHc-------CCe
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKAREL-------NVM 147 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~-------~~~ 147 (208)
.+.+..+|++++++|+... .+.+.+..+...... +.+.|||+||+|...++... .++...++.++ ..+
T Consensus 86 ERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999999852 344445544444432 45567778999987654322 22333333333 457
Q ss_pred EEEeecCCC----------CCHHHHHHHHHHHcCCCc
Q 028466 148 FIETSAKAG----------FNIKALFRKIAAALPGME 174 (208)
Q Consensus 148 ~~~~S~~~~----------~~v~~~~~~l~~~~~~~~ 174 (208)
++..|+..| +++.-+|+.|.+.++...
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 888998876 468999999999997665
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.56 E-value=8.6e-14 Score=119.20 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=76.2
Q ss_pred EcCCCCcHHHHHHHhhcCCC------------------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchh
Q 028466 15 LGDQSVGKTSIITRFMYDKF------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (208)
Q Consensus 15 vG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (208)
+|+.++|||||+++|+...- ..+..+.+++......+.+.+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999953211 011223444555555555655 7899999999999888888
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
.++..+|++++|+|++......... .+..+.. .+.|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCC
Confidence 8999999999999998754433322 2222322 358999999999985
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=2e-13 Score=119.55 Aligned_cols=145 Identities=25% Similarity=0.274 Sum_probs=100.8
Q ss_pred CcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE----------------EEEEEEecCCchhhccchhhhhccCC
Q 028466 20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 20 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
++||||+.++.+-+........+|.++....+..+... ..+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999888877666777766666655554211 13899999999999888888888999
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC----------------HHHHH------
Q 028466 84 VAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS----------------IEEGE------ 138 (208)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----------------~~~~~------ 138 (208)
++++|+|+++ +++++.+. .+.. .+.|+++|+||+|+....... ..+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 33333322 2222 358999999999996432210 01110
Q ss_pred -HHHHHc---------------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 139 -AKAREL---------------NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 139 -~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
....+. .+.++++||++|+|+++++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 001111 357999999999999999998875543
No 274
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.1e-13 Score=111.86 Aligned_cols=151 Identities=26% Similarity=0.379 Sum_probs=107.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECCe
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLEDR 56 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 56 (208)
.-+.++++|+-.+|||||+.+++.. +..+++.++++.+. ....++..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~fes~ 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWFESK 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEEecC
Confidence 3588999999999999999998621 11223344444444 44445566
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SFL---NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
...++|+|+|||..|-........++|+.|+|+|++..+ +|+ +.++. ..+.+..+ -..++|++||+|+++..
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCcc
Confidence 678999999999999999988899999999999998631 222 12332 23333333 24578888999999888
Q ss_pred CcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHH
Q 028466 131 QVSIEEGEAKAREL----------NVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 131 ~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~ 162 (208)
+..+++++.....+ .+.|+++|+..|+|+...
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 77777776555443 357999999999997655
No 275
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.52 E-value=7.7e-13 Score=100.30 Aligned_cols=171 Identities=19% Similarity=0.287 Sum_probs=122.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC--eEEEEEEEecCCchhhccchhhhhccC---
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRDS--- 82 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 82 (208)
..-+|+|+|..++|||||+.+|.+.+ ..-+..+..|.+..+.-+. ...++.+|-..|..-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 45689999999999999999998765 3445555666655553322 223677887778766665555443332
Q ss_pred -CEEEEEEeCCChhhH-HhHHHHHHHHHhhc-------------------------------------------------
Q 028466 83 -SVAVIVYDVASRQSF-LNTTKWVEEVRTER------------------------------------------------- 111 (208)
Q Consensus 83 -d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------- 111 (208)
-++|++.|.++|+.+ +.+..|...+.++.
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 478889999999554 44677776655431
Q ss_pred ------------CCCCeEEEEEeCCCCcC----ccC-------cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 112 ------------GSDVIIVLVGNKTDLVD----KRQ-------VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 112 ------------~~~~~iivv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
+.++|++||++|+|... +.+ .....+++|+..+|+.++.+|+++..|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 11358899999999842 111 1234668888899999999999999999999999999
Q ss_pred HcCCCccCCcccc
Q 028466 169 ALPGMETLSSTKQ 181 (208)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (208)
..++.+...+..-
T Consensus 288 r~yG~~fttpAlV 300 (473)
T KOG3905|consen 288 RSYGFPFTTPALV 300 (473)
T ss_pred HhcCcccCCcceE
Confidence 9999877765543
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=1.9e-13 Score=117.56 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=78.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC---------------CCC-CCccceeeeee--eEEEEEECCeEEEEEEEecCCch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD---------------KFD-NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~---------------~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+..+|+++|+.++|||||+++|+.. .+. .+..+..+++. ......+++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999742 111 11112222222 22223355666889999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
.|......+++.+|++|+|+|+.+.-.... ...+..+. ..+.|+++++||+|..
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH---HcCCCEEEEEEChhcc
Confidence 998888899999999999999975321111 12122222 2356778999999985
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=2e-12 Score=99.17 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch-------h
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------P 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~ 76 (208)
.+...++|+|+|.+|+||||++|+|++...... .....+..........++ ..+.++||||........ .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 456789999999999999999999998765321 111112121122222343 679999999966432211 1
Q ss_pred hhh--ccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcC--CCCeEEEEEeCCCCcC
Q 028466 77 SYI--RDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERG--SDVIIVLVGNKTDLVD 128 (208)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 128 (208)
.++ ...|++++|..++.. .+.. -...+..+....+ .-.++||+.|+.|..+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 111 258999999665422 1221 1223333433332 1245888899999753
No 278
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=3.7e-13 Score=107.15 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=114.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc----cchh-----
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLIP----- 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~----- 76 (208)
++..-.++|+|.++||||||+|.++.........++.+.-.....+.+.. ..+.++||||.-+.- ....
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence 56778999999999999999999988777655555555444444443333 578999999944211 1111
Q ss_pred hhhccCCEEEEEEeCC--ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcCCeEEEe
Q 028466 77 SYIRDSSVAVIVYDVA--SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELNVMFIET 151 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (208)
....--.+++++.|++ +..++.++...+..+.... .+.|+|+|+||+|+.....+... .+......-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 1112235788888988 3567888888888888766 57899999999998755444432 3334444445899999
Q ss_pred ecCCCCCHHHHHHHHHHHcCC
Q 028466 152 SAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~ 172 (208)
|+.+.+|+.++.....+.+..
T Consensus 322 S~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cccchhceeeHHHHHHHHHHH
Confidence 999999999888777766543
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.1e-13 Score=101.63 Aligned_cols=171 Identities=20% Similarity=0.187 Sum_probs=116.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEE------------------C------CeEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYL------------------E------DRTVR 59 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------------~------~~~~~ 59 (208)
..+++|.++|+-..|||||..+|.+- .+.++..+.+++...+....+ . .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45899999999999999999998753 333444444444433322111 1 11247
Q ss_pred EEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHH
Q 028466 60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEG 137 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~ 137 (208)
++|+|+|||+-..........-.|+.++|++++.+..--+..+.+-.+. ..+ -..++++-||+|++...+ ..+.++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG-IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc-cceEEEEecccceecHHHHHHHHHHH
Confidence 8999999999777666566666799999999986432222333222222 111 145888899999975432 335667
Q ss_pred HHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCCccCCcc
Q 028466 138 EAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGMETLSST 179 (208)
Q Consensus 138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~ 179 (208)
++|.+.. +++++++||..+.|++.+++.|.+.++........
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~ 210 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDK 210 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCC
Confidence 7776654 57999999999999999999999999765444333
No 280
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=2.8e-12 Score=96.75 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=72.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------ch
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~ 75 (208)
...++|+|+|.+|+|||||+|.|++....... ....+..........++ ..+.+|||||...... ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 45799999999999999999999987653221 22223333333334444 5799999999664421 12
Q ss_pred hhhhc--cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCC--CCeEEEEEeCCCCcC
Q 028466 76 PSYIR--DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGS--DVIIVLVGNKTDLVD 128 (208)
Q Consensus 76 ~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 128 (208)
..++. ..|++++|..++.. .+.. -...+..+....+. -.++++|.||.|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 22333 57888888766532 1111 12333444433332 245899999999853
No 281
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.46 E-value=5e-12 Score=102.81 Aligned_cols=170 Identities=21% Similarity=0.337 Sum_probs=119.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC--eEEEEEEEecCCchhhccchhhhhcc---
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRD--- 81 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~--- 81 (208)
...-.|+|+|..++|||||+.+|.+.. ...++.+.+|.+..+.-+. ...++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 345789999999999999999997654 3345666667666553332 22368899888866676666554442
Q ss_pred -CCEEEEEEeCCChhhHH-hHHHHHHHHHhh-------------------------------c-----------------
Q 028466 82 -SSVAVIVYDVASRQSFL-NTTKWVEEVRTE-------------------------------R----------------- 111 (208)
Q Consensus 82 -~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~-------------------------------~----------------- 111 (208)
--++|+|.|.+.|+.+- .+..|+..+..+ .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 25788899999987553 244444333221 0
Q ss_pred --------------CCCCeEEEEEeCCCCcCcc-------C----cCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 112 --------------GSDVIIVLVGNKTDLVDKR-------Q----VSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 112 --------------~~~~~iivv~nK~D~~~~~-------~----~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
..++|++||++|.|..... + ....-++.++..+|+.++.+|++...+++.++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0126899999999975311 1 11234678888899999999999999999999999
Q ss_pred HHHcCCCccCCcc
Q 028466 167 AAALPGMETLSST 179 (208)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (208)
.+.+++.+...+.
T Consensus 260 ~h~l~~~~f~~~~ 272 (472)
T PF05783_consen 260 LHRLYGFPFKTPA 272 (472)
T ss_pred HHHhccCCCCCCc
Confidence 9999888776443
No 282
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.45 E-value=2.4e-12 Score=100.71 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=83.1
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEEVRTERG-SDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D 125 (208)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+..+..... .+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36789999999999999999999999999999999874 345554444444444322 6799999999999
Q ss_pred CcCc----------------cCcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 126 LVDK----------------RQVSIEEGEAKAREL----------NVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 126 ~~~~----------------~~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+..+ .......+..+.... .+..+.++|.+..++..+|+.+.+.+..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 7421 022333443333321 2445778899999999999888887643
No 283
>PRK13768 GTPase; Provisional
Probab=99.45 E-value=1.1e-12 Score=99.52 Aligned_cols=114 Identities=23% Similarity=0.227 Sum_probs=70.6
Q ss_pred EEEEEecCCchhh---ccchhhh---hcc--CCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 59 RLQLWDTAGQERF---RSLIPSY---IRD--SSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 59 ~~~i~D~~G~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
.+.+||+||+.+. +.....+ +.. .+++++|+|+........ ...++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5899999997653 2222222 222 899999999965332222 122222211111246899999999998654
Q ss_pred cCcCH--HHHH------------------------HHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 130 RQVSI--EEGE------------------------AKARELN--VMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
.+... .... +..++.+ .+++++|+++++|+++++++|.+.++.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 32211 0000 1122334 588999999999999999999998854
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=1e-12 Score=97.26 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=94.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCcc--ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------chh----
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIP---- 76 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~---- 76 (208)
++|+|+|..|+||||++|.+++........ ...+..........++ ..+.|+||||..+... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887754432 2333344444445666 5689999999433211 111
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccCcC-------HHHHHHHHHHcCCe
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQVS-------IEEGEAKARELNVM 147 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (208)
....+.|++++|+.+.... - .....+..+....+.. ..++||.|..|......+. ...++.+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~t-~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFT-E-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB-S-H-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcch-H-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 1234689999999987321 1 1122233333333321 3477777888865443311 12245556666778
Q ss_pred EEEeecC------CCCCHHHHHHHHHHHcCCCc
Q 028466 148 FIETSAK------AGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 148 ~~~~S~~------~~~~v~~~~~~l~~~~~~~~ 174 (208)
|+.++.. +...+.++++.|-+++.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8877777 34568888888888875443
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.45 E-value=1.8e-12 Score=111.78 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=77.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEE--ECCeEEEEEEEecCCch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~ 69 (208)
+..+|+++|+.++|||||+++|+...- ..+..+.++++.....+. +++..+.++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 345799999999999999999974211 011122233333333332 34456789999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
+|.......++.+|++|+|+|+...-.. +....+..+.. .+.|.|+++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH---cCCCeEEEEECchhh
Confidence 9998889999999999999999753211 12222222222 235778889999975
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=6.5e-12 Score=91.88 Aligned_cols=103 Identities=19% Similarity=0.158 Sum_probs=65.7
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
....++++.|..-...... . -+|.+|.|+|+.+.+.... ....++. ..=++++||+|+.+.........
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence 3566778888432222221 1 2688999999986544321 1112221 11277789999975333344555
Q ss_pred HHHHHH--cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 138 EAKARE--LNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.+.++. .+++++++|+++|+|+++++++|.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 555555 3579999999999999999999997763
No 287
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=2.1e-12 Score=101.52 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=83.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee---eeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----h
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I 79 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~ 79 (208)
.+++|+|+|.+|+|||||||.|.+-...+...... +.+........ ...-.+.+||.||..-.......| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999998654432222111 11111112211 111259999999976433333333 5
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc--C-----ccCcCH----HHHHHHHHH----c
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV--D-----KRQVSI----EEGEAKARE----L 144 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~-----~~~~~~----~~~~~~~~~----~ 144 (208)
...|.+|++.+ +.|....-++....+. .++|+++|-+|+|.. . .+.... .++++.+.+ .
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 56799888887 4455544444433333 358999999999961 1 111222 233333332 2
Q ss_pred CC---eEEEeecCCCC--CHHHHHHHHHHHcCCC
Q 028466 145 NV---MFIETSAKAGF--NIKALFRKIAAALPGM 173 (208)
Q Consensus 145 ~~---~~~~~S~~~~~--~v~~~~~~l~~~~~~~ 173 (208)
++ .+|-+|+.+-. ++..+.+.|.+.++..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 33 68999998865 4778989998887654
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=4.6e-12 Score=100.63 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=61.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh--
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER-- 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~-- 70 (208)
..++|.|+|.||+|||||+|+|++........+..|++.....+.+.... .++.++|+||.-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 45799999999999999999998777654445666666555555443221 2589999999532
Q ss_pred -----hccchhhhhccCCEEEEEEeCC
Q 028466 71 -----FRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 71 -----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344578899999999984
No 289
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.5e-12 Score=95.48 Aligned_cols=162 Identities=21% Similarity=0.204 Sum_probs=106.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc-------CCCCCCccceeeeeeeEEEEEEC-------CeEEEEEEEecCCchhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY-------DKFDNTYQATIGIDFLSKTMYLE-------DRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~D~~G~~~~~ 72 (208)
+..+++.++|+-.+|||||.++|.. ++.+++.++..+.|..-..+... +...++.++|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3459999999999999999999863 23345556666666555444332 344678999999998776
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-------c-
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-------L- 144 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~- 144 (208)
+.......-.|..++|+|+.....-+..+-. .+.+.. ....+||+||.|..++.+.. ..+.+.+.. .
