Query 028466
Match_columns 208
No_of_seqs 132 out of 1778
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 7.3E-46 2.5E-50 273.9 21.0 199 6-208 10-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 5.7E-38 2E-42 230.5 21.5 173 1-174 1-173 (206)
3 1vg8_A RAS-related protein RAB 100.0 7.1E-37 2.4E-41 224.6 17.2 172 1-174 1-177 (207)
4 3cpj_B GTP-binding protein YPT 100.0 1.1E-35 3.6E-40 221.1 21.3 172 7-178 11-182 (223)
5 2bov_A RAla, RAS-related prote 100.0 1.7E-35 5.7E-40 217.0 19.3 167 6-173 11-178 (206)
6 2efe_B Small GTP-binding prote 100.0 1.5E-34 5.1E-39 207.8 23.4 171 4-174 7-177 (181)
7 1z0f_A RAB14, member RAS oncog 100.0 1.6E-34 5.4E-39 207.1 22.7 170 2-171 8-177 (179)
8 1r2q_A RAS-related protein RAB 100.0 2.2E-34 7.5E-39 204.6 22.7 167 6-172 3-169 (170)
9 1ek0_A Protein (GTP-binding pr 100.0 3.3E-34 1.1E-38 203.6 22.7 166 7-172 1-169 (170)
10 2y8e_A RAB-protein 6, GH09086P 100.0 2.8E-34 9.6E-39 205.8 22.1 167 6-172 11-177 (179)
11 2a5j_A RAS-related protein RAB 100.0 3.7E-34 1.3E-38 207.8 22.5 169 4-172 16-184 (191)
12 3tkl_A RAS-related protein RAB 100.0 6.3E-34 2.2E-38 207.0 23.3 167 7-173 14-180 (196)
13 1z0j_A RAB-22, RAS-related pro 100.0 8.9E-34 3.1E-38 201.5 23.5 167 6-172 3-169 (170)
14 2bme_A RAB4A, RAS-related prot 100.0 2.6E-34 8.9E-39 207.4 20.6 167 6-172 7-173 (186)
15 2fg5_A RAB-22B, RAS-related pr 100.0 4.2E-34 1.4E-38 207.7 21.4 170 4-173 18-187 (192)
16 2fu5_C RAS-related protein RAB 100.0 4.1E-35 1.4E-39 211.2 15.9 166 7-172 6-171 (183)
17 2ew1_A RAS-related protein RAB 100.0 5E-34 1.7E-38 208.8 21.9 166 7-172 24-189 (201)
18 3t5g_A GTP-binding protein RHE 100.0 2.9E-34 1E-38 206.4 20.0 169 5-174 2-171 (181)
19 2hup_A RAS-related protein RAB 100.0 2.2E-34 7.6E-39 210.7 19.6 166 7-172 27-193 (201)
20 2gf9_A RAS-related protein RAB 100.0 1.1E-33 3.7E-38 205.0 23.1 167 5-171 18-184 (189)
21 1z08_A RAS-related protein RAB 100.0 3.1E-34 1.1E-38 204.0 19.4 165 7-171 4-168 (170)
22 2g6b_A RAS-related protein RAB 100.0 9.8E-34 3.3E-38 203.3 21.9 169 5-173 6-175 (180)
23 2fn4_A P23, RAS-related protei 100.0 6.3E-34 2.2E-38 204.3 20.7 167 5-172 5-172 (181)
24 2il1_A RAB12; G-protein, GDP, 100.0 4.8E-34 1.7E-38 207.4 20.3 169 3-171 20-189 (192)
25 2hxs_A RAB-26, RAS-related pro 100.0 4.8E-34 1.6E-38 204.6 19.7 169 6-174 3-175 (178)
26 2o52_A RAS-related protein RAB 100.0 3.8E-34 1.3E-38 209.3 19.3 167 6-172 22-188 (200)
27 3kkq_A RAS-related protein M-R 100.0 1.2E-33 4.1E-38 203.5 21.6 167 4-171 13-181 (183)
28 2oil_A CATX-8, RAS-related pro 100.0 2E-33 6.7E-38 204.2 22.6 166 6-171 22-187 (193)
29 2j0v_A RAC-like GTP-binding pr 100.0 2.5E-34 8.7E-39 211.9 17.6 174 2-177 2-185 (212)
30 3bc1_A RAS-related protein RAB 100.0 2E-33 6.8E-38 203.9 21.7 172 1-172 3-185 (195)
31 3tw8_B RAS-related protein RAB 100.0 8.2E-34 2.8E-38 203.7 19.2 166 7-173 7-172 (181)
32 1z06_A RAS-related protein RAB 100.0 1.7E-33 5.9E-38 203.9 20.9 166 6-171 17-187 (189)
33 1z2a_A RAS-related protein RAB 100.0 1.5E-33 5.1E-38 200.0 20.2 164 7-171 3-166 (168)
34 3cbq_A GTP-binding protein REM 100.0 1.1E-33 3.6E-38 206.2 19.7 171 3-173 17-189 (195)
35 2gf0_A GTP-binding protein DI- 100.0 2.3E-33 7.8E-38 204.6 21.3 166 7-174 6-173 (199)
36 1zbd_A Rabphilin-3A; G protein 100.0 4E-33 1.4E-37 204.1 22.6 166 7-172 6-171 (203)
37 1c1y_A RAS-related protein RAP 100.0 3E-33 1E-37 198.3 21.1 164 7-171 1-166 (167)
38 2p5s_A RAS and EF-hand domain 100.0 1.5E-33 5.1E-38 205.9 20.0 167 6-172 25-197 (199)
39 1g16_A RAS-related protein SEC 100.0 1.4E-33 4.7E-38 200.5 19.0 164 8-172 2-165 (170)
40 3oes_A GTPase rhebl1; small GT 100.0 3.8E-34 1.3E-38 209.4 16.4 171 4-175 19-190 (201)
41 3c5c_A RAS-like protein 12; GD 100.0 1.6E-33 5.6E-38 203.9 19.3 166 4-171 16-185 (187)
42 3dz8_A RAS-related protein RAB 100.0 3.5E-34 1.2E-38 207.9 15.6 165 7-171 21-185 (191)
43 1x3s_A RAS-related protein RAB 100.0 6.5E-33 2.2E-37 201.5 22.0 170 7-177 13-183 (195)
44 1u8z_A RAS-related protein RAL 100.0 6.2E-33 2.1E-37 196.6 21.0 164 7-171 2-166 (168)
45 2f7s_A C25KG, RAS-related prot 100.0 6.9E-34 2.4E-38 210.3 16.3 167 6-172 22-199 (217)
46 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.1E-32 3.7E-37 197.3 21.8 166 6-172 4-174 (177)
47 3q3j_B RHO-related GTP-binding 100.0 2.9E-33 1E-37 206.7 19.1 171 3-175 21-206 (214)
48 3ihw_A Centg3; RAS, centaurin, 100.0 7.1E-33 2.4E-37 200.0 20.1 162 4-172 15-180 (184)
49 2atv_A RERG, RAS-like estrogen 100.0 4.9E-33 1.7E-37 202.7 19.2 169 1-171 20-190 (196)
50 3clv_A RAB5 protein, putative; 100.0 2.2E-32 7.7E-37 199.8 22.7 165 4-171 2-203 (208)
51 1kao_A RAP2A; GTP-binding prot 100.0 8.2E-33 2.8E-37 195.8 19.3 163 7-170 1-164 (167)
52 3q85_A GTP-binding protein REM 100.0 8.5E-33 2.9E-37 196.5 19.3 163 9-171 2-166 (169)
53 2atx_A Small GTP binding prote 100.0 1.1E-32 3.6E-37 200.5 20.1 169 1-171 10-192 (194)
54 3cph_A RAS-related protein SEC 100.0 1E-32 3.6E-37 203.2 20.2 166 7-173 18-183 (213)
55 3reg_A RHO-like small GTPase; 100.0 2.2E-32 7.7E-37 198.8 21.5 166 6-173 20-189 (194)
56 4dsu_A GTPase KRAS, isoform 2B 100.0 1E-32 3.6E-37 199.3 19.4 166 7-174 2-168 (189)
57 2a9k_A RAS-related protein RAL 100.0 2.7E-32 9.1E-37 196.8 21.2 166 5-171 14-180 (187)
58 4djt_A GTP-binding nuclear pro 100.0 9.3E-33 3.2E-37 204.3 19.0 177 7-183 9-186 (218)
59 2nzj_A GTP-binding protein REM 100.0 1.3E-32 4.4E-37 196.5 18.5 164 7-171 2-168 (175)
60 2iwr_A Centaurin gamma 1; ANK 100.0 3.6E-32 1.2E-36 195.0 20.8 162 4-172 2-169 (178)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.1E-32 1.4E-36 195.7 21.0 167 6-174 2-182 (186)
62 1ky3_A GTP-binding protein YPT 100.0 1.6E-32 5.5E-37 197.1 18.1 170 1-171 1-177 (182)
63 2erx_A GTP-binding protein DI- 100.0 8.2E-32 2.8E-36 191.6 20.8 164 8-172 2-167 (172)
64 2q3h_A RAS homolog gene family 100.0 3.3E-32 1.1E-36 198.9 19.1 167 5-173 16-196 (201)
65 3l0i_B RAS-related protein RAB 100.0 1.3E-34 4.4E-39 211.6 6.2 166 7-172 31-196 (199)
66 3q72_A GTP-binding protein RAD 100.0 5.3E-32 1.8E-36 191.8 19.6 161 9-171 2-163 (166)
67 2yc2_C IFT27, small RAB-relate 100.0 5E-33 1.7E-37 204.0 14.5 166 7-172 18-192 (208)
68 3con_A GTPase NRAS; structural 100.0 7.6E-32 2.6E-36 195.3 20.0 167 4-172 16-183 (190)
69 2g3y_A GTP-binding protein GEM 100.0 4.1E-32 1.4E-36 199.8 18.6 166 5-171 33-202 (211)
70 2ce2_X GTPase HRAS; signaling 100.0 3E-31 1E-35 187.4 21.5 163 7-171 1-164 (166)
71 1m7b_A RND3/RHOE small GTP-bin 100.0 7.5E-32 2.6E-36 194.5 18.7 164 6-171 4-182 (184)
72 1gwn_A RHO-related GTP-binding 100.0 9E-32 3.1E-36 197.5 18.7 163 7-171 26-203 (205)
73 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-32 5.8E-37 197.2 13.8 166 4-171 3-180 (182)
74 2fv8_A H6, RHO-related GTP-bin 100.0 5E-31 1.7E-35 193.7 20.8 164 7-172 23-200 (207)
75 3gj0_A GTP-binding nuclear pro 100.0 4.8E-32 1.6E-36 201.0 15.5 170 4-176 10-179 (221)
76 2j1l_A RHO-related GTP-binding 100.0 1.7E-31 5.7E-36 197.2 18.1 165 7-173 32-210 (214)
77 2gco_A H9, RHO-related GTP-bin 100.0 5.5E-31 1.9E-35 192.6 20.5 163 7-171 23-199 (201)
78 4gzl_A RAS-related C3 botulinu 100.0 4.4E-31 1.5E-35 193.6 18.7 162 7-170 28-203 (204)
79 3t1o_A Gliding protein MGLA; G 100.0 9.7E-32 3.3E-36 195.5 13.7 165 4-172 9-192 (198)
80 2cjw_A GTP-binding protein GEM 100.0 2.5E-30 8.5E-35 187.9 20.6 164 7-171 4-171 (192)
81 4bas_A ADP-ribosylation factor 100.0 3E-31 1E-35 193.3 14.8 164 4-173 12-190 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 8.1E-30 2.8E-34 186.1 20.9 166 8-173 4-169 (199)
83 2h57_A ADP-ribosylation factor 100.0 8E-30 2.7E-34 184.7 19.0 162 6-173 18-188 (190)
84 1zd9_A ADP-ribosylation factor 100.0 1.3E-30 4.4E-35 188.7 14.5 161 6-172 19-185 (188)
85 1oix_A RAS-related protein RAB 100.0 4.5E-29 1.5E-33 181.1 22.2 164 7-170 27-190 (191)
86 1f6b_A SAR1; gtpases, N-termin 100.0 8.1E-30 2.8E-34 186.0 17.4 157 7-170 23-197 (198)
87 1zj6_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 183.1 17.7 163 7-176 14-182 (187)
88 1r8s_A ADP-ribosylation factor 100.0 1.5E-30 5.1E-35 184.0 12.5 155 10-171 1-161 (164)
89 2b6h_A ADP-ribosylation factor 100.0 2E-30 6.9E-35 188.3 13.3 159 6-171 26-190 (192)
90 1upt_A ARL1, ADP-ribosylation 100.0 5.7E-30 2E-34 182.1 15.1 158 8-172 6-169 (171)
91 1ksh_A ARF-like protein 2; sma 100.0 3.1E-29 1.1E-33 180.9 19.0 160 7-173 16-181 (186)
92 1m2o_B GTP-binding protein SAR 100.0 2.3E-29 8E-34 182.4 17.8 156 7-169 21-189 (190)
93 2h17_A ADP-ribosylation factor 100.0 1.1E-29 3.7E-34 182.7 15.7 158 5-169 17-180 (181)
94 1fzq_A ADP-ribosylation factor 100.0 3.4E-29 1.2E-33 180.2 16.0 159 7-172 14-178 (181)
95 2zej_A Dardarin, leucine-rich 100.0 3.9E-30 1.3E-34 185.6 11.0 165 9-174 2-180 (184)
96 3llu_A RAS-related GTP-binding 100.0 2.9E-29 9.8E-34 182.8 14.0 164 4-170 15-195 (196)
97 2x77_A ADP-ribosylation factor 100.0 6.1E-30 2.1E-34 185.1 10.0 159 7-172 20-184 (189)
98 2wkq_A NPH1-1, RAS-related C3 100.0 2.9E-28 9.9E-33 190.8 20.1 163 8-172 154-330 (332)
99 2wji_A Ferrous iron transport 100.0 1.5E-28 5.1E-33 174.3 16.2 155 7-170 1-163 (165)
100 3th5_A RAS-related C3 botulinu 99.9 3.1E-31 1.1E-35 194.3 0.0 162 7-170 28-203 (204)
101 1moz_A ARL1, ADP-ribosylation 100.0 2.4E-28 8.3E-33 175.6 15.1 158 7-171 16-179 (183)
102 3c5h_A Glucocorticoid receptor 100.0 3.5E-29 1.2E-33 189.5 8.6 166 3-170 13-253 (255)
103 2qu8_A Putative nucleolar GTP- 100.0 1.9E-27 6.6E-32 177.1 17.5 165 6-173 26-206 (228)
104 2lkc_A Translation initiation 100.0 6.3E-28 2.2E-32 172.6 13.0 155 7-173 6-172 (178)
105 2fh5_B SR-beta, signal recogni 100.0 3.4E-27 1.2E-31 173.9 17.0 161 7-170 5-214 (214)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 2.8E-27 9.4E-32 183.5 16.7 161 8-172 2-181 (307)
107 3o47_A ADP-ribosylation factor 100.0 9.8E-28 3.3E-32 187.6 14.1 159 7-172 163-327 (329)
108 2wjg_A FEOB, ferrous iron tran 99.9 2.7E-27 9.3E-32 170.9 13.8 161 5-174 3-171 (188)
109 3lvq_E ARF-GAP with SH3 domain 99.9 2E-27 7E-32 195.6 13.8 167 7-180 320-492 (497)
110 1svi_A GTP-binding protein YSX 99.9 3.2E-27 1.1E-31 171.5 12.9 161 4-171 18-194 (195)
111 3iev_A GTP-binding protein ERA 99.9 1.3E-25 4.3E-30 174.2 18.9 169 4-177 5-187 (308)
112 2dyk_A GTP-binding protein; GT 99.9 1.5E-26 5.1E-31 162.8 12.5 150 10-170 2-160 (161)
113 2gj8_A MNME, tRNA modification 99.9 9.7E-27 3.3E-31 166.0 11.4 155 8-172 3-166 (172)
114 3a1s_A Iron(II) transport prot 99.9 3.1E-26 1.1E-30 173.4 14.5 156 7-171 3-166 (258)
115 2cxx_A Probable GTP-binding pr 99.9 5.8E-27 2E-31 169.3 10.0 156 10-174 2-186 (190)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 4.4E-27 1.5E-31 181.3 9.1 156 11-173 1-175 (331)
117 3dpu_A RAB family protein; roc 99.9 5.4E-27 1.8E-31 194.5 9.6 167 5-175 37-211 (535)
118 3i8s_A Ferrous iron transport 99.9 1.2E-26 4.3E-31 177.1 10.3 158 7-173 1-170 (274)
119 3pqc_A Probable GTP-binding pr 99.9 1.5E-25 5E-30 162.5 15.0 159 4-172 18-194 (195)
120 3iby_A Ferrous iron transport 99.9 4.2E-26 1.4E-30 172.4 10.8 151 10-169 2-164 (256)
121 3b1v_A Ferrous iron uptake tra 99.9 4.8E-26 1.6E-30 173.3 10.4 154 9-172 3-164 (272)
122 3k53_A Ferrous iron transport 99.9 1.7E-25 5.8E-30 170.7 12.9 159 7-173 1-167 (271)
123 4dhe_A Probable GTP-binding pr 99.9 1.4E-25 4.6E-30 166.3 11.0 164 5-174 25-213 (223)
124 1wf3_A GTP-binding protein; GT 99.9 1E-24 3.4E-29 168.4 15.1 163 1-174 1-175 (301)
125 1nrj_B SR-beta, signal recogni 99.9 4.9E-26 1.7E-30 168.1 6.4 147 3-158 6-170 (218)
126 3gee_A MNME, tRNA modification 99.9 3.5E-24 1.2E-28 174.4 13.0 157 8-171 232-397 (476)
127 3qq5_A Small GTP-binding prote 99.9 6.6E-25 2.3E-29 175.9 8.3 160 5-173 30-197 (423)
128 2hjg_A GTP-binding protein ENG 99.9 2.3E-24 7.8E-29 174.6 11.5 162 7-174 173-351 (436)
129 2e87_A Hypothetical protein PH 99.9 4.5E-23 1.5E-27 163.0 16.8 161 7-172 165-336 (357)
130 1s0u_A EIF-2-gamma, translatio 99.9 5.5E-23 1.9E-27 165.2 17.5 169 3-173 2-199 (408)
131 4dcu_A GTP-binding protein ENG 99.9 6.1E-24 2.1E-28 173.0 11.3 165 7-177 193-374 (456)
132 1mky_A Probable GTP-binding pr 99.9 1.3E-23 4.4E-28 170.3 12.4 154 10-173 2-167 (439)
133 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-23 3.9E-28 164.7 11.5 160 11-175 160-333 (342)
134 1wb1_A Translation elongation 99.9 3.9E-23 1.3E-27 168.9 14.8 158 5-171 15-188 (482)
135 1xzp_A Probable tRNA modificat 99.9 6.6E-23 2.2E-27 167.0 13.6 152 9-171 243-404 (482)
136 3sjy_A Translation initiation 99.9 6.9E-22 2.4E-26 158.5 19.3 167 6-174 5-194 (403)
137 3j2k_7 ERF3, eukaryotic polype 99.9 1.1E-22 3.6E-27 164.7 14.2 153 7-164 15-217 (439)
138 2hjg_A GTP-binding protein ENG 99.9 5.9E-24 2E-28 172.2 6.9 176 9-195 3-188 (436)
139 1kk1_A EIF2gamma; initiation o 99.9 3E-22 1E-26 161.0 16.0 165 7-173 8-201 (410)
140 3cb4_D GTP-binding protein LEP 99.9 4E-22 1.4E-26 165.9 16.7 161 8-174 3-184 (599)
141 2ywe_A GTP-binding protein LEP 99.9 4.9E-22 1.7E-26 165.2 16.8 162 7-174 4-186 (600)
142 3t5d_A Septin-7; GTP-binding p 99.9 5.9E-23 2E-27 156.8 9.8 166 3-172 2-204 (274)
143 2xtp_A GTPase IMAP family memb 99.9 2.3E-22 7.9E-27 152.4 13.0 163 7-173 20-209 (260)
144 1ega_A Protein (GTP-binding pr 99.9 5E-22 1.7E-26 153.5 15.0 162 6-174 5-177 (301)
145 3lxx_A GTPase IMAP family memb 99.9 5.7E-22 1.9E-26 148.5 14.5 162 7-172 27-214 (239)
146 3lxw_A GTPase IMAP family memb 99.9 3.2E-22 1.1E-26 150.5 12.3 167 4-172 16-208 (247)
147 3izy_P Translation initiation 99.9 2E-24 6.7E-29 177.4 0.1 162 8-174 3-170 (537)
148 2qtf_A Protein HFLX, GTP-bindi 99.9 1.4E-21 5E-26 154.2 16.2 160 9-171 178-353 (364)
149 3p26_A Elongation factor 1 alp 99.9 4E-22 1.4E-26 163.3 13.0 150 8-161 32-227 (483)
150 3geh_A MNME, tRNA modification 99.9 7.6E-23 2.6E-27 165.9 8.4 155 8-174 223-386 (462)
151 4dcu_A GTP-binding protein ENG 99.9 4.3E-23 1.5E-27 168.0 6.7 178 7-195 21-208 (456)
152 1cip_A Protein (guanine nucleo 99.9 2.3E-21 7.8E-26 152.2 14.4 121 49-171 186-343 (353)
153 1jny_A EF-1-alpha, elongation 99.9 1.1E-22 3.8E-27 164.6 6.9 155 6-163 3-204 (435)
154 1zun_B Sulfate adenylate trans 99.9 2.8E-21 9.6E-26 156.4 14.1 151 7-162 22-214 (434)
155 3ohm_A Guanine nucleotide-bind 99.9 3E-21 1E-25 149.6 13.0 123 48-172 159-318 (327)
156 2ged_A SR-beta, signal recogni 99.9 7.9E-22 2.7E-26 142.7 9.0 116 7-131 46-173 (193)
157 2elf_A Protein translation elo 99.9 1.2E-21 4.2E-26 155.0 10.5 146 11-172 23-180 (370)
158 1d2e_A Elongation factor TU (E 99.9 5.2E-21 1.8E-25 153.1 13.7 159 8-172 2-195 (397)
159 1mky_A Probable GTP-binding pr 99.9 1.7E-20 5.8E-25 152.0 16.8 161 8-174 179-357 (439)
160 1g7s_A Translation initiation 99.9 4.6E-21 1.6E-25 159.6 13.5 158 7-171 3-217 (594)
161 2c78_A Elongation factor TU-A; 99.9 1.9E-21 6.6E-26 156.1 10.8 160 7-172 9-212 (405)
162 3tr5_A RF-3, peptide chain rel 99.9 7.5E-21 2.6E-25 156.6 14.3 115 8-128 12-148 (528)
163 1r5b_A Eukaryotic peptide chai 99.9 1.4E-22 4.9E-27 165.1 3.5 155 7-163 41-243 (467)
164 1zo1_I IF2, translation initia 99.9 2.7E-23 9.3E-28 169.3 -1.0 157 7-169 2-164 (501)
165 3izq_1 HBS1P, elongation facto 99.9 1.5E-21 5.2E-26 163.4 9.2 152 7-162 165-362 (611)
166 2qag_A Septin-2, protein NEDD5 99.8 6.9E-22 2.4E-26 156.2 5.2 157 8-170 36-231 (361)
167 1f60_A Elongation factor EEF1A 99.8 8.5E-22 2.9E-26 160.2 5.5 151 7-162 5-202 (458)
168 4fid_A G protein alpha subunit 99.8 2.9E-20 9.8E-25 144.6 12.0 116 57-172 160-328 (340)
169 3mca_A HBS1, elongation factor 99.8 3.8E-22 1.3E-26 166.5 1.1 160 7-171 175-396 (592)
170 2xtz_A Guanine nucleotide-bind 99.8 2.4E-20 8.3E-25 146.4 11.2 116 56-171 181-344 (354)
171 3avx_A Elongation factor TS, e 99.8 2.1E-20 7E-25 162.9 10.8 162 7-172 294-486 (1289)
172 1pui_A ENGB, probable GTP-bind 99.8 7.2E-20 2.5E-24 134.1 11.9 157 7-172 24-199 (210)
173 1azs_C GS-alpha; complex (lyas 99.8 1.2E-19 4.3E-24 144.0 13.9 120 50-171 211-384 (402)
174 3def_A T7I23.11 protein; chlor 99.8 3.6E-19 1.2E-23 135.0 15.0 123 7-132 34-169 (262)
175 2aka_B Dynamin-1; fusion prote 99.8 1.5E-20 5.2E-25 145.0 6.3 160 7-169 24-250 (299)
176 2dy1_A Elongation factor G; tr 99.8 7.6E-19 2.6E-23 148.6 14.8 121 1-127 1-139 (665)
177 2h5e_A Peptide chain release f 99.8 8.9E-18 3.1E-22 138.4 17.0 115 8-128 12-148 (529)
178 1udx_A The GTP-binding protein 99.8 2.4E-18 8.3E-23 137.6 12.8 162 10-175 158-328 (416)
179 1dar_A EF-G, elongation factor 99.8 8.4E-18 2.9E-22 142.7 16.7 116 7-128 10-143 (691)
180 1h65_A Chloroplast outer envel 99.8 6.5E-18 2.2E-22 128.6 14.5 122 7-131 37-171 (270)
181 2qnr_A Septin-2, protein NEDD5 99.8 3.1E-19 1.1E-23 137.7 5.9 161 7-172 16-214 (301)
182 1jwy_B Dynamin A GTPase domain 99.8 3.2E-18 1.1E-22 132.9 10.8 165 7-174 22-264 (315)
183 2j69_A Bacterial dynamin-like 99.8 6.6E-18 2.3E-22 143.5 13.4 161 8-171 68-324 (695)
184 1wxq_A GTP-binding protein; st 99.8 3E-19 1E-23 142.5 4.8 85 10-94 1-114 (397)
185 2xex_A Elongation factor G; GT 99.8 3.7E-17 1.3E-21 138.9 17.6 117 6-128 7-141 (693)
186 2rdo_7 EF-G, elongation factor 99.8 4.4E-17 1.5E-21 138.6 18.0 119 6-128 7-148 (704)
187 3t34_A Dynamin-related protein 99.8 5.9E-19 2E-23 139.6 5.9 156 8-165 33-254 (360)
188 2qag_C Septin-7; cell cycle, c 99.7 3.4E-18 1.2E-22 136.8 9.3 161 7-171 29-226 (418)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.3E-18 4.5E-23 134.3 6.5 135 24-169 32-170 (301)
190 1zcb_A G alpha I/13; GTP-bindi 99.7 1.2E-17 4.1E-22 131.6 11.0 121 49-171 194-352 (362)
191 3vqt_A RF-3, peptide chain rel 99.7 6.1E-16 2.1E-20 128.1 16.8 115 8-128 30-166 (548)
192 2wsm_A Hydrogenase expression/ 99.7 5.9E-17 2E-21 119.5 9.0 155 8-173 29-215 (221)
193 1jal_A YCHF protein; nucleotid 99.7 1E-15 3.5E-20 120.1 15.9 145 10-154 3-239 (363)
194 2x2e_A Dynamin-1; nitration, h 99.7 1.7E-17 5.9E-22 130.8 3.5 159 7-168 29-254 (353)
195 1n0u_A EF-2, elongation factor 99.6 5E-16 1.7E-20 134.4 10.2 117 7-127 17-163 (842)
196 2qpt_A EH domain-containing pr 99.6 3E-16 1E-20 130.0 7.9 120 7-129 63-233 (550)
197 2hf9_A Probable hydrogenase ni 99.6 8.4E-18 2.9E-22 124.5 -1.7 153 8-171 37-223 (226)
198 3p32_A Probable GTPase RV1496/ 99.6 3.1E-16 1.1E-20 123.7 6.6 104 58-172 172-284 (355)
199 4a9a_A Ribosome-interacting GT 99.6 3.2E-14 1.1E-18 112.2 15.7 155 9-166 72-242 (376)