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~-ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRA-SKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhh-hHHHHHHHHHHHHHHhcC
Confidence 6666666677999999999843222222211 122222 24467777999976543221 112222111 1
Q ss_pred ---CCeEEEeecCCC----CCHHHHHHHHHHHcCCC
Q 028466 145 ---NVMFIETSAKAG----FNIKALFRKIAAALPGM 173 (208)
Q Consensus 145 ---~~~~~~~S~~~~----~~v~~~~~~l~~~~~~~ 173 (208)
+.+++++|+.+| +++.++.+.|...+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 368999999999 88999999888887543
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=1.2e-12 Score=114.26 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=80.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------------Ce
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------------DR 56 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~ 56 (208)
.+-.+|+|+|+.++|||||+++|+...- ..+..+..+++.....+.+. +.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3456999999999999999999974321 11122233333333333332 23
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
.+.++++|||||.+|.......++.+|++|+|+|+...-... .+..+..+. ..+.|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHH---HCCCCEEEEEECCccc
Confidence 567899999999999999999999999999999998532222 222222222 2468999999999985
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=1.4e-12 Score=113.66 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=80.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC----------------CCCccceeeeeeeEEEEEEC--------CeEEEEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLE--------DRTVRLQLW 63 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~ 63 (208)
+..+|+|+|+.++|||||+++|+...- ..+..+.++++.....+.+. ...+.++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 445999999999999999999985211 11122233333333334443 225679999
Q ss_pred ecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 64 DTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
||||+.+|.......++.+|++|+|+|+...-... ....+..+.. .+.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999999998999999999999999998531111 2222333322 358999999999985
No 292
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.40 E-value=1.4e-11 Score=97.23 Aligned_cols=114 Identities=16% Similarity=0.232 Sum_probs=81.3
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~ 126 (208)
..+.+||.+|+...+..|..++.+++++|||+|+++. ..+.+....+..+.+.. ..+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5689999999999999999999999999999999963 24555444555554432 267899999999998
Q ss_pred cCcc---------------CcCHHHHHHHHHHc-----------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 127 VDKR---------------QVSIEEGEAKAREL-----------NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 127 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+. ......+..+.... .+..+.++|.+..++..+|+.+.+.+.
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 4210 01233333333221 144577889999999999988887764
No 293
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.40 E-value=5.7e-12 Score=85.17 Aligned_cols=114 Identities=36% Similarity=0.416 Sum_probs=80.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754332 2222 222233457788999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
|+..+.++++.+ |...+....+.+.|.++++||.|+.+..+...... ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999998888755 76666655556788999999999844333332222 235567888888874
No 294
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=1.9e-12 Score=97.77 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=79.4
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM 147 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
+++..+.+.+++++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..+......+. ....++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~-~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDI-YRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHH-HHHCCCe
Confidence 577788888999999999999999887 88889999876643 468999999999996544433333433 3457889
Q ss_pred EEEeecCCCCCHHHHHHHHHHHcC
Q 028466 148 FIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
++++|++++.|++++|+.+...+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~~~ 123 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNRIS 123 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCCEE
Confidence 999999999999999999876543
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.39 E-value=1.4e-11 Score=99.92 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=120.2
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.+.+.+.+.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+.|.+-. ....+.... ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3456789999999999999999999999887766555555555555555566667788887653 222222222 67899
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~ 163 (208)
++++||.+++.+|......+...... ...|+++|++|.|+.+..+....+..++++++++ +.+.+|+++... .++|
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf 575 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF 575 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence 99999999999999988776655443 5699999999999976554444444889999997 456677775333 8899
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
..|..+...
T Consensus 576 ~kL~~~A~~ 584 (625)
T KOG1707|consen 576 IKLATMAQY 584 (625)
T ss_pred HHHHHhhhC
Confidence 988877643
No 296
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.38 E-value=7.3e-12 Score=97.75 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=67.5
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCH
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSI 134 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~ 134 (208)
++.+.|+||+|...-... ....+|.+++|.+...++.+..+.. .+... .-++|+||.|+..... ...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHH
Confidence 367899999997633322 4677999999987544444443332 12211 1278889999864321 112
Q ss_pred HHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 135 EEGEAKARE-------LNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.+++..... ...+++.+|+.++.|++++++.|.+.+.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233333332 1257999999999999999999998865
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=1.5e-11 Score=91.88 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=80.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+...|+|+|.+|+|||||++.+.+...........+. ..+ ......++.++||||.. ......++.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 34578999999999999999999864221111111110 111 11233578999999864 22334578899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcC---HHHHHH-HHHHc--CCeEEEeecCCCC
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVS---IEEGEA-KAREL--NVMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~-~~~~~--~~~~~~~S~~~~~ 157 (208)
+|+|++...... ....+..+. . .+.| +++|+||.|+.+..... ...++. +..+. +.+++.+|+++.-
T Consensus 109 lviDa~~~~~~~-~~~i~~~l~-~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEME-TFEFLNILQ-V--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHH-HHHHHHHHH-H--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999997532221 122222232 2 2356 45589999986432211 112222 22222 4689999998874
No 298
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=5.4e-11 Score=93.60 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=58.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh----
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER---- 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 70 (208)
++|.++|.||+|||||+|+|++........+..|++.....+.+.... .++.++|+||.-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877544444555555554444443321 2589999999432
Q ss_pred ---hccchhhhhccCCEEEEEEeCC
Q 028466 71 ---FRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 71 ---~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334478999999999984
No 299
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2.5e-12 Score=93.10 Aligned_cols=149 Identities=23% Similarity=0.316 Sum_probs=95.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----chhhhhccC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDS 82 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 82 (208)
.-||+++|.+|+|||++-..+..+-.. +...++.++++....+.+-|. ..+.+||++|++.+-. .....++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 468999999999999988766644322 234455566666655544332 4689999999985433 334568899
Q ss_pred CEEEEEEeCCChhhHHhH---HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHH----HcCCeEEEeec
Q 028466 83 SVAVIVYDVASRQSFLNT---TKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKAR----ELNVMFIETSA 153 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~----~~~~~~~~~S~ 153 (208)
+++++|||++..+-...+ +..++.+.++. +...+++..+|+|+.... +....+-+.... ..++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999875433333 33444444433 456677788999997542 222223233322 33467888888
Q ss_pred CCCCCH
Q 028466 154 KAGFNI 159 (208)
Q Consensus 154 ~~~~~v 159 (208)
++..-.
T Consensus 162 wDetl~ 167 (295)
T KOG3886|consen 162 WDETLY 167 (295)
T ss_pred hhHHHH
Confidence 776533
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=2.1e-11 Score=90.01 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=84.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeee------eeEEEEEECC--------------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGID------FLSKTMYLED-------------------- 55 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~------~~~~~~~~~~-------------------- 55 (208)
....|.|+|+.|+|||||+++++....... .....+.+ .....+...+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 457889999999999999999874311000 00000000 0000111111
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE 135 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 135 (208)
....+.+++|.|.-... ..+....+..+.|+|+.+.+.. +... ... ...|.++++||.|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 02356777777721000 1111234556677777643221 1111 111 13567899999999654333334
Q ss_pred HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 136 EGEAKARELN--VMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 136 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
+.....++.+ .+++++|++++.|++++++++.+..
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4555555544 7899999999999999999998753
No 301
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1e-11 Score=102.97 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=108.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC----------------eEEEEEEEecCCch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE 69 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~ 69 (208)
..+..-++|+|+-.+|||-|+..+.+-++......+++..+....+...+ ....+.++|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 35667799999999999999999988777655555554333333222210 11247899999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC----------------
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS---------------- 133 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---------------- 133 (208)
.|..+..+....+|++|+|+|+... ++. +.+..+..+...+.|+||..||+|..-.+...
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhG--lep--qtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHG--LEP--QTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhcc--CCc--chhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999999999853 221 11222222333579999999999974221100
Q ss_pred ----HHHHHHHHHHc------------------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 134 ----IEEGEAKAREL------------------NVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 134 ----~~~~~~~~~~~------------------~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
..+......++ .+.++++||.+|+||-+++-+|+++.
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 01111111111 13579999999999999999998775
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.7e-11 Score=102.65 Aligned_cols=118 Identities=20% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC--------C------C----CCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------K------F----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~--------~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
..+--+|.|+|+..+|||||.++++.. + + .++..+.++++-....+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 456678999999999999999998721 0 1 112233444444444455553 47899999999
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
|-+|...+.+.++-.|++|+|+|+... ++.+ +.. +++....++|.++++||+|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveG--V~~QTEtv---~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEG--VEPQTETV---WRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCC--eeecHHHH---HHHHhhcCCCeEEEEECcccccc
Confidence 999999999999999999999999843 3322 222 22233356999999999998643
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.30 E-value=1.7e-12 Score=97.40 Aligned_cols=112 Identities=23% Similarity=0.143 Sum_probs=58.1
Q ss_pred EEEEEecCCchhhccchhhhh--------ccCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
.+.++|||||-++-..+...- ...-++++++|+..... ...+..++..+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999987655443332 34568888999863322 122233333333222246999999999999762
Q ss_pred cC----------------------cCHHHHHHHHHHcC-C-eEEEeecCCCCCHHHHHHHHHHHc
Q 028466 130 RQ----------------------VSIEEGEAKARELN-V-MFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 130 ~~----------------------~~~~~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
.. .....+.....+++ . .++++|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 00001111111123 3 799999999999999999887654
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=3.1e-11 Score=86.09 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=42.8
Q ss_pred EEEEEecCCchh----hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466 59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 59 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 124 (208)
.+.|+||||... ....+..++..+|++|+|.++++...-.....+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 478999999653 3356788889999999999999754444444444444332 23488888884
No 305
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.9e-11 Score=90.69 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=105.2
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc----------------CCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY----------------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.-++|..+|+-+.|||||..+++. ++.+++..+. +++....+.+......+..+|+|||.+|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rG--ITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcC--ceeccceeEEecCCceEEeccCCChHHH
Confidence 358999999999999999988751 1122333344 4445555555555567899999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCc---CHHHHHHHHHHcCC-
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQV---SIEEGEAKARELNV- 146 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~- 146 (208)
-........+.|+.|+|+.+.+. .+.+..+.+...++. .+| ++++.||+|+.++.++ -..+++.+..+++.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99888888999999999999873 233333333333332 354 6677899999875443 24566777777753
Q ss_pred ----eEEEeecCC-CC-------CHHHHHHHHHHHcC
Q 028466 147 ----MFIETSAKA-GF-------NIKALFRKIAAALP 171 (208)
Q Consensus 147 ----~~~~~S~~~-~~-------~v~~~~~~l~~~~~ 171 (208)
+++.-|++. .+ .+.++++.+-.+++
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 566666653 22 24555555555553
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.28 E-value=5.5e-11 Score=91.30 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=78.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------- 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 70 (208)
.++|+|+|.+|+|||||+|.|++...... ...+..+......+.-++..+.+.|+||||...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999987654322 112333444445556677788999999999332
Q ss_pred ----------hccchhh---------hhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 71 ----------FRSLIPS---------YIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 71 ----------~~~~~~~---------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
|...... .-..+|++++.++++.. .+..+ ...+..+. ..+++|-|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 1110000 01146899999988642 12211 12223332 358899999999986433
Q ss_pred C--cCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 131 Q--VSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 131 ~--~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
+ .....+...+..+++.+|.......
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~~~~ 186 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPEDDD 186 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S--------
T ss_pred HHHHHHHHHHHHHHHcCceeeccccccc
Confidence 2 2345666777778887776554443
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=4.3e-11 Score=88.99 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=67.4
Q ss_pred EEEEEEecCCchhh------ccchhhhhc--cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 58 VRLQLWDTAGQERF------RSLIPSYIR--DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
+.+.++||||+-+. ..+....+. .--++++|.|.....+... +-..+....-......|+|++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 45889999997532 112211222 3356777888754322222 22222222333346799999999999864
Q ss_pred cc-----CcCHHHHHHHHHH---------------------cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 129 KR-----QVSIEEGEAKARE---------------------LNVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 129 ~~-----~~~~~~~~~~~~~---------------------~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
.. --+++..++...+ .++..+-+|+.+|.|++++|..+.+.+.+.
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 31 0011111111111 046789999999999999999998876443
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=3.3e-10 Score=89.59 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=96.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC----CCCC------------Cccce---eeee--e---eEEEEE-ECCeEEEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD----KFDN------------TYQAT---IGID--F---LSKTMY-LEDRTVRLQLW 63 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~----~~~~------------~~~~~---~~~~--~---~~~~~~-~~~~~~~~~i~ 63 (208)
++-|.|+|+-++|||||+|+|.+. +... ...++ .|++ + ...++. .++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 688999999999999999999877 2221 11122 1111 1 112222 23445689999
Q ss_pred ecCCchhhcc-------c----------------------hhhhhc-cCCEEEEEE-eCC-----ChhhHHhHHHHHHHH
Q 028466 64 DTAGQERFRS-------L----------------------IPSYIR-DSSVAVIVY-DVA-----SRQSFLNTTKWVEEV 107 (208)
Q Consensus 64 D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~~ 107 (208)
||+|...-.. . +...+. .+|+.|+|. |.+ .....+.-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999432100 0 233455 789999988 764 112223345555555
Q ss_pred HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC--CCCHHHHHHHHHHHcC
Q 028466 108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA--GFNIKALFRKIAAALP 171 (208)
Q Consensus 108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~~~~~ 171 (208)
.. .++|+++|+|+.|.... ......+.+...++++++.+|+.. .+.+..+++.++..++
T Consensus 177 k~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 177 KE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred Hh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 54 46999999999994322 133444566677888888888754 4556666666655543
No 309
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.8e-11 Score=93.71 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=110.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
-|...|+-..|||||+..+.+..- ++...+.++++.........+. .+.|+|.||++++-......+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467789999999999999986543 4455567777777766666553 79999999999999988888899999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc---CCeEEEeecCCCCCHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL---NVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~ 164 (208)
|+++++ ...........+.+..+ ....++|+||.|..+.. ......++..... +.+++.+|+.+++|++++.+
T Consensus 80 vV~~de--Gl~~qtgEhL~iLdllg-i~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADE--GLMAQTGEHLLILDLLG-IKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCcc--CcchhhHHHHHHHHhcC-CCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999963 22222111222333332 23457888999996542 1122223333322 46789999999999999999
Q ss_pred HHHHHcC
Q 028466 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
.|.++..
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999885
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.21 E-value=9.9e-12 Score=88.19 Aligned_cols=53 Identities=32% Similarity=0.315 Sum_probs=45.2
Q ss_pred EEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 118 VLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 118 ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++|+||.|+.+.-..+.+...+.+++.+ .+++++|.++|+|++++++|+....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6788999998877777777777777764 7999999999999999999998654
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=1.8e-10 Score=89.66 Aligned_cols=104 Identities=18% Similarity=0.102 Sum_probs=65.4
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE 136 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 136 (208)
++.+.|+||+|..... ...+..+|.++++.... +-+++......+. ..|.++|+||+|+.+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 4678999999964222 23467789988886543 3334333333332 36678999999986543211100
Q ss_pred H------HHHHH---HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 137 G------EAKAR---ELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 137 ~------~~~~~---~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
. ..... ....+++++|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 11111 12246899999999999999999998754
No 312
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.21 E-value=2.9e-11 Score=91.82 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=103.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (208)
..-|.+||-.|+|||||+++|+.-.......-.-+.|.........++. .+.+.||.|.- .|..... ..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 3568999999999999999999666555545555555555555554443 68899999932 2333332 36
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe----EEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI----IVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA 155 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (208)
..+|+++.|.|++.|+.-.+....+..+.+..-...| ++=|-||.|..+.....+ .++ -+.+|+++
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--cccccccc
Confidence 7899999999999997766666666666655433233 455668888754322111 112 57789999
Q ss_pred CCCHHHHHHHHHHHcC
Q 028466 156 GFNIKALFRKIAAALP 171 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~ 171 (208)
|+|++++.+.+-..+.
T Consensus 326 gdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVA 341 (410)
T ss_pred CccHHHHHHHHHHHhh
Confidence 9999999999887753
No 313
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=1e-09 Score=85.48 Aligned_cols=122 Identities=16% Similarity=0.273 Sum_probs=83.5
Q ss_pred EEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhh----------HHhHHHHHHHHHhhcC-CCCe
Q 028466 48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQS----------FLNTTKWVEEVRTERG-SDVI 116 (208)
Q Consensus 48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~~ 116 (208)
...+.+.+ ..+.++|.+||...+.-|...+.+++++|||.++++.+. +.+.......+..... .+.+
T Consensus 187 e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts 264 (354)
T KOG0082|consen 187 EVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS 264 (354)
T ss_pred EEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence 33444444 678999999999999999999999999999999986432 2223333444443332 6789
Q ss_pred EEEEEeCCCCcCcc---------------CcCHHHHHHHHHHc----------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 117 IVLVGNKTDLVDKR---------------QVSIEEGEAKAREL----------NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 117 iivv~nK~D~~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+|++.||.|+.++. ....+++..+.... .+-++.+.|.+..+|+.+|+.+.+.+.
T Consensus 265 iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 265 IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred EEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 99999999985320 01223332222211 244677799999999999999988874
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=5.3e-10 Score=93.08 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=73.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIP 76 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 76 (208)
..++|+|+|.+|+||||++|.|++....... ....+..........++ ..+.|+||||...... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 4589999999999999999999987643222 11222223222233444 5799999999664311 112
Q ss_pred hhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC--CeEEEEEeCCCCcC
Q 028466 77 SYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD--VIIVLVGNKTDLVD 128 (208)
Q Consensus 77 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~ 128 (208)
.++. ..|++|+|..+........-..++..+....+.. ..+|||.|+.|..+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 4799999998763222112234555555555432 34788889999764
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.15 E-value=6.4e-10 Score=83.25 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=42.5
Q ss_pred EEEEEEecCCchh-------------hccchhhhhcc-CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466 58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK 123 (208)
..++++|+||... ...+...|+++ .+++++|.|+...-.-.........+. ....++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4688999999642 22345667774 569999999864211111122222222 245889999999
Q ss_pred CCCcC
Q 028466 124 TDLVD 128 (208)
Q Consensus 124 ~D~~~ 128 (208)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.6e-10 Score=88.06 Aligned_cols=137 Identities=22% Similarity=0.247 Sum_probs=91.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh--cC--------------CCCCC----ccceeeeeeeEEEEEECCeEEEEEEEecC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM--YD--------------KFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~--~~--------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (208)
.++-..+|+-+|.+|||||-+.|+ ++ .+..+ .+...++.+.+..+.++.....+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 356778999999999999999986 11 11111 11123344444444444445789999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV 146 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (208)
||++|..-+-+.+.-+|..+.|+|+. ..++....-+-.+... .+.||+-++||.|..... ..+.+.+....+++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i 163 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRD--PLELLDEIEEELGI 163 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHhh--cCCceEEEeeccccccCC--hHHHHHHHHHHhCc
Confidence 99999998888888999999999997 4455433223333333 469999999999975432 24445555556665
Q ss_pred eEE
Q 028466 147 MFI 149 (208)
Q Consensus 147 ~~~ 149 (208)
..+
T Consensus 164 ~~~ 166 (528)
T COG4108 164 QCA 166 (528)
T ss_pred cee
Confidence 544
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2e-09 Score=83.87 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=60.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC--------------C--eEEEEEEEecCCch----
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--------------D--RTVRLQLWDTAGQE---- 69 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~i~D~~G~~---- 69 (208)
+++.|||.||||||||+|.++.........|..|++.....+... . ....+.|+|.+|.-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 789999999999999999999887654555666665544433221 1 12368999999932
Q ss_pred ---hhccchhhhhccCCEEEEEEeCCC
Q 028466 70 ---RFRSLIPSYIRDSSVAVIVYDVAS 93 (208)
Q Consensus 70 ---~~~~~~~~~~~~~d~~i~v~d~~~ 93 (208)
........-++.+|+++.|+++..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 344455566899999999999873
No 318
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.11 E-value=8.2e-10 Score=84.34 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 115 VIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 115 ~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
..-++|+||+|+.+..........+..+.. +++++++|+++++|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 334777899999753322344444555544 5789999999999999999999874
No 319
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.10 E-value=1.4e-10 Score=86.35 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=64.8
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
+.++|++|.|...-... ...-+|.+++|.-..-.+.++.++.-+.++.+ ++|+||.|..... ....++
T Consensus 122 ~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNKaD~~gA~-~~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNKADRPGAD-RTVRDL 189 (266)
T ss_dssp -SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE--SHHHHH-HHHHHH
T ss_pred CCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeCCChHHHH-HHHHHH
Confidence 67889999885443322 35678999999988766666655554444532 7777999964332 223333
Q ss_pred HHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 138 EAKAREL-------NVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 138 ~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
+...... ..+++.+||.++.|++++++.|.+..
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3333322 25899999999999999999998764
No 320
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.10 E-value=2.8e-10 Score=86.78 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh------
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER------ 70 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~------ 70 (208)
|+|+|.+++|||||+|+|++........+..|++.....+.+.+.. .++.++|+||.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999887755445666666555555554321 2589999999432
Q ss_pred -hccchhhhhccCCEEEEEEeCC
Q 028466 71 -FRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 71 -~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1122334467899999999874
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.2e-09 Score=79.98 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=94.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCC---------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------- 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------- 71 (208)
-.++|+|||.+|.|||||+|++...+... ....+.++......+.-++...+++++||||..++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 36899999999999999999987543321 22334455555566666777789999999993321
Q ss_pred -----------cc--------chhhhhcc--CCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCc--
Q 028466 72 -----------RS--------LIPSYIRD--SSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLV-- 127 (208)
Q Consensus 72 -----------~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~-- 127 (208)
.. .....+.+ ++.+++-+..+. .++..+ .+++..+. .-+.++-|+-|.|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence 11 11112333 455555555543 222222 12222222 225577777999964
Q ss_pred CccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 128 DKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
+++.....++++....+++.+|+-.+.+.+.=+..++.-.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv 239 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV 239 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence 3444446677777888899999988887765555444433
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.3e-09 Score=90.00 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=82.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc-----------------cceeeeeeeEEEEE---ECCeEEEEEEEecC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLSKTMY---LEDRTVRLQLWDTA 66 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D~~ 66 (208)
....++.++|+-++|||+|+..|....++.-. ++..++.....++. ..++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 45678999999999999999999866553321 11122222222222 24566789999999
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
||-+|.......++.+|++++|+|+...-.+ ..+..+....+ .+.|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml-ntEr~ikhaiq---~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML-NTERIIKHAIQ---NRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCcee-eHHHHHHHHHh---ccCcEEEEEehhHHH
Confidence 9999999999999999999999999753222 23333333332 469999999999963
No 323
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.08 E-value=8.1e-10 Score=80.46 Aligned_cols=95 Identities=24% Similarity=0.279 Sum_probs=66.2
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHc
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----REL 144 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~ 144 (208)
.+...+..+++.+|++++|+|++++..- |...+... ..+.|+++|+||+|+.+.. ........+. ...
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhc
Confidence 3577888889999999999999875311 11122111 2358999999999986432 2233333333 223
Q ss_pred CC---eEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 145 NV---MFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 145 ~~---~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+. .++.+|++++.|++++++.|.+.++
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 32 6899999999999999999999774
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.06 E-value=2.3e-09 Score=81.08 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=68.2
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE 136 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 136 (208)
++.++|+.|.|...-... ...-+|.+++|.-..-.+..+.++.-+.++.. |+|+||.|.... +....+
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A-~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGA-EKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhH-HHHHHH
Confidence 367889999986544332 24568999998876655666666655555543 777899996432 222222
Q ss_pred HHHHHHHc---------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 137 GEAKAREL---------NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 137 ~~~~~~~~---------~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.....+.. ..+++.+|+..++|++++++.|.+...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 22222211 247999999999999999999998764
No 325
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.5e-09 Score=83.18 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=103.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc----------CCCC----CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY----------DKFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (208)
+-++|.-+|+-..|||||-.+++. .+|. ...+...++++....+.+......+.-.|+|||.+|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 357899999999999999987751 1111 12234455667777777777777888899999999999
Q ss_pred chhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC---cCHHHHHHHHHHcC-----
Q 028466 74 LIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ---VSIEEGEAKARELN----- 145 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~----- 145 (208)
.......+.|+.|+|+.++|. .+.+.++.+...++..- ..+++.+||.|++++.+ .-+-+++++..+++
T Consensus 133 NMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 888888899999999999984 45555555555554431 34777789999985533 33456777777775
Q ss_pred CeEEEeecC
Q 028466 146 VMFIETSAK 154 (208)
Q Consensus 146 ~~~~~~S~~ 154 (208)
++++.-||+
T Consensus 210 ~PvI~GSAL 218 (449)
T KOG0460|consen 210 TPVIRGSAL 218 (449)
T ss_pred CCeeecchh
Confidence 467776654
No 326
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2e-09 Score=78.85 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=96.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---chhhhhccCCEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i 86 (208)
.+|+++|...+||||+-+....+..+.+... .+-+-....-.+.+.-+.+.+||.||+-.+-. -....++++.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999999887665543332111 11000011111223446799999999875433 2345689999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCcc-CcC-----HHHHHHHHHHcC-----CeEEEeec
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKR-QVS-----IEEGEAKARELN-----VMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~-~~~-----~~~~~~~~~~~~-----~~~~~~S~ 153 (208)
+|+|+.+ +-.+.+......+....+ ++..+-|.+.|.|-..+. .+. ..+......+.+ +.|+-+|.
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999975 445555555555544443 567788889999965331 111 112222222222 45777777
Q ss_pred CCCCCHHHHHHHHHHHcCCCccC
Q 028466 154 KAGFNIKALFRKIAAALPGMETL 176 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~~~~~ 176 (208)
.+..-.+.+-..+.+++++++..
T Consensus 186 yDHSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred cchHHHHHHHHHHHHHhhhchhH
Confidence 77654444444445556655543
No 327
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.03 E-value=9.2e-10 Score=88.95 Aligned_cols=159 Identities=21% Similarity=0.407 Sum_probs=119.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..++|+.|||..++|||+|+.+++.+.|.+...+..+ .+.+++..++....+.+.|.+|... ..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 4689999999999999999999999998766544444 3455556677777888889887433 45678899999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcC--ccCcCHHHHHHHHHHcC-CeEEEeecCCCCCHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVD--KRQVSIEEGEAKARELN-VMFIETSAKAGFNIKAL 162 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~ 162 (208)
|||.+.+..+++.+..+...+..+.. ...|+++++++.-... .+....++..+++.+++ +.+|++++..|-++...
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 99999999999988877776654443 4567777766544322 23344556666666554 78999999999999999
Q ss_pred HHHHHHHcCC
Q 028466 163 FRKIAAALPG 172 (208)
Q Consensus 163 ~~~l~~~~~~ 172 (208)
|..+...+-.
T Consensus 181 f~~~~~k~i~ 190 (749)
T KOG0705|consen 181 FQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHH
Confidence 9998877533
No 328
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-08 Score=74.33 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=102.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIR 80 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 80 (208)
-.-+|+++|.|.+|||||+..++.-+.........+.+.....+.+++. .+.+.|.||.-. ..+.+....+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 3579999999999999999999876654444455567788888888884 588999999432 2334555678
Q ss_pred cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCe-EEEEEeCCCCc------CccCcCHHHHHHHHHHcCCeEEEee
Q 028466 81 DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVI-IVLVGNKTDLV------DKRQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
.+|.++.|.|++..+.-.. ++..++.+--..+..+| +.+-..|..-. +-...++..+.....++.+.=-++-
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 8999999999986554433 44445544333333344 44433444322 1234456677777778766444444
Q ss_pred cCCCCCHHHHHHHHH
Q 028466 153 AKAGFNIKALFRKIA 167 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~ 167 (208)
-.+...++++.+.+.