200 2www_A Methylmalonic aciduria 99.6 7.2E-16 2.5E-20 121.2 5.2 102 58-171 167-278 (349)
201 3j25_A Tetracycline resistance 99.6 8.2E-16 2.8E-20 129.6 5.1 159 10-175 3-242 (638)
202 2dby_A GTP-binding protein; GD 99.6 3.1E-14 1.1E-18 112.2 13.8 84 10-93 2-111 (368)
203 4fn5_A EF-G 1, elongation fact 99.6 8.8E-14 3E-18 118.7 17.1 115 8-127 12-150 (709)
204 2p67_A LAO/AO transport system 99.5 6.6E-15 2.2E-19 115.5 6.2 103 58-171 149-260 (341)
205 1yrb_A ATP(GTP)binding protein 99.5 9.6E-15 3.3E-19 110.4 6.3 109 58-171 109-256 (262)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 2.2E-14 7.4E-19 121.8 7.1 159 7-169 49-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 5.4E-13 1.9E-17 102.9 9.4 99 68-169 66-166 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 6E-14 2.1E-18 109.7 3.5 103 58-171 148-260 (337)
209 2ohf_A Protein OLA1, GTP-bindi 99.4 5.2E-13 1.8E-17 105.7 6.5 88 8-95 21-130 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.3E-11 7.8E-16 96.5 15.7 86 8-93 19-127 (392)
211 3l82_B F-box only protein 4; T 99.3 3E-12 1E-16 92.1 5.7 105 65-172 109-223 (227)
212 3l2o_B F-box only protein 4; s 99.1 9.4E-11 3.2E-15 88.3 7.4 105 65-172 194-308 (312)
213 3h2y_A GTPase family protein; 99.0 4.7E-10 1.6E-14 88.7 7.7 97 67-170 55-158 (368)
214 2qag_B Septin-6, protein NEDD5 99.0 8.5E-10 2.9E-14 88.2 9.1 140 10-154 43-218 (427)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 3.6E-11 1.2E-15 95.1 0.5 138 9-159 162-318 (369)
216 2j37_W Signal recognition part 99.0 6.9E-10 2.4E-14 90.7 5.6 151 8-169 100-310 (504)
217 1tq4_A IIGP1, interferon-induc 98.9 2.3E-08 7.8E-13 79.9 13.9 159 9-174 69-255 (413)
218 3sop_A Neuronal-specific septi 98.9 1E-09 3.4E-14 83.2 5.3 138 9-151 2-179 (270)
219 3h2y_A GTPase family protein; 98.9 9E-11 3.1E-15 92.8 -0.7 135 9-153 160-311 (368)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 1.1E-09 3.7E-14 86.7 4.9 97 67-170 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.9 1.3E-09 4.5E-14 83.0 4.2 100 62-171 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.6 6E-08 2E-12 73.9 5.2 58 8-70 119-177 (282)
223 3dm5_A SRP54, signal recogniti 98.5 4.4E-07 1.5E-11 72.9 9.3 86 58-153 183-274 (443)
224 3cnl_A YLQF, putative uncharac 98.5 4.6E-08 1.6E-12 73.7 3.2 58 10-71 100-157 (262)
225 2v3c_C SRP54, signal recogniti 98.4 1.7E-07 5.7E-12 75.5 5.0 83 58-151 181-271 (432)
226 3cnl_A YLQF, putative uncharac 98.4 6.3E-08 2.2E-12 73.0 2.1 94 65-169 4-98 (262)
227 1f5n_A Interferon-induced guan 98.3 4.7E-07 1.6E-11 75.4 4.9 64 7-70 36-103 (592)
228 3kl4_A SRP54, signal recogniti 98.3 3.6E-07 1.2E-11 73.4 2.9 89 58-158 180-276 (433)
229 1t9h_A YLOQ, probable GTPase E 98.2 8.7E-07 3E-11 68.1 2.9 91 72-165 77-170 (307)
230 1j8m_F SRP54, signal recogniti 98.1 7.9E-06 2.7E-10 62.6 6.5 90 58-160 181-279 (297)
231 3szr_A Interferon-induced GTP- 98.0 9.7E-06 3.3E-10 68.1 6.9 25 10-34 46-70 (608)
232 3e70_C DPA, signal recognition 97.9 4.2E-05 1.4E-09 59.4 7.8 90 59-160 213-308 (328)
233 2rcn_A Probable GTPase ENGC; Y 97.8 7.6E-05 2.6E-09 58.5 8.4 85 78-166 127-213 (358)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.8E-06 6.3E-11 70.4 -0.9 110 7-121 37-156 (469)
235 3q5d_A Atlastin-1; G protein, 97.7 3.8E-05 1.3E-09 61.9 5.6 24 8-31 66-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.4 8.7E-05 3E-09 52.4 3.0 23 10-32 1-23 (178)
237 3ney_A 55 kDa erythrocyte memb 97.3 0.00014 4.9E-09 52.1 3.4 28 5-32 15-42 (197)
238 1t9h_A YLOQ, probable GTPase E 97.3 9.1E-05 3.1E-09 56.9 2.3 25 9-33 173-197 (307)
239 1kgd_A CASK, peripheral plasma 97.3 0.00017 5.9E-09 50.8 3.3 24 9-32 5-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 52.1 2.9 22 10-31 5-26 (198)
241 2xxa_A Signal recognition part 97.2 0.00078 2.7E-08 54.2 6.9 63 58-127 184-253 (433)
242 3asz_A Uridine kinase; cytidin 97.2 0.00019 6.7E-09 51.7 3.2 25 7-31 4-28 (211)
243 1y63_A LMAJ004144AAA protein; 97.2 0.00028 9.7E-09 49.9 3.6 29 4-32 5-33 (184)
244 3a00_A Guanylate kinase, GMP k 97.1 0.00023 7.9E-09 50.4 2.8 21 12-32 4-24 (186)
245 3tr0_A Guanylate kinase, GMP k 97.1 0.00024 8.3E-09 50.9 2.9 23 10-32 8-30 (205)
246 1s96_A Guanylate kinase, GMP k 97.1 0.00025 8.6E-09 51.8 2.9 25 9-33 16-40 (219)
247 2yv5_A YJEQ protein; hydrolase 97.1 0.00095 3.2E-08 51.1 6.2 24 9-33 165-188 (302)
248 2j41_A Guanylate kinase; GMP, 97.1 0.0003 1E-08 50.5 3.2 26 8-33 5-30 (207)
249 4gp7_A Metallophosphoesterase; 97.1 0.00025 8.7E-09 49.6 2.7 21 10-30 10-30 (171)
250 1znw_A Guanylate kinase, GMP k 97.1 0.00026 8.9E-09 51.1 2.8 23 10-32 21-43 (207)
251 1z6g_A Guanylate kinase; struc 97.1 0.00027 9.4E-09 51.5 2.8 25 9-33 23-47 (218)
252 3c8u_A Fructokinase; YP_612366 97.1 0.00038 1.3E-08 50.2 3.4 25 7-31 20-44 (208)
253 1zp6_A Hypothetical protein AT 97.1 0.00042 1.4E-08 49.0 3.6 24 9-32 9-32 (191)
254 1ex7_A Guanylate kinase; subst 97.0 0.00034 1.2E-08 49.7 3.0 21 12-32 4-24 (186)
255 3iij_A Coilin-interacting nucl 97.0 0.00044 1.5E-08 48.6 3.4 24 7-30 9-32 (180)
256 1knq_A Gluconate kinase; ALFA/ 97.0 0.00055 1.9E-08 47.8 3.8 25 7-31 6-30 (175)
257 3tif_A Uncharacterized ABC tra 97.0 0.0004 1.4E-08 51.3 2.9 23 11-33 33-55 (235)
258 4eun_A Thermoresistant glucoki 97.0 0.00046 1.6E-08 49.5 3.2 24 8-31 28-51 (200)
259 3tau_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 50.0 3.0 25 9-33 8-32 (208)
260 1kht_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 48.7 3.1 22 10-31 4-25 (192)
261 1nn5_A Similar to deoxythymidy 96.9 0.00053 1.8E-08 49.4 3.1 24 8-31 8-31 (215)
262 2pcj_A ABC transporter, lipopr 96.9 0.00046 1.6E-08 50.5 2.8 23 11-33 32-54 (224)
263 2qor_A Guanylate kinase; phosp 96.9 0.00054 1.9E-08 49.2 3.0 23 10-32 13-35 (204)
264 2rcn_A Probable GTPase ENGC; Y 96.9 0.00056 1.9E-08 53.6 3.2 25 10-34 216-240 (358)
265 1htw_A HI0065; nucleotide-bind 96.9 0.00055 1.9E-08 47.3 2.8 24 10-33 34-57 (158)
266 1tev_A UMP-CMP kinase; ploop, 96.9 0.00065 2.2E-08 48.1 3.3 22 9-30 3-24 (196)
267 2plr_A DTMP kinase, probable t 96.9 0.00073 2.5E-08 48.5 3.6 25 7-31 2-26 (213)
268 1kag_A SKI, shikimate kinase I 96.9 0.00059 2E-08 47.5 2.9 22 10-31 5-26 (173)
269 1sgw_A Putative ABC transporte 96.9 0.00061 2.1E-08 49.5 3.0 23 11-33 37-59 (214)
270 2onk_A Molybdate/tungstate ABC 96.9 0.0006 2.1E-08 50.5 3.0 23 11-33 26-48 (240)
271 2cbz_A Multidrug resistance-as 96.9 0.00064 2.2E-08 50.2 3.1 22 11-32 33-54 (237)
272 1zd8_A GTP:AMP phosphotransfer 96.8 0.00062 2.1E-08 49.7 3.0 28 1-30 1-28 (227)
273 1b0u_A Histidine permease; ABC 96.8 0.0006 2.1E-08 51.1 3.0 23 11-33 34-56 (262)
274 3lw7_A Adenylate kinase relate 96.8 0.00067 2.3E-08 47.0 3.1 20 10-29 2-21 (179)
275 1qhx_A CPT, protein (chloramph 96.8 0.00079 2.7E-08 47.0 3.4 22 10-31 4-25 (178)
276 4ido_A Atlastin-1; GTPase, GTP 96.8 0.012 4.1E-07 47.4 10.5 96 8-103 66-193 (457)
277 3gfo_A Cobalt import ATP-bindi 96.8 0.00064 2.2E-08 51.4 3.0 23 11-33 36-58 (275)
278 2i3b_A HCR-ntpase, human cance 96.8 0.00066 2.2E-08 48.3 2.8 22 11-32 3-24 (189)
279 1qf9_A UMP/CMP kinase, protein 96.8 0.00096 3.3E-08 47.1 3.7 23 9-31 6-28 (194)
280 1mv5_A LMRA, multidrug resista 96.8 0.00074 2.5E-08 50.1 3.2 24 10-33 29-52 (243)
281 1g6h_A High-affinity branched- 96.8 0.00067 2.3E-08 50.7 2.9 23 11-33 35-57 (257)
282 2ff7_A Alpha-hemolysin translo 96.8 0.00074 2.5E-08 50.2 3.1 23 11-33 37-59 (247)
283 2bdt_A BH3686; alpha-beta prot 96.8 0.00067 2.3E-08 48.0 2.8 21 11-31 4-24 (189)
284 3cm0_A Adenylate kinase; ATP-b 96.8 0.00091 3.1E-08 47.1 3.4 23 8-30 3-25 (186)
285 2olj_A Amino acid ABC transpor 96.8 0.00072 2.5E-08 50.7 3.0 23 11-33 52-74 (263)
286 2pze_A Cystic fibrosis transme 96.8 0.00081 2.8E-08 49.4 3.2 23 11-33 36-58 (229)
287 3fb4_A Adenylate kinase; psych 96.8 0.00077 2.6E-08 48.7 3.0 21 10-30 1-21 (216)
288 1ji0_A ABC transporter; ATP bi 96.8 0.00073 2.5E-08 50.0 2.9 23 11-33 34-56 (240)
289 4g1u_C Hemin import ATP-bindin 96.8 0.001 3.6E-08 50.0 3.7 23 11-33 39-61 (266)
290 3kb2_A SPBC2 prophage-derived 96.8 0.00083 2.8E-08 46.5 3.0 21 11-31 3-23 (173)
291 1vpl_A ABC transporter, ATP-bi 96.8 0.00078 2.7E-08 50.4 3.0 23 11-33 43-65 (256)
292 3dl0_A Adenylate kinase; phosp 96.8 0.00081 2.8E-08 48.6 3.0 21 10-30 1-21 (216)
293 2bbw_A Adenylate kinase 4, AK4 96.8 0.00085 2.9E-08 49.7 3.2 22 9-30 27-48 (246)
294 2qi9_C Vitamin B12 import ATP- 96.8 0.00079 2.7E-08 50.1 3.0 23 11-33 28-50 (249)
295 1u0l_A Probable GTPase ENGC; p 96.7 0.00094 3.2E-08 51.1 3.4 25 10-34 170-194 (301)
296 1ly1_A Polynucleotide kinase; 96.7 0.001 3.4E-08 46.5 3.3 22 10-31 3-24 (181)
297 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00081 2.8E-08 50.1 3.0 22 11-32 31-52 (250)
298 2ghi_A Transport protein; mult 96.7 0.00087 3E-08 50.2 3.1 22 11-32 48-69 (260)
299 1np6_A Molybdopterin-guanine d 96.7 0.00085 2.9E-08 47.1 2.9 23 10-32 7-29 (174)
300 3b85_A Phosphate starvation-in 96.7 0.00072 2.5E-08 48.9 2.5 22 11-32 24-45 (208)
301 2v9p_A Replication protein E1; 96.7 0.00083 2.8E-08 51.5 3.0 24 9-32 126-149 (305)
302 2ihy_A ABC transporter, ATP-bi 96.7 0.00092 3.2E-08 50.6 3.2 23 11-33 49-71 (279)
303 2eyu_A Twitching motility prot 96.7 0.00079 2.7E-08 50.5 2.8 22 10-31 26-47 (261)
304 2zu0_C Probable ATP-dependent 96.7 0.00088 3E-08 50.4 3.0 22 11-32 48-69 (267)
305 2ixe_A Antigen peptide transpo 96.7 0.00092 3.2E-08 50.4 3.1 23 11-33 47-69 (271)
306 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4.2E-08 47.1 3.6 25 7-31 18-42 (201)
307 1cke_A CK, MSSA, protein (cyti 96.7 0.001 3.4E-08 48.4 3.2 22 10-31 6-27 (227)
308 2if2_A Dephospho-COA kinase; a 96.7 0.00095 3.3E-08 47.8 2.9 22 10-31 2-23 (204)
309 2nq2_C Hypothetical ABC transp 96.7 0.00096 3.3E-08 49.8 2.9 23 11-33 33-55 (253)
310 2yz2_A Putative ABC transporte 96.7 0.00096 3.3E-08 50.1 2.9 23 11-33 35-57 (266)
311 3aez_A Pantothenate kinase; tr 96.6 0.0014 4.8E-08 50.5 3.8 26 7-32 88-113 (312)
312 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.4E-08 46.5 3.4 23 9-31 5-27 (193)
313 3umf_A Adenylate kinase; rossm 96.6 0.0017 5.9E-08 47.2 4.0 24 7-30 26-50 (217)
314 2pjz_A Hypothetical protein ST 96.6 0.0012 4.1E-08 49.5 3.2 23 11-33 32-54 (263)
315 1ukz_A Uridylate kinase; trans 96.6 0.0018 6.3E-08 46.2 4.1 23 8-30 14-36 (203)
316 3lnc_A Guanylate kinase, GMP k 96.6 0.00066 2.3E-08 49.7 1.7 23 10-32 28-51 (231)
317 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 46.1 3.0 20 11-30 6-25 (175)
318 2qt1_A Nicotinamide riboside k 96.6 0.0017 5.8E-08 46.6 3.8 25 8-32 20-44 (207)
319 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.9E-08 47.4 2.9 22 10-31 19-40 (202)
320 3ec2_A DNA replication protein 96.6 0.00092 3.1E-08 46.9 2.3 24 9-32 38-61 (180)
321 2wwf_A Thymidilate kinase, put 96.6 0.0015 5.2E-08 46.9 3.6 24 8-31 9-32 (212)
322 3tlx_A Adenylate kinase 2; str 96.6 0.0015 5E-08 48.4 3.5 23 8-30 28-50 (243)
323 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.8E-08 47.0 3.3 22 10-31 3-24 (206)
324 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.5E-08 47.0 3.1 21 10-30 26-46 (199)
325 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.4E-08 46.9 3.1 21 11-31 2-22 (205)
326 2jeo_A Uridine-cytidine kinase 96.6 0.0015 5E-08 48.4 3.5 24 8-31 24-47 (245)
327 2f1r_A Molybdopterin-guanine d 96.6 0.00058 2E-08 47.8 1.2 22 11-32 4-25 (171)
328 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.5E-08 46.5 3.5 24 8-31 24-47 (200)
329 2vli_A Antibiotic resistance p 96.6 0.00091 3.1E-08 46.9 2.1 23 8-30 4-26 (183)
330 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.3E-08 46.6 3.4 24 9-32 4-27 (204)
331 1nks_A Adenylate kinase; therm 96.6 0.0014 4.9E-08 46.2 3.1 21 11-31 3-23 (194)
332 3sr0_A Adenylate kinase; phosp 96.6 0.0014 4.9E-08 47.3 3.1 21 10-30 1-21 (206)
333 2ehv_A Hypothetical protein PH 96.6 0.0013 4.5E-08 48.4 3.0 20 11-30 32-51 (251)
334 1gvn_B Zeta; postsegregational 96.5 0.0018 6.3E-08 49.2 3.8 25 7-31 31-55 (287)
335 4a74_A DNA repair and recombin 96.5 0.0012 4E-08 48.0 2.6 22 11-32 27-48 (231)
336 1odf_A YGR205W, hypothetical 3 96.5 0.0021 7.1E-08 49.0 4.0 25 6-30 28-52 (290)
337 3nh6_A ATP-binding cassette SU 96.5 0.00095 3.3E-08 51.2 2.1 23 10-32 81-103 (306)
338 2yvu_A Probable adenylyl-sulfa 96.5 0.0022 7.7E-08 45.1 4.0 25 7-31 11-35 (186)
339 3d3q_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 50.4 3.5 28 1-30 1-28 (340)
340 1e4v_A Adenylate kinase; trans 96.5 0.0014 4.9E-08 47.3 2.9 22 10-31 1-22 (214)
341 3co5_A Putative two-component 96.5 0.0089 3E-07 40.2 6.7 23 10-32 28-50 (143)
342 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.3E-08 46.1 3.4 26 7-32 6-31 (203)
343 2f6r_A COA synthase, bifunctio 96.5 0.0024 8.1E-08 48.4 4.1 24 7-30 73-96 (281)
344 1aky_A Adenylate kinase; ATP:A 96.5 0.0017 5.9E-08 47.1 3.2 22 9-30 4-25 (220)
345 2bbs_A Cystic fibrosis transme 96.5 0.0015 5.1E-08 49.7 3.0 23 11-33 66-88 (290)
346 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0017 5.8E-08 50.9 3.2 24 11-34 32-55 (359)
347 3trf_A Shikimate kinase, SK; a 96.5 0.0018 6.1E-08 45.5 3.1 21 10-30 6-26 (185)
348 1z47_A CYSA, putative ABC-tran 96.5 0.0016 5.4E-08 51.0 3.0 24 11-34 43-66 (355)
349 2c95_A Adenylate kinase 1; tra 96.5 0.0019 6.3E-08 45.8 3.2 22 9-30 9-30 (196)
350 2pt5_A Shikimate kinase, SK; a 96.4 0.0019 6.6E-08 44.5 3.1 21 11-31 2-22 (168)
351 2yyz_A Sugar ABC transporter, 96.4 0.0017 5.8E-08 50.9 3.0 23 11-33 31-53 (359)
352 3rlf_A Maltose/maltodextrin im 96.4 0.0017 5.9E-08 51.2 3.0 24 11-34 31-54 (381)
353 2it1_A 362AA long hypothetical 96.4 0.0017 6E-08 50.9 3.0 23 11-33 31-53 (362)
354 3tqc_A Pantothenate kinase; bi 96.4 0.0025 8.5E-08 49.2 3.8 24 7-30 90-113 (321)
355 1lw7_A Transcriptional regulat 96.4 0.0021 7E-08 50.6 3.4 24 9-32 170-193 (365)
356 1uj2_A Uridine-cytidine kinase 96.4 0.0022 7.6E-08 47.6 3.4 25 7-31 20-44 (252)
357 3tui_C Methionine import ATP-b 96.4 0.0018 6.3E-08 50.8 3.0 23 11-33 56-78 (366)
358 4e22_A Cytidylate kinase; P-lo 96.4 0.0022 7.6E-08 47.7 3.3 22 9-30 27-48 (252)
359 1rz3_A Hypothetical protein rb 96.4 0.0027 9.2E-08 45.4 3.6 24 8-31 21-44 (201)
360 3jvv_A Twitching mobility prot 96.4 0.0017 6E-08 50.8 2.8 21 11-31 125-145 (356)
361 1v43_A Sugar-binding transport 96.4 0.0019 6.6E-08 50.9 3.0 23 11-33 39-61 (372)
362 1vht_A Dephospho-COA kinase; s 96.4 0.0026 9E-08 46.0 3.6 23 9-31 4-26 (218)
363 1sq5_A Pantothenate kinase; P- 96.4 0.0023 8E-08 49.1 3.5 25 7-31 78-102 (308)
364 1g29_1 MALK, maltose transport 96.4 0.0019 6.5E-08 50.9 3.0 24 11-34 31-54 (372)
365 1zcb_A G alpha I/13; GTP-bindi 96.4 0.0023 7.8E-08 50.3 3.4 24 7-30 31-54 (362)
366 1xjc_A MOBB protein homolog; s 96.3 0.0023 7.8E-08 44.6 3.0 22 10-31 5-26 (169)
367 2kjq_A DNAA-related protein; s 96.3 0.0015 5.1E-08 44.6 2.0 23 10-32 37-59 (149)
368 2xb4_A Adenylate kinase; ATP-b 96.3 0.0022 7.7E-08 46.7 3.1 20 11-30 2-21 (223)
369 1rj9_A FTSY, signal recognitio 96.3 0.0019 6.6E-08 49.5 2.8 22 9-30 102-123 (304)
370 1zak_A Adenylate kinase; ATP:A 96.3 0.0021 7.1E-08 46.7 2.9 21 10-30 6-26 (222)
371 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0021 7E-08 49.9 2.9 24 10-33 172-195 (330)
372 2x8a_A Nuclear valosin-contain 96.3 0.0021 7E-08 48.5 2.8 21 12-32 47-67 (274)
373 2gza_A Type IV secretion syste 96.3 0.003 1E-07 49.6 3.8 25 9-33 175-199 (361)
374 2vp4_A Deoxynucleoside kinase; 96.3 0.003 1E-07 46.2 3.6 26 7-32 18-43 (230)
375 3d31_A Sulfate/molybdate ABC t 96.3 0.0016 5.4E-08 50.9 2.1 23 11-33 28-50 (348)
376 3b9q_A Chloroplast SRP recepto 96.3 0.0023 7.9E-08 49.0 2.9 23 8-30 99-121 (302)
377 2pez_A Bifunctional 3'-phospho 96.3 0.0032 1.1E-07 44.0 3.5 24 8-31 4-27 (179)
378 3r20_A Cytidylate kinase; stru 96.2 0.0028 9.5E-08 46.6 3.1 23 8-30 8-30 (233)
379 2pbr_A DTMP kinase, thymidylat 96.2 0.0027 9.3E-08 44.8 3.0 21 11-31 2-22 (195)
380 2z0h_A DTMP kinase, thymidylat 96.2 0.0027 9.4E-08 44.9 3.0 21 11-31 2-22 (197)
381 3crm_A TRNA delta(2)-isopenten 96.2 0.0034 1.2E-07 48.4 3.7 22 10-31 6-27 (323)
382 3be4_A Adenylate kinase; malar 96.2 0.0027 9.1E-08 46.0 3.0 22 9-30 5-26 (217)
383 1ixz_A ATP-dependent metallopr 96.2 0.0025 8.5E-08 47.3 2.9 21 12-32 52-72 (254)
384 2ewv_A Twitching motility prot 96.2 0.0025 8.5E-08 50.3 3.0 22 10-31 137-158 (372)
385 2p5t_B PEZT; postsegregational 96.2 0.0025 8.4E-08 47.4 2.8 25 7-31 30-54 (253)
386 2bwj_A Adenylate kinase 5; pho 96.2 0.0025 8.6E-08 45.2 2.7 23 9-31 12-34 (199)
387 1jbk_A CLPB protein; beta barr 96.2 0.003 1E-07 44.2 3.0 22 10-31 44-65 (195)
388 3gd7_A Fusion complex of cysti 96.2 0.0025 8.5E-08 50.6 2.8 22 11-32 49-70 (390)
389 3kta_A Chromosome segregation 96.2 0.0028 9.7E-08 44.4 2.8 21 11-31 28-48 (182)
390 1gtv_A TMK, thymidylate kinase 96.2 0.0011 3.9E-08 47.7 0.7 21 11-31 2-22 (214)
391 2ze6_A Isopentenyl transferase 96.1 0.0032 1.1E-07 46.9 2.9 20 11-30 3-22 (253)
392 1oxx_K GLCV, glucose, ABC tran 96.1 0.0016 5.4E-08 51.0 1.3 24 11-34 33-56 (353)
393 1e6c_A Shikimate kinase; phosp 96.1 0.0034 1.2E-07 43.4 2.9 21 11-31 4-24 (173)
394 2iyv_A Shikimate kinase, SK; t 96.1 0.0032 1.1E-07 44.2 2.8 21 11-31 4-24 (184)
395 3foz_A TRNA delta(2)-isopenten 96.1 0.0043 1.5E-07 47.5 3.6 31 1-31 1-32 (316)
396 1p9r_A General secretion pathw 96.1 0.0029 1E-07 50.6 2.8 22 11-32 169-190 (418)
397 1nij_A Hypothetical protein YJ 96.1 0.0024 8.2E-08 49.2 2.2 23 11-33 6-28 (318)
398 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0042 1.4E-07 46.4 3.5 22 10-31 5-26 (260)
399 1ak2_A Adenylate kinase isoenz 96.1 0.0039 1.3E-07 45.7 3.2 22 9-30 16-37 (233)
400 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0028 9.7E-08 51.4 2.6 24 9-32 138-161 (460)
401 3ld9_A DTMP kinase, thymidylat 96.0 0.0048 1.7E-07 45.0 3.5 29 2-30 14-42 (223)
402 1iy2_A ATP-dependent metallopr 96.0 0.0037 1.3E-07 47.1 2.9 21 12-32 76-96 (278)
403 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0037 1.3E-07 45.4 2.8 22 11-32 25-46 (235)
404 2og2_A Putative signal recogni 96.0 0.0037 1.3E-07 49.0 2.9 23 8-30 156-178 (359)
405 2oap_1 GSPE-2, type II secreti 96.0 0.0049 1.7E-07 50.7 3.7 24 10-33 261-284 (511)