T Consensus 219 ~ReD~t~DdfIDvi~ 233 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIE 233 (364)
T ss_pred EecCCChHHHHHHHh
Confidence 455566666666653
No 329
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.8e-09 Score=82.59 Aligned_cols=121 Identities=20% Similarity=0.281 Sum_probs=81.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECCeE-----------------------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRT----------------------------- 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------------- 57 (208)
.+.=|+++|+-..||||||+.|+...++..+. +..+.++....+..+..+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 34569999999999999999999999976443 334445555544333211
Q ss_pred ----------EEEEEEecCCchh-----------hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe
Q 028466 58 ----------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI 116 (208)
Q Consensus 58 ----------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 116 (208)
-.++|+||||.-. |.....-+...+|.+|++||+-..+--++....+..++ +..-.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHEDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcce
Confidence 2589999999432 33444556788999999999864443344444444444 44455
Q ss_pred EEEEEeCCCCcCccC
Q 028466 117 IVLVGNKTDLVDKRQ 131 (208)
Q Consensus 117 iivv~nK~D~~~~~~ 131 (208)
+-||.||.|+++..+
T Consensus 214 iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQ 228 (532)
T ss_pred eEEEeccccccCHHH
Confidence 677789999976544
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.99 E-value=5.3e-09 Score=81.15 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=88.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCC----------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---- 73 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 73 (208)
-.++|+++|++|.|||||+|.|++...... ..++..+......+..++....++++||||-.++-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999987644222 235556667777777788888999999999443111
Q ss_pred ----------chhhh------------hc--cCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 74 ----------LIPSY------------IR--DSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 74 ----------~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
....| +. .+|++++-+..+. .++..+ ...+..+. ..+.+|=|+.|.|..-
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 11111 11 3567777776653 223222 12223332 3466888889999864
Q ss_pred ccC--cCHHHHHHHHHHcCCeEEE
Q 028466 129 KRQ--VSIEEGEAKARELNVMFIE 150 (208)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~ 150 (208)
..+ .....+.+....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 332 3355667777788888874
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.97 E-value=2e-08 Score=81.11 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=77.8
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh----------hHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ----------SFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~ 126 (208)
..+.++|.+|+...+..|..++.+++++|||+++++.+ .+.+....+..+... ...+.|+||+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57899999999999999999999999999999987532 233333333443332 2257999999999997
Q ss_pred cCc-----------------c-CcCHHHHHHHHHHc------------CCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 127 VDK-----------------R-QVSIEEGEAKAREL------------NVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 127 ~~~-----------------~-~~~~~~~~~~~~~~------------~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
..+ . ......+..+.... .+.++.++|.+.+++..+|+.+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 421 0 12344444444432 12466888888999999998887653
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.96 E-value=2.7e-09 Score=75.24 Aligned_cols=96 Identities=24% Similarity=0.224 Sum_probs=65.1
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEE
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE 150 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (208)
++.+....++++|++|+|+|++++..... ..+...+. ..+.|+++|+||+|+.+.... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 34566777888999999999987533222 12222221 135899999999998542211 1111233345678999
Q ss_pred eecCCCCCHHHHHHHHHHHcCC
Q 028466 151 TSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+|++++.|++++++.|.+.++.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999988753
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=7.2e-09 Score=81.97 Aligned_cols=94 Identities=16% Similarity=0.279 Sum_probs=68.2
Q ss_pred ccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIE 150 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (208)
..+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+....+ ...........++.++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 334555689999999999998765 33355666665532 4689999999999964322 12223334566889999
Q ss_pred eecCCCCCHHHHHHHHHHHc
Q 028466 151 TSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~ 170 (208)
+|++++.|++++++.|...+
T Consensus 155 iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EEcCCCCCHHHHhhhhccce
Confidence 99999999999999997654
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.6e-08 Score=77.87 Aligned_cols=143 Identities=15% Similarity=0.235 Sum_probs=89.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCC---------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------ 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------ 73 (208)
.+.++++|++|.|||||+|.|+...+..+ ...+..+......+.-++..+.++++||||-.+.-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 59999999999999999999886644322 122444555555566677778999999999432100
Q ss_pred -------------------chhhhhc--cCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 74 -------------------LIPSYIR--DSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 74 -------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+..+. .+|++++-+..+.. ++..+. ..+..+. ..+.+|-|+.|.|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 1111222 35677777766532 222221 1222222 3477888889999864333
Q ss_pred --cCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 132 --VSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
.....+.+.+...++.+|.......
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 3355667777778888887776654
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.89 E-value=3.2e-08 Score=77.24 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=100.2
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC--------------ccceeeeeeeEEEEEECCe--------------
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------YQATIGIDFLSKTMYLEDR-------------- 56 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-------------- 56 (208)
+.+..+.+.+.|+-+.|||||.-.|..+...+. ..+..+-+.+...+-+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 345678999999999999999999886654321 1112222333333333322
Q ss_pred -------EEEEEEEecCCchhhccchhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 57 -------TVRLQLWDTAGQERFRSLIPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 57 -------~~~~~i~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
.--+.|+||.||+.|-+.+.+ +-.+.|..+++..+++. ...+......+... ...|+|++++|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a--~~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA--MELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh--hcCCEEEEEEecccC
Confidence 124789999999988765544 34568999999999863 33322222222222 369999999999997
Q ss_pred CccCcC--HHHHH----------------------HHHHHcC---CeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 128 DKRQVS--IEEGE----------------------AKARELN---VMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 128 ~~~~~~--~~~~~----------------------~~~~~~~---~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++.... .+++. ..+...+ ++++.+|+.+|+|++-+.+.+..+-
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp 338 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP 338 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence 542111 11111 1111222 4799999999999987766665443
No 336
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.6e-08 Score=80.47 Aligned_cols=139 Identities=12% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
.|-..++.+-++|+|++|+|||||++.|+..-.... ....-++ ....++..+++++.+| .....+. ...+
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPi------TvvsgK~RRiTflEcp--~Dl~~mi-DvaK 132 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI------TVVSGKTRRITFLECP--SDLHQMI-DVAK 132 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCce------EEeecceeEEEEEeCh--HHHHHHH-hHHH
Confidence 455667889999999999999999998875422111 0111111 1244666789999998 3333333 3467
Q ss_pred cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccCcCHHHHHHHH-HH------cCCeEEEe
Q 028466 81 DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQVSIEEGEAKA-RE------LNVMFIET 151 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~-~~------~~~~~~~~ 151 (208)
-+|++++++|.+- .|+- ..+++.-+..+ +.| ++-|++..|+...... ...++... .. .|+.+|.+
T Consensus 133 IaDLVlLlIdgnf--GfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFyl 206 (1077)
T COG5192 133 IADLVLLLIDGNF--GFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYL 206 (1077)
T ss_pred hhheeEEEecccc--CceehHHHHHHHHhhc---CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEe
Confidence 7999999999884 3442 23334433333 344 6778899999654222 22222211 11 16788888
Q ss_pred ecCC
Q 028466 152 SAKA 155 (208)
Q Consensus 152 S~~~ 155 (208)
|...
T Consensus 207 sgV~ 210 (1077)
T COG5192 207 SGVE 210 (1077)
T ss_pred cccc
Confidence 8754
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.85 E-value=1.9e-08 Score=79.57 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=67.4
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHcCCeEEEeecCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKARELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (208)
..++|.+++|+++....++..+..|+..+.. .++|+++|+||+|+.+..+. ............+++++.+|++++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877788888888775532 35888999999999654221 1222333445668899999999999
Q ss_pred CHHHHHHHHHHHc
Q 028466 158 NIKALFRKIAAAL 170 (208)
Q Consensus 158 ~v~~~~~~l~~~~ 170 (208)
|++++++.|...+
T Consensus 195 GideL~~~L~~ki 207 (347)
T PRK12288 195 GLEELEAALTGRI 207 (347)
T ss_pred CHHHHHHHHhhCC
Confidence 9999999998654
No 338
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.84 E-value=1.9e-08 Score=77.83 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=66.7
Q ss_pred hhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 78 YIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
.+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..+ ...........+.+++.+|++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 478999999999999887 77778888776653 3588999999999965421 12223334456789999999999
Q ss_pred CCHHHHHHHHHHH
Q 028466 157 FNIKALFRKIAAA 169 (208)
Q Consensus 157 ~~v~~~~~~l~~~ 169 (208)
.|+++++..|...
T Consensus 150 ~gi~~L~~~L~~k 162 (287)
T cd01854 150 EGLDELREYLKGK 162 (287)
T ss_pred ccHHHHHhhhccc
Confidence 9999999988753
No 339
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.9e-09 Score=78.58 Aligned_cols=184 Identities=17% Similarity=0.174 Sum_probs=117.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEE---EECCe------------------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTM---YLEDR------------------------ 56 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~---~~~~~------------------------ 56 (208)
..+++|.-+|+--.||||+++++.+- .|..+.++.+++...+... .+++.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 45799999999999999999988654 3344444555444333221 11110
Q ss_pred --------EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466 57 --------TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----RQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 57 --------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 124 (208)
...+.|+|+|||+-..........-.|+.++++..+. |++-+.+.. -++.++ +.++++-||+
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKi 189 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKI 189 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechh
Confidence 1368999999999776655555555678888777663 233333221 112221 4578888999
Q ss_pred CCcCccCc--CHHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCCccCCcccccccccccccCCCCCCC
Q 028466 125 DLVDKRQV--SIEEGEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTS 197 (208)
Q Consensus 125 D~~~~~~~--~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (208)
|+..+.+. ..+++..|.... +++++++||.-.-|++.+.++|.+.++.......... ++.-+..=+.|++-+
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~p-rlIVIRSFDVNkPG~ 266 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPP-RLIVIRSFDVNKPGS 266 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCC-cEEEEEeeccCCCCc
Confidence 99765332 234455555543 5799999999999999999999999976655544433 445555555555533
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=98.81 E-value=1.8e-08 Score=78.37 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=65.1
Q ss_pred hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (208)
+.++|.+++|+|+.+++.... +..|+..+.. .++|+++|+||+|+.+..+ ............+.+++.+|++++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 589999999999988765544 4666665543 3688999999999953322 1223344555668899999999999
Q ss_pred CHHHHHHHHHHHc
Q 028466 158 NIKALFRKIAAAL 170 (208)
Q Consensus 158 ~v~~~~~~l~~~~ 170 (208)
|++++++.|...+
T Consensus 154 gi~~L~~~l~gk~ 166 (298)
T PRK00098 154 GLDELKPLLAGKV 166 (298)
T ss_pred cHHHHHhhccCce
Confidence 9999999886543
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=1.2e-08 Score=70.75 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=37.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+++++|.+|+|||||+|++.+..... ...+..+ .....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999877642 2222223 3333444444 4789999995
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.2e-08 Score=77.84 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=101.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc--------------eee---------eeeeEEEEEEC----------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--------------TIG---------IDFLSKTMYLE---------- 54 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--------------~~~---------~~~~~~~~~~~---------- 54 (208)
-+++++++|.-.+|||||+-.|..+.......+ ..+ .+.....+++.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 378999999999999999998886654322111 111 11111111111
Q ss_pred CeEEEEEEEecCCchhhccchhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--
Q 028466 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR-- 130 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-- 130 (208)
...--++++|.+|+.+|.......+. ..|..++|+++...-.+. .++.+-.+.. .++|++++++|+|+....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhH
Confidence 11124789999999999887655444 358888999887532221 2333333332 369999999999996431
Q ss_pred ----------------------CcCHHHHHHHHHHc---C-CeEEEeecCCCCCHHHHHHHHHHHcCCCcc
Q 028466 131 ----------------------QVSIEEGEAKAREL---N-VMFIETSAKAGFNIKALFRKIAAALPGMET 175 (208)
Q Consensus 131 ----------------------~~~~~~~~~~~~~~---~-~~~~~~S~~~~~~v~~~~~~l~~~~~~~~~ 175 (208)
....+++...+.+. + .+++.+|+.+|+|+.-+...|...-+....
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~ 392 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTA 392 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCCh
Confidence 11123333333332 2 489999999999998877777665544433
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.76 E-value=2.7e-08 Score=70.22 Aligned_cols=56 Identities=25% Similarity=0.230 Sum_probs=37.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+.++|+++|.+|+|||||+|+|.+.... ....+..+.. ...+..+. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcCC
Confidence 4678999999999999999999976553 2223333332 22233322 3789999994
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=2.9e-08 Score=70.04 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=58.4
Q ss_pred hhhccCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466 77 SYIRDSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (208)
..+.++|++++|.|+.++.. ...+..++ .. ...+.|+++|+||+|+.+..+. ......+...+....+.+|++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 45789999999999997632 22233322 22 2335899999999999643221 112222222222335789999
Q ss_pred CCCCHHHHHHHHHHHcC
Q 028466 155 AGFNIKALFRKIAAALP 171 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~ 171 (208)
.+.|++++++.|.+...
T Consensus 79 ~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 79 NPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999987653
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=75.82 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=90.3
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc-eeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccc
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL 74 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 74 (208)
+.++.++++.|.+++|||+|+|-++..+....... ..+.+.....+... -.+.++|.|| ..++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 45679999999999999999999886655322222 22222222222222 3688999999 2245556
Q ss_pred hhhhhccCC---EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC----cCHHHHHH----HHHH
Q 028466 75 IPSYIRDSS---VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ----VSIEEGEA----KARE 143 (208)
Q Consensus 75 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~----~~~~ 143 (208)
...|+.+-+ -++++.|++-+ +....-....+... .++|+.+|.||+|...... .....+.. +.+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 666665543 33445555522 22222222222222 3699999999999753211 11111122 1111
Q ss_pred ---cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 144 ---LNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 144 ---~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
...+.+.+|+.++.|.++++-.|.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 12456779999999999887666543
No 346
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.74 E-value=3.1e-08 Score=70.84 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=39.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.++++++|.+|+|||||+|+|.+.... ....++.|... ..+.++. .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence 489999999999999999999987653 33344444433 3333332 5889999983
No 347
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.73 E-value=6.8e-08 Score=77.08 Aligned_cols=95 Identities=31% Similarity=0.402 Sum_probs=68.6
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHHH
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKARE 143 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~~ 143 (208)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+.+. ......+. +++.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4578888888889999999999997642 22333333332 25789999999999653 22233333 34556
Q ss_pred cCC---eEEEeecCCCCCHHHHHHHHHHH
Q 028466 144 LNV---MFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 144 ~~~---~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999999775
No 348
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-08 Score=80.38 Aligned_cols=147 Identities=19% Similarity=0.233 Sum_probs=101.2
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC--------CCCC--------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD--------KFDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
+--+|.++..-.+||||.-+++++- .+.. ..++..++++.+..++++.++++++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4457889999999999999998621 1111 11234567788888888888899999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe--EE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM--FI 149 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~ 149 (208)
+-.+.+.++.-|+++.|||++-.-..+.+.-| ++..+.+.|-+.++||+|.....- ...+...-..+++. ..
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak~l~l 189 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAKALKL 189 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCceEEE
Confidence 99999999999999999999854323333444 444456789888899999754321 22233333345543 33
Q ss_pred EeecCCCCCHH
Q 028466 150 ETSAKAGFNIK 160 (208)
Q Consensus 150 ~~S~~~~~~v~ 160 (208)
.+..-+..++.
T Consensus 190 ~lpi~eak~fn 200 (753)
T KOG0464|consen 190 QLPIGEAKGFN 200 (753)
T ss_pred Eeccccccccc
Confidence 44444555553
No 349
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.8e-07 Score=75.34 Aligned_cols=93 Identities=25% Similarity=0.303 Sum_probs=60.0
Q ss_pred EEEEEecCCch---hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466 59 RLQLWDTAGQE---RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE 135 (208)
Q Consensus 59 ~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 135 (208)
.+.++|.||.+ ....-...+..++|++|+|.++.+..... ..+++...... ++.|+++.||.|.....+...+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~---KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE---KPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc---CCcEEEEechhhhhcccHHHHH
Confidence 46788999965 44455566788999999999997532222 34444444332 4557777799998765555555
Q ss_pred HHHHHHHHcCC--------eEEEeecCC
Q 028466 136 EGEAKARELNV--------MFIETSAKA 155 (208)
Q Consensus 136 ~~~~~~~~~~~--------~~~~~S~~~ 155 (208)
.+....+++.+ .++.+|++.
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 55555555532 477888654
No 350
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.67 E-value=1.2e-07 Score=75.07 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=59.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchh---
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER--- 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~--- 70 (208)
+++.|+|.|++|||||++.|+.... .....+..|++.....+...+.. ..+.+.|.||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 44434555555555444443321 2578999999532
Q ss_pred ----hccchhhhhccCCEEEEEEeCC
Q 028466 71 ----FRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 71 ----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 3334555688999999999985
No 351
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=6.3e-08 Score=79.48 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=80.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC-----CCCC-----------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD-----KFDN-----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
+.-+|.+.-+-.+||||+-++.+.- +..+ ...+..++++.+....+....+.++++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3456788889999999999987621 0000 11112234444444434444688999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.-.+.+.++.-|+.|+|+++...-.-+...-| ++....++|.+.++||+|.....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~----rQ~~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW----RQMKRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHH----HHHHhcCCCeEEEEehhhhcCCC
Confidence 99999999999999999998743211222223 22223469999999999987654
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=8.6e-08 Score=68.62 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=39.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
..++++++|.+|+|||||+|++.+..+.. ...+..+.. ...+.++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999877632 222333333 3333333 35789999995
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=8.6e-08 Score=68.61 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=62.4
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI 149 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
.........+.++|++++|+|++++..... ..+...+ .+.|+++|+||+|+.+... .....+.....+..++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 344455677899999999999986543221 1111211 2478899999999953321 1111122233345789
Q ss_pred EeecCCCCCHHHHHHHHHHHcC
Q 028466 150 ETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.+|++++.|++++.+.|...++
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 354
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.63 E-value=9e-08 Score=73.59 Aligned_cols=86 Identities=20% Similarity=0.182 Sum_probs=65.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCch---
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQE--- 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~--- 69 (208)
..+++.|||.++||||||+|.|+.........|..|++.....+.+... ...++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4579999999999999999999988887777788888777766655322 2368999999933
Q ss_pred ----hhccchhhhhccCCEEEEEEeCCC
Q 028466 70 ----RFRSLIPSYIRDSSVAVIVYDVAS 93 (208)
Q Consensus 70 ----~~~~~~~~~~~~~d~~i~v~d~~~ 93 (208)
........-++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 233334455788999999988763
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.62 E-value=6.2e-08 Score=70.56 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=37.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC---------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+.+++++|.+|+|||||+|.|.+... .....++.| .....+.++. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence 46899999999999999999987543 222333333 3333444433 4789999993
No 356
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.3e-07 Score=77.94 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCC------------CC--CccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+.....-+++++.+-..|||||...|+..+- -+ +.+.+.+++.....+..-.+.+.++++|+|||-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3445667899999999999999999874321 11 122334444444444444455789999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhH-HH-HHHHHHhhcCCCCeEEEEEeCCCC
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNT-TK-WVEEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~-~~~~~~~~~~~~~~iivv~nK~D~ 126 (208)
+|.+.+....+-+|++++++|+.. ..... .. ..+.+. .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvve--gv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVE--GVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeecc--ccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 999999999999999999999973 23221 11 111222 23446778899993
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=1.8e-07 Score=72.43 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=41.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++++|+|.+|||||||+|+|.+... .....++.|... ..+..+. .+.++||||.-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 468999999999999999999998765 333344544443 3344433 47899999964
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.59 E-value=1.6e-07 Score=72.38 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=39.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+.++++++|.+|+|||||+|+|.+.... ....+..|.. ...+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999977643 2233443333 33344433 4789999997
No 359
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.57 E-value=2.1e-07 Score=64.48 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=53.1
Q ss_pred hhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466 75 IPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
....+..+|++++|+|+.++.+.. .+..++... ..+.|+++|+||+|+.+..+ ..+..+.....+..++.+|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345688999999999998765433 233333322 14689999999999964322 2234455556678899999
Q ss_pred cCCCCC
Q 028466 153 AKAGFN 158 (208)
Q Consensus 153 ~~~~~~ 158 (208)
+.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998764
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=3.9e-07 Score=64.16 Aligned_cols=84 Identities=19% Similarity=0.090 Sum_probs=54.9
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+..+. ......+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754442 22221 1112246899999999999543211 11122232233567899999999999999
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
++.|.+.+
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987654
No 361
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.55 E-value=2.6e-07 Score=65.03 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=38.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
...+++++|.+|+|||||+|++.+.... ...++.+.+.....+..+. .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 4578999999999999999999865532 2233333332222232332 5889999983
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.55 E-value=1.5e-06 Score=64.84 Aligned_cols=85 Identities=22% Similarity=0.169 Sum_probs=52.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC--CCCCCcc---ceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIP 76 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~ 76 (208)
+-.-|.|+|++++|||+|+|+|++. .+..... -|.++-........ +....+.++||+|...... ...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence 3467889999999999999999988 5532211 12222222211111 2335799999999664322 122
Q ss_pred hhhcc--CCEEEEEEeCCC
Q 028466 77 SYIRD--SSVAVIVYDVAS 93 (208)
Q Consensus 77 ~~~~~--~d~~i~v~d~~~ 93 (208)
..+.. +|++|+..+...
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 23333 788888777653
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=2e-07 Score=73.21 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=42.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
+.+++.|+|-+|||||||||+|.+..... ...| +.+.....+..+. .+.++||||.-.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii~ 189 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGIIP 189 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCcCC
Confidence 45889999999999999999999887732 3334 4445555555554 388999999543
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=2.4e-07 Score=65.25 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
....+++++|.+|+|||||+|.+.+... .....+..+..... ...+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence 3568899999999999999999997653 22333444433333 2232 25889999983
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=1.4e-07 Score=66.08 Aligned_cols=61 Identities=23% Similarity=0.240 Sum_probs=33.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCC------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.-.++++|++|||||||+|.|....... ......-++.....+..... ..++||||...+.
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 3468899999999999999998763211 11111112223334444332 4688999976543
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.50 E-value=4e-07 Score=70.17 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=62.7
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
......+..+|++++|+|+.++.+... ..+..+. .+.|+++|+||+|+.+... .....+.....+..++.+|
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 345667889999999999987643322 1111121 2578999999999954321 1111222233456789999
Q ss_pred cCCCCCHHHHHHHHHHHcCCC
Q 028466 153 AKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~~ 173 (208)
++++.|++++.+.|.+.+.+.
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHh
Confidence 999999999999999887554
No 367
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.4e-07 Score=70.87 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=96.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (208)
-.-++++++|.-..||||+-.++... .-.+++....++......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 44689999999999999988765411 00112222233333333343333
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh---hhHHhH--HHHHHHHHhhcCCCCeEEEEEeCCCCcC--
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR---QSFLNT--TKWVEEVRTERGSDVIIVLVGNKTDLVD-- 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~--~~~~~~~~~~~~~~~~iivv~nK~D~~~-- 128 (208)
.++++.|+||+..|.........++|+.++|+++... ..|+.- ......+....+ -...|+++||+|-..
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 5699999999999998888888999999999998532 233331 111122222222 244677789999642
Q ss_pred ccCcCHHHH----HHHHHHc------CCeEEEeecCCCCCHHHHHH
Q 028466 129 KRQVSIEEG----EAKAREL------NVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 129 ~~~~~~~~~----~~~~~~~------~~~~~~~S~~~~~~v~~~~~ 164 (208)
......++. ..+.+.. ...|+++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 223333333 3333322 25799999999999988765
No 368
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.46 E-value=1.9e-06 Score=67.45 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=95.5
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC------------------ccceeeeeeeEEEE----------------
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTM---------------- 51 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~---------------- 51 (208)
+.-++++++||.-.+|||||+-.|+.+..... +.+..+.++.-...
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 44589999999999999999998764433211 11222222211111
Q ss_pred --E-ECCeEEEEEEEecCCchhhccchhhh--hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466 52 --Y-LEDRTVRLQLWDTAGQERFRSLIPSY--IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 52 --~-~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D 125 (208)
. +.+..--++|+|.+|++.|...+-.. -.-.|...+++-++- .+-. .++.+..... .++|+++|++|+|
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLALa---L~VPVfvVVTKID 284 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLALA---LHVPVFVVVTKID 284 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhhhh---hcCcEEEEEEeec
Confidence 0 01111247899999999987654322 234588888887763 2222 2333332222 3599999999999
Q ss_pred CcCccCcCHHHHHHH---HHHc--------------------------CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 126 LVDKRQVSIEEGEAK---AREL--------------------------NVMFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
+-+.... .+..+.+ .+.. -+++|.+|..+|.|+.-+...|.-.-.+.+
T Consensus 285 MCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~ 361 (641)
T KOG0463|consen 285 MCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQ 361 (641)
T ss_pred cCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCcccc
Confidence 8654322 1111222 1111 246899999999999877666654444433
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=4.1e-06 Score=65.67 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=54.1
Q ss_pred EEEEEEEecCCchhhccc----hhhh--------hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCC
Q 028466 57 TVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 124 (208)
.+.+.|+||||....... .... -...+..++|.|++.. ...+.+ ...+.... .+--+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC---CCCEEEEECC
Confidence 367999999996432221 1111 1246788999999843 222222 12222111 2335667999
Q ss_pred CCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 125 DLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
|.... .-.+...+...++++..++ +|++++++
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 95322 3345556677788888888 77777654
No 370
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.7e-06 Score=61.37 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=96.7
Q ss_pred ceeEEEEcCCCC--cHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEE--EEEEEecCCchhhccchhhhhccCCE
Q 028466 9 KYKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--RLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 9 ~~~i~vvG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+..++|+|.+|+ ||.+|+.+|....+..+......+.+...+ ++++-| .+.+.=.+--+.+.-..........+
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicde~~lpn~~~a~pl~a 81 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICDEKFLPNAEIAEPLQA 81 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccchhccCCcccccceee
Confidence 356899999999 999999999988886655554444443333 333222 22222111111121111222344578
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-----------------------------------
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK----------------------------------- 129 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----------------------------------- 129 (208)
++.|||++....+..+..|+....-. .--.++.++||.|.++.
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg 159 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG 159 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence 99999999888888888886532111 11235667799997532
Q ss_pred -----cC----cCHHHHHHHHHHcCCeEEEeecCCC------------CCHHHHHHHHHHHc
Q 028466 130 -----RQ----VSIEEGEAKARELNVMFIETSAKAG------------FNIKALFRKIAAAL 170 (208)
Q Consensus 130 -----~~----~~~~~~~~~~~~~~~~~~~~S~~~~------------~~v~~~~~~l~~~~ 170 (208)
.+ .....+.+|+.+.++.|++.++.+. .||+.+|..|...+
T Consensus 160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 00 1123456778888999999998432 47999999987543
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=2.4e-06 Score=60.30 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=36.3
Q ss_pred EEEEEEecCCchhhccchhh--------hhccCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTAGQERFRSLIPS--------YIRDSSVAVIVYDVASRQSF-LNTTKWVEEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 126 (208)
....++|++|.......... ..-..|.+++++|+.+.... .....+..++... - ++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d-~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----D-RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----C-EEEEecccC
Confidence 46789999997644333322 23357899999998643221 1222233333321 1 556799996
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.39 E-value=2.4e-06 Score=77.84 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=69.4
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCc----cc--eeeeeeeEEEEEECCeEEEEEEEecCC----ch----hhccchhh
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QA--TIGIDFLSKTMYLEDRTVRLQLWDTAG----QE----RFRSLIPS 77 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~ 77 (208)
.+|+|++|+||||++..- +..++-.. .. +.+-+. .....+.+ +-.++||+| ++ .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999976 44443211 11 111011 11122222 456899999 21 11122333
Q ss_pred hh---------ccCCEEEEEEeCCCh-----hh----HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 78 YI---------RDSSVAVIVYDVASR-----QS----FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 78 ~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
++ +..+++|+++|+.+- +. -..+...+.++....+...|+.|++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 22 347999999998742 11 134566677777777889999999999998643
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.39 E-value=8.3e-07 Score=70.33 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=35.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.++|+|.+|||||||+|+|++...... ...+.-++.....+.+.+. ..++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 478999999999999999996644211 1111111222233334332 2489999987654
No 374
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.37 E-value=5e-07 Score=66.14 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=74.2
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh----------hHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ----------SFLNTTKWVEEVRTER-GSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~ 126 (208)
..+.++|.+|+..-+..|...+.++-.++++..++..+ .+++....+..+..+. -.+.++|++.||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 34668899999888888888888888777776665322 2333333334443322 156789999999998
Q ss_pred cCcc----------------CcCHHHHHHHHHHc----C-----C-eEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 127 VDKR----------------QVSIEEGEAKAREL----N-----V-MFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 127 ~~~~----------------~~~~~~~~~~~~~~----~-----~-~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
.++. +.+...++.+.... + + .-..+.|.+.+|+..+|..+.+.+...
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 6431 22233344444433 1 1 225577889999999999988877543
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.37 E-value=1.9e-05 Score=63.11 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=90.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC-----------------CCCCCcc-c---eeeeeee---EEEEEE-CCeEEEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD-----------------KFDNTYQ-A---TIGIDFL---SKTMYL-EDRTVRLQLW 63 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~-----------------~~~~~~~-~---~~~~~~~---~~~~~~-~~~~~~~~i~ 63 (208)
.+=|.||||-.+||||||+||-.. ..+++.. . |.+..+. ...+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 466899999999999999998522 1121110 0 1111111 122233 4566789999
Q ss_pred ecCCch-------------------hhccchh----------hhhc--cCCEEEEEEeCC--C--hhhHHhH-HHHHHHH
Q 028466 64 DTAGQE-------------------RFRSLIP----------SYIR--DSSVAVIVYDVA--S--RQSFLNT-TKWVEEV 107 (208)
Q Consensus 64 D~~G~~-------------------~~~~~~~----------~~~~--~~d~~i~v~d~~--~--~~s~~~~-~~~~~~~ 107 (208)
|+.|.- +|....+ ..+. ..-++++.-|-+ + ++.+... ++.+..+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999811 1111110 0011 123666666655 1 3344433 3344444
Q ss_pred HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC--CCCHHHHHHHHHHHc
Q 028466 108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA--GFNIKALFRKIAAAL 170 (208)
Q Consensus 108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~~~~ 170 (208)
.. .++|+++++|-.+- ..+.......++...|+++++++++.. .+.+..+++.++..+
T Consensus 177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 43 46999999998885 334456677788888999999888854 455666665555444
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.35 E-value=5.5e-06 Score=63.62 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=54.2
Q ss_pred EEEEEEEecCCchhhccchhh-------hh-----ccCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeC
Q 028466 57 TVRLQLWDTAGQERFRSLIPS-------YI-----RDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~-------~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK 123 (208)
.+.+.|+||||.......... .. ...|..++|.|++.. +.+... ..+.... .+--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence 367899999996543332211 11 137999999999743 223222 2222211 133566799
Q ss_pred CCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 124 TDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
.|.... .-.+.......++++..++ +|++++++
T Consensus 227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 997432 2344455556688887777 67776654
No 377
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=2.8e-06 Score=63.35 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=76.6
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-------hHHhHHHHHHHHH----hhcCCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-------SFLNTTKWVEEVR----TERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~----~~~~~~~~iivv~nK~D~ 126 (208)
++++.+|.+|+.+-+..|...+.++.++|||...+... +-..+++-+..+. ..-.....+|++.||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 56889999999999999999999999999999887421 1112222222221 111234668999999998
Q ss_pred cCc------------------------------cCcCHHHHHHHHHHcC-------------CeEEEeecCCCCCHHHHH
Q 028466 127 VDK------------------------------RQVSIEEGEAKARELN-------------VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 127 ~~~------------------------------~~~~~~~~~~~~~~~~-------------~~~~~~S~~~~~~v~~~~ 163 (208)
..+ ......+++.+.++.+ +-...+.|.+.+++..+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 421 1122334444444331 224667889999999999
Q ss_pred HHHHHHcCCC
Q 028466 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
+...+.+.+.