406 1in4_A RUVB, holliday junction 96.0 0.0037 1.3E-07 48.5 2.8 22 11-32 53-74 (334)
407 4dzz_A Plasmid partitioning pr 96.0 0.012 4E-07 41.9 5.3 85 58-149 76-162 (206)
408 2yhs_A FTSY, cell division pro 95.9 0.004 1.4E-07 50.8 2.9 23 8-30 292-314 (503)
409 1zuh_A Shikimate kinase; alpha 95.9 0.0052 1.8E-07 42.4 3.1 20 11-30 9-28 (168)
410 2obl_A ESCN; ATPase, hydrolase 95.9 0.0043 1.5E-07 48.4 2.9 25 9-33 71-95 (347)
411 4eaq_A DTMP kinase, thymidylat 95.9 0.0072 2.5E-07 44.2 3.9 24 8-31 25-48 (229)
412 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0054 1.8E-07 41.8 3.0 19 12-30 26-44 (149)
413 2grj_A Dephospho-COA kinase; T 95.8 0.0059 2E-07 43.5 3.3 25 8-32 11-35 (192)
414 1m7g_A Adenylylsulfate kinase; 95.8 0.0067 2.3E-07 43.6 3.5 24 8-31 24-47 (211)
415 2p65_A Hypothetical protein PF 95.8 0.004 1.4E-07 43.3 2.3 23 9-31 43-65 (187)
416 3v9p_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 45.2 2.7 24 7-30 23-46 (227)
417 1cr0_A DNA primase/helicase; R 95.8 0.0045 1.5E-07 47.0 2.6 22 11-32 37-58 (296)
418 3nwj_A ATSK2; P loop, shikimat 95.8 0.0051 1.7E-07 45.7 2.8 23 9-31 48-70 (250)
419 3bos_A Putative DNA replicatio 95.8 0.0054 1.8E-07 44.6 2.9 23 9-31 52-74 (242)
420 1lv7_A FTSH; alpha/beta domain 95.8 0.0053 1.8E-07 45.5 2.9 22 10-31 46-67 (257)
421 2h92_A Cytidylate kinase; ross 95.7 0.0057 1.9E-07 44.2 2.9 22 10-31 4-25 (219)
422 3ake_A Cytidylate kinase; CMP 95.7 0.0069 2.4E-07 43.2 3.3 21 11-31 4-24 (208)
423 2cvh_A DNA repair and recombin 95.7 0.0056 1.9E-07 44.1 2.8 22 10-31 21-42 (220)
424 2dpy_A FLII, flagellum-specifi 95.7 0.0056 1.9E-07 49.4 2.9 25 9-33 157-181 (438)
425 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0081 2.8E-07 49.7 3.9 24 10-33 48-71 (538)
426 1n0w_A DNA repair protein RAD5 95.7 0.006 2.1E-07 44.6 2.9 23 10-32 25-47 (243)
427 2w58_A DNAI, primosome compone 95.7 0.0061 2.1E-07 43.4 2.8 22 10-31 55-76 (202)
428 3zvl_A Bifunctional polynucleo 95.7 0.01 3.4E-07 47.5 4.2 24 8-31 257-280 (416)
429 1q3t_A Cytidylate kinase; nucl 95.7 0.0077 2.6E-07 44.2 3.3 25 7-31 14-38 (236)
430 3b60_A Lipid A export ATP-bind 95.6 0.006 2.1E-07 51.0 3.0 24 10-33 370-393 (582)
431 3euj_A Chromosome partition pr 95.6 0.006 2.1E-07 49.7 2.9 20 11-30 31-50 (483)
432 1ltq_A Polynucleotide kinase; 95.6 0.008 2.7E-07 45.6 3.3 22 10-31 3-24 (301)
433 3n70_A Transport activator; si 95.6 0.0078 2.7E-07 40.6 2.9 24 9-32 24-47 (145)
434 4edh_A DTMP kinase, thymidylat 95.6 0.0094 3.2E-07 43.1 3.4 25 6-30 3-27 (213)
435 3b5x_A Lipid A export ATP-bind 95.5 0.0091 3.1E-07 49.9 3.7 24 10-33 370-393 (582)
436 3cwq_A Para family chromosome 95.5 0.083 2.8E-06 37.8 8.4 85 58-149 68-153 (209)
437 3ozx_A RNAse L inhibitor; ATP 95.5 0.0095 3.3E-07 49.3 3.7 24 10-33 26-49 (538)
438 3j16_B RLI1P; ribosome recycli 95.5 0.0095 3.3E-07 50.0 3.7 24 10-33 104-127 (608)
439 1svm_A Large T antigen; AAA+ f 95.5 0.0072 2.5E-07 47.7 2.8 23 9-31 169-191 (377)
440 3ch4_B Pmkase, phosphomevalona 95.5 0.014 4.6E-07 41.9 3.9 31 1-31 3-33 (202)
441 2yl4_A ATP-binding cassette SU 95.5 0.0062 2.1E-07 51.0 2.5 24 10-33 371-394 (595)
442 1njg_A DNA polymerase III subu 95.5 0.0084 2.9E-07 43.4 2.9 21 11-31 47-67 (250)
443 3exa_A TRNA delta(2)-isopenten 95.5 0.01 3.6E-07 45.5 3.4 24 9-32 3-26 (322)
444 2chg_A Replication factor C sm 95.4 0.0087 3E-07 42.7 2.9 21 11-31 40-60 (226)
445 4a82_A Cystic fibrosis transme 95.4 0.0063 2.2E-07 50.8 2.4 23 10-32 368-390 (578)
446 3qf4_B Uncharacterized ABC tra 95.4 0.0071 2.4E-07 50.8 2.7 24 10-33 382-405 (598)
447 3bk7_A ABC transporter ATP-bin 95.4 0.012 4E-07 49.5 3.9 24 10-33 118-141 (607)
448 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0089 3E-07 47.0 3.0 19 12-30 26-44 (365)
449 3h4m_A Proteasome-activating n 95.4 0.0088 3E-07 45.0 2.8 23 10-32 52-74 (285)
450 3b9p_A CG5977-PA, isoform A; A 95.4 0.0088 3E-07 45.3 2.8 23 9-31 54-76 (297)
451 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.0094 3.2E-07 44.1 2.9 22 10-31 40-61 (262)
452 1nlf_A Regulatory protein REPA 95.3 0.0088 3E-07 45.0 2.6 21 11-31 32-52 (279)
453 3qf4_A ABC transporter, ATP-bi 95.3 0.0083 2.8E-07 50.2 2.7 23 10-32 370-392 (587)
454 3ozx_A RNAse L inhibitor; ATP 95.3 0.013 4.3E-07 48.6 3.7 24 11-34 296-319 (538)
455 1yqt_A RNAse L inhibitor; ATP- 95.3 0.014 4.8E-07 48.3 3.9 24 11-34 314-337 (538)
456 3bk7_A ABC transporter ATP-bin 95.2 0.014 4.9E-07 49.0 3.9 24 11-34 384-407 (607)
457 2qmh_A HPR kinase/phosphorylas 95.2 0.015 5.1E-07 41.6 3.4 26 8-33 33-58 (205)
458 3ea0_A ATPase, para family; al 95.2 0.17 5.7E-06 36.9 9.3 87 58-152 119-205 (245)
459 3t15_A Ribulose bisphosphate c 95.2 0.011 3.6E-07 45.0 2.7 22 10-31 37-58 (293)
460 3lv8_A DTMP kinase, thymidylat 95.2 0.013 4.3E-07 43.2 3.1 26 5-30 23-48 (236)
461 3cf0_A Transitional endoplasmi 95.2 0.011 3.7E-07 45.1 2.8 23 10-32 50-72 (301)
462 1p5z_B DCK, deoxycytidine kina 95.2 0.012 4E-07 43.9 2.9 24 8-31 23-46 (263)
463 1l8q_A Chromosomal replication 95.2 0.011 3.7E-07 45.5 2.8 22 10-31 38-59 (324)
464 3a8t_A Adenylate isopentenyltr 95.1 0.016 5.6E-07 44.8 3.7 22 10-31 41-62 (339)
465 2px0_A Flagellar biosynthesis 95.1 0.011 3.7E-07 45.1 2.6 85 58-152 183-273 (296)
466 3gmt_A Adenylate kinase; ssgci 95.1 0.014 4.9E-07 42.7 3.2 23 8-30 7-29 (230)
467 1sxj_E Activator 1 40 kDa subu 95.1 0.011 3.6E-07 46.0 2.6 20 12-31 39-58 (354)
468 1tue_A Replication protein E1; 95.1 0.012 3.9E-07 42.4 2.5 22 10-31 59-80 (212)
469 1a7j_A Phosphoribulokinase; tr 95.1 0.0076 2.6E-07 45.8 1.7 24 8-31 4-27 (290)
470 1vma_A Cell division protein F 95.0 0.013 4.5E-07 44.9 2.9 86 58-153 187-284 (306)
471 2ocp_A DGK, deoxyguanosine kin 95.0 0.016 5.5E-07 42.5 3.3 22 10-31 3-24 (241)
472 3qks_A DNA double-strand break 95.0 0.015 5.1E-07 41.7 3.0 20 11-30 25-44 (203)
473 3j16_B RLI1P; ribosome recycli 95.0 0.017 5.8E-07 48.5 3.7 23 12-34 381-403 (608)
474 3syl_A Protein CBBX; photosynt 95.0 0.017 5.7E-07 43.9 3.4 22 9-30 67-88 (309)
475 2qby_A CDC6 homolog 1, cell di 95.0 0.012 4.2E-07 45.9 2.7 22 10-31 46-67 (386)
476 1ofh_A ATP-dependent HSL prote 95.0 0.014 4.8E-07 44.3 2.9 22 10-31 51-72 (310)
477 1c9k_A COBU, adenosylcobinamid 95.0 0.016 5.5E-07 40.7 3.0 21 12-32 2-22 (180)
478 1pzn_A RAD51, DNA repair and r 94.9 0.013 4.4E-07 45.8 2.6 23 10-32 132-154 (349)
479 2dr3_A UPF0273 protein PH0284; 94.9 0.015 5.1E-07 42.5 2.8 21 11-31 25-45 (247)
480 1fnn_A CDC6P, cell division co 94.9 0.015 5E-07 45.6 2.9 22 11-32 46-67 (389)
481 1d2n_A N-ethylmaleimide-sensit 94.8 0.023 7.7E-07 42.5 3.7 25 8-32 63-87 (272)
482 4fcw_A Chaperone protein CLPB; 94.8 0.016 5.4E-07 44.1 2.9 23 10-32 48-70 (311)
483 2ga8_A Hypothetical 39.9 kDa p 94.8 0.025 8.5E-07 44.2 3.9 23 8-30 23-45 (359)
484 1sxj_C Activator 1 40 kDa subu 94.8 0.016 5.3E-07 45.0 2.8 22 11-32 48-69 (340)
485 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.016 5.5E-07 44.7 2.8 23 10-32 46-68 (322)
486 2iw3_A Elongation factor 3A; a 94.8 0.018 6.3E-07 50.8 3.4 24 11-34 463-486 (986)
487 3uc9_A Increased recombination 94.7 0.13 4.4E-06 37.5 7.3 25 9-33 29-53 (233)
488 3tqf_A HPR(Ser) kinase; transf 94.7 0.022 7.6E-07 39.7 3.0 25 9-33 16-40 (181)
489 3eie_A Vacuolar protein sortin 94.6 0.02 6.9E-07 44.0 3.0 22 10-31 52-73 (322)
490 3u61_B DNA polymerase accessor 94.6 0.25 8.7E-06 37.7 9.2 21 11-31 49-70 (324)
491 2iw3_A Elongation factor 3A; a 94.6 0.012 4.1E-07 51.9 1.8 23 11-33 701-723 (986)
492 4tmk_A Protein (thymidylate ki 94.6 0.024 8.2E-07 41.0 3.1 23 8-30 2-24 (213)
493 4b4t_K 26S protease regulatory 94.6 0.019 6.7E-07 46.0 2.8 22 10-31 207-228 (428)
494 3cr8_A Sulfate adenylyltranfer 94.5 0.015 5E-07 48.3 2.2 25 8-32 368-392 (552)
495 1sxj_D Activator 1 41 kDa subu 94.5 0.021 7.1E-07 44.2 2.8 22 11-32 60-81 (353)
496 2r62_A Cell division protease 94.5 0.0094 3.2E-07 44.4 0.8 21 11-31 46-66 (268)
497 3uk6_A RUVB-like 2; hexameric 94.5 0.02 6.8E-07 44.7 2.7 22 10-31 71-92 (368)
498 2qgz_A Helicase loader, putati 94.5 0.024 8.1E-07 43.4 3.1 23 9-31 152-174 (308)
499 2v1u_A Cell division control p 94.5 0.019 6.4E-07 44.9 2.6 23 9-31 44-66 (387)
500 4b4t_M 26S protease regulatory 94.4 0.022 7.4E-07 45.8 2.9 23 9-31 215-237 (434)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.3e-46 Score=273.91 Aligned_cols=199 Identities=74% Similarity=1.180 Sum_probs=147.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+++++||+|+|.+|||||||+++|+.+.|...+.+|++.++....+..++..+.+.||||+|++.|..++..|++++|++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
++|||++++++|+.+..|+..+......++|++||+||.|+.+.+++...++++++.++++.|+++||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999999888888999999999999888899999999999999999999999999999999999
Q ss_pred HHHHcCCCccCCcccccccccccccCCCCCCCCCCCCCCCCcC
Q 028466 166 IAAALPGMETLSSTKQEDLVDVNLKSSNTNTSQSQPQSGGCAC 208 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
|.+.+................+.+... .+.+.++++|||
T Consensus 170 i~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~C~C 208 (216)
T 4dkx_A 170 VAAALPGMESTQDRSREDMIDIKLEKP----QEQPVSEGGCSC 208 (216)
T ss_dssp HHHHC--------------------------------------
T ss_pred HHHHHHhhhcccccccccccccccCCC----CCCCCCCCCCce
Confidence 999998766655554444343333322 233667788888
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5.7e-38 Score=230.46 Aligned_cols=173 Identities=40% Similarity=0.633 Sum_probs=155.9
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|++ +..+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 554 3456799999999999999999999999998888888888888888888988889999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.++....++..++...+++++++||+++.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999999887766789999999999998777788888899999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028466 161 ALFRKIAAALPGME 174 (208)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (208)
++|++|.+.+.+..
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=7.1e-37 Score=224.57 Aligned_cols=172 Identities=38% Similarity=0.649 Sum_probs=148.4
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+. ...+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence 444 3456799999999999999999999999988888888888888888888888889999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCC
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKA 155 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~ 155 (208)
.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .......++..++. ..++.++++||++
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999999988876653 468999999999996 45566778888887 5678999999999
Q ss_pred CCCHHHHHHHHHHHcCCCc
Q 028466 156 GFNIKALFRKIAAALPGME 174 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~~~~ 174 (208)
+.|++++|++|.+.+.+.+
T Consensus 159 g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TBSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999986543
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=221.07 Aligned_cols=172 Identities=34% Similarity=0.633 Sum_probs=146.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+++...++..++...++.++++||+++.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766679999999999998777788888999999999999999999999999999999
Q ss_pred HHHcCCCccCCc
Q 028466 167 AAALPGMETLSS 178 (208)
Q Consensus 167 ~~~~~~~~~~~~ 178 (208)
.+.+.+......
T Consensus 171 ~~~i~~~~~~~~ 182 (223)
T 3cpj_B 171 INTIYQKVSKHQ 182 (223)
T ss_dssp HHHHTTCC----
T ss_pred HHHHHHHhhhcc
Confidence 999877655544
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=217.00 Aligned_cols=167 Identities=34% Similarity=0.574 Sum_probs=148.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 46789999999999999999999999988777777766444 45567788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+..+....++..++..+++.++++||+++.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887653 5789999999999987777888899999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028466 165 KIAAALPGM 173 (208)
Q Consensus 165 ~l~~~~~~~ 173 (208)
+|.+.+.+.
T Consensus 170 ~l~~~i~~~ 178 (206)
T 2bov_A 170 DLMREIRAR 178 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988653
No 6
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.5e-34 Score=207.75 Aligned_cols=171 Identities=42% Similarity=0.740 Sum_probs=153.3
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567899999999999999999999999988877888888888888888888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..+....+++.++...++.++++||+++.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999998777778889999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028466 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
++|.+.+.+.+
T Consensus 167 ~~l~~~~~~~~ 177 (181)
T 2efe_B 167 YEIARRLPRVQ 177 (181)
T ss_dssp HHHHHTCC---
T ss_pred HHHHHHHHhcC
Confidence 99999986544
No 7
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.6e-34 Score=207.08 Aligned_cols=170 Identities=35% Similarity=0.649 Sum_probs=153.8
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (208)
+|.+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++++
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (179)
T 1z0f_A 8 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87 (179)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHT
T ss_pred CccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhcc
Confidence 34455678999999999999999999999999887778888888888888888888899999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
+|++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.++....++++++..+++.++++||+++.|+++
T Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998887767899999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028466 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|++|.+.+.
T Consensus 168 l~~~l~~~i~ 177 (179)
T 1z0f_A 168 AFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 8
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.2e-34 Score=204.59 Aligned_cols=167 Identities=41% Similarity=0.796 Sum_probs=152.9
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|+|++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|+++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999777777788889999999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 163 i~~~~~~ 169 (170)
T 1r2q_A 163 IAKKLPK 169 (170)
T ss_dssp HHHTSCC
T ss_pred HHHHHhh
Confidence 9988753
No 9
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-34 Score=203.64 Aligned_cols=166 Identities=44% Similarity=0.787 Sum_probs=151.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 35799999999999999999999999988878888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc---cCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK---RQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+. .++...+.+.++...++.++++||+++.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988777678999999999999765 5677788888999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 161 ~~l~~~i~~ 169 (170)
T 1ek0_A 161 LGIGEKIPL 169 (170)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHHhh
Confidence 999988753
No 10
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.8e-34 Score=205.76 Aligned_cols=167 Identities=83% Similarity=1.259 Sum_probs=153.3
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35779999999999999999999999998888888888888888888999888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.++....+...++...++.++++||+++.|+++++++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888889999999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 171 l~~~~~~ 177 (179)
T 2y8e_A 171 VAAALPG 177 (179)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9998854
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=3.7e-34 Score=207.80 Aligned_cols=169 Identities=38% Similarity=0.695 Sum_probs=150.2
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34467899999999999999999999999988777888888888888888888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...++.++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999987766789999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 176 ~~l~~~i~~ 184 (191)
T 2a5j_A 176 INTAKEIYR 184 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=207.03 Aligned_cols=167 Identities=39% Similarity=0.680 Sum_probs=155.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 35699999999999999999999999998888899998999899999998889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+.+.++..++++++++||+++.|++++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877789999999999998888888889999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 174 ~~~i~~~ 180 (196)
T 3tkl_A 174 AAEIKKR 180 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988543
No 13
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8.9e-34 Score=201.53 Aligned_cols=167 Identities=40% Similarity=0.728 Sum_probs=153.4
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||++++.++..+..|+..+........|+++|+||+|+.+.++....+...++...++.++++||+++.|+++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998876678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 163 i~~~i~~ 169 (170)
T 1z0j_A 163 ISRRIPS 169 (170)
T ss_dssp HHHHCCC
T ss_pred HHHHHhc
Confidence 9998753
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.6e-34 Score=207.43 Aligned_cols=167 Identities=37% Similarity=0.640 Sum_probs=153.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999777778888899999999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 167 l~~~~~~ 173 (186)
T 2bme_A 167 CARKILN 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988854
No 15
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-34 Score=207.74 Aligned_cols=170 Identities=41% Similarity=0.733 Sum_probs=152.4
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 33467899999999999999999999999988777888888888888888888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.++....++++++...++.++++||+++.|+++++
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999999999999887766679999999999997767778889999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028466 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
++|.+.+.+.