T Consensus 362 nDcrdiIqr~ 371 (379)
T KOG0099|consen 362 NDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHH
Confidence 9988887543
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.34 E-value=4.1e-06 Score=67.05 Aligned_cols=93 Identities=30% Similarity=0.419 Sum_probs=60.8
Q ss_pred hhccchhhhhccCC-EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHHHc
Q 028466 70 RFRSLIPSYIRDSS-VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKAREL 144 (208)
Q Consensus 70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~~~ 144 (208)
.|..... .+...| .+++|+|+.+.. ..|...+..... +.|+++|+||+|+.+. .....++. ..+...
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 4544333 345555 889999997632 223333333322 5789999999999643 22233333 334555
Q ss_pred CC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466 145 NV---MFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 145 ~~---~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++ .++.+||+++.|++++++.|.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 65 689999999999999999998753
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.33 E-value=1.3e-06 Score=68.82 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=53.3
Q ss_pred EEEEEEecCCchhhccc----hhhh--hccCCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
+.+.++||+|....... .... ..+.|..++|.|+..... ...+. .+.... .+--+|.||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~----~f~~~~---~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR----EFNEAV---GIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH----HHHhcC---CCCEEEEeeecCCCC-
Confidence 46899999996532221 1111 235789999999975322 22222 222111 123455699997432
Q ss_pred CcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 131 QVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
.-.+...+...+.++..++ +|++++++.
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2234445555688887777 788887654
No 380
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.32 E-value=1.7e-06 Score=67.06 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=65.3
Q ss_pred cCCch-hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH
Q 028466 65 TAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE 143 (208)
Q Consensus 65 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (208)
.|||= .-.......+..+|++++|+|+.++.+... .++.... .+.|+++|.||.|+.+... .........+
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 45542 223345566889999999999986643222 1122222 1578999999999854211 1112222234
Q ss_pred cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 144 LNVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
.+..++.+|++++.|++++.+.|.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 466789999999999999999998877543
No 381
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.31 E-value=0.00011 Score=51.21 Aligned_cols=146 Identities=16% Similarity=0.260 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecC-Cch--------------h---
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQE--------------R--- 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~--------------~--- 70 (208)
.+||.|.|+|||||||++.++...--...+ ...+ +...++.-+++..-|.|.|+. |.. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 489999999999999999987632111111 1111 222333344555556666655 211 1
Q ss_pred ----hc----cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH
Q 028466 71 ----FR----SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR 142 (208)
Q Consensus 71 ----~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 142 (208)
+. ....+.++.+|++| +|--.|-.+. ...+...+.......+|+|.++.+.+..+ . .+..+
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~P-------~-v~~ik 150 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRHP-------L-VQRIK 150 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCCh-------H-HHHhh
Confidence 11 12233455677665 4554442222 23344444444456788888777665421 1 22233
Q ss_pred HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 143 ELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 143 ~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+..++. .+.+|=+.+++.+...+.
T Consensus 151 ~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 KLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 33433332 566666688888877764
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=66.91 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=36.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
..+++|++|||||||+|+|..... .+....+.=++.....+.+.+. -.|+||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 678899999999999999985322 2222222222334444555432 2488999976653
No 383
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.27 E-value=1.9e-06 Score=65.21 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=35.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCC------ccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.-.++++|.+|||||||+|+|.+...... ...+.-++.....+.+.+ ..++||||...+
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 34688999999999999999986533211 111111122222333333 268999997554
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.25 E-value=1.6e-05 Score=62.41 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred EEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
....+++|.|......+...+.. ..+++|.|+|+.+..... .......++.. .+ +||+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence 45678899997765555544322 248899999996432211 11111222321 11 66679999976
Q ss_pred ccCcCHHHHHHHHHHcC--CeEEEee
Q 028466 129 KRQVSIEEGEAKARELN--VMFIETS 152 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~S 152 (208)
+ .+.++...+..+ ++++.++
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec
Confidence 4 246666666664 5666544
No 385
>PRK12289 GTPase RsgA; Reviewed
Probab=98.25 E-value=2.2e-06 Score=68.03 Aligned_cols=58 Identities=24% Similarity=0.146 Sum_probs=35.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCC-ccce-----eeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.++|+|++|||||||+|.|+....... ..+. .-++.....+.+.++ ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 489999999999999999986543211 1111 001222233344332 268999997543
No 386
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.22 E-value=3.2e-05 Score=57.79 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=58.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhccC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
-++.++|.|.+||||++..+.+-..+.......+.........+.+ -++.+.|.||.-+ ....+....+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999986544322222222233333333444 4689999999432 233555667889
Q ss_pred CEEEEEEeCCChhhHHh
Q 028466 83 SVAVIVYDVASRQSFLN 99 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~ 99 (208)
..+++|.|+..|-+...
T Consensus 138 nli~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKK 154 (358)
T ss_pred cEEEEEeeccCcccHHH
Confidence 99999999987654443
No 387
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.22 E-value=2.5e-05 Score=61.28 Aligned_cols=89 Identities=30% Similarity=0.287 Sum_probs=53.6
Q ss_pred EEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
+...++.+.|..........+.. ..|++|-|+|+.+-..... ......++... - +||+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D-~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----D-VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----c-EEEEecccCC
Confidence 45678888887655443333322 3588999999975322111 12222333221 1 6667999998
Q ss_pred CccCcCHHHHHHHHHHcC--CeEEEeecC
Q 028466 128 DKRQVSIEEGEAKARELN--VMFIETSAK 154 (208)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~S~~ 154 (208)
+... ....+...+..+ ++++.++..
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 7653 556677777665 678877773
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.22 E-value=6.9e-06 Score=65.54 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=56.1
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
..++|.+++|+++..+-....+..++..+.. .+.+.++|+||+|+.+..+......... ..+.+++.+|++++.|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 5789999999999633233345555444433 2466688899999975411111122222 3467899999999999
Q ss_pred HHHHHHHHH
Q 028466 159 IKALFRKIA 167 (208)
Q Consensus 159 v~~~~~~l~ 167 (208)
++++..+|.
T Consensus 185 l~~L~~~L~ 193 (356)
T PRK01889 185 LDVLAAWLS 193 (356)
T ss_pred HHHHHHHhh
Confidence 999999885
No 389
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.21 E-value=1e-05 Score=58.27 Aligned_cols=81 Identities=26% Similarity=0.208 Sum_probs=43.7
Q ss_pred EEEEEEecCCchhhccch-----hhhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSLI-----PSYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
....|+.+.|........ ....-..+.+|.|+|+.+......+...+ .++. .. . ++|+||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A----D-vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA----D-VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T-----S-EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc----C-EEEEeccccCChh-
Confidence 467788888865544441 11123468999999997643333333222 2232 22 1 6667999997654
Q ss_pred cCHHHHHHHHHHcC
Q 028466 132 VSIEEGEAKARELN 145 (208)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (208)
...++.++..++.+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 22356666666654
No 390
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=6e-06 Score=62.19 Aligned_cols=61 Identities=15% Similarity=0.362 Sum_probs=45.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCc----cceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
-.++|+-||..|.|||||+++|.+-++.... .+.+........+.-.+..++++|+||.|.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 3589999999999999999999988775432 334444444444555677789999999993
No 391
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=6.5e-05 Score=53.84 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
++|+|+|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999864
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=3.9e-06 Score=67.08 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=37.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.++.++|.+|||||||+|+|+.... .....+..|.+. ..+..+. .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999987432 223334444333 3333422 356999999653
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=98.16 E-value=3.6e-06 Score=67.39 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++.++|.+|||||||+|+|+.... .....|+.|.+ ...+.+++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCcc
Confidence 35799999999999999999985431 12233333333 334444332 4699999974
No 394
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.14 E-value=0.00013 Score=60.16 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred EEEEEecCCch-------------hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCC
Q 028466 59 RLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKT 124 (208)
Q Consensus 59 ~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 124 (208)
++.++|.||.- ....+...|+.+..++|+|+.- .+.+.-+.....+..... .+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 67899999933 2334567789999999998753 344444444444443332 456689999999
Q ss_pred CCcCccCcCHHHHHHHHHH
Q 028466 125 DLVDKRQVSIEEGEAKARE 143 (208)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~ 143 (208)
|+.+..-.+..++++....
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9987766677777777654
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=4.7e-05 Score=60.77 Aligned_cols=141 Identities=11% Similarity=0.089 Sum_probs=70.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeee----------------EEEEEEC-----------CeEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFL----------------SKTMYLE-----------DRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~----------------~~~~~~~-----------~~~~ 58 (208)
.-.++|+|++|+||||++..|...-. .......++.+.+ ....... -...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 45788999999999999998864311 0011111111111 0000000 0124
Q ss_pred EEEEEecCCchhhccchh---hhh---ccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCC--CCeEEEEEeCCCCcCc
Q 028466 59 RLQLWDTAGQERFRSLIP---SYI---RDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGS--DVIIVLVGNKTDLVDK 129 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~---~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~ 129 (208)
.+.++||+|......... ..+ ...+-.++|++++. .+...++...+......... ..+--+|.||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~- 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS- 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence 689999999664333221 112 22345688999874 34444333222222110000 012245569999643
Q ss_pred cCcCHHHHHHHHHHcCCeEEEeec
Q 028466 130 RQVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
..-.+...+...+.++..++.
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEec
Confidence 234556666677776655553
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=8.9e-06 Score=63.07 Aligned_cols=61 Identities=23% Similarity=0.187 Sum_probs=37.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc------ceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.-.++++|++|+|||||+|.|++........ .+..++.....+...+. ..++||||...+.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 3578999999999999999998764432111 11112222333444322 3589999986653
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.06 E-value=1.9e-05 Score=64.01 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+++|++|+||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999875
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.3e-05 Score=62.48 Aligned_cols=60 Identities=22% Similarity=0.125 Sum_probs=36.2
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-c-----eeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-A-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
+...++++|++|+|||||+|.|++........ + +.-++.....+...+. ..++||||...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 34568999999999999999998664422111 1 0011122233333332 36899999754
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.00 E-value=2.7e-05 Score=55.42 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=63.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEec-CCc---------------------
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQ--------------------- 68 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 68 (208)
+|+|.|++|+|||||+.+++..-... ..+..+ +....+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987432110 111212 11222223333344444444 221
Q ss_pred -hhhcc----chhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCC-CCcCccCcCHHHHHHHH
Q 028466 69 -ERFRS----LIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKT-DLVDKRQVSIEEGEAKA 141 (208)
Q Consensus 69 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~-D~~~~~~~~~~~~~~~~ 141 (208)
+.|.. .....+..+| ++|+|--.+ ++. ...|...+......++|+|.++.+. +. ..+.+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence 11111 1122224455 677775533 221 2334444444444678888887665 32 1234444
Q ss_pred HHcCCeEEEeecCCCCCH
Q 028466 142 RELNVMFIETSAKAGFNI 159 (208)
Q Consensus 142 ~~~~~~~~~~S~~~~~~v 159 (208)
+..++.+++++..+++.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 555688888887777654
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00022 Score=59.20 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=47.3
Q ss_pred EEEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 57 TVRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.+.+.|+||+|......... .... ....++|++.+. +...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~-- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG-- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc--
Confidence 36789999999643322111 1111 234566677652 333444444444321 34567789999732
Q ss_pred CcCHHHHHHHHHHcCCeEEEeec
Q 028466 131 QVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
..-.+.......+.++..++.
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEeC
Confidence 234666666677776655553
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.97 E-value=8.6e-06 Score=66.09 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=42.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
.+.|.+||-|||||||+||.|.+.+.. .+..|+.|..+.... +.. .+-++|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC---CceecCCCCcc
Confidence 489999999999999999999998764 344566655554433 332 57899999953
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=0.0001 Score=51.37 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=25.0
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA 92 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
.+.+.|+||+|.... ...++..+|-+|+|...+
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCC
Confidence 367899999886432 234788999999998875
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.94 E-value=0.00016 Score=51.73 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=44.2
Q ss_pred EEEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.+.+.++|++|...+.. ....+ ....|.+++|+|+...... .++...+....+ ..-+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 34688899999743221 11111 2348999999998644322 233333332222 245666999974321
Q ss_pred CcCHHHHHHHHHHcCCeEE
Q 028466 131 QVSIEEGEAKARELNVMFI 149 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~ 149 (208)
..+...+...++++.
T Consensus 156 ----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ----GAALSIRAVTGKPIK 170 (173)
T ss_pred ----chhhhhHHHHCcCeE
Confidence 122235555555543
No 404
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.93 E-value=0.0001 Score=53.83 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=45.9
Q ss_pred EEEEEEecCCchhhccc----hhhh--hccCCEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
+.+.++||+|....... ...+ ....+-+++|.+++.. +....+..++ .... . --+|.||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~--~-~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG--I-DGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS--T-CEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc--C-ceEEEEeecCCCC-
Confidence 46899999995543321 1111 2256789999999843 2222222222 2211 1 1344599996322
Q ss_pred CcCHHHHHHHHHHcCCeEEEee
Q 028466 131 QVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S 152 (208)
.-.+...+...+.++-.++
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEE
T ss_pred ---cccceeHHHHhCCCeEEEE
Confidence 3456666777787765555
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.89 E-value=6.4e-05 Score=42.79 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=30.6
Q ss_pred cCCEEEEEEeCCC--hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466 81 DSSVAVIVYDVAS--RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 81 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 125 (208)
-.++++|++|++. +.+++.+...+..++... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 4689999999984 457788888888888765 3799999999998
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.87 E-value=0.00012 Score=56.22 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=67.2
Q ss_pred chhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEee
Q 028466 74 LIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
+.+.-..+.|-.++|+.+.+|+--.. +..++- +.... ++..++++||+|+.+..+....+........++.++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv-~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLV-LAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHH-HHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 33444566888888888888754443 444433 33333 344566679999976654443456667777899999999
Q ss_pred cCCCCCHHHHHHHHHHHcCCC
Q 028466 153 AKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~~ 173 (208)
++++++++++.+.+...+.-+
T Consensus 149 ~~~~~~~~~l~~~l~~~~svl 169 (301)
T COG1162 149 AKNGDGLEELAELLAGKITVL 169 (301)
T ss_pred CcCcccHHHHHHHhcCCeEEE
Confidence 999999999999988775433
No 407
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.7e-05 Score=61.98 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=71.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC------------CCCC----CccceeeeeeeEEEEE--------------ECCeEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD------------KFDN----TYQATIGIDFLSKTMY--------------LEDRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~------------~~~~----~~~~~~~~~~~~~~~~--------------~~~~~~ 58 (208)
--++.++.+-..|||||-..|... .|.+ +-++.+++.-....+. .++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 346788899999999999988632 1111 1122223222222111 123457
Q ss_pred EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 126 (208)
-++++|.|||-+|.+.+...++-.|+.++|+|.-+.--.+ .+..+.+... ..+.-+++.||+|.