T Consensus 178 ~~l~~~i~~~ 187 (192)
T 2fg5_A 178 QGISRQIPPL 187 (192)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhh
Confidence 9999988643
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.1e-35 Score=211.20 Aligned_cols=166 Identities=41% Similarity=0.717 Sum_probs=123.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999998888778888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++..++++++++||+++.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766679999999999998777778889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 166 ~~~i~~ 171 (183)
T 2fu5_C 166 ARDIKA 171 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988854
No 17
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-34 Score=208.84 Aligned_cols=166 Identities=39% Similarity=0.670 Sum_probs=153.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999998888888888888888889998889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++...++.++++||+++.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999998777788888899999999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 184 ~~~i~~ 189 (201)
T 2ew1_A 184 ACRLIS 189 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988854
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.9e-34 Score=206.39 Aligned_cols=169 Identities=34% Similarity=0.469 Sum_probs=150.8
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 446789999999999999999999999888888888877666 6677788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
+++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+++.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999999988876643 578999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028466 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
++|.+.+.+..
T Consensus 161 ~~l~~~~~~~~ 171 (181)
T 3t5g_A 161 RRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999986554
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=210.73 Aligned_cols=166 Identities=42% Similarity=0.730 Sum_probs=144.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999988777888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++++++.+..|+..+......+.|++||+||+|+.+.+.+...++++++...++ .++++||+++.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999877667899999999999987777888899999999999 9999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 187 l~~~i~~ 193 (201)
T 2hup_A 187 VATELIM 193 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998853
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.1e-33 Score=204.99 Aligned_cols=167 Identities=38% Similarity=0.704 Sum_probs=152.3
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.....+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 33467999999999999999999999999887778888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..+++.++++||+++.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999987777778889999999999999999999999999999
Q ss_pred HHHHHcC
Q 028466 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 178 ~l~~~i~ 184 (189)
T 2gf9_A 178 RLVDVIC 184 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.1e-34 Score=204.02 Aligned_cols=165 Identities=39% Similarity=0.688 Sum_probs=144.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988778888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|+|++++++++.+..|+..+......+.|+++|+||+|+.+.++....+++.++...++.++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999988877665679999999999998777788889999999999999999999999999999999
Q ss_pred HHHcC
Q 028466 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 164 ~~~~~ 168 (170)
T 1z08_A 164 CKRMI 168 (170)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98774
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-34 Score=203.31 Aligned_cols=169 Identities=40% Similarity=0.678 Sum_probs=144.7
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
...+.+||+|+|.+|+|||||+++|+++.+. ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999998885 466788888888877788888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+..+....+.+.++..+++.++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766789999999999998777778888899999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028466 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
++|.+.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999988543
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.3e-34 Score=204.28 Aligned_cols=167 Identities=31% Similarity=0.479 Sum_probs=148.8
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4467899999999999999999999999888777777776554 667788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
+++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++...++.++++||+++.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999998885543 4678999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 164 ~~l~~~~~~ 172 (181)
T 2fn4_A 164 EQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998854
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=207.43 Aligned_cols=169 Identities=36% Similarity=0.670 Sum_probs=145.5
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
|....+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 44556789999999999999999999999988877788888888888888888888999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKA 161 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~ 161 (208)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+++.++..+ ++.++++||+++.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999998888776678999999999999877777888888888875 78999999999999999
Q ss_pred HHHHHHHHcC
Q 028466 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|++|.+.+.
T Consensus 180 l~~~l~~~i~ 189 (192)
T 2il1_A 180 IFLKLVDDIL 189 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 25
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.8e-34 Score=204.58 Aligned_cols=169 Identities=33% Similarity=0.518 Sum_probs=149.1
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999999988777778887778888888876 56899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 161 (208)
+|+|||++++++++.+..|+..+..... ..+|+++|+||+|+.+.+.....++..++..++++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888876432 2344899999999987777778889999999999999999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028466 162 LFRKIAAALPGME 174 (208)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (208)
+|++|.+.+.+.+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999986654
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=209.27 Aligned_cols=167 Identities=37% Similarity=0.658 Sum_probs=143.1
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999998877888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....++..++...++.++++||+++.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776678999999999999877778888899999999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 182 l~~~i~~ 188 (200)
T 2o52_A 182 CARTILN 188 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.2e-33 Score=203.51 Aligned_cols=167 Identities=31% Similarity=0.523 Sum_probs=150.4
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
...++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++++|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999999988888888877666 667778888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC-CCCCHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK-AGFNIKA 161 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~v~~ 161 (208)
++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.....+++.++..++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 9999999999999999999999887644 3678999999999998878888999999999999999999999 9999999
Q ss_pred HHHHHHHHcC
Q 028466 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|++|.+.+.
T Consensus 172 l~~~l~~~i~ 181 (183)
T 3kkq_A 172 TFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=204.19 Aligned_cols=166 Identities=32% Similarity=0.631 Sum_probs=151.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999998877788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.....+++.++...++.++++||+++.|++++|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888766668999999999999877777888899999999999999999999999999999
Q ss_pred HHHHcC
Q 028466 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 182 l~~~i~ 187 (193)
T 2oil_A 182 VLKEIF 187 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 29
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-34 Score=211.87 Aligned_cols=174 Identities=32% Similarity=0.510 Sum_probs=145.8
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 81 (208)
++|+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++++
T Consensus 2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 80 (212)
T 2j0v_A 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80 (212)
T ss_dssp CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence 356778899999999999999999999999988777777776444 4556678888899999999999999999999999
Q ss_pred CCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC--------cCHHHHHHHHHHcCC-eEEEe
Q 028466 82 SSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--------VSIEEGEAKARELNV-MFIET 151 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~ 151 (208)
+|++|+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+... +...++..++..+++ .++++
T Consensus 81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 99999999999999999986 7888887654 4799999999999965543 367788889999886 99999
Q ss_pred ecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466 152 SAKAGFNIKALFRKIAAALPGMETLS 177 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~~~~~~ 177 (208)
||+++.|++++|++|.+.+.+.....
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC----
T ss_pred cCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999987665443
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2e-33 Score=203.87 Aligned_cols=172 Identities=36% Similarity=0.594 Sum_probs=151.2
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee-EEEEEECCe---------EEEEEEEecCCchh
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~ 70 (208)
|+..+..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++. ...+..++. .+.+.+|||||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 55555677899999999999999999999999888777888887776 566666665 68999999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI 149 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
+...+..+++++|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.......+++.++..+++.++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999998887664 6799999999999987777778889999999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHcCC
Q 028466 150 ETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
++||+++.|++++|++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998853
No 31
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=203.69 Aligned_cols=166 Identities=37% Similarity=0.678 Sum_probs=150.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888999998889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.......+...++...+++++++||+++.|++++|++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999887654 579999999999998877888889999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 166 ~~~~~~~ 172 (181)
T 3tw8_B 166 TELVLRA 172 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988543
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.7e-33 Score=203.89 Aligned_cols=166 Identities=36% Similarity=0.621 Sum_probs=147.8
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-cchhhhhccCCE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 84 (208)
.++.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3567999999999999999999999999988888888888888888888888899999999999998 888999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC---CCHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG---FNIK 160 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~v~ 160 (208)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..+++.++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999988765 467999999999999877778888899999999999999999999 9999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.5e-33 Score=200.01 Aligned_cols=164 Identities=37% Similarity=0.644 Sum_probs=150.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+.++....+++.++...++.++++||+++.|+++++++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887765 578999999999998777777888999999999999999999999999999999
Q ss_pred HHHcC
Q 028466 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 162 ~~~~~ 166 (168)
T 1z2a_A 162 AEKHL 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=206.18 Aligned_cols=171 Identities=26% Similarity=0.359 Sum_probs=144.1
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-chhhhhcc
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRD 81 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~ 81 (208)
|....+.+||+|+|.+|||||||+++|.+......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 33445789999999999999999999986554434445566666777778888889999999999988765 67788999
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
+|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+++.|++
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence 9999999999999999999999998876553 479999999999998777788888999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028466 161 ALFRKIAAALPGM 173 (208)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (208)
++|++|.+.+.+.
T Consensus 177 ~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 177 ELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 35
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=204.56 Aligned_cols=166 Identities=30% Similarity=0.492 Sum_probs=143.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...++|+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4569999999999999999999999988777667666444 344567788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 164 (208)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+....+...++..+++.++++||+++.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877766543 4689999999999964 55667888888899999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028466 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+.+..
T Consensus 164 ~l~~~~~~~~ 173 (199)
T 2gf0_A 164 ELLTLETRRN 173 (199)
T ss_dssp HHHHHCSSSC
T ss_pred HHHHHHhhhh
Confidence 9999886543
No 36
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4e-33 Score=204.10 Aligned_cols=166 Identities=36% Similarity=0.666 Sum_probs=152.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45799999999999999999999999988777888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..+++.++++||+++.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887766689999999999998777788889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 166 ~~~i~~ 171 (203)
T 1zbd_A 166 VDVICE 171 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3e-33 Score=198.26 Aligned_cols=164 Identities=31% Similarity=0.555 Sum_probs=145.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999988777777776544 355667777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-CCeEEEeecCCCCCHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-NVMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~ 164 (208)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.....++..++..+ +.+++++||+++.|++++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 9999999999999999998887654 357999999999999877777888889999888 78999999999999999999
Q ss_pred HHHHHcC
Q 028466 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998774
No 38
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=205.91 Aligned_cols=167 Identities=40% Similarity=0.637 Sum_probs=139.1
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 35679999999999999999999999998877788888888888888899889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc------CccCcCHHHHHHHHHHcCCeEEEeecCCCCCH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV------DKRQVSIEEGEAKARELNVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 159 (208)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+...+++.++...++.++++||+++.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 999999999999999999998887766679999999999996 34566778888999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028466 160 KALFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
+++|++|.+.+.+
T Consensus 185 ~el~~~l~~~i~~ 197 (199)
T 2p5s_A 185 VEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
No 39
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.4e-33 Score=200.55 Aligned_cols=164 Identities=39% Similarity=0.744 Sum_probs=143.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887788888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|+|+++++++..+..|+..+......+.|+++|+||+|+ ........+...++..++++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998877678999999999999 4556677888899999999999999999999999999999
Q ss_pred HHcCC
Q 028466 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
+.+.+
T Consensus 161 ~~~~~ 165 (170)
T 1g16_A 161 KLIQE 165 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 40
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=209.37 Aligned_cols=171 Identities=32% Similarity=0.478 Sum_probs=144.1
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
|+..+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 4456789999999999999999999999999887777777655 555556666788999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+...+.+.++...++.++++||+++.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998876543 56899999999999888888889999999999999999999999999999
Q ss_pred HHHHHHHcCCCcc
Q 028466 163 FRKIAAALPGMET 175 (208)
Q Consensus 163 ~~~l~~~~~~~~~ 175 (208)
|++|.+.+.+...
T Consensus 178 ~~~l~~~i~~~~~ 190 (201)
T 3oes_A 178 FTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhh
Confidence 9999999865443
No 41
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=203.86 Aligned_cols=166 Identities=25% Similarity=0.410 Sum_probs=141.9
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
.+..+.+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+... ..+++++|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 4456789999999999999999999999998877778877555 455677888889999999999988875 67899999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeec-CCCCCH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTER---GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSA-KAGFNI 159 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~v 159 (208)
++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++...++.+++..+++.++++|| +++.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999999887664 257999999999999877788889999999999999999999 899999
Q ss_pred HHHHHHHHHHcC
Q 028466 160 KALFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|.+.+.
T Consensus 174 ~~lf~~l~~~i~ 185 (187)
T 3c5c_A 174 QHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 42
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-34 Score=207.90 Aligned_cols=165 Identities=36% Similarity=0.678 Sum_probs=152.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46799999999999999999999999988888888888888888888887789999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.....+.+.++..+++.++++||+++.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998878888899999999999999999999999999999999
Q ss_pred HHHcC
Q 028466 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 181 ~~~i~ 185 (191)
T 3dz8_A 181 VDAIC 185 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 43
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=201.46 Aligned_cols=170 Identities=39% Similarity=0.676 Sum_probs=152.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 56799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+....++..++...++.++++||+++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998876543 578999999999994 4566778889999999999999999999999999999
Q ss_pred HHHHcCCCccCC
Q 028466 166 IAAALPGMETLS 177 (208)
Q Consensus 166 l~~~~~~~~~~~ 177 (208)
|.+.+.+.+...
T Consensus 172 l~~~~~~~~~~~ 183 (195)
T 1x3s_A 172 LVEKIIQTPGLW 183 (195)
T ss_dssp HHHHHHTSGGGT
T ss_pred HHHHHHhhhhhh
Confidence 999987655433
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=6.2e-33 Score=196.57 Aligned_cols=164 Identities=34% Similarity=0.583 Sum_probs=143.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 5679999999999999999999999988777667666444 345667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+++.++...+++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999998887654 57999999999999877778888999999999999999999999999999999
Q ss_pred HHHHcC
Q 028466 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 45
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=6.9e-34 Score=210.26 Aligned_cols=167 Identities=37% Similarity=0.619 Sum_probs=148.7
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe----------EEEEEEEecCCchhhccch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~ 75 (208)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++. .+.+.||||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356799999999999999999999999888777788888877777777665 6789999999999999999
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (208)
..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+...+++.++..+++.++++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999999887765443 578999999999998777788889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q 028466 155 AGFNIKALFRKIAAALPG 172 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~ 172 (208)
++.|++++|++|.+.+.+
T Consensus 182 ~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.1e-32 Score=197.34 Aligned_cols=166 Identities=37% Similarity=0.625 Sum_probs=145.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.++|+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34679999999999999999999999998888888888888888888898888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-HcCCeEEEeecCCCCCHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~ 160 (208)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+....++..++. ..++.++++||+++.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988876654 578999999999996 55667788888888 556899999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 47
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.9e-33 Score=206.68 Aligned_cols=171 Identities=27% Similarity=0.485 Sum_probs=144.8
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
+...++.+||+|+|.+|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+...+..+++++
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34456789999999999999999999999999888888887665 45566777788999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eE
Q 028466 83 SVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MF 148 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 148 (208)
|++|+|||++++++++. +..|+..+.... .+.|+++|+||+|+.++ +.+...++..++..+++ .+
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 788998888764 57999999999999753 56888899999999999 99
Q ss_pred EEeecCCCCC-HHHHHHHHHHHcCCCcc
Q 028466 149 IETSAKAGFN-IKALFRKIAAALPGMET 175 (208)
Q Consensus 149 ~~~S~~~~~~-v~~~~~~l~~~~~~~~~ 175 (208)
+++||+++.| ++++|++|.+.+.....
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999999998 99999999998865433
No 48
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.1e-33 Score=200.04 Aligned_cols=162 Identities=19% Similarity=0.353 Sum_probs=141.1
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
+..++++||+|+|.+|||||||+++|+++.+...+.++.+ .....+.+++..+.+.+|||+|++.+. +++++|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4557899999999999999999999999998877766633 334777888988999999999998876 788999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHcC-CeEEEeecCCCCCH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLV--DKRQVSIEEGEAKARELN-VMFIETSAKAGFNI 159 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v 159 (208)
++++|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+...+++.++..++ +.++++||+++.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987653 578999999999994 456677889999999997 89999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028466 160 KALFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
+++|++|.+.+.+
T Consensus 168 ~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 168 ERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988743
No 49
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=202.67 Aligned_cols=169 Identities=33% Similarity=0.486 Sum_probs=144.7
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+.|...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 3445667789999999999999999999999988877777776544 45567788888999999999988 777888999
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC-C
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF-N 158 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~ 158 (208)
.+|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....++..++..+++.++++||+++. |
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 99999999999999999999999988877543 579999999999998777788889999999999999999999999 9
Q ss_pred HHHHHHHHHHHcC
Q 028466 159 IKALFRKIAAALP 171 (208)
Q Consensus 159 v~~~~~~l~~~~~ 171 (208)
++++|++|.+.+.
T Consensus 178 i~~l~~~l~~~i~ 190 (196)
T 2atv_A 178 ITEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-32 Score=199.85 Aligned_cols=165 Identities=38% Similarity=0.674 Sum_probs=146.1
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE--------------------------
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-------------------------- 57 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (208)
|+..+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 445678999999999999999999999999888888888878877777776654
Q ss_pred -----------EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 028466 58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 126 (208)
+.+.+|||||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+..... .|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence 7899999999999999999999999999999999999999999999998877653 99999999999
Q ss_pred cCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 127 VDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
....+....+++.++...++.++++||+++.|++++|++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 555677788999999999999999999999999999999998764
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=8.2e-33 Score=195.78 Aligned_cols=163 Identities=34% Similarity=0.548 Sum_probs=144.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+|+|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45799999999999999999999999887776666653 33566778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.++....+.+.++..++++++++||+++.|+++++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 99999999999999999988876543 57999999999999877778888889999999999999999999999999999
Q ss_pred HHHHc
Q 028466 166 IAAAL 170 (208)
Q Consensus 166 l~~~~ 170 (208)
|.+.+
T Consensus 160 l~~~~ 164 (167)
T 1kao_A 160 IVRQM 164 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=8.5e-33 Score=196.46 Aligned_cols=163 Identities=28% Similarity=0.407 Sum_probs=132.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-chhhhhccCCEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVI 87 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 87 (208)
.+||+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998777666666667777788888999899999999999998876 67777899999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+...++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999887654 479999999999998778888999999999999999999999999999999999
Q ss_pred HHHcC
Q 028466 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=200.48 Aligned_cols=169 Identities=29% Similarity=0.484 Sum_probs=145.7
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+.+...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 4455556789999999999999999999999988777777776444 455667777889999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-
Q 028466 81 DSSVAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV- 146 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~- 146 (208)
++|++|+|||+++++++..+. .|+..+.... .+.|+++|+||+|+.+. +.+...++..++..+++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 7888887654 47999999999999653 35677888999999987
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 147 MFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.++++||+++.|++++|++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=203.16 Aligned_cols=166 Identities=40% Similarity=0.727 Sum_probs=149.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999988788888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ........+...++..++++++++||+++.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999988776667999999999999 455667788888989999999999999999999999999
Q ss_pred HHHcCCC
Q 028466 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 177 ~~~~~~~ 183 (213)
T 3cph_A 177 AKLIQEK 183 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.2e-32 Score=198.80 Aligned_cols=166 Identities=32% Similarity=0.504 Sum_probs=145.8
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 356799999999999999999999999988777788776554 4567888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc--cCcCHHHHHHHHHHcCCe-EEEeecCCCCCHHH
Q 028466 86 VIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK--RQVSIEEGEAKARELNVM-FIETSAKAGFNIKA 161 (208)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~ 161 (208)
|+|||++++++++.+ ..|+..+... ..+.|+++|+||+|+.+. +.....++..++..+++. ++++||+++.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999996 6777777654 357999999999999753 567788999999999987 99999999999999
Q ss_pred HHHHHHHHcCCC
Q 028466 162 LFRKIAAALPGM 173 (208)
Q Consensus 162 ~~~~l~~~~~~~ 173 (208)
+|++|.+.+.+.
T Consensus 178 l~~~l~~~i~~~ 189 (194)
T 3reg_A 178 VFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc
Confidence 999999988544
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1e-32 Score=199.31 Aligned_cols=166 Identities=30% Similarity=0.518 Sum_probs=142.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999988777666664 444566678888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+. .......++..++..++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887543 578999999999996 4566778889999999999999999999999999999
Q ss_pred HHHHcCCCc
Q 028466 166 IAAALPGME 174 (208)
Q Consensus 166 l~~~~~~~~ 174 (208)
|.+.+.+..
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999985443
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.7e-32 Score=196.76 Aligned_cols=166 Identities=34% Similarity=0.582 Sum_probs=146.0
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 346789999999999999999999999988777767665444 4456678888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
+|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+++.++..++++++++|++++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999998887664 479999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028466 164 RKIAAALP 171 (208)
Q Consensus 164 ~~l~~~~~ 171 (208)
++|.+.+.
T Consensus 173 ~~l~~~i~ 180 (187)
T 2a9k_A 173 FDLMREIR 180 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.3e-33 Score=204.31 Aligned_cols=177 Identities=29% Similarity=0.473 Sum_probs=151.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-eEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
...+||+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+|||||++.+...+..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999999888777777777666666655543 347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+..+....++..++...++.++++||+++.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998877777999999999999877778888888898889999999999999999999999
Q ss_pred HHHHcCCCccCCcccccc
Q 028466 166 IAAALPGMETLSSTKQED 183 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~~~ 183 (208)
|.+.+.+...........
T Consensus 169 l~~~~~~~~~~~~~~~~~ 186 (218)
T 4djt_A 169 LARIFTGRPDLIFVSNVN 186 (218)
T ss_dssp HHHHHHCCTTCCBCSCCC
T ss_pred HHHHHhcccccccccccC
Confidence 999998776665554443
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=196.52 Aligned_cols=164 Identities=35% Similarity=0.476 Sum_probs=133.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh--hccchhhhhccCCE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 84 (208)
++.+||+|+|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999988875543 3455566677778888888999999999987 56667788899999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3578999999999998777788888888999999999999999999999999
Q ss_pred HHHHHHcC
Q 028466 164 RKIAAALP 171 (208)
Q Consensus 164 ~~l~~~~~ 171 (208)
++|.+.+.
T Consensus 161 ~~l~~~~~ 168 (175)
T 2nzj_A 161 EGVVRQLR 168 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3.6e-32 Score=194.95 Aligned_cols=162 Identities=21% Similarity=0.399 Sum_probs=136.8
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
|..++.+||+|+|.+|||||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++. ..+++++|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 455788999999999999999999999998876 56666633 356677888888999999999876 45788999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCc--CccCcCHHHHHHHHHHc-CCeEEEeecCCCC
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLV--DKRQVSIEEGEAKAREL-NVMFIETSAKAGF 157 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 157 (208)
++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+. ..+.+...+++.++... ++.++++||+++.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 99999999999999999997766654432 578999999999994 45567788888888876 6899999999999
Q ss_pred CHHHHHHHHHHHcCC
Q 028466 158 NIKALFRKIAAALPG 172 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~ 172 (208)
|++++|++|.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988753
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=4.1e-32 Score=195.71 Aligned_cols=167 Identities=32% Similarity=0.516 Sum_probs=144.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 46789999999999999999999999988777767665433 45567788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEe
Q 028466 86 VIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+...+...++..++. .++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 6888777654 37999999999999653 45667788889999887 99999
Q ss_pred ecCCCCCHHHHHHHHHHHcCCCc
Q 028466 152 SAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
||+++.|++++|++|.+.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999986543
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-32 Score=197.09 Aligned_cols=170 Identities=37% Similarity=0.618 Sum_probs=132.2
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccchhhhh
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 79 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (208)
|++ ...+.++|+|+|.+|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..++
T Consensus 1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence 544 34567999999999999999999999999888888888877877777776 5567899999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcC----CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHH-HcCCeEEEeec
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERG----SDVIIVLVGNKTDLVD-KRQVSIEEGEAKAR-ELNVMFIETSA 153 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~ 153 (208)
+.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .......++..++. ..++.++++||
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999998877653 6789999999999954 34566778888887 45689999999
Q ss_pred CCCCCHHHHHHHHHHHcC
Q 028466 154 KAGFNIKALFRKIAAALP 171 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~ 171 (208)
+++.|++++|++|.+.+.
T Consensus 160 ~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 63
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.2e-32 Score=191.59 Aligned_cols=164 Identities=30% Similarity=0.486 Sum_probs=142.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888766667666444 3445677777899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.++....+...++...+++++++||+++.|+++++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888888776543 46899999999999877777788888899999999999999999999999999
Q ss_pred HHHHcCC
Q 028466 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9998753
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=198.91 Aligned_cols=167 Identities=33% Similarity=0.498 Sum_probs=135.9
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 446789999999999999999999999888777777765443 4566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEE
Q 028466 85 AVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIE 150 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (208)
+|+|||+++++++..+. .|+..+.... .+.|+++|+||+|+.+. +.+...++..++..++. .+++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7888887654 47999999999999652 45677888899998887 9999
Q ss_pred eecCCCCCHHHHHHHHHHHcCCC
Q 028466 151 TSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 151 ~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+||+++.|++++|++|.+.+.+.
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999887543
No 65
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=211.58 Aligned_cols=166 Identities=39% Similarity=0.688 Sum_probs=142.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999988888888888888888889998889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+++.++..++++++++||+++.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999987766689999999999998777776677888899999999999999999999999999
Q ss_pred HHHcCC
Q 028466 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 191 ~~~l~~ 196 (199)
T 3l0i_B 191 AAEIKK 196 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHH
Confidence 988754
No 66
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.3e-32 Score=191.79 Aligned_cols=161 Identities=32% Similarity=0.462 Sum_probs=121.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEE
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|+|||||+++|.+..+... .++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665432 33333333 45567888889999999999999999999999999999999
Q ss_pred EeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 89 YDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.++....+.+.++...+++++++||+++.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36799999999999988888889999999999999999999999999999999999
Q ss_pred HHcC
Q 028466 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 160 ~~~~ 163 (166)
T 3q72_A 160 RQIR 163 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5e-33 Score=204.01 Aligned_cols=166 Identities=31% Similarity=0.491 Sum_probs=111.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEECCe--EEEEEEEecCCchhhccchhhhhccC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
.+.++|+|+|.+|+|||||+++|.++ .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999988 777777788877788888888876 78999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcC-ccCcCHHHHHHHHHHcCCeEEEeecCC-CC
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVD-KRQVSIEEGEAKARELNVMFIETSAKA-GF 157 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~ 157 (208)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+...+++.++..+++.++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999987765 5799999999999987 677888899999999999999999999 99
Q ss_pred CHHHHHHHHHHHcCC
Q 028466 158 NIKALFRKIAAALPG 172 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~ 172 (208)
|++++|++|.+.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988753
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.6e-32 Score=195.25 Aligned_cols=167 Identities=29% Similarity=0.518 Sum_probs=133.8
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
.+.++.++|+|+|.+|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 4557889999999999999999999999888766666655333 456677888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......++++++..++++++++|++++.|++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999988876653 5689999999999965 556778889999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028466 163 FRKIAAALPG 172 (208)
Q Consensus 163 ~~~l~~~~~~ 172 (208)
+++|.+.+.+
T Consensus 174 ~~~l~~~~~~ 183 (190)
T 3con_A 174 FYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 69
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-32 Score=199.79 Aligned_cols=166 Identities=31% Similarity=0.458 Sum_probs=137.7
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCC--CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhcc
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRD 81 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 81 (208)
...+.+||+|+|.+|||||||+++|++... ... .++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345679999999999999999999996443 333 34456666677788888888999999999887 55566777889
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
+|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+++...+.+.++..+++.++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988876542 3579999999999997767777888888888899999999999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.+.
T Consensus 192 elf~~l~~~i~ 202 (211)
T 2g3y_A 192 ELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998873
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3e-31 Score=187.40 Aligned_cols=163 Identities=29% Similarity=0.511 Sum_probs=141.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 356999999999999999999999988876666665533 3555667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.++++..++++++++|++++.|+++++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999988877653 4799999999999865 456678888999999999999999999999999999
Q ss_pred HHHHcC
Q 028466 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 159 l~~~~~ 164 (166)
T 2ce2_X 159 LVREIR 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998774
No 71
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=7.5e-32 Score=194.51 Aligned_cols=164 Identities=26% Similarity=0.491 Sum_probs=141.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45789999999999999999999999988877777776555 34566778888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEe
Q 028466 86 VIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (208)
|+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+...++..++..++ +.++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888876654 57999999999999642 4567788899999887 699999
Q ss_pred ecC-CCCCHHHHHHHHHHHcC
Q 028466 152 SAK-AGFNIKALFRKIAAALP 171 (208)
Q Consensus 152 S~~-~~~~v~~~~~~l~~~~~ 171 (208)
||+ ++.|++++|+.|.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998764
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=9e-32 Score=197.45 Aligned_cols=163 Identities=26% Similarity=0.494 Sum_probs=141.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4679999999999999999999999998877777776555 445667787889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcC-CeEEEee
Q 028466 87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELN-VMFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 152 (208)
+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+. +.+...+++.++..++ +.++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 78888887654 57999999999999642 4567788899998887 6999999
Q ss_pred cC-CCCCHHHHHHHHHHHcC
Q 028466 153 AK-AGFNIKALFRKIAAALP 171 (208)
Q Consensus 153 ~~-~~~~v~~~~~~l~~~~~ 171 (208)
|+ ++.|++++|+.|.+.+.
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHh
Confidence 99 68999999999998763
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.7e-32 Score=197.15 Aligned_cols=166 Identities=33% Similarity=0.536 Sum_probs=126.4
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
|+..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 45577899999999999999999999998887776666654332 23445566678889999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC----------cCHHHHHHHHHHcCC-eEEEe
Q 028466 84 VAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ----------VSIEEGEAKARELNV-MFIET 151 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 151 (208)
++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+... +...++..++..++. .++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 6888877654 4799999999999966543 367788889988886 99999
Q ss_pred ecCCCCCHHHHHHHHHHHcC
Q 028466 152 SAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~ 171 (208)
||+++.|++++|++|.+.+.
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998874
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5e-31 Score=193.67 Aligned_cols=164 Identities=33% Similarity=0.543 Sum_probs=136.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 567999999999999999999999998887777776655543 3667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+...+...++...+. .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 67877776643 57999999999999654 34667788888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHcCC
Q 028466 153 AKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~ 172 (208)
|+++.|++++|++|.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 75
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=4.8e-32 Score=200.98 Aligned_cols=170 Identities=30% Similarity=0.550 Sum_probs=148.8
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34567899999999999999999998888777777788888888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 163 (208)
++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+... ..+...++...++.++++||+++.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988764 4789999999999965433 225566777889999999999999999999
Q ss_pred HHHHHHcCCCccC
Q 028466 164 RKIAAALPGMETL 176 (208)
Q Consensus 164 ~~l~~~~~~~~~~ 176 (208)
++|.+.+...+..
T Consensus 167 ~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 167 LWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHTCTTC
T ss_pred HHHHHHHHhCccc
Confidence 9999998766544
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=197.25 Aligned_cols=165 Identities=32% Similarity=0.542 Sum_probs=122.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4679999999999999999999999888777667665433 455677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.. .+...++..++..+++ .++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888877654 578999999999997542 5667788899999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHcCCC
Q 028466 153 AKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~~~ 173 (208)
|+++.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999987543
No 77
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=5.5e-31 Score=192.58 Aligned_cols=163 Identities=33% Similarity=0.537 Sum_probs=141.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|.+|+|||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35799999999999999999999999988777777766554 34667888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+...+...++...+. .++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67777776543 47999999999999754 34667788899999887 899999
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028466 153 AKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~ 171 (208)
|+++.|++++|++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=4.4e-31 Score=193.60 Aligned_cols=162 Identities=33% Similarity=0.526 Sum_probs=138.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+|+|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 5689999999999999999999999988777766665 444556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+...+...++..++. +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999986 7887777654 679999999999997543 2667788889999886 699999
Q ss_pred cCCCCCHHHHHHHHHHHc
Q 028466 153 AKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~ 170 (208)
|+++.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=9.7e-32 Score=195.49 Aligned_cols=165 Identities=22% Similarity=0.256 Sum_probs=134.9
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-----------ccceeeeeeeEEEE-EECCeEEEEEEEecCCchhh
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~ 71 (208)
....+.+||+|+|.+|||||||++.+.+ .+... +.++.+.++....+ ..++..+.+.+|||||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3446789999999999999999975554 44333 23455555555544 56677889999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCC------ChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC
Q 028466 72 RSLIPSYIRDSSVAVIVYDVA------SRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN 145 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 145 (208)
...+..+++++|++|+|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+. ....++++++...+
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence 999999999999999999999 5567777777877763 23367999999999999653 67888899999999
Q ss_pred C-eEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 146 V-MFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 146 ~-~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+ .++++||+++.|++++|++|.+.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 8 99999999999999999999988753
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.5e-30 Score=187.90 Aligned_cols=164 Identities=31% Similarity=0.496 Sum_probs=135.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC--CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-hccchhhhhccCC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 83 (208)
.+.+||+|+|.+|||||||+++|++.. +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 33333 3455566677778888888999999999876 5556777889999
Q ss_pred EEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q 028466 84 VAVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 162 (208)
++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..+++.++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 357899999999999776777777888888888999999999999999999
Q ss_pred HHHHHHHcC
Q 028466 163 FRKIAAALP 171 (208)
Q Consensus 163 ~~~l~~~~~ 171 (208)
|++|.+.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3e-31 Score=193.31 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=128.2
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
.+..+.+||+|+|.+|||||||+++|+++.+.. .+.++.+... ..+...+ +.+.+|||||++.+...+..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 344678999999999999999999999999877 6677776433 3334433 6899999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--------CCCeEEEEEeCCCCcCccCcCHHHHHHH------HHHcCCeE
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--------SDVIIVLVGNKTDLVDKRQVSIEEGEAK------ARELNVMF 148 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~iivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~ 148 (208)
|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+... ..++... +...++.+
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999999888865421 2789999999999975532 2222111 13456789
Q ss_pred EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 149 IETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+++||+++.|++++|++|.+.+.+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988543
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=8.1e-30 Score=186.11 Aligned_cols=166 Identities=36% Similarity=0.703 Sum_probs=146.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46999999999999999999999998887778888888888888899988899999999999999888899999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|+|+++..++..+..|+..+......+.|+++|+||+|+.+.......+++.++...++.++++|++++.|+++++++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999888898877665556789999999999977677777888999999999999999999999999999999
Q ss_pred HHcCCC
Q 028466 168 AALPGM 173 (208)
Q Consensus 168 ~~~~~~ 173 (208)
+.+.+.
T Consensus 164 ~~~~~~ 169 (199)
T 2f9l_A 164 TEIYRI 169 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=184.70 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=129.9
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCC-CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..+.+||+|+|.+|+|||||+++|.+.. +...+.++.+ +....+.+++ +.+.+|||||++.+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3578999999999999999999999887 4555556555 4445555655 689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCC
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTERG---SDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAG 156 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~ 156 (208)
+|+|+|+++++++..+..|+..+..... .+.|+++|+||+|+... ....++...+. ..++.++++||+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999888876543 47899999999999643 34455555553 23568999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028466 157 FNIKALFRKIAAALPGM 173 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~ 173 (208)
.|++++|++|.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999988543
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.3e-30 Score=188.68 Aligned_cols=161 Identities=22% Similarity=0.337 Sum_probs=130.0
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++.. +...+ +.+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3568999999999999999999999998877777777665543 34443 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v 159 (208)
|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.... ...++..... ..++.++++||+++.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 99999999999999999988876542 2579999999999996532 2222222221 22457999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028466 160 KALFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
+++|++|.+.+.+
T Consensus 173 ~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 173 DITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998854
No 85
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.5e-29 Score=181.08 Aligned_cols=164 Identities=36% Similarity=0.694 Sum_probs=147.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45699999999999999999999999988888899988888888889998888999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 166 (208)
+|+|+++..+++.+..|+..+......+.|+++++||.|+.+.......+++.++.+.++.++++|++++.++++++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999899888888887766555678999999999997766777888999999999999999999999999999999
Q ss_pred HHHc
Q 028466 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=8.1e-30 Score=186.03 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=123.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|||||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 46789999999999999999999988764 344555443 34566666 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----------------cCCeE
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----------------LNVMF 148 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (208)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++.+++.. .++.+
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998887542 35799999999999964 4556667666553 23579
Q ss_pred EEeecCCCCCHHHHHHHHHHHc
Q 028466 149 IETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
+++||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998765
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=183.14 Aligned_cols=163 Identities=18% Similarity=0.263 Sum_probs=126.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|.+|||||||+++|.++.+. .+.++.+ +....+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988876 4455554 3344555555 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++..... ..++.++++||+++.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 257999999999999643 33444444432 235689999999999999
Q ss_pred HHHHHHHHHcCCCccC
Q 028466 161 ALFRKIAAALPGMETL 176 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~ 176 (208)
+++++|.+.+...+..
T Consensus 167 ~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEH 182 (187)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998655443
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.5e-30 Score=183.95 Aligned_cols=155 Identities=21% Similarity=0.347 Sum_probs=122.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEE
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|.++.+.. +.++.+ +....+...+ +.+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888764 345554 3333444443 68999999999999999999999999999999
Q ss_pred eCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHHHHH
Q 028466 90 DVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~ 163 (208)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ...++..... ..+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999988888876542 3578999999999996532 2222222211 124579999999999999999
Q ss_pred HHHHHHcC
Q 028466 164 RKIAAALP 171 (208)
Q Consensus 164 ~~l~~~~~ 171 (208)
++|.+.+.
T Consensus 154 ~~l~~~i~ 161 (164)
T 1r8s_A 154 DWLSNQLR 161 (164)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999875
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2e-30 Score=188.33 Aligned_cols=159 Identities=19% Similarity=0.346 Sum_probs=121.5
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|||||||+++|+++.+.. +.++.+ +....+...+ +.+.+|||||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 4578999999999999999999999887753 344444 3344455554 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCH
Q 028466 86 VIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v 159 (208)
|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...++..... ..++.++++||+++.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988876533 2579999999999996532 2222222211 12357999999999999
Q ss_pred HHHHHHHHHHcC
Q 028466 160 KALFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 90
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=5.7e-30 Score=182.06 Aligned_cols=158 Identities=21% Similarity=0.331 Sum_probs=126.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.++|+|+|.+|+|||||+++|.++.+.. +.++.+ .....+.+++ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 56999999999999999999999888753 345544 3344455554 689999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIKA 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~ 161 (208)
|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+... ..++.... ...++.++++||+++.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 999999999999888888776543 25799999999999965432 22222222 22356899999999999999
Q ss_pred HHHHHHHHcCC
Q 028466 162 LFRKIAAALPG 172 (208)
Q Consensus 162 ~~~~l~~~~~~ 172 (208)
++++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.1e-29 Score=180.90 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=129.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|.+|+|||||+++|+++. ...+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999888 55566666533 34455554 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...++..... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888876542 2579999999999996542 2333333322 235689999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028466 161 ALFRKIAAALPGM 173 (208)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (208)
+++++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988543
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.3e-29 Score=182.44 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=126.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|++|||||||+++|.++.+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45789999999999999999999988875 34455544 345566666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH------------cCCeEEEeec
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE------------LNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~ 153 (208)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .....++.+.+.. .++.++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988886543 25799999999999965 4455566555442 3457999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028466 154 KAGFNIKALFRKIAAA 169 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~ 169 (208)
+++.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999865
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.1e-29 Score=182.70 Aligned_cols=158 Identities=18% Similarity=0.302 Sum_probs=124.8
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCE
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|.+|+|||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 346789999999999999999999999887 3444555433 34455555 689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCC
Q 028466 85 AVIVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFN 158 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~ 158 (208)
+|+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++..... ..++.++++||+++.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999888876543 357999999999999653 23344443332 2345899999999999
Q ss_pred HHHHHHHHHHH
Q 028466 159 IKALFRKIAAA 169 (208)
Q Consensus 159 v~~~~~~l~~~ 169 (208)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=3.4e-29 Score=180.20 Aligned_cols=159 Identities=21% Similarity=0.329 Sum_probs=124.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|.+|||||||+++|.++.+. .+.++.+. ....+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987653 33455543 334455554 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-----HcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+... ..++..... ..++.++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988888775542 35789999999999965432 233322211 224579999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=3.9e-30 Score=185.59 Aligned_cols=165 Identities=22% Similarity=0.377 Sum_probs=122.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC--CCCCCccceeeeeeeEEEEEE---CCeEEEEEEEecCCchhhccchhhhhccCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
++||+|+|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+|||+|++.+......+++++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 455556677777766655443 234568999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC---HHHHHHHHHHcCCe----EEEeecCC
Q 028466 84 VAVIVYDVASR-QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS---IEEGEAKARELNVM----FIETSAKA 155 (208)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~ 155 (208)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+..... ......++..+++. ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57888999998887653 468999999999996543321 22334455555665 99999999
Q ss_pred CC-CHHHHHHHHHHHcCCCc
Q 028466 156 GF-NIKALFRKIAAALPGME 174 (208)
Q Consensus 156 ~~-~v~~~~~~l~~~~~~~~ 174 (208)
+. +++++++.|.+.+....
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 97 99999999998886544
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2.9e-29 Score=182.77 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=121.3
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhccch---hhhh
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLI---PSYI 79 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~ 79 (208)
....+.+||+|+|.+|||||||++++.+. +......+.+.........+. +..+.+.+|||+|++.|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34467899999999999999999987764 332222222222222222332 455789999999999988877 7899
Q ss_pred ccCCEEEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-------cCcCHHHHHHHHH----HcCC
Q 028466 80 RDSSVAVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-------RQVSIEEGEAKAR----ELNV 146 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~ 146 (208)
+++|++|+|||++++ +++..+..|+..+... ..+.|+++|+||+|+.+. +++.......++. ..++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999986 6777777777776433 357999999999998542 3344455667777 6678
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHc
Q 028466 147 MFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
.++++||++ .|++++|+.|.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999875
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=6.1e-30 Score=185.13 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=126.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|..+.+.. +.++.+ +....+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999999887653 344444 3334455554 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHH-----HHcCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-----RELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~ 160 (208)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..++.... ...++.++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999888888776543 25799999999999965422 22222222 2234579999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
+++++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988743
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2.9e-28 Score=190.76 Aligned_cols=163 Identities=31% Similarity=0.504 Sum_probs=141.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+++|.+|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 45899999999999999999999998877777766543 35566788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCc------------cCcCHHHHHHHHHHcCC-eEEEeec
Q 028466 88 VYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDK------------RQVSIEEGEAKARELNV-MFIETSA 153 (208)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 153 (208)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+...++..++...++ .++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999886 6777777654 37999999999998653 45778888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHcCC
Q 028466 154 KAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 154 ~~~~~v~~~~~~l~~~~~~ 172 (208)
+++.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988743
No 99
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.5e-28 Score=174.27 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=118.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR 80 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 80 (208)
|+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 3568999999999999999999998876555556666666666666665 579999999988765 23355554
Q ss_pred --cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 81 --DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 81 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+........ +.+.++..++++++++||+++.|
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 8999999999987543 3456666554 3689999999999865444332 35677778889999999999999
Q ss_pred HHHHHHHHHHHc
Q 028466 159 IKALFRKIAAAL 170 (208)
Q Consensus 159 v~~~~~~l~~~~ 170 (208)
++++|++|.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.1e-31 Score=194.28 Aligned_cols=162 Identities=33% Similarity=0.539 Sum_probs=134.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5679999999999999999999998888766666654333 444556666778899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc------------CcCHHHHHHHHHHcCC-eEEEee
Q 028466 87 IVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR------------QVSIEEGEAKARELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S 152 (208)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .....++..++...++ .++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999876 7777776543 378999999999996542 4455667777788887 899999
Q ss_pred cCCCCCHHHHHHHHHHHc
Q 028466 153 AKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~ 170 (208)
|+++.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998764
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-28 Score=175.60 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=123.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|++|+|||||+++|.++.+ ..+.++.+. ....+.+++ ..+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999998877 344455543 334455555 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++...... .++.++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888887653 367999999999999653 233444433322 23479999999999999
Q ss_pred HHHHHHHHHcC
Q 028466 161 ALFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
+++++|.+.+.
T Consensus 169 ~l~~~l~~~~~ 179 (183)
T 1moz_A 169 EGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=189.47 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=125.0
Q ss_pred CCCCCcceeEEEEcCC---------CCcHHHHHHHhhc---CCCCCCcccee-eeeeeEEEE--------------EECC
Q 028466 3 PVSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLED 55 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 55 (208)
|...++.+||+|+|.+ |||||||+++|++ +.+...+.++. +.++....+ ..++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445678999999999 9999999999998 55655555654 444332222 1345
Q ss_pred eEEEEEEEe-----------------------cCCchhhccchhhhhc---------------------cCCEEEEEEeC
Q 028466 56 RTVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVIVYDV 91 (208)
Q Consensus 56 ~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 91 (208)
..+.+.||| ++|++.|..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 667899999 6677777777777776 79999999999
Q ss_pred CCh--hhHHhHHHHHHHHHhh-cCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHH
Q 028466 92 ASR--QSFLNTTKWVEEVRTE-RGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-LNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 92 ~~~--~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
+++ ++++.+..|+..+... ...+.|+++|+||+|+.+.+.+ .+++.++.. .++.++++||+++.|++++|++|.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 8999999999988765 3357999999999999654433 466777766 478999999999999999999998
Q ss_pred HHc
Q 028466 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 251 ~~l 253 (255)
T 3c5h_A 251 QLI 253 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.9e-27 Score=177.06 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=117.8
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh---------ccchh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~ 76 (208)
+.+.++|+|+|.+|||||||+++|++..+.....+..+.+.....+...+ ..+.+|||||+... ...+.
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 35679999999999999999999998877533334444444444444554 57999999998321 11223
Q ss_pred hhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH---HHHHHHHHcC--CeEE
Q 028466 77 SYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE---EGEAKARELN--VMFI 149 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 149 (208)
.++..+|++|+|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+..++... ....++...+ +.++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 4578889999999999887664 233455555432 236899999999999766655543 4566666776 8999
Q ss_pred EeecCCCCCHHHHHHHHHHHcCCC
Q 028466 150 ETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
++||+++.|++++|++|.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988543
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=6.3e-28 Score=172.60 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=120.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|.+|+|||||+++|+++.+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4679999999999999999999999988777777777666666777777 45789999999999999999999999999
Q ss_pred EEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC---------CeEEEeecC
Q 028466 87 IVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN---------VMFIETSAK 154 (208)
Q Consensus 87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~ 154 (208)
+|+|++++ ++++.+ ..+ ...+.|+++|+||+|+.+. ...+........+ +.++++||+
T Consensus 84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999873 333322 222 2246899999999999653 2233333333221 489999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q 028466 155 AGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~ 173 (208)
++.|++++|++|.+.+...
T Consensus 154 ~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999887543
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.4e-27 Score=173.91 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=114.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe-EEEEEEEecCCchhhcc-chhhhhccCCE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 84 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.+ .+.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 4679999999999999999999999888766543 3333333 555543 47899999999999988 78888999999
Q ss_pred EEEEEeCCChh-hHHhHHHHHHHHHhh---cCCCCeEEEEEeCCCCcCccCcC--HHHHHHHHH----------------
Q 028466 85 AVIVYDVASRQ-SFLNTTKWVEEVRTE---RGSDVIIVLVGNKTDLVDKRQVS--IEEGEAKAR---------------- 142 (208)
Q Consensus 85 ~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~--~~~~~~~~~---------------- 142 (208)
+|+|||+++.+ ++.....++..+... ...+.|+++|+||+|+.+..... ...+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 455555544443322 23568999999999996543311 111111111
Q ss_pred -----------------Hc--CCeEEEeecCCC------CCHHHHHHHHHHHc
Q 028466 143 -----------------EL--NVMFIETSAKAG------FNIKALFRKIAAAL 170 (208)
Q Consensus 143 -----------------~~--~~~~~~~S~~~~------~~v~~~~~~l~~~~ 170 (208)
.+ ++.|+++||+++ .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998753
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=2.8e-27 Score=183.50 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=127.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-----ccchhhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI 79 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 79 (208)
..+||+++|.+|||||||+++|+++... ..+.+|.+..+ ..+.+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999887332 13344444444 3444444 478999999999988 77888899
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcC--ccC----cCHHHHHHHHHHcC---CeE
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVD--KRQ----VSIEEGEAKARELN---VMF 148 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 148 (208)
+++|++|+|||++++++++.+..|...+.... ..+.|+++|+||+|+.+ .++ ....++.+++..++ +.+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998877765554332 35799999999999976 333 44577888888887 799
Q ss_pred EEeecCCCCCHHHHHHHHHHHcCC
Q 028466 149 IETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+++||++ .++.++|..+.+.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999888876643
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.8e-28 Score=187.59 Aligned_cols=159 Identities=21% Similarity=0.337 Sum_probs=121.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+... .++.+.. ...+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3578999999999999999999998887543 3444433 33444544 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|||+++++++..+..|+..+.... ..++|++||+||+|+.+... ..++...... .++.++++||+++.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999888887776543 25799999999999965432 2333332222 23479999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.7e-27 Score=170.88 Aligned_cols=161 Identities=16% Similarity=0.232 Sum_probs=126.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY 78 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~ 78 (208)
+.++.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .....+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 346789999999999999999999998776555556666666667777766 679999999998774 344555
Q ss_pred hc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 79 IR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 79 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
+. .+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+....... ...+.++..+++.++++|++++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 54 4999999999874 4555667666654 468999999999986544433 3567777888899999999999
Q ss_pred CCHHHHHHHHHHHcCCCc
Q 028466 157 FNIKALFRKIAAALPGME 174 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~ 174 (208)
.|++++|++|.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999987654
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=2e-27 Score=195.58 Aligned_cols=167 Identities=21% Similarity=0.326 Sum_probs=126.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+.. +.+|.+.++ ..+.+.+ +.+.+|||||++.+...+..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999888653 345554433 3344444 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCCCcCccCcCHHHHHHHHHH-----cCCeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTDLVDKRQVSIEEGEAKARE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~ 160 (208)
+|||+++++++..+..|+..+..... .++|++||+||+|+.+.. ...++...... .++.++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999998888865432 579999999999996532 23333322211 23469999999999999
Q ss_pred HHHHHHHHHcCCCccCCccc
Q 028466 161 ALFRKIAAALPGMETLSSTK 180 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~ 180 (208)
++|++|.+.+.......++.
T Consensus 473 ~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp HHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhcCCCCCcc
Confidence 99999999997666655443
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=3.2e-27 Score=171.48 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=109.9
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhcc
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS 73 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 73 (208)
++..+.++|+|+|.+|+|||||+++|++..+...+.++.+.+........+. .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 3445679999999999999999999998876554445444444444444443 589999999 777777
Q ss_pred chhhhhccC---CEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--HHHHH-HHHHcCCe
Q 028466 74 LIPSYIRDS---SVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--EEGEA-KARELNVM 147 (208)
Q Consensus 74 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~ 147 (208)
.+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+..+... .++.+ +....++.