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~---ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA---ERIKPVLVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH---hhccceEEeehhhH
Confidence 7899999999999999999999999999999987531111 2222222221 22334566799996
No 408
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.82 E-value=0.00013 Score=50.35 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred EEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC
Q 028466 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS 93 (208)
Q Consensus 14 vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (208)
.-|..|+|||++--.+...-.. ...+..-++... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3477899999987655321000 001111111110 001111679999999743 334456788999999999986
Q ss_pred hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 94 RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
..++......+..+.... ...++.+|+|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 345555555555554433 345677888999853
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=0.00015 Score=57.93 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=80.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeEE-----------------EEEEC----------CeEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSK-----------------TMYLE----------DRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~ 58 (208)
.-.|++|||.||||||-+-.|-..-. ......-+++|.+.. .+..+ -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45789999999999998887653322 111112222222111 00000 0124
Q ss_pred EEEEEecCCchhhccc----hhhhhcc--CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466 59 RLQLWDTAGQERFRSL----IPSYIRD--SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 132 (208)
.++++||.|...+... ...++.. ..-+.+|++++. ....+++.+..+.... .--+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~----i~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP----IDGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC----cceeEEEcccccC----
Confidence 6899999997654442 2333333 345556788773 3455566555554321 1234459999632
Q ss_pred CHHHHHHHHHHcCCeEEEeec--CCCCCHHHH-HHHHHHHcCCCccC
Q 028466 133 SIEEGEAKARELNVMFIETSA--KAGFNIKAL-FRKIAAALPGMETL 176 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~S~--~~~~~v~~~-~~~l~~~~~~~~~~ 176 (208)
..-.......+.+.++..++. .=.+++... -++|.+.+.+....
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence 233445555555655433332 223333322 34555555444333
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0004 Score=55.76 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=46.3
Q ss_pred EEEEEEecCCchhhccc----hhhhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSL----IPSYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|....... ....+ ...+.+++|.|++.. ...+...+..+... .+--+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 57899999996532221 22222 235678889998622 22233333333321 12234559999643
Q ss_pred cCHHHHHHHHHHcCCeEEEee
Q 028466 132 VSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (208)
..-.+...+...++++..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23355666666777665444
No 411
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00017 Score=64.93 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=65.5
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCcc-ceeeeeeeEEEEEECC-eEEEEEEEecCC----ch----hhccchhhh---
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLED-RTVRLQLWDTAG----QE----RFRSLIPSY--- 78 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~D~~G----~~----~~~~~~~~~--- 78 (208)
-+|+|++|+||||++.. .+.+|+-... ...+..... +.+++- -.-.-.++||.| ++ .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 47899999999999973 3333321100 000000000 112221 011456889988 21 111222222
Q ss_pred ------hccCCEEEEEEeCCCh-----hh----HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 79 ------IRDSSVAVIVYDVASR-----QS----FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 79 ------~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
.+..+++|+..|+.+- .. ...+...+.++........|++|+.||.|+...
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 3467999999998742 11 122445566666666678999999999999764
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=0.00043 Score=56.27 Aligned_cols=135 Identities=14% Similarity=0.115 Sum_probs=68.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC---CCCccceeeeeeeE-----------E----EE-EEC-----------CeE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLS-----------K----TM-YLE-----------DRT 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~-----------~----~~-~~~-----------~~~ 57 (208)
+.-.++++|+.|+||||++..|.+... ........+.+.+. . .+ ... -..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999997764311 00000000000000 0 00 000 012
Q ss_pred EEEEEEecCCchhhcc----chhhhh--ccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
..+.++||+|...... ....+. ...+-.++|.|++. .+.+. +++..+.. . .+-=+|.||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~---~-~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG---H-GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC---C-CCCEEEEEeeeCCC--
Confidence 3578999999553222 111211 22456778899873 33333 33333321 1 12235569999643
Q ss_pred CcCHHHHHHHHHHcCCeEEEeec
Q 028466 131 QVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
..-.+...+...++++..++.
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEEC
Confidence 244556666777777665553
No 413
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.72 E-value=6.3e-05 Score=57.66 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=38.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.++.+.|+|-||+|||||+|.+..... .....+++++..... +.+... -.+.+.||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence 479999999999999999998763322 122334444444332 222222 25889999994
No 414
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.72 E-value=0.00065 Score=54.01 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=53.5
Q ss_pred EEEEEEecCCchhhccchhhhh-------ccCCEEEEEEeCCChhh--H-------Hh-------------HH-HHHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYI-------RDSSVAVIVYDVASRQS--F-------LN-------------TT-KWVEEV 107 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~~-------------~~-~~~~~~ 107 (208)
....++++.|......+...+. -..|++|.|+|+.+... + .. +. .+..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4578889999776555544431 14588999999974211 0 00 01 112222
Q ss_pred HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cC--CeEEEeecCCCCCHHHHHH
Q 028466 108 RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LN--VMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 108 ~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~S~~~~~~v~~~~~ 164 (208)
.. .- +|++||+|+..+.+ ...+++..+. +. ++++++. ........+++
T Consensus 173 ~~-----AD-~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 AC-----AD-LVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred Hh-----CC-EEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 21 11 66679999976543 4455666665 33 3566554 33345555554
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.70 E-value=0.00061 Score=50.42 Aligned_cols=63 Identities=27% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEEEecC-CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466 58 VRLQLWDTA-GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~-G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 126 (208)
+.+.++||- |.+.|. +...+.+|.+|.|.|.+. +++...+.. ..+.+..+ =.++.+|+||.|-
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence 345666663 333333 334678999999999984 455554443 33443332 3788999999995
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=9.5e-05 Score=60.41 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=46.8
Q ss_pred EEEEEEecCCchhhccch------hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSLI------PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
..+.|+||+|........ .......|.+++|+|++... ........+.... ...-+|.||.|....
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~-- 247 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAK-- 247 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCc--
Confidence 368999999965433221 11234678999999997532 2222222222111 123456699996321
Q ss_pred cCHHHHHHHHHHcCCeEEEeec
Q 028466 132 VSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.-.+.......+.++..++.
T Consensus 248 --~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 --GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --ccHHHHHHHHHCcCEEEEec
Confidence 23445555566666655544
No 417
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.69 E-value=0.00015 Score=52.62 Aligned_cols=113 Identities=15% Similarity=0.196 Sum_probs=61.2
Q ss_pred EEEEEecCCchhhcc---chhhh---hccC---CEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 59 RLQLWDTAGQERFRS---LIPSY---IRDS---SVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~---~~~~~---~~~~---d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
.+.++|+|||-+... ..+.. +++. -.++++.|..= .++...+-..+..+.......+|-|=|.+|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 578999999765322 11111 2221 23445555421 12333333333333333334688888889999864
Q ss_pred ccC--------------------cC---------HHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 129 KRQ--------------------VS---------IEEGEAKARELN-VMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 129 ~~~--------------------~~---------~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
... .. ...+..+..+++ +.|++....+.++++.++..|-..++
T Consensus 179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 310 00 111223333445 47899999999999988888766553
No 418
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00054 Score=54.73 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=46.6
Q ss_pred EEEEEEecCCchhhccc----hhhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSL----IPSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|....... ...+.. ..+.+++|.++. ....++...+..+.. . .+--+|.||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~---l-~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE---I-PIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc---C-CCCEEEEEcccCCC---
Confidence 57899999997433221 122222 346777787764 223333333332221 1 12245569999632
Q ss_pred cCHHHHHHHHHHcCCeEEEeec
Q 028466 132 VSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
..-.+...+...++++..++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec
Confidence 244566666777877665554
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.65 E-value=0.0005 Score=44.71 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=49.6
Q ss_pred EEEEc-CCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 12 i~vvG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
|++.| ..|+||||+...+...-.. ...+..-++. +.. +.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 4589999998765421110 1112221111 111 57899999986432 23366788999999998
Q ss_pred CCChhhHHhHHHHHH
Q 028466 91 VASRQSFLNTTKWVE 105 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~ 105 (208)
.+ ..++..+..++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 85 456666666554
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.001 Score=54.43 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=46.0
Q ss_pred EEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... ..... .-..+.+++|.|+...+ ........+.... ...-+|.||.|-...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~r-- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDAR-- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCccc--
Confidence 5689999999543211 11111 22567889999987532 2222233333211 123455699995221
Q ss_pred cCHHHHHHHHHHcCCeEEEeec
Q 028466 132 VSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.-.+.......++++..+..
T Consensus 256 --gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 22355566666777655554
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.61 E-value=0.00099 Score=54.41 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=47.5
Q ss_pred EEEEEEecCCchhhccc----hhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSL----IPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|....... ... ..-+.|.+++|+|+...+ ....+...+.... ...-+|.||.|-...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~-- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR-- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc--
Confidence 56899999995332221 111 123578899999987542 2233333333222 123455699995221
Q ss_pred cCHHHHHHHHHHcCCeEEEeec
Q 028466 132 VSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.-.+...+...++++..+..
T Consensus 255 --~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 --GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 22356666677777665554
No 422
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.59 E-value=5.6e-05 Score=59.72 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=42.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+-+++.|+|-+++||||+||.|.....-. .....+++.....+.++. .+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCce
Confidence 46899999999999999999998776532 133344445566666665 5889999994
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.00069 Score=55.40 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=47.3
Q ss_pred EEEEEEecCCchhhc----cchhhhhc---cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
+.+.|+||+|..... .....++. .-+-.++|++++. ....+.+.+..+... + +--+|.||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL---P-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence 578999999965332 12222333 2346677888863 223333333333211 1 12456699997332
Q ss_pred CcCHHHHHHHHHHcCCeEEEeec
Q 028466 131 QVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.-.+...+...++++..++.
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeC
Confidence 33566777777877665553
No 424
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.57 E-value=0.00085 Score=43.97 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=58.9
Q ss_pred EEEEc-CCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 12 i~vvG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
|+++| ..|+||||+.-.|-..-.......+.-+|.... . + ..+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~-~--~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---F-G--DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---C-C--CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 45554 457999998776542211110111111111111 0 0 16899999985433 34456788999999998
Q ss_pred CCChhhHHhHHHHHHHHHhhcCC-CCeEEEEEeC
Q 028466 91 VASRQSFLNTTKWVEEVRTERGS-DVIIVLVGNK 123 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~-~~~iivv~nK 123 (208)
.+ ..+......++..+...... ...+.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 76 35666677777766654433 3456676674
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.56 E-value=0.001 Score=42.26 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-hhhhhccCCEEEEEEe
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYD 90 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 90 (208)
+++.|..|+||||+...+...-.. ......-.+ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999877533211 111111111 5889999976433321 1445678899999998
Q ss_pred CCChhhHHhHHH
Q 028466 91 VASRQSFLNTTK 102 (208)
Q Consensus 91 ~~~~~s~~~~~~ 102 (208)
... .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 764 33443333
No 426
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.00073 Score=52.13 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=64.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------- 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------- 70 (208)
.+-..++|+|++|.|||+++++|...+.... .... ....|..+.+|..+.
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3446799999999999999999987654322 1111 113455666654221
Q ss_pred --------hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcC-CCCeEEEEEeC
Q 028466 71 --------FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERG-SDVIIVLVGNK 123 (208)
Q Consensus 71 --------~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK 123 (208)
........++...+=++++|--. ..+......+++.++...+ -.+|++.|++.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 12223345667788888888543 1344556666666665544 56888888754
No 427
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0019 Score=56.12 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=46.4
Q ss_pred EEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCC-hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVAS-RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
+.+.|+||+|...... ..... ....+-.++|.|++. .+.+.++. ..+......+ +-=+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~-i~glIlTKLDEt~~- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGED-VDGCIITKLDEATH- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCC-CCEEEEeccCCCCC-
Confidence 4689999999332211 11111 223466788999873 33344333 3332211111 22455699996432
Q ss_pred CcCHHHHHHHHHHcCCeEEEeec
Q 028466 131 QVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.-.+.......++++..++.
T Consensus 339 ---~G~iL~i~~~~~lPI~yit~ 358 (767)
T PRK14723 339 ---LGPALDTVIRHRLPVHYVST 358 (767)
T ss_pred ---ccHHHHHHHHHCCCeEEEec
Confidence 33556666677777665553
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0011 Score=53.70 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=70.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC-CC----------CCcc-----------ceeeeeeeEEE-E-----EECCeEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK-FD----------NTYQ-----------ATIGIDFLSKT-M-----YLEDRTVRL 60 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~-~~----------~~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~ 60 (208)
..-++++|++||||||++..|.... .. +.+. ...+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999886321 00 0000 00011111000 0 001123578
Q ss_pred EEEecCCchhhcc----chhhhhc-----cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 61 ~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
.++||+|...... .+..++. ..+-.++|+|++.. ...+...+..+... .+--+|.||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~----~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL----NYRRILLTKLDEADF-- 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence 9999999643221 1122221 23467889998743 22333333322111 122455599996322
Q ss_pred cCHHHHHHHHHHcCCeEEEeec--CCCCCHHH
Q 028466 132 VSIEEGEAKARELNVMFIETSA--KAGFNIKA 161 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~--~~~~~v~~ 161 (208)
.-.+...+...+.++..++. .=.+++..
T Consensus 375 --~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 33456666667776655554 22344443
No 429
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.45 E-value=0.012 Score=41.74 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=98.2
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEe-cCCchhhccchhhhhccC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD-TAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~~ 82 (208)
++......|++||..+.++..|.+.+...+.. .. .++..-- .|=..+..... ...