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 788888777 9999999999866655432 1222222 4689999999999976544322 22222 22223579
Q ss_pred EEEeecCCCCCHHHHHHHHHHHcC
Q 028466 148 FIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
++++||+++.|+++++++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998774
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.3e-25 Score=174.20 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=129.7
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEEC-CeEEEEEEEecCCchhhc---------
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR--------- 72 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~--------- 72 (208)
.++++.-.|+++|.+|+|||||+|+|++..+.. ...+..+..........+ + .++.||||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 345677899999999999999999999988753 333444444444444454 4 679999999986543
Q ss_pred -cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEE
Q 028466 73 -SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFI 149 (208)
Q Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 149 (208)
.....+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+...++ ..++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 5667788999999999999987777776666666654 358999999999997444555666677777765 7899
Q ss_pred EeecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466 150 ETSAKAGFNIKALFRKIAAALPGMETLS 177 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~~~~~~ 177 (208)
++||+++.|+++++++|.+.+++.+...
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~ 187 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLF 187 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSS
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCC
Confidence 9999999999999999999997655433
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.5e-26 Score=162.76 Aligned_cols=150 Identities=20% Similarity=0.188 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh-------hccchhhhhcc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 81 (208)
.||+++|.+|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 233445555566666666663 689999999886 34455667899
Q ss_pred CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCCHH
Q 028466 82 SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 160 (208)
+|++|+|+|++++.+.. ..++..+... .+.|+++|+||+|+.+.. .++..++ .+++ .++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999998753322 2233333322 358999999999996542 2233344 5676 89999999999999
Q ss_pred HHHHHHHHHc
Q 028466 161 ALFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999876
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=9.7e-27 Score=166.05 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=115.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc--------hhhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
+.++|+|+|.+|+|||||+++|.+..+. ....++.+.++....+.+++ ..+.+|||||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987643 23344555666667777776 35899999998653221 1245
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+.... ++...+..++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCCC
Confidence 78999999999999877765 346777776655567999999999998543110 1112356899999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028466 159 IKALFRKIAAALPG 172 (208)
Q Consensus 159 v~~~~~~l~~~~~~ 172 (208)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998743
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=3.1e-26 Score=173.36 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=122.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------hhhhh-
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI- 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~- 79 (208)
++.++|+|+|.+|||||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 5679999999999999999999998877555556666666666666655 67999999999877652 24555
Q ss_pred -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
..+|++|+|+|+++.++.. .|...+.. .+.|+++|+||+|+........ ....++..++++++++||+++.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865443 34444443 3699999999999865544433 46778888899999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028466 159 IKALFRKIAAALP 171 (208)
Q Consensus 159 v~~~~~~l~~~~~ 171 (208)
+++++++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=5.8e-27 Score=169.26 Aligned_cols=156 Identities=23% Similarity=0.301 Sum_probs=115.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC-----------chhhccchhhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 78 (208)
+||+|+|.+|+|||||+++|++..+...+.++.+.+. ..+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999988766666555433 233333 588999999 66777777777
Q ss_pred hcc-CCEEEEEEeCCChhhHHhH-HHHHHH--------H-HhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCe
Q 028466 79 IRD-SSVAVIVYDVASRQSFLNT-TKWVEE--------V-RTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVM 147 (208)
Q Consensus 79 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
++. ++++++++++.+..++..+ ..|... + ......+.|+++|+||+|+.... ....+.++..++..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 6655555555555666664 455432 1 22223579999999999996543 55677788887764
Q ss_pred -------EEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 148 -------FIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 148 -------~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
++++||+++.|++++|++|.+.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999885443
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=4.4e-27 Score=181.35 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=117.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc---chhhhhccCCE
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 84 (208)
||+++|..|||||||++++.++.++. ...+|.+.++.. + + ..+++.||||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 245666655543 2 2 236899999999999975 46889999999
Q ss_pred EEEEEeCCCh--hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc-------cCcCHHHHHHHHHH----cCCeEEEe
Q 028466 85 AVIVYDVASR--QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK-------RQVSIEEGEAKARE----LNVMFIET 151 (208)
Q Consensus 85 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (208)
+|+|||++++ +.......|+..+... .++.|+++++||+|+.++ +++...+.+++++. +++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999986 3333344445444433 357999999999999754 23445556666664 57899999
Q ss_pred ecCCCCCHHHHHHHHHHHcCCC
Q 028466 152 SAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 152 S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
||++ .+|.++|..|.+.+...
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999999887643
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=5.4e-27 Score=194.49 Aligned_cols=167 Identities=20% Similarity=0.344 Sum_probs=126.8
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEE------E--EECCeEEEEEEEecCCchhhccchh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------M--YLEDRTVRLQLWDTAGQERFRSLIP 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (208)
..++.+||+++|.+|||||||+++|++..+...+.++.+.++.... + ..++..+.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4577899999999999999999999999888777788776665432 1 1223346899999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
.+++.+|++|+|+|+++. +....|+..+.... .+.|+++|+||+|+.+..+....+++..+...+++++++||+++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999754 45677877777654 46899999999999877777888888888888999999999999
Q ss_pred CCHHHHHHHHHHHcCCCcc
Q 028466 157 FNIKALFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~ 175 (208)
.|++++++.|.+.+...+.
T Consensus 193 ~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp --CTTHHHHHHHHHTCTTS
T ss_pred cCHHHHHHHHHHHHhcccc
Confidence 9999999999999876544
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=1.2e-26 Score=177.09 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=121.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 76 (208)
|++++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+ ..+.+|||||+..+.. ...
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 4579999999999999999999998877556667777777777777665 4688999999887662 222
Q ss_pred hhh--ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466 77 SYI--RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (208)
.++ +.+|++|+|+|+++.+....+..+ +... +.|+++|+||+|+.+..... .....+...++++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcC
Confidence 333 799999999999876555443333 3332 58999999999986543322 23466777789999999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q 028466 155 AGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~ 173 (208)
+|.|+++++++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999888654
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.5e-25 Score=162.45 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=113.2
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhcc
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS 73 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 73 (208)
.+....++|+|+|.+|+|||||+++|++..+. ...++.+.+........+. .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 44466799999999999999999999988743 2233333333333333333 578999999 666777
Q ss_pred chhhhhccC---CEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcC-
Q 028466 74 LIPSYIRDS---SVAVIVYDVASRQSF--LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELN- 145 (208)
Q Consensus 74 ~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~- 145 (208)
.+..+++.+ |++++|+|+++..+. ..+..|+.. .+.|+++|+||+|+.+..+ ....++..++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 777777776 999999999864322 223333322 2589999999999964432 23345556666544
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 146 VMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 146 ~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
++++++||+++.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 699999999999999999999998753
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=4.2e-26 Score=172.38 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=119.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc----------chhhhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 79 (208)
.+|+++|.+|||||||+|+|++........++.+.+.....+.+++. .+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988766566677777777777777774 799999999887654 445566
Q ss_pred --ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCC
Q 028466 80 --RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGF 157 (208)
Q Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 157 (208)
..+|++|+|+|+++.+....+..+ +. ..+.|+++|+||+|+.+...... ....+...++++++++||+++.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986555443332 22 23689999999999865443322 3455677789999999999999
Q ss_pred CHHHHHHHHHHH
Q 028466 158 NIKALFRKIAAA 169 (208)
Q Consensus 158 ~v~~~~~~l~~~ 169 (208)
|+++++++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999987
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=4.8e-26 Score=173.32 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=116.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc------cchhhhhc--
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-- 80 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 80 (208)
.++|+++|.+|||||||+|+|++........++.+.+.... .+.. ...+.+|||||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999998765444445544443333 3343 4579999999998775 34556665
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
.+|++|+|+|+++.+.. ..|...+.. .+.|+++|+||+|+....... .....++..++++++++||+++.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999876544 345444543 368999999999986544333 34567778889999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028466 161 ALFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999987643
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.7e-25 Score=170.69 Aligned_cols=159 Identities=23% Similarity=0.241 Sum_probs=123.9
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc------chhhhh-
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI- 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 79 (208)
|+.++|+|+|++|+|||||+++|++..+.....++.+.+.....+.+.+ ..+.+|||||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 4579999999999999999999998877555667777777777777777 4599999999887766 455555
Q ss_pred -ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 80 -RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
.++|++|+|+|+++.+ ....+...+... ...|+++|+||+|+.+...... ....+...++++++++|++++.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCC
Confidence 6899999999998753 333333444332 1289999999999865433333 26677778899999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028466 159 IKALFRKIAAALPGM 173 (208)
Q Consensus 159 v~~~~~~l~~~~~~~ 173 (208)
++++++.|.+.+...
T Consensus 153 i~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 153 VEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987543
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.4e-25 Score=166.25 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=110.0
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC--CCccceeeeeeeEEEEEEC-CeEEEEEEEecCCc----------hhh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ERF 71 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~ 71 (208)
.....++|+|+|.+|+|||||+++|++.... ....+..+.+.. ..... .....+.||||||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 3456799999999999999999999988732 222233333322 23333 23357999999994 445
Q ss_pred ccchhhhhcc---CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHH---
Q 028466 72 RSLIPSYIRD---SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKARE--- 143 (208)
Q Consensus 72 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~--- 143 (208)
......+++. +|++|+|+|++++.+. ....++..+.. .+.|+++|+||+|+.+..+. ...++.+....
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 5666666666 7889999999864221 12333444433 35899999999999654332 12223333333
Q ss_pred ----cCCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 144 ----LNVMFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 144 ----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
.+.+++++||+++.|+++++++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999999986543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=1e-24 Score=168.40 Aligned_cols=163 Identities=19% Similarity=0.164 Sum_probs=114.2
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchh--------h
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F 71 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~ 71 (208)
|++. .+..+|+|+|.+|+|||||+|+|++..+.. ...+..+.+........++ .++.||||||+.. +
T Consensus 1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHH
Confidence 4553 567889999999999999999999988753 2233333333333333443 6799999999876 4
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--CCeE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWV-EEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--NVMF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~ 148 (208)
......+++.+|++++|+|++++.+.. ..|+ ..+... ..+.|+++|+||+|+...... +...+..+ ...+
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~ 149 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEP 149 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcE
Confidence 455667889999999999998753332 3444 334332 246899999999999643220 22333332 3579
Q ss_pred EEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 149 IETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
+++||+++.|+++++++|.+.+++.+
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999886544
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=4.9e-26 Score=168.14 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=107.5
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhh
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 79 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (208)
.....+.++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ....+.+|||||++.+...+..++
T Consensus 6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~ 76 (218)
T 1nrj_B 6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYL 76 (218)
T ss_dssp ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHH
T ss_pred CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHH
Confidence 3344578999999999999999999999887654 2344444332 235789999999999998888888
Q ss_pred cc----CCEEEEEEeCC-ChhhHHhHHHHHHHHHhh----cCCCCeEEEEEeCCCCcCccCcC------HHHHHHHHHHc
Q 028466 80 RD----SSVAVIVYDVA-SRQSFLNTTKWVEEVRTE----RGSDVIIVLVGNKTDLVDKRQVS------IEEGEAKAREL 144 (208)
Q Consensus 80 ~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~------~~~~~~~~~~~ 144 (208)
+. +|++|+|+|++ +++++.....|+..+... ...+.|+++|+||+|+....... ..++..++...
T Consensus 77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~ 156 (218)
T 1nrj_B 77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 156 (218)
T ss_dssp HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 87 89999999999 888898888888877654 33579999999999997655433 34556666666
Q ss_pred CCeEEEeecCCCCC
Q 028466 145 NVMFIETSAKAGFN 158 (208)
Q Consensus 145 ~~~~~~~S~~~~~~ 158 (208)
++.++++|++++.+
T Consensus 157 ~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 157 KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHC--------
T ss_pred hccccccccccccc
Confidence 78899999998865
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=3.5e-24 Score=174.36 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=99.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 78 (208)
..++|+|+|.+|+|||||+|+|++... .....++.+.+.....+.+++ +.+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358999999999999999999998754 234456667777777777777 579999999987765443 336
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++.+|++++|+|++++.+++.+..+...+.... +.|+++|+||+|+.+.... ..+.+......+++++||+++.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 789999999999998877654333333232222 6999999999999765432 22233333247899999999999
Q ss_pred HHHHHHHHHHHcC
Q 028466 159 IKALFRKIAAALP 171 (208)
Q Consensus 159 v~~~~~~l~~~~~ 171 (208)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=6.6e-25 Score=175.92 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=117.6
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc-------hh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 76 (208)
.....++|+|+|..|+|||||+++|++..+. ....++.+++.....+.+.+.. .+.+|||||++.+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999988763 3445566667777777776643 7999999999877654 35
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCC
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAG 156 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 156 (208)
.++..+|++|+|+|++.. .....|+..+... +.|+++|+||+|+...... ...+.+...++++++++||+++
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 578899999999999432 2335566655543 6899999999999765443 4556666677889999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028466 157 FNIKALFRKIAAALPGM 173 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~ 173 (208)
.|++++|++|.+.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGD 197 (423)
T ss_dssp TSTTTHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999999999655
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.3e-24 Score=174.60 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=116.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCc----------hhhccch
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (208)
...++|+++|.+|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999988763 344566666776667777774 5899999998 4444433
Q ss_pred h-hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHH-H----cCCeEE
Q 028466 76 P-SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAR-E----LNVMFI 149 (208)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~ 149 (208)
. .+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+..+....+...... . .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 478899999999999987666654 45555543 468999999999997655543334433332 2 257999
Q ss_pred EeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 150 ETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
++||++|.|++++|+.+.+.+....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEecccCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998876543
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.5e-23 Score=163.01 Aligned_cols=161 Identities=21% Similarity=0.189 Sum_probs=120.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc---------cchhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 77 (208)
...++|+++|.+|+|||||+++|.+........+..+.+.....+...+ ..+.+|||||...+. .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998775332233333344444444443 579999999975432 11223
Q ss_pred hhccCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCC
Q 028466 78 YIRDSSVAVIVYDVASRQ--SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 155 (208)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..... ..+...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998776 67777888888876543 699999999999965433 2455666677788999999999
Q ss_pred CCCHHHHHHHHHHHcCC
Q 028466 156 GFNIKALFRKIAAALPG 172 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~~ 172 (208)
|+|+++++++|.+.+.+
T Consensus 320 g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999988743
No 130
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=5.5e-23 Score=165.19 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=107.9
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeee--EEEEEE-------------C--C----eEE
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFL--SKTMYL-------------E--D----RTV 58 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~--~~~~~~-------------~--~----~~~ 58 (208)
|+.....++|+++|+.++|||||+++|++. .+..++.+.++++.. ...+.. + + ...
T Consensus 2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence 566667899999999999999999999854 334444454444332 222211 1 1 136
Q ss_pred EEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHH
Q 028466 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEE 136 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~ 136 (208)
.+.||||||++.|.......+..+|++|+|+|++++....+..+.+..+... ...|+++++||+|+.+..+ ...++
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 8999999999999988888888999999999998532112222222223222 1257999999999976443 23456
Q ss_pred HHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 137 GEAKAREL---NVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 137 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+++++..+ +++++++||++++|+++++++|.+.++..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 66666653 57899999999999999999999987643
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=6.1e-24 Score=172.99 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=122.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCeEEEEEEEecCC----------chhhccch
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (208)
...++|+++|.+|+|||||+++|++... .....++.+.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4579999999999999999999997653 3344556666666667777774 699999999 56666654
Q ss_pred h-hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc-----CCeEE
Q 028466 76 P-SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL-----NVMFI 149 (208)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (208)
. .+++.+|++|+|+|++++-. +....|+..+.. .+.|+++|+||+|+.+..+....++.+.+.+. +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 47899999999999986422 222334444433 45899999999999876666667777777665 57999
Q ss_pred EeecCCCCCHHHHHHHHHHHcCCCccCC
Q 028466 150 ETSAKAGFNIKALFRKIAAALPGMETLS 177 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~~~~~~ 177 (208)
++||++|.|++++|++|.+.+.......
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~ 374 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLRV 374 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999998875554443
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.3e-23 Score=170.33 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh---------hccchhhhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (208)
.+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||||++. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988753 344567777777788888774 589999999764 344567789
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH-HHHHHHcCC-eEEEeecCCCC
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG-EAKARELNV-MFIETSAKAGF 157 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~ 157 (208)
+.+|++++|+|+.++-+.. ..++..+... .++|+++|+||+|+.... ..+. ..+. .++. .++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~--d~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKE--DESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHH--HHHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHH--HHHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 9999999999998643332 2223332222 258999999999985321 1222 2332 4565 78999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028466 158 NIKALFRKIAAALPGM 173 (208)
Q Consensus 158 ~v~~~~~~l~~~~~~~ 173 (208)
|+++++++|.+.+++.
T Consensus 152 gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 152 NLDTMLETIIKKLEEK 167 (439)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999999888643
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.1e-23 Score=164.74 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=119.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchhhh---hccCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 83 (208)
+|+|+|.+|+|||||+++|++........+..+.+.....+.+++. ..+.+|||||+.. +..+...+ +..+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6889999999999999999977643222333333333444555542 3699999999643 33333444 44599
Q ss_pred EEEEEEeCCC---hhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCC
Q 028466 84 VAVIVYDVAS---RQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAG 156 (208)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 156 (208)
++|+|+|+++ +++++.+..|+..+..+.. .+.|+++|+||+|+.... +..+.+...+. ..++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 6788888888888876542 478999999999996432 34555666665 68999999999
Q ss_pred CCHHHHHHHHHHHcCCCcc
Q 028466 157 FNIKALFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~ 175 (208)
.|+++++++|.+.+.+.+.
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999976544
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=3.9e-23 Score=168.90 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=114.2
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcCC-------CCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 77 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 77 (208)
..|+.++|+++|+.++|||||+++|++.. +..+..++++++.....+.+++ +.+.+|||||++.|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 34678999999999999999999999776 3445556666666666666666 67999999999999999999
Q ss_pred hhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc--CcCHHHHHHHHHHc----CCeE
Q 028466 78 YIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR--QVSIEEGEAKAREL----NVMF 148 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~ 148 (208)
++..+|++|+|+|+++ +++.+.+ ..+.. .+.|+++|+||+|+.+.. +....++..++... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999987 3333332 22222 257889999999997532 11234455556555 5789
Q ss_pred EEeecCCCCCHHHHHHHHHHHcC
Q 028466 149 IETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+++||++|+|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999764
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=6.6e-23 Score=166.98 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=116.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCch-hhcc--------chhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY 78 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 78 (208)
.++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||+. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987642 34456667777777788876 569999999987 5442 23567
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
++.+|++|+|+|++++.+++... ++..+ .+.|+++|+||+|+.+. ....++..++ ..+++++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 89999999999999876665432 22222 36899999999999643 3344444443 2346899999999999
Q ss_pred HHHHHHHHHHHcC
Q 028466 159 IKALFRKIAAALP 171 (208)
Q Consensus 159 v~~~~~~l~~~~~ 171 (208)
+++++++|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999865
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=6.9e-22 Score=158.54 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=117.1
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-ee--------------eeeEEEEEE---CCeEEEEEEEecCC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GI--------------DFLSKTMYL---EDRTVRLQLWDTAG 67 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~--------------~~~~~~~~~---~~~~~~~~i~D~~G 67 (208)
..+.++|+++|.+++|||||+++|++........... +. +........ ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567999999999999999999998754322110000 00 000000000 11236899999999
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc--CHHHHHHHHHHc-
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV--SIEEGEAKAREL- 144 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~- 144 (208)
++.|...+..++..+|++|+|+|++++.++.+..+++..+.... ..|+++|+||+|+.+..+. ...++.+++..+
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998665667777776655443 2589999999999754321 122333333332
Q ss_pred --CCeEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 145 --NVMFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 145 --~~~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
+++++++||++++|+++++++|.+.++...
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 568999999999999999999999876543
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.1e-22 Score=164.70 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=107.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|.+++|||||+++|++. ....++.++.+++.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45699999999999999999999543 11223335566666666665555
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhh---HH---hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQS---FL---NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 128 (208)
..+.||||||++.|...+..++..+|++|+|+|+++... ++ +..+.+..+.. .+.| +++++||+|+..
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence 589999999999999999999999999999999987421 11 22222222222 2466 899999999853
Q ss_pred c--cC----cCHHHHHHHHHHcC------CeEEEeecCCCCCHHHHHH
Q 028466 129 K--RQ----VSIEEGEAKARELN------VMFIETSAKAGFNIKALFR 164 (208)
Q Consensus 129 ~--~~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~ 164 (208)
. .+ ....++..++..++ ++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2 11 11233444444443 4799999999999999655
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=5.9e-24 Score=172.16 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=110.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCch--------hhccchhhhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 79 (208)
..+|+|+|.+|||||||+|+|++..+.. ...++.+.+.......+.+ ..+.+|||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 4799999999999999999999876642 2334445455444444444 469999999985 5666778889
Q ss_pred ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecCCCCC
Q 028466 80 RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAKAGFN 158 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 158 (208)
+.+|++|+|+|+.++.+... .++..+.. ..+.|+++|+||+|+.+.... ...+. .++. .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999987544432 33333332 246899999999998643211 11122 3454 789999999999
Q ss_pred HHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466 159 IKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN 195 (208)
Q Consensus 159 v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
+.+++++|.+.+.+.+..........+.+-+.+..+|
T Consensus 152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGK 188 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK 188 (436)
T ss_dssp HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSH
T ss_pred hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCH
Confidence 9999999999987543221122223444555555444
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=3e-22 Score=161.03 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=113.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC---CCCCCccceeeeeeeEEEEEE---------------C--C----eEEEEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYL---------------E--D----RTVRLQL 62 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~~i 62 (208)
...++|+++|+.++|||||+++|++. .+..+..+.++++.......+ . + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999854 334444454444333222222 0 1 1368999
Q ss_pred EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHH
Q 028466 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAK 140 (208)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~ 140 (208)
|||||++.|.......+..+|++|+|+|+++.....+..+.+..+.... ..|+++|+||+|+.+... ...++++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 165 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF 165 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence 9999999999888888899999999999985321122222222232222 257899999999975432 223445555
Q ss_pred HHH---cCCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 141 ARE---LNVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 141 ~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+.. .+++++++||+++.|+++++++|.+.++..
T Consensus 166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 544 357899999999999999999999987643
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=4e-22 Score=165.93 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=112.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC--CC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCch
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (208)
+..+|+|+|+.++|||||+++|+... .. .+..+..++......+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35789999999999999999998521 11 111222333333333333 4556899999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC---
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV--- 146 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (208)
+|...+..+++.+|++|+|+|+++..+......|+.... .+.|+++|+||+|+.... ......++...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998666666666655443 368999999999996543 12234455555565
Q ss_pred eEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 147 MFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 147 ~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
.++++||+++.|+++++++|.+.++...
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 4899999999999999999999987644
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=4.9e-22 Score=165.16 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=115.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC--CCC-------------CCccceeeeeeeEEEEEE---CCeEEEEEEEecCCc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD-------------NTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 68 (208)
.+..+|+|+|+.++|||||+++|+.. ... .+..+.+++......+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34679999999999999999999752 111 111222333222233333 455688999999999
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC--
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-- 146 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 146 (208)
.+|...+..++..+|++|+|+|++++.+......|..... .+.|+++|+||+|+.... ......++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999999999999999999999998766666666655443 368999999999996543 12233444455565
Q ss_pred -eEEEeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 147 -MFIETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 147 -~~~~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
.++++||++|.|+++++++|.+.++...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 4899999999999999999999987543
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=5.9e-23 Score=156.84 Aligned_cols=166 Identities=15% Similarity=0.249 Sum_probs=97.0
Q ss_pred CCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCc-------cceeeeeeeEEEEEECCeEEEEEEEecCCchh----
Q 028466 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---- 70 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---- 70 (208)
|+.....++|+|+|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.+|||||...
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 555567899999999999999999998766553 233 45555566555555566557899999999732
Q ss_pred ---hccch-------hhhhcc-------------CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 71 ---FRSLI-------PSYIRD-------------SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 71 ---~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
+..+. ..++.. +|+++++++.+.......-..++..+.. ++|+++|+||+|+.
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTL 157 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGS
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCC
Confidence 22222 333333 7899999977652111112233333332 69999999999986
Q ss_pred CccCcC--HHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 128 DKRQVS--IEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
...+.. ...+.+.+...++.++++|+.+++|+++++++|.+.++-
T Consensus 158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 433221 234556666778999999999999999999999988743
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=2.3e-22 Score=152.40 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=108.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC-CCCCccce-eeeeeeEEEEEECCeEEEEEEEecCCchhhccch---------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------- 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 75 (208)
.+.++|+|+|.+|+|||||+++|++.. +.....++ .+.+.......+++ ..+.||||||+..+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 467999999999999999999999877 44344443 45555555566666 569999999987654322
Q ss_pred --hhhhccCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEe-CCCCcCccCcCH-------HHHHHHHHHc
Q 028466 76 --PSYIRDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGN-KTDLVDKRQVSI-------EEGEAKAREL 144 (208)
Q Consensus 76 --~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~-------~~~~~~~~~~ 144 (208)
..+++.+|++|+|+|+++..... .+..++..+.... ...|+++|+| |+|+.+. .... .++...+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 23678899999999998622221 2233333332111 1345555555 9999643 2111 2244456665
Q ss_pred CCe---E--EEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 145 NVM---F--IETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 145 ~~~---~--~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
+.. + +++||+++.|++++|++|.+.+...
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 543 2 7899999999999999999987653
No 144
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=5e-22 Score=153.47 Aligned_cols=162 Identities=17% Similarity=0.189 Sum_probs=112.6
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccch
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~ 75 (208)
..+..+|+|+|++|+|||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||+. .+....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 3566789999999999999999999887632 2223223222233344444 579999999987 234445
Q ss_pred hhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCC-eEEEeecC
Q 028466 76 PSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNV-MFIETSAK 154 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~ 154 (208)
..+++.+|++++|+|+++ +.....++..... ..+.|+++++||+|+..........+..+...++. .++++|++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 667889999999999975 3333334333222 24689999999999865222223344445455565 79999999
Q ss_pred CCCCHHHHHHHHHHHcCCCc
Q 028466 155 AGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 155 ~~~~v~~~~~~l~~~~~~~~ 174 (208)
++.|++++++.|.+.+++.+
T Consensus 158 ~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBCC
T ss_pred CCCCHHHHHHHHHHhCCcCC
Confidence 99999999999999886543
No 145
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=148.47 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=109.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccc--eeeeeeeEEEEEECCeEEEEEEEecCCch-----------hhcc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRS 73 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~ 73 (208)
...++|+|+|.+|+|||||+|+|++..+.....+ +.+.+.....+.+++ ..+.||||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999888655544 455555556666666 468999999943 3444
Q ss_pred chhhhhccCCEEEEEEeCCChhh--HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC------HHHHHHHHHHcC
Q 028466 74 LIPSYIRDSSVAVIVYDVASRQS--FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS------IEEGEAKARELN 145 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~------~~~~~~~~~~~~ 145 (208)
....+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.+..... ...++.++...+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 45555678899999999975433 22222222222211 236899999999986544332 245777888888
Q ss_pred CeEEEeecCCC-----CCHHHHHHHHHHHcCC
Q 028466 146 VMFIETSAKAG-----FNIKALFRKIAAALPG 172 (208)
Q Consensus 146 ~~~~~~S~~~~-----~~v~~~~~~l~~~~~~ 172 (208)
..++.++...+ .++.+++..+.+++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877654 6899999998888743
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=3.2e-22 Score=150.52 Aligned_cols=167 Identities=9% Similarity=0.051 Sum_probs=108.7
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccce--eeeeeeEEEEEECCeEEEEEEEecCCc--------hhhcc
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRS 73 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~ 73 (208)
......++|+|+|.+|+|||||+|+|++.........+ .+..........++ ..+.||||||. +.+..
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHH
Confidence 34467899999999999999999999988775443333 33344445555665 57999999996 33333
Q ss_pred chhhhh----ccCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc------CHHHHHHHHH
Q 028466 74 LIPSYI----RDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV------SIEEGEAKAR 142 (208)
Q Consensus 74 ~~~~~~----~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------~~~~~~~~~~ 142 (208)
....++ +.+|++|+|+|+++....+ .+..++..+......+.|++|++||.|+.+.... ....++.+..
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 333333 8999999999998532221 1233333332221136899999999999543211 1134577777
Q ss_pred HcCCeEEEeecCC-----CCCHHHHHHHHHHHcCC
Q 028466 143 ELNVMFIETSAKA-----GFNIKALFRKIAAALPG 172 (208)
Q Consensus 143 ~~~~~~~~~S~~~-----~~~v~~~~~~l~~~~~~ 172 (208)
..+..++.++... +.|+.++++.|.+++.+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7788787777665 57999999999998864
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=2e-24 Score=177.37 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=117.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.++|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4689999999999999999999987776556666666665555544222 368999999999999999999999999999
Q ss_pred EEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHH---HHHc--CCeEEEeecCCCCCHHH
Q 028466 88 VYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAK---AREL--NVMFIETSAKAGFNIKA 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~S~~~~~~v~~ 161 (208)
|+|+++........ + +......+.|+++++||+|+.+..... ..+.... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e-~---l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVE-S---IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHH-H---HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHH-H---HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99999753333222 2 222223468999999999986432211 1111111 1111 24799999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028466 162 LFRKIAAALPGME 174 (208)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (208)
++++|...+....
T Consensus 158 Lle~I~~l~~~~~ 170 (537)
T 3izy_P 158 LAEATIALAEMLE 170 (537)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHhhhccc
Confidence 9999998875443
No 148
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.4e-21 Score=154.21 Aligned_cols=160 Identities=19% Similarity=0.123 Sum_probs=109.4
Q ss_pred cee-EEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCch---------hhccchhhh
Q 028466 9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY 78 (208)
Q Consensus 9 ~~~-i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 78 (208)
.++ |+|+|.+|+|||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|.- .|.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 99999999999999999998876544455666667777777877 468999999962 233332 35
Q ss_pred hccCCEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-CHHHHHHHHHHc---CCeEEEee
Q 028466 79 IRDSSVAVIVYDVASRQ--SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV-SIEEGEAKAREL---NVMFIETS 152 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S 152 (208)
+..+|++++|+|++++. ....+..|...+......+.|+++|.||+|+.+.... ....+..++..+ +..++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78999999999999876 4555555555555443357899999999998653210 012233334554 24789999
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028466 153 AKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 153 ~~~~~~v~~~~~~l~~~~~ 171 (208)
++++.|+++++++|.+.+.
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999998764
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=4e-22 Score=163.32 Aligned_cols=150 Identities=18% Similarity=0.269 Sum_probs=100.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC-------------------------------CCCCccceeeeeeeEEEEEECCe
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLEDR 56 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 56 (208)
..+||+++|.+++|||||+++|++.. ...+..+..+++.....+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 46999999999999999999997541 111222344444444444444
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHH------hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFL------NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.+.+.||||||++.|...+..++..+|++|+|+|++++.... +..+.+. +.... ...|++||+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~-~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL-GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT-TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc-CCCcEEEEEECcCcccch
Confidence 367999999999999999999999999999999999864321 2222222 22222 125699999999997644
Q ss_pred CcCHHHHHHHHH----Hc-----CCeEEEeecCCCCCHHH
Q 028466 131 QVSIEEGEAKAR----EL-----NVMFIETSAKAGFNIKA 161 (208)
Q Consensus 131 ~~~~~~~~~~~~----~~-----~~~~~~~S~~~~~~v~~ 161 (208)
+...+++...+. .+ +++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 333333333333 32 45799999999999874
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=7.6e-23 Score=165.92 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=106.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccch--------hhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 78 (208)
..++|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+.+++ ..+.+|||||+..+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999987543 33445666666666677777 568999999986654433 235
Q ss_pred hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 79 IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
+..+|++++|+|++++.+... ..++..+. ..|+++|+||+|+.+..... ..+.+. .+.+++++|++++.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999997655443 34444442 37999999999997654332 111111 346899999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028466 159 IKALFRKIAAALPGME 174 (208)
Q Consensus 159 v~~~~~~l~~~~~~~~ 174 (208)
+++++++|.+.+....
T Consensus 371 i~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 371 IDSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999986543
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=4.3e-23 Score=167.98 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=110.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCC--------chhhccchhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~ 77 (208)
|+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+..... .......+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 667899999999999999999999876642 22333343333333 333335799999999 6777888888
Q ss_pred hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC-CeEEEeecCCC
Q 028466 78 YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN-VMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~ 156 (208)
+++.+|++|+|+|+.+. +.....++..+... .++|+++|+||+|+.+... ....+. ..+ ...+++||.++
T Consensus 99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence 99999999999998753 33333444444332 4689999999999854321 111111 223 25689999999
Q ss_pred CCHHHHHHHHHHHcCCCccCCcccccccccccccCCCCC
Q 028466 157 FNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSNTN 195 (208)
Q Consensus 157 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
.|+.++++.+.+.+..............+.+-+.+..++
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGK 208 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK 208 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSH
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCH
Confidence 999999999998876543222222233344444444433
No 152
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=2.3e-21 Score=152.24 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=100.2
Q ss_pred EEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeE
Q 028466 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVII 117 (208)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~i 117 (208)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3444544 689999999999999999999999999999999998 457888888888887643 257999
Q ss_pred EEEEeCCCCcCcc---------------CcCHHHHHHHHH-----------HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 118 VLVGNKTDLVDKR---------------QVSIEEGEAKAR-----------ELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 118 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+|++||+|+.++. .....++..++. ..++.++++||+++.||+++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985332 356778888776 34678999999999999999999998874
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=1.1e-22 Score=164.59 Aligned_cols=155 Identities=16% Similarity=0.243 Sum_probs=103.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC--CCCC-----------------------------CccceeeeeeeEEEEEEC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (208)
..+.++|+++|+.++|||||+++|++. .+.. +..+..+++.....+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356799999999999999999999864 2221 112334444444444444
Q ss_pred CeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhh----cCCC-CeEEEEEeCCCCcCc
Q 028466 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----RGSD-VIIVLVGNKTDLVDK 129 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~-~~iivv~nK~D~~~~ 129 (208)
+ +.+.||||||+++|...+..++..+|++|+|+|+++ .+|+....|..+...+ ...+ .++++++||+|+.+.
T Consensus 83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 3 579999999999999999999999999999999998 5666332222111111 1123 458899999999652
Q ss_pred c------CcCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHHH
Q 028466 130 R------QVSIEEGEAKARELN-----VMFIETSAKAGFNIKALF 163 (208)
Q Consensus 130 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 163 (208)
. +....+++.++..++ ++++++||++|+|+.+++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1 112345666666665 679999999999997544
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.8e-21 Score=156.36 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=104.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCC---CCC------------------------------ccceeeeeeeEEEEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNT------------------------------YQATIGIDFLSKTMYL 53 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~ 53 (208)
...++|+++|+.++|||||+++|++... ... ..+.++++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999985531 000 0112333333333333
Q ss_pred CCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc-
Q 028466 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV- 132 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~- 132 (208)
.+ ..+.||||||++.|...+..++..+|++|+|+|++++. ..+..+++..+... + -.|+++|+||+|+.+..+.
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHH
Confidence 33 57999999999999999989999999999999998753 22333444433322 1 2468999999999753211
Q ss_pred ---CHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466 133 ---SIEEGEAKARELN-----VMFIETSAKAGFNIKAL 162 (208)
Q Consensus 133 ---~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 162 (208)
...++..++..++ ++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2345566666666 68999999999999873
No 155
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=3e-21 Score=149.58 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=99.1
Q ss_pred EEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhcC-CCCe
Q 028466 48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTERG-SDVI 116 (208)
Q Consensus 48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~ 116 (208)
...+..++ +.+.+||++|++.++..|..++++++++|+|+|++ +..++++...|+..+..... .+.|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 33444554 78999999999999999999999999999999665 56778888788887765432 6799
Q ss_pred EEEEEeCCCCcCcc----------------CcCHHHHHHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 117 IVLVGNKTDLVDKR----------------QVSIEEGEAKAR----------ELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 117 iivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++|++||+|+.+++ ....+++.+++. ..++.++++||+++.||+.+|+.+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999986533 456777777743 3456789999999999999999999988
Q ss_pred CC
Q 028466 171 PG 172 (208)
Q Consensus 171 ~~ 172 (208)
.+
T Consensus 317 l~ 318 (327)
T 3ohm_A 317 LQ 318 (327)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.9e-22 Score=142.74 Aligned_cols=116 Identities=18% Similarity=0.325 Sum_probs=89.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCC---CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhcc--
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-- 81 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 81 (208)
.+.++|+|+|.+|+|||||+++|.+..+.. ...++.+.++ ..+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 467899999999999999999999887643 2223332222 23568999999999998888877776
Q ss_pred --CCEEEEEEeCC-ChhhHHhHHHHHHHHHhhc----CCCCeEEEEEeCCCCcCccC
Q 028466 82 --SSVAVIVYDVA-SRQSFLNTTKWVEEVRTER----GSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 82 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~~ 131 (208)
+|++|+|+|++ +++++..+..|+..+.... ..+.|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 8899999888887776542 35799999999999976543
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=1.2e-21 Score=155.00 Aligned_cols=146 Identities=11% Similarity=0.050 Sum_probs=108.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEe
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|..++|||||+++|+ .+..+++.....+...+ +.+.||||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 33444444444444444 569999999999998888888999999999999
Q ss_pred CCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEe-CCCCcCccCcC--HHHHHHHHHHcC---CeEEE--eecCC---CCC
Q 028466 91 VASRQSFLNTTKWVEEVRTERGSDVII-VLVGN-KTDLVDKRQVS--IEEGEAKARELN---VMFIE--TSAKA---GFN 158 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~S~~~---~~~ 158 (208)
+. ..+.+..+++..+... +.|. ++++| |+|+ +..... ..+++.++..++ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3444555555554432 4666 88888 9999 432211 134455554443 68999 99999 999
Q ss_pred HHHHHHHHHHHcCC
Q 028466 159 IKALFRKIAAALPG 172 (208)
Q Consensus 159 v~~~~~~l~~~~~~ 172 (208)
++++++.|.+.++.
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=5.2e-21 Score=153.14 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC-------CCC---------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD-------KFD---------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
+.++|+++|+.++|||||+++|++. .+. .+.....+++... ..+......+.||||||++.|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~--~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAH--VEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEE--EEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeee--EEeccCCeEEEEEECCChHHH
Confidence 3589999999999999999999863 111 0112233333333 333333367999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC--
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN-- 145 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 145 (208)
...+..++..+|++|+|+|+++....+ ..+++..+.. .+.| +++++||+|+.+..+ ....+++.++..++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 988889999999999999998743222 2233333332 2577 788999999964211 11245566776665
Q ss_pred ---CeEEEeecCCCCC----------HHHHHHHHHHHcCC
Q 028466 146 ---VMFIETSAKAGFN----------IKALFRKIAAALPG 172 (208)
Q Consensus 146 ---~~~~~~S~~~~~~----------v~~~~~~l~~~~~~ 172 (208)
++++++||+++.| +.++++.|.+.++.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999764 89999999988764
No 159
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.7e-20 Score=152.03 Aligned_cols=161 Identities=22% Similarity=0.257 Sum_probs=108.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------ 74 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------ 74 (208)
..++|+|+|++|||||||+|+|++.... ....++.+.+.....+.+++. .+.+|||+|...+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987652 233455556666667777774 5889999997543221
Q ss_pred hhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHH-HH----cCCeEE
Q 028466 75 IPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKA-RE----LNVMFI 149 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~ 149 (208)
...+++.+|++++|+|++++.+.... ++...... .+.|+++|+||+|+.+.......+..... .. .+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 13467889999999999875444331 22222222 36899999999999765444344333222 22 257899
Q ss_pred EeecCCCCCHHHHHHHHHHHcCCCc
Q 028466 150 ETSAKAGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 150 ~~S~~~~~~v~~~~~~l~~~~~~~~ 174 (208)
++||++|.|++++|+.+.+.+....
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999998775443
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=4.6e-21 Score=159.63 Aligned_cols=158 Identities=21% Similarity=0.208 Sum_probs=107.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEEC----------------CeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 70 (208)
++.++|+|+|+.++|||||+++|++..+........+.+........+ .....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 466899999999999999999998765533221122222111111111 0112589999999999
Q ss_pred hccchhhhhccCCEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-------------H
Q 028466 71 FRSLIPSYIRDSSVAVIVYDVAS---RQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-------------I 134 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-------------~ 134 (208)
|..++.++++.+|++|+|+|+++ +++++.+.. +.. .+.|+++++||+|+....... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 555544332 222 468999999999996432110 0
Q ss_pred ----------HHHHHHHHHcC---------------CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 135 ----------EEGEAKARELN---------------VMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 135 ----------~~~~~~~~~~~---------------~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.+......+.+ ++++++||++|.|+++++++|...++
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 01112222222 37999999999999999999998764
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=1.9e-21 Score=156.11 Aligned_cols=160 Identities=20% Similarity=0.206 Sum_probs=114.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC--------CCCCC---------ccceeeeeeeEEEEEECCeEEEEEEEecCCch
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
...++|+++|+.++|||||+++|++. .+... ..+..+++.. ...+......+.||||||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~--~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTA--HVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCE--EEEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEee--eeEeccCCeEEEEEECCChH
Confidence 45799999999999999999999863 21110 1223333333 33333333679999999999
Q ss_pred hhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC
Q 028466 70 RFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 145 (208)
.|...+..++..+|++|+|+|++++. ..+..+++..+.. .+.| +++++||+|+.+..+ ....+++.++..++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998753 2334455554443 2577 889999999964211 11234556666665
Q ss_pred -----CeEEEeecCCCCC------------------HHHHHHHHHHHcCC
Q 028466 146 -----VMFIETSAKAGFN------------------IKALFRKIAAALPG 172 (208)
Q Consensus 146 -----~~~~~~S~~~~~~------------------v~~~~~~l~~~~~~ 172 (208)
++++++||+++.| +.++++.|.+.++.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 6899999999987 88899999887763
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=7.5e-21 Score=156.60 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=84.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC------------------CCCC----CccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+..+|+|+|++|+|||||+++|+.. .+.. +..++.++......+.+.+ +.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4689999999999999999999611 0100 1113334444444555555 67999999
Q ss_pred CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
||+..|...+..+++.+|++|+|+|++++........| ..+. ..++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999976555444433 2232 24689999999999854
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=1.4e-22 Score=165.12 Aligned_cols=155 Identities=18% Similarity=0.260 Sum_probs=91.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc--CCCC-----------------------------CCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------NTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|+.++|||||+++|+. +.+. .+....++++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3468999999999999999999974 2211 01123344444444455554
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCcc-
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKR- 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 130 (208)
..+.||||||++.|...+..++..+|++|+|+|+++. .+|+...++...+......++| ++|++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 5799999999999999999999999999999999975 2332211222222222223576 89999999995321
Q ss_pred -----CcCHHHHHHHHHHc-------CCeEEEeecCCCCCHHHHH
Q 028466 131 -----QVSIEEGEAKAREL-------NVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 131 -----~~~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~ 163 (208)
+....++..++... +++++++|+++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123456666655 3569999999999998754
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=2.7e-23 Score=169.33 Aligned_cols=157 Identities=21% Similarity=0.224 Sum_probs=110.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEE
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+..+|+++|+.++|||||+++|....+.....++++.+.....+.+++ ..++||||||++.|..++.+++..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987666544445555554444444444 46899999999999999999999999999
Q ss_pred EEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHH--HHHHHHHHcC--CeEEEeecCCCCCHH
Q 028466 87 IVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIE--EGEAKARELN--VMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~--~~~~~~~~~~--~~~~~~S~~~~~~v~ 160 (208)
+|+|+++.... +..+++..+. ..+.|+++++||+|+..... .... +...+...++ ++++++||++|.|++
T Consensus 80 LVVda~~g~~~-qT~e~l~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMP-QTIEAIQHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCT-TTHHHHHHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccH-HHHHHHHHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99999873211 1112222222 23689999999999964311 1000 0000111222 689999999999999
Q ss_pred HHHHHHHHH
Q 028466 161 ALFRKIAAA 169 (208)
Q Consensus 161 ~~~~~l~~~ 169 (208)
+++++|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998764
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-21 Score=163.36 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=104.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-------------------------------ccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|.+++|||||+++|++....-. ..++++++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 3478999999999999999999986532111 113445555555555544
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF---LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
+.+.||||||++.|...+..+++.+|++|+|+|++++. ++ .+....+..+. .. ...++|||+||+|+.+.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~l-gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SL-GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TT-TCCEEEEEEECTTTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-Hc-CCCeEEEEEecccccch
Confidence 57999999999999999999999999999999998642 11 11222222222 11 12459999999999763
Q ss_pred cCcCHH----HHHHHHHHc-----CCeEEEeecCCCCCHHHH
Q 028466 130 RQVSIE----EGEAKAREL-----NVMFIETSAKAGFNIKAL 162 (208)
Q Consensus 130 ~~~~~~----~~~~~~~~~-----~~~~~~~S~~~~~~v~~~ 162 (208)
.+.... ++..++... +++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 332222 333344433 358999999999999865
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.84 E-value=6.9e-22 Score=156.17 Aligned_cols=157 Identities=17% Similarity=0.276 Sum_probs=85.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCc-------hhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (208)
..++|+|+|++|+|||||+++|++.... ..+ .++.+++.....+..++..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999998765432 222 134444444444455566678999999998 556
Q ss_pred ccchh-------hhhccCC-------------EEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 72 RSLIP-------SYIRDSS-------------VAVIVYDVASRQSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 72 ~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
..++. .+++.++ +++++++.+ ..++..+. .++..+ ..++|+|+|+||+|+....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 66655 5555433 344444432 23444443 233322 3568999999999997654
Q ss_pred CcCH--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 131 QVSI--EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
++.. .++..++..++++++++|++++.+ ++.|.++.+.+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 4433 466677777789999999999988 66665555544
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=8.5e-22 Score=160.20 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=104.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC--CCCC-----------------------------CccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|..++|||||+++|++. .+.. +..+.++++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45799999999999999999999864 2211 0113344444444444444
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SFL---NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 128 (208)
+.+.||||||++.|...+..++..+|++|+|+|+++.. +|+ +..+++..+.. .+.| +++|+||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 67999999999999999999999999999999998642 221 22233322222 2454 899999999973
Q ss_pred ccC----cCHHHHHHHHHHcC-----CeEEEeecCCCCCHHHH
Q 028466 129 KRQ----VSIEEGEAKARELN-----VMFIETSAKAGFNIKAL 162 (208)
Q Consensus 129 ~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 162 (208)
..+ ....++..++..++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 221 12234555555554 68999999999998743
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=2.9e-20 Score=144.59 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=94.2
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhcC-CCCeEEEEEeCCC
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTERG-SDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D 125 (208)
.+.+.+||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+..... .++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 368999999999999999999999999999999998 67888888888888776543 6799999999999
Q ss_pred CcCcc---------------CcCHHHHHHHHHHc---------------------------CCeEEEeecCCCCCHHHHH
Q 028466 126 LVDKR---------------QVSIEEGEAKAREL---------------------------NVMFIETSAKAGFNIKALF 163 (208)
Q Consensus 126 ~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~S~~~~~~v~~~~ 163 (208)
+.+++ ....+++..++... .+.++++||+++.+|+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 85321 12345554444322 3678999999999999999
Q ss_pred HHHHHHcCC
Q 028466 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
+.+.+.+.+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998854
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=3.8e-22 Score=166.48 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=89.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-------------------------------CCCCCccceeeeeeeEEEEEECC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|++++|||||+++|++. .+..+..++++++.....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 34689999999999999999999632 1111223445555544444443
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh---hH--H-hHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ---SF--L-NTTKWVEEVRTERGSDVI-IVLVGNKTDLVD 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 128 (208)
...+.||||||++.|...+..++..+|++|+|+|++++. ++ . +....+..+.. .++| +|||+||+|+.+
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 367999999999999999999999999999999998532 22 1 22222222222 2455 899999999975
Q ss_pred ccCcCH----HHHHHHH-HHcCC-----eEEEeecCCCCCHH--------------HHHHHHHHHcC
Q 028466 129 KRQVSI----EEGEAKA-RELNV-----MFIETSAKAGFNIK--------------ALFRKIAAALP 171 (208)
Q Consensus 129 ~~~~~~----~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~~~ 171 (208)
..+... .++..++ ...++ +++++||++|.|+. .+++.|...++
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 322222 2333343 33343 69999999999998 78888877654
No 170
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=2.4e-20 Score=146.37 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=92.2
Q ss_pred eEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCC----------ChhhHHhHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 028466 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------SRQSFLNTTKWVEEVRTER-GSDVIIVLVGNKT 124 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~ 124 (208)
..+.+.+|||+|++.++..+..++++++++|+|||++ +..+++....|+..+.... ..+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5678999999999999999999999999999999998 7789999989988887643 3679999999999
Q ss_pred CCcCccC--c-------------------CHHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHH
Q 028466 125 DLVDKRQ--V-------------------SIEEGEAKARE----------------LNVMFIETSAKAGFNIKALFRKIA 167 (208)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~ 167 (208)
|+.+++. . ..+++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 13455555432 123568999999999999999999
Q ss_pred HHcC
Q 028466 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=2.1e-20 Score=162.93 Aligned_cols=162 Identities=16% Similarity=0.140 Sum_probs=111.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC-------CCC-------CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------FDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
...++|+++|+.++|||||+++|++.. +.. ..+...++++....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 100 111223333322233343344679999999999999
Q ss_pred cchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcCccC---cCHHHHHHHHHHcC---
Q 028466 73 SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVDKRQ---VSIEEGEAKARELN--- 145 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 145 (208)
.....++..+|++|+|+|+++.. +.+..+++..+... ++| +|+++||+|+.+..+ ....+++.++..++
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 99889999999999999998752 22344444444332 477 789999999964221 11245566666665
Q ss_pred --CeEEEeecCCC--------CCHHHHHHHHHHHcCC
Q 028466 146 --VMFIETSAKAG--------FNIKALFRKIAAALPG 172 (208)
Q Consensus 146 --~~~~~~S~~~~--------~~v~~~~~~l~~~~~~ 172 (208)
++++++||++| .|+.++++.|.+.++.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 58999999999 4689999999987753
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=7.2e-20 Score=134.14 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=100.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----------hccchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 76 (208)
.+..+|+|+|++|+|||||+++|.+..+.....++.+.......+.+++ .+.+|||||+.. +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4578999999999999999999998774333344444433333333333 478999999742 333333
Q ss_pred hhh---ccCCEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcC--Ce
Q 028466 77 SYI---RDSSVAVIVYDVASRQSFLN--TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELN--VM 147 (208)
Q Consensus 77 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 147 (208)
.++ ..++++++++|++++.+... +..|+ .. .+.|+++|.||+|+.+..+ .....+..++.+.+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 444 46899999999987544322 22222 12 3588899999999865322 11345555555554 57
Q ss_pred EEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 148 FIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 148 ~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
++++|++++.|+++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998754
No 173
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=1.2e-19 Score=143.99 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=96.2
Q ss_pred EEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeEE
Q 028466 50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVIIV 118 (208)
Q Consensus 50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~ii 118 (208)
.+.+++ +.+.+|||+|++.++..+..++++++++|+|||+++ ..+++....|+..+.... ..+.|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344444 689999999999999999999999999999999998 789999999999887653 3679999
Q ss_pred EEEeCCCCcCccC---c---------------------------CHHHHHHHH-----HH--------cCCeEEEeecCC
Q 028466 119 LVGNKTDLVDKRQ---V---------------------------SIEEGEAKA-----RE--------LNVMFIETSAKA 155 (208)
Q Consensus 119 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~ 155 (208)
||+||+|+...+. . ...++..++ .. ..+.++++||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999854321 1 134455543 22 245678999999
Q ss_pred CCCHHHHHHHHHHHcC
Q 028466 156 GFNIKALFRKIAAALP 171 (208)
Q Consensus 156 ~~~v~~~~~~l~~~~~ 171 (208)
+.||+++|.++.+.+.