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----~~----------------l~Vh~a~sLPLp~e~~~lR----prI 65 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE----FK----------------LKVHLAKSLPLPSENNNLR----PRI 65 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhccc----ee----------------EEEEEeccCCCcccccCCC----cee
Confidence 33456788999999999999999999853211 00 0111110 01011111111 246
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
|.++|++|.....++...+.-+..+....-. -.+.++++.....+...+...++.+++..+..+++.+.-...++...+
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence 9999999999888888877766555433222 235666677777677888899999999999999999999999988888
Q ss_pred HHHHHHHc
Q 028466 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
-.-|.+++
T Consensus 145 AqRLL~~l 152 (176)
T PF11111_consen 145 AQRLLRML 152 (176)
T ss_pred HHHHHHHH
Confidence 88887776
No 430
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0025 Score=48.92 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=47.2
Q ss_pred EEEEEEEecCCchhhccc----hhhhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 57 TVRLQLWDTAGQERFRSL----IPSYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.+.+.++||+|....... +..++ ...+-.++|.|++. ....+..++..+.. . .+--+|.||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~---~-~~~~~I~TKlDet~~- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD---I-HIDGIVFTKFDETAS- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC---C-CCCEEEEEeecCCCC-
Confidence 357899999996532221 11222 24567899999873 22233333333332 1 222455599997432
Q ss_pred CcCHHHHHHHHHHcCCeEEEee
Q 028466 131 QVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~S 152 (208)
.-.+...+...+.++..++
T Consensus 227 ---~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 ---SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred ---ccHHHHHHHHHCcCEEEEe
Confidence 3355566666677665554
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.0018 Score=46.54 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.=.++|+|+.|+|||||++.+.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34688999999999999998886543
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.39 E-value=0.00018 Score=42.01 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
..+|.|+.|+|||||++.+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998763
No 433
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0028 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.--++|+|+.|+||||.+..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999998763
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.38 E-value=0.00015 Score=48.51 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.37 E-value=0.0017 Score=44.36 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.-.++|+|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999987554
No 436
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00033 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+..-|+|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35666778899999999999999754
No 437
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0028 Score=51.20 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=46.3
Q ss_pred EEEEEEEecCCchhhcc----chhhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 57 TVRLQLWDTAGQERFRS----LIPSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
.+.+.++||+|...... ....++.. .+-.++|.|++.. ...+.+.+..+... .+--+|.||.|-...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence 35789999999643221 11222222 2257899999843 33334433333211 122455699996332
Q ss_pred cCcCHHHHHHHHHHcCCeEEEee
Q 028466 130 RQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
.-.+...+...+.++..++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT 346 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe
Confidence 3355566666677665444
No 438
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.31 E-value=0.00028 Score=50.35 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.1
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+.+...-+.|+|.+|+|||||++++...
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 3445567899999999999999999855
No 439
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.0002 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
+|+|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 440
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00012 Score=57.75 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=29.8
Q ss_pred eEEEEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHhHHH
Q 028466 56 RTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLNTTK 102 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~ 102 (208)
.++.++|+||.|-..-....-. -.-..|-+|+|.|++-....+.+..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 4578999999994432221111 1235799999999987655555443
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00026 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-++|+|++|||||||++.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999998875543
No 442
>PRK07261 topology modulation protein; Provisional
Probab=97.29 E-value=0.00021 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
+|+|+|++|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999988643
No 443
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00027 Score=55.71 Aligned_cols=96 Identities=21% Similarity=0.127 Sum_probs=65.1
Q ss_pred EEecCCch-hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHH
Q 028466 62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAK 140 (208)
Q Consensus 62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 140 (208)
+.+.||+. .+.......+..+|+++-|.|+-+|.+...- .+..+. .+.+.++|+||.|+.+... .....+.+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v----~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIV----KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHH----ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 33446644 6677778889999999999999988544321 111122 1344588899999976433 45555666
Q ss_pred HHHcCCeEEEeecCCCCCHHHHHH
Q 028466 141 ARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 141 ~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
..+.+...+.+++..+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 666677778889998888776664
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.24 E-value=0.00038 Score=50.94 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.=.++|+|++|||||||++.+-+-+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 34688999999999999999865544
No 445
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.23 E-value=0.0012 Score=48.89 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=36.5
Q ss_pred EEEEEEecCCchhhcc------chhhhhccCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466 58 VRLQLWDTAGQERFRS------LIPSYIRDSSVAVIVYDVA------SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~------~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 125 (208)
..+.++|+|||-++-. ...++++..|.-+.++.+. +|..+- -..+..+....-...|-+=|..|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence 4688999999764322 1233345566666655554 343332 2222222222223466666779999
Q ss_pred Cc
Q 028466 126 LV 127 (208)
Q Consensus 126 ~~ 127 (208)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 85
No 446
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00027 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.||+|+|+||+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998765
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.21 E-value=0.00027 Score=52.45 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
-++|+|++|||||||+|-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999775443
No 448
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.21 E-value=0.00038 Score=51.34 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+.+..-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 466788999999999999999998753
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.21 E-value=0.00022 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999755
No 450
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.20 E-value=0.00029 Score=48.58 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q 028466 12 LVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~ 31 (208)
|+++|++|+|||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 451
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.14 E-value=0.006 Score=43.77 Aligned_cols=85 Identities=21% Similarity=0.190 Sum_probs=58.2
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE 135 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 135 (208)
..+.+.|+|||+... ......+..+|.++++...+. .+...+..++..+... +.++.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 346899999996532 234456788999999998873 4555566665555432 4667888999997432 345
Q ss_pred HHHHHHHHcCCeEE
Q 028466 136 EGEAKARELNVMFI 149 (208)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (208)
++++++.+++++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 66777777787654
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.11 E-value=0.00045 Score=47.28 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999887664
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.10 E-value=0.0033 Score=46.09 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|+|+|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 454
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00057 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
+..-++|.||+|+|||||++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568889999999999999998766
No 455
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.07 E-value=0.00058 Score=40.99 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988754
No 456
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0017 Score=46.38 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCeE--EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 134 IEEGEAKARELNVMF--IETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~--~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
..-++.++-+..+-+ -++||++.+-+.+++..|.+...+-
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 344455555545444 3689999999999999999887544
No 457
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.03 E-value=0.0071 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999987764
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.0008 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-+++|+|.+|+|||||+|.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999986543
No 459
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.02 E-value=0.002 Score=46.15 Aligned_cols=44 Identities=32% Similarity=0.295 Sum_probs=27.6
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
|++++|+|+.++.+-.. ..+...+. ....+.|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532211 12222211 2223589999999999964
No 460
>PRK14530 adenylate kinase; Provisional
Probab=97.02 E-value=0.00062 Score=50.54 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
.+|+|+|++||||||+.+.|.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999885
No 461
>PRK08233 hypothetical protein; Provisional
Probab=97.01 E-value=0.00072 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+..-|+|.|.+|+|||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3477889999999999999998743
No 462
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00074 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCC
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~ 34 (208)
++++|++|||||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999998876544
No 463
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.99 E-value=0.0063 Score=51.07 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q 028466 12 LVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~ 31 (208)
+++.||+|+||||.++.|..
T Consensus 48 LlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45569999999999998763
No 464
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.98 E-value=0.0035 Score=49.91 Aligned_cols=123 Identities=16% Similarity=0.057 Sum_probs=74.3
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM 147 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
.|.......+..+|++|-|.|+-||.+-. +++.+... .. .+...|+|+||.|+++. +.....+..+.+++..-
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~~-gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv 209 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---AH-GNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTV 209 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---cc-CCceEEEEeehhccCCH-HHHHHHHHHHHhhCCcc
Confidence 45556666678899999999999985533 34444322 22 34778999999999763 33344555555554434
Q ss_pred EEEeecCCCCC--------HHHHHHHHHHHcCCCccCCcccccccccccccCCCCCCC
Q 028466 148 FIETSAKAGFN--------IKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTNTS 197 (208)
Q Consensus 148 ~~~~S~~~~~~--------v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (208)
.+..|.....+ ..--.+.+...+-.......-...-++++-+-+..+++|
T Consensus 210 ~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSS 267 (435)
T KOG2484|consen 210 AFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSS 267 (435)
T ss_pred eeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhH
Confidence 44444433322 223445555666555555555555667777777777655
No 465
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.98 E-value=0.00066 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.|.|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 466
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.97 E-value=0.0033 Score=42.82 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 45889999999999999988754
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.94 E-value=0.00074 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.=|+|+|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 458889999999999999998653
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.94 E-value=0.00077 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999754
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.94 E-value=0.00078 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999875
No 470
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.92 E-value=0.031 Score=39.83 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=50.6
Q ss_pred EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE 138 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 138 (208)
.+.|+|+|+.... .....+..+|.+|++.+.+. .++..+..++..+.... .....+|+|+.+..... ......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6899999975433 34455788999999998864 45555555555554321 23466788999864321 122233
Q ss_pred HHHHHcCCeEE
Q 028466 139 AKARELNVMFI 149 (208)
Q Consensus 139 ~~~~~~~~~~~ 149 (208)
.+...++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566544
No 471
>PRK06217 hypothetical protein; Validated
Probab=96.92 E-value=0.0008 Score=48.65 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998744
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.92 E-value=0.00084 Score=48.67 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 473
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.0013 Score=50.51 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.0
Q ss_pred EEEEEEEecCCchhhccchhhhhc--------cCCEEEEEEeCCC
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIR--------DSSVAVIVYDVAS 93 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~ 93 (208)
++..+++.|.|......+...|.. .-|++|-|+|+-+
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 356788899998776655544422 2489999999864
No 474
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00079 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
....+|+|.|.||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 567899999999999999999986
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.89 E-value=0.00093 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
.-.++|+|+.|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999875
No 476
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.00081 Score=49.22 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
--.+++||+|||||||++.|-.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3468999999999999998743
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.88 E-value=0.00099 Score=45.12 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~ 35 (208)
-.++|+|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999998765443
No 478
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.88 E-value=0.0053 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
-+.|+|.++||||||++++...
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHH
Confidence 3679999999999999998643
No 479
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.87 E-value=0.00098 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
No 480
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00089 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.86 E-value=0.00088 Score=48.15 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.84 E-value=0.0011 Score=48.93 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+...|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988753
No 483
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.84 E-value=0.0014 Score=46.98 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
|.++.. ..-|++.|.+|+||||+.+.+..
T Consensus 1 ~~~~~~--~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 1 MQMKPN--GYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCC--CCEEEEEcCCCCCHHHHHHHHHH
Confidence 555553 36899999999999999998763
No 484
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.82 E-value=0.02 Score=44.45 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
.|+|.|.+|+||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68899999999999999984
No 485
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0013 Score=52.90 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=51.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh----cCCC------CCCccc-----------eeeeeeeEEEEEE-------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM----YDKF------DNTYQA-----------TIGIDFLSKTMYL------------- 53 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~----~~~~------~~~~~~-----------~~~~~~~~~~~~~------------- 53 (208)
++..|+++|..|+||||..-.|. .... .+.|.| ..+++++.....-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999887653 1111 111111 1112222211000
Q ss_pred CCeEEEEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHh
Q 028466 54 EDRTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLN 99 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~ 99 (208)
....+.+.|+||+|-......... ..-+.|=+++|.|+.-.+....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 012357999999995443332222 1346789999999986544433
No 486
>PRK03839 putative kinase; Provisional
Probab=96.82 E-value=0.0011 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
+|+|+|.+|+||||+.++|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 487
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.81 E-value=0.00055 Score=54.35 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
++-+.+-|.++|-|++||||+||+|...++-......-++..-....-... +-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkr----IfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKR----IFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhc----eeEecCCC
No 488
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.80 E-value=0.0011 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999875
No 489
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.80 E-value=0.0012 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.=.++|+|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 34689999999999999997654
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.79 E-value=0.0011 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 491
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.78 E-value=0.0077 Score=47.92 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
...+|+|.|+.|+|||||++.|+..-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 35789999999999999999998653
No 492
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.78 E-value=0.014 Score=48.53 Aligned_cols=85 Identities=8% Similarity=-0.011 Sum_probs=42.6
Q ss_pred EEEEEEeCCChh---hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 84 VAVIVYDVASRQ---SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 84 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
.+|+|=|+-+-- ..+.++..+..+.++ ...|+|++++-+-..+.........+.+-...++..+....-...-++
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~--g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSI--GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK 273 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhc--CCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence 457887776532 233334444422222 357788888766553221111111122223445666666666666666
Q ss_pred HHHHHHHHHc
Q 028466 161 ALFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
+.+..|....
T Consensus 274 K~L~ric~~e 283 (634)
T KOG1970|consen 274 KFLKRICRIE 283 (634)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 493
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.77 E-value=0.0013 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=21.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
..++++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3489999999999999999988754
No 494
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.77 E-value=0.0015 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
..++|+|+|++||||||+...|.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999875
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.76 E-value=0.0012 Score=47.70 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
..|+|+|++||||||+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999887
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.74 E-value=0.0012 Score=48.30 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|.|.|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 497
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00081 Score=50.47 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=93.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhc----c
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR----D 81 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~----~ 81 (208)
.++..|++.|..+. |++|++...+.-. ...++...+|........+ ..--.++|+.+|......+..--+. .
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 46778888887654 8899887765432 2345555555554433322 1223578999887655443322111 2
Q ss_pred CCEEEEEEeCCChhhH-HhHHHHHHHHH----------------------hh--------c-------CCCCeEEEEEeC
Q 028466 82 SSVAVIVYDVASRQSF-LNTTKWVEEVR----------------------TE--------R-------GSDVIIVLVGNK 123 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~----------------------~~--------~-------~~~~~iivv~nK 123 (208)
.=.+|++.|+++++.+ ..++..+..++ +. . ...+|+++|+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 2467889999987543 11221111111 00 0 123689999999
Q ss_pred CCCcCccCc-----CHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 124 TDLVDKRQV-----SIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 124 ~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
.|.....+. ...-.+..+..+|+.++..|++-..-.+.+.+.+.+...+
T Consensus 200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG 253 (363)
T KOG3929|consen 200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFG 253 (363)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcC
Confidence 998654332 1234455666778877777887655555555555555433
No 498
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.72 E-value=0.01 Score=45.53 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=42.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
-|+|.|+.|+||||+++.++..-.... ....+++- ..++...+ ..++.+....| ..|.......++..-=+|++-.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~-~~iitiEd-p~E~~~~~-~~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vgE 157 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPE-KNIITVED-PVEYQIPG-INQVQVNEKAG-LTFARGLRAILRQDPDIIMVGE 157 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCC-CeEEEECC-CceecCCC-ceEEEeCCcCC-cCHHHHHHHHhccCCCEEEecc
Confidence 488999999999999998875432211 11111111 11111222 11233222111 2355555556665444556666
Q ss_pred CCChhhHH
Q 028466 91 VASRQSFL 98 (208)
Q Consensus 91 ~~~~~s~~ 98 (208)
+.+++++.
T Consensus 158 iR~~e~a~ 165 (264)
T cd01129 158 IRDAETAE 165 (264)
T ss_pred CCCHHHHH
Confidence 66665544
No 499
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.70 E-value=0.002 Score=47.38 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988754
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.70 E-value=0.0014 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998763
Done!