T Consensus 369 ~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988774
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3.6e-19 Score=134.97 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=87.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhc-----
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR----- 80 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 80 (208)
++.++|+|+|..|+|||||+|+|++..+. ....+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 57899999999999999999999988753 22233334444455556666 47999999999887766555543
Q ss_pred ----cCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccCc
Q 028466 81 ----DSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQV 132 (208)
Q Consensus 81 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~ 132 (208)
.+|++++|++++... +.. ...|+..+....+.+ .|+++|+||+|+.+....
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 789999999987643 333 345666666554433 489999999998644333
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=1.5e-20 Score=145.03 Aligned_cols=160 Identities=20% Similarity=0.232 Sum_probs=101.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCC------cccee----------------------eee-------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQATI----------------------GID------------- 45 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~------~~~~~----------------------~~~------------- 45 (208)
...++|+|+|.+|+|||||+|+|++..+.+. +.++. +.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999998877421 11220 000
Q ss_pred --------eeEEEEEE-CCeEEEEEEEecCCch-------------hhccchhhhhccCCEEE-EEEeCCChhhHHhHHH
Q 028466 46 --------FLSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-IVYDVASRQSFLNTTK 102 (208)
Q Consensus 46 --------~~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 102 (208)
.....+.+ ......+.||||||.. .+...+..+++.++.+| +|+|+++.........
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000000 0012479999999964 34556777888888776 6999986433322223
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHc--C-CeEEEeecCCCCCHHHHHHHHHHH
Q 028466 103 WVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAREL--N-VMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 103 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
++..+. ..+.|+++|+||+|+.+........++...... + ..++++||+++.|+++++++|.+.
T Consensus 184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 333332 246899999999999754432222222111111 2 367899999999999999998874
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=7.6e-19 Score=148.60 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=82.1
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhcCCCCCC-------------c-----cceeeeeeeEEEEEECCeEEEEEE
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------Y-----QATIGIDFLSKTMYLEDRTVRLQL 62 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~i 62 (208)
|......+..+|+|+|+.|+|||||+++|++...... . ....++......+... .+.+++
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nl 78 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFL 78 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEE
Confidence 4444445678999999999999999999984322100 0 1122333333333344 368999
Q ss_pred EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
|||||+..|...+..+++.+|++++|+|+++.-... ...++..+.. .+.|+++|+||+|+.
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 999999999999999999999999999987642222 2334444433 358999999999985
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=8.9e-18 Score=138.45 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=78.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC--CC----------------C----CccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FD----------------N----TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~--~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+..+|+|+|++|+|||||+++|+... .. + +..+..++......+.+.+ +.+.||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 57899999999999999999998531 10 0 0011222222233344444 67999999
Q ss_pred CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
||+..|...+..+++.+|++|+|+|+++.... ....++..+. ..+.|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 99999999899999999999999999864221 1222222222 24689999999999854
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=2.4e-18 Score=137.58 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchh----hccchh---hhhccC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIP---SYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~ 82 (208)
-.|+|+|++|+|||||++++.+........+..+.......+..++ ...+.+||+||... +..+.. ..+..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999987643211112222222233344443 23689999999742 111222 234579
Q ss_pred CEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 83 SVAVIVYDVASRQSFLNTTKWVEEVRTERG--SDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
+.+++++|++ ...+..+..+...+..... ...|.++|+||+|+... ....++...+...+..++.+||++++|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999997 4556666665555544321 24788888999998653 22344555556667899999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028466 161 ALFRKIAAALPGMET 175 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (208)
+++++|.+.+.+.+.
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876544
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=8.4e-18 Score=142.74 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=82.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC--CC------CC----------CccceeeeeeeEEEEEECCeEEEEEEEecCCc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+..+|+|+|+.|+|||||+++|+.. .+ .. +.....++......+.+.+ +.++||||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 46789999999999999999999832 11 00 0122333333344445554 67999999999
Q ss_pred hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 69 ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
..|...+..+++.+|++|+|+|+++.........|.. +.. .+.|+++|+||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999999999999998666655554443 322 3689999999999854
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=6.5e-18 Score=128.59 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=82.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCC-CccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchh-------hh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY 78 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~ 78 (208)
.+.++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+..++ ..+.||||||+..+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 357999999999999999999999877632 2222333333333344444 6799999999876654322 11
Q ss_pred --hccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCC--CeEEEEEeCCCCcCccC
Q 028466 79 --IRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSD--VIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 79 --~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~ 131 (208)
.+.+|++++|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+.+...
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 3479999999998653 3333 246666666554433 68999999999965443
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=3.1e-19 Score=137.73 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=86.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC-CCCCCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCc-------hh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD-KFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 70 (208)
.-.++|+|+|++|+|||||+++|.+. .++... .++.........+...+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998875 343322 112222222222222344468999999998 44
Q ss_pred hccchh-------hhhcc-------------CCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 71 FRSLIP-------SYIRD-------------SSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 71 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
+..... .+++. +++++++.+.+. .+++.... ..+... ....++++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 554443 44333 234555555432 12333221 222222 2457899999999996543
Q ss_pred Cc--CHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 131 QV--SIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+. ...++.+++..+++.++++|++++ +++++|..+.+.+.+
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 32 245778888899999999999999 999999999988754
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.2e-18 Score=132.95 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=100.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc------cceeeeeeeE--------------------------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGIDFLS-------------------------------- 48 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~-------------------------------- 48 (208)
....+|+|+|.+|+|||||+|+|++..+.+.. .++.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999988762211 1110000000
Q ss_pred -------------------EEEE-ECCeEEEEEEEecCCchh-------------hccchhhhhccCCEEEEEEeCCChh
Q 028466 49 -------------------KTMY-LEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDVASRQ 95 (208)
Q Consensus 49 -------------------~~~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 95 (208)
..+. .......+.||||||... +......++..+|++|+|+|+.+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0000 111124699999999753 4556677899999999999974322
Q ss_pred hH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC---C---CCCHHHHHHHHHH
Q 028466 96 SF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK---A---GFNIKALFRKIAA 168 (208)
Q Consensus 96 s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~v~~~~~~l~~ 168 (208)
.. .....+...+ ...+.|+++|+||+|+.+........++.....++..++++++. + +.|+.++++.+.+
T Consensus 182 ~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 182 LANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp STTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 11 1111222222 22468999999999997554322322221111222556666654 4 7899999999998
Q ss_pred HcCCCc
Q 028466 169 ALPGME 174 (208)
Q Consensus 169 ~~~~~~ 174 (208)
.+...+
T Consensus 259 ~~~~~~ 264 (315)
T 1jwy_B 259 YFKNHP 264 (315)
T ss_dssp HHHTCT
T ss_pred HHhCCC
Confidence 886543
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=6.6e-18 Score=143.46 Aligned_cols=161 Identities=13% Similarity=0.187 Sum_probs=105.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCC-Ccccee--------------eeee--------------------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATI--------------GIDF-------------------------- 46 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~-~~~~~~--------------~~~~-------------------------- 46 (208)
..++|+|+|.+|+|||||+|+|++..+.. ...++. ++.+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999877532 222222 1100
Q ss_pred -------------eEEEEEECCeE--EEEEEEecCCchh---hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHH
Q 028466 47 -------------LSKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVR 108 (208)
Q Consensus 47 -------------~~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 108 (208)
....+.+.... ..+.||||||... ....+..+++.+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111000 2589999999765 34456678899999999999998766666555543332
Q ss_pred hhcCCCCeEEEEEeCCCCcCccCcCH------H----HHHHH----HHH---------cCCeEEEeecC-----------
Q 028466 109 TERGSDVIIVLVGNKTDLVDKRQVSI------E----EGEAK----ARE---------LNVMFIETSAK----------- 154 (208)
Q Consensus 109 ~~~~~~~~iivv~nK~D~~~~~~~~~------~----~~~~~----~~~---------~~~~~~~~S~~----------- 154 (208)
. .+.|+++|+||+|+........ . .+... ... ....++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 3578999999999864431111 0 11111 111 12368999999
Q ss_pred ---CCCCHHHHHHHHHHHcC
Q 028466 155 ---AGFNIKALFRKIAAALP 171 (208)
Q Consensus 155 ---~~~~v~~~~~~l~~~~~ 171 (208)
++.|++++++.|.+.+.
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHH
Confidence 99999999999998774
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=3e-19 Score=142.47 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=47.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEE---------------------EECC-eEEEEEEEecCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM---------------------YLED-RTVRLQLWDTAG 67 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~i~D~~G 67 (208)
++|+|+|.+|||||||+|+|++........+..+++...... .+++ ...++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999877432223333322222211 1222 246899999999
Q ss_pred chhh----ccch---hhhhccCCEEEEEEeCCCh
Q 028466 68 QERF----RSLI---PSYIRDSSVAVIVYDVASR 94 (208)
Q Consensus 68 ~~~~----~~~~---~~~~~~~d~~i~v~d~~~~ 94 (208)
+... ..+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 2222 2457899999999999864
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.76 E-value=3.7e-17 Score=138.89 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=83.4
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhc--CCCCC----------------CccceeeeeeeEEEEEECCeEEEEEEEecCC
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
..+..+|+|+|.+|+|||||+++|+. +.+.. +..+..++......+.+.+ +.++||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35678999999999999999999984 22110 0012333333344455554 6799999999
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
+..|...+..+++.+|++|+|+|+++..+......|.. +.. .+.|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 99999999999999999999999997655554444432 332 3689999999999854
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=4.4e-17 Score=138.55 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=83.2
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhhcC--CCCC----------------CccceeeeeeeEEEEEECC-----eEEEEEE
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN----------------TYQATIGIDFLSKTMYLED-----RTVRLQL 62 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~i 62 (208)
..+..+|+|+|+.|+|||||+++|+.. .+.. +..+..++......+.+.+ ..+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 356789999999999999999999742 1110 0012233333333333332 3378999
Q ss_pred EecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
|||||+.+|...+..+++.+|++|+|+|+++.........| ..+. ..+.|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence 99999999999999999999999999999975443333333 2222 24689999999999853
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=5.9e-19 Score=139.61 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=102.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeee---e--------------------------------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---F-------------------------------------- 46 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~---~-------------------------------------- 46 (208)
.-.+|+|+|.+|+|||||+|+|++..+.+......+.. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999987633222111100 0
Q ss_pred -----------eEEEEEE-CCeEEEEEEEecCCchhh-------------ccchhhhhccCCEEEEEEeCCChhhHHhHH
Q 028466 47 -----------LSKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDVASRQSFLNTT 101 (208)
Q Consensus 47 -----------~~~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (208)
....+.+ ......+.+|||||...+ ......+++++|++|+|+|..+.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000000 011235899999998765 556778899999999999876433222 2
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q 028466 102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRK 165 (208)
Q Consensus 102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 165 (208)
.|+..+......+.|+++|+||+|+.+........+......++..|+.+++.++.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 3344444444456899999999999765554444444444556778999999998877765443
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=136.84 Aligned_cols=161 Identities=16% Similarity=0.230 Sum_probs=82.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc--------cceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-----
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 73 (208)
.-.++|+|+|++|+|||||+++|++..+.... .++.........+...+....+++||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999987663211 11222222222222233334789999999765311
Q ss_pred --------------------chhhhhccCCEEEEEEeCCCh-hhHHhHH-HHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 74 --------------------LIPSYIRDSSVAVIVYDVASR-QSFLNTT-KWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 74 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+...++.++++.+++|..... .++.... .|+..+. .++|+|+|+||+|+....+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 112234455544444444321 2343332 4555443 3689999999999876544
Q ss_pred cCH--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 132 VSI--EEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+.. .++...+..+++.++++|+.++.++.++|..|...++
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 433 5777888888999999999999999998888887664
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=1.3e-18 Score=134.28 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=109.7
Q ss_pred HHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChh-hHHhHH
Q 028466 24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTT 101 (208)
Q Consensus 24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 101 (208)
+|+.+++.+.|. ..+.+|++..+. ..+..++ .+.+||+ ++.|..++..+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688889988888 788899884443 3322222 6899999 8999999999999999999999999987 688889
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHHH
Q 028466 102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELN--VMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
.|+..+.. .++|+++|+||+|+.+..++ .+...++..++ +.++++||+++.|++++|..+...
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 99887654 36899999999999654332 45667777777 899999999999999999987654
No 190
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.74 E-value=1.2e-17 Score=131.56 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=92.4
Q ss_pred EEEEECCeEEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCC----------hhhHHhHHHHHHHHHhhc-CCCCeE
Q 028466 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAS----------RQSFLNTTKWVEEVRTER-GSDVII 117 (208)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~i 117 (208)
..+.+++ +.+.+|||+|++.++..+..++++++++|+|+|+++ ..++.....|+..+.... ..+.|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 4455554 789999999999999999999999999999999998 678999888888887643 367999
Q ss_pred EEEEeCCCCcCcc----------------CcCHHHHHHHHH-----------HcCCeEEEeecCCCCCHHHHHHHHHHHc
Q 028466 118 VLVGNKTDLVDKR----------------QVSIEEGEAKAR-----------ELNVMFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 118 ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
||++||+|+.++. .....++..++. ..++.++++||+++.||+++|+++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999986322 255667776652 3357889999999999999999999887
Q ss_pred C
Q 028466 171 P 171 (208)
Q Consensus 171 ~ 171 (208)
.
T Consensus 352 ~ 352 (362)
T 1zcb_A 352 L 352 (362)
T ss_dssp H
T ss_pred H
Confidence 4
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=6.1e-16 Score=128.05 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=81.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC------------------CC----CCCccceeeeeeeEEEEEECCeEEEEEEEec
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+.-+|+|+|+.++|||||.++|+.. .+ ..+..+.+++.-....+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 5678999999999999999998611 11 223445555555666667766 67999999
Q ss_pred CCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 66 AGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
|||.+|...+.+.++-+|++|+|+|+...=......-| ..+.. .++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 99999999999999999999999999854222222223 33332 3699999999999843
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=5.9e-17 Score=119.53 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=95.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee------------EEEEEECC------------------eE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLED------------------RT 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~ 57 (208)
+..+|+|+|.+|+|||||+++|...............+.. .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3578999999999999999999865221111111110100 00011111 12
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.+|||+|+-... ..+....+.+++|+|+.+... ....+... .+.|+++|+||+|+.+.......++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 468899999851100 011135688999999875421 11111111 1367889999999865433456666
Q ss_pred HHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHHcCCC
Q 028466 138 EAKAREL--NVMFIETSAKAGFNIKALFRKIAAALPGM 173 (208)
Q Consensus 138 ~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~~~~~ 173 (208)
...+... +++++++|++++.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 6666654 47899999999999999999999987543
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1e-15 Score=120.08 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=91.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeE---------------EEEEEEecCCchhhc--
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFR-- 72 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~-- 72 (208)
++|+|+|.+|+|||||+|+|++..+.....+..+++.....+.+.+.. ..+.+|||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 789999999999999999999877533333333333333334444321 469999999987643
Q ss_pred -----cchhhhhccCCEEEEEEeCCCh----------hhHHhHHHHHHH-------------------------------
Q 028466 73 -----SLIPSYIRDSSVAVIVYDVASR----------QSFLNTTKWVEE------------------------------- 106 (208)
Q Consensus 73 -----~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 106 (208)
.....+++.+|++++|+|+++. +.+..+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2234458999999999999852 122221111000
Q ss_pred ---------HH-------------------hhc-CCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEeecC
Q 028466 107 ---------VR-------------------TER-GSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 107 ---------~~-------------------~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 154 (208)
+. .+. ...+|+++++|+.|..-........++.++...++.++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 00 011 1348999999999963212233567778888889999999965
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=1.7e-17 Score=130.82 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=94.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCc------cceeee--------------------ee--------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGI--------------------DF-------------- 46 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~------~~~~~~--------------------~~-------------- 46 (208)
...++|+|+|.+|+|||||+|+|++..+.+.. .++... ++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999988763211 122100 00
Q ss_pred ---------eEEEEEE-CCeEEEEEEEecCCch-------------hhccchhhhhccCC-EEEEEEeCCChhhHHhHHH
Q 028466 47 ---------LSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSS-VAVIVYDVASRQSFLNTTK 102 (208)
Q Consensus 47 ---------~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 102 (208)
....+.+ ......+.||||||.. .+..+...|+...+ ++++|.+++.. +... .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence 0000111 0112469999999963 34456667776665 55556676542 2221 1
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHH
Q 028466 103 WVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE--LN-VMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 103 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
+...+......+.|+++|+||.|+.+........++..... .+ ..++++||+++.|++++++.+.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222223335689999999999975433222221110001 12 35788999999999999999876
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.64 E-value=5e-16 Score=134.43 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=84.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCC------------CC----CCccceeeeeeeEEEEEE--------------CCe
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDK------------FD----NTYQATIGIDFLSKTMYL--------------EDR 56 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~~ 56 (208)
.+..+|+|+|+.++|||||+++|+... +. .+..+.+++......+.+ ++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998531 11 111222232222222222 334
Q ss_pred EEEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
.+.++||||||+.+|...+..+++.+|++|+|+|++++.++.....|..... .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 6889999999999999999999999999999999998766666554543322 368999999999985
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=3e-16 Score=129.99 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=80.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCC---CCccceeeeeeeEEE-----EEECC----------------------e
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----MYLED----------------------R 56 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~----------------------~ 56 (208)
...++|+|+|.+|+|||||+|+|++..+. ....++.+....... +..+. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45789999999999999999999998763 222222211000000 00000 0
Q ss_pred -E---------EEEEEEecCCchh-----------hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 028466 57 -T---------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDV 115 (208)
Q Consensus 57 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 115 (208)
. ..+.||||||... |...+..++..+|++|+|+|+++.........++..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 0 2589999999864 445667788999999999999875444445555555432 357
Q ss_pred eEEEEEeCCCCcCc
Q 028466 116 IIVLVGNKTDLVDK 129 (208)
Q Consensus 116 ~iivv~nK~D~~~~ 129 (208)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 89999999999754
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=8.4e-18 Score=124.54 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=93.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeee------------EEEEEEC-CeE-----------------
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DRT----------------- 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 57 (208)
+.++|+|+|.+|||||||+++|+...+...+.++...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999977654444444443332 1222222 110
Q ss_pred --EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHH
Q 028466 58 --VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIE 135 (208)
Q Consensus 58 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 135 (208)
..+.++|++|.-... ..+-...+..+.+.|+........ .... . ...|.++|+||+|+.+..+....
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~-~-----~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPG-I-----MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHH-H-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhh-H-----hhcCCEEEEeccccCchhHHHHH
Confidence 135555665521000 011122345566777532111110 0011 1 13677999999999654445566
Q ss_pred HHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 136 EGEAKAREL--NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 136 ~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+...++..+ +++++++||+++.|++++|++|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 777777765 578999999999999999999988763
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.63 E-value=3.1e-16 Score=123.68 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=69.5
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--HH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS--IE 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~ 135 (208)
+.+.||||||... .....+..+|++++|+|+...+....+.. .+ .+.|+++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5799999999543 22334688999999999876543322221 01 236889999999985432211 11
Q ss_pred HHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 136 EGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
+........ +.+++++||+++.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222222212 4789999999999999999999988754
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.2e-14 Score=112.21 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=104.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh-------ccchhhhhcc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 81 (208)
..+|+|+|.||||||||+|+|++........+..|++.....+.+.+ .++.++||||.-.- .......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998776555567777888888888887 56899999995321 1223445789
Q ss_pred CCEEEEEEeCCChhh-HHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC--------ccCcCHHHHHHHHHHcCCeEEEee
Q 028466 82 SSVAVIVYDVASRQS-FLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD--------KRQVSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~S 152 (208)
+|++++|+|+++|-. .+.+...+..+... ....|.++++||.|... ......++++.....+.+..-++-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 999999999998632 22233333222211 13467778889999632 234556777777777765433444
Q ss_pred cCCCCCHHHHHHHH
Q 028466 153 AKAGFNIKALFRKI 166 (208)
Q Consensus 153 ~~~~~~v~~~~~~l 166 (208)
...+...+++.+.+
T Consensus 229 ~~~nv~eddl~d~~ 242 (376)
T 4a9a_A 229 FRCDATVDDLIDVL 242 (376)
T ss_dssp ECSCCCHHHHHHHH
T ss_pred ecccCCHHHHHHHH
Confidence 44455555555433
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=7.2e-16 Score=121.23 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=62.1
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 46899999996422 2334678999999999986533221111 11 13577888899998532111 0011
Q ss_pred HHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 138 EAKAR----------ELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+.. ..+.+++.+|++++.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11111 12457899999999999999999998764
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.58 E-value=8.2e-16 Score=129.58 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=106.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc--CC------C----------CCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY--DK------F----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.+|+|+|+.++|||||.++|+. +. . ..+..+.+++.-....+.+++ +.++|+|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 5799999999999999999862 11 1 111222344443334444444 67999999999999
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc------------------
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV------------------ 132 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------------ 132 (208)
...+.+.++-+|++|+|+|+... .+. .+..+..+..+ ++|.++++||+|....+..
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~G--V~~qT~~v~~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~ 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDG--VQAQTRILFHALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCT--TCSHHHHHHHHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCC--CcHHHHHHHHHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999853 322 22333333333 4888899999997432100
Q ss_pred --------------CHHHH-----------H-------------------HHHHHcCCeEEEeecCCCCCHHHHHHHHHH
Q 028466 133 --------------SIEEG-----------E-------------------AKARELNVMFIETSAKAGFNIKALFRKIAA 168 (208)
Q Consensus 133 --------------~~~~~-----------~-------------------~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 168 (208)
..... . .+....-.+++..||+++.|++.+++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~ 235 (638)
T 3j25_A 156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN 235 (638)
T ss_dssp CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence 00000 0 000111246788899999999999999999
Q ss_pred HcCCCcc
Q 028466 169 ALPGMET 175 (208)
Q Consensus 169 ~~~~~~~ 175 (208)
.++....
T Consensus 236 ~~p~p~~ 242 (638)
T 3j25_A 236 KFYSSTH 242 (638)
T ss_dssp SCCCSGG
T ss_pred cccCccc
Confidence 8875543
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=3.1e-14 Score=112.22 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECC-------------------eEEEEEEEecCCchh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 70 (208)
++|+|+|.+|+|||||+|+|++........+..+++.......+.. ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999987643211112112211111122211 124699999999875
Q ss_pred hc-------cchhhhhccCCEEEEEEeCCC
Q 028466 71 FR-------SLIPSYIRDSSVAVIVYDVAS 93 (208)
Q Consensus 71 ~~-------~~~~~~~~~~d~~i~v~d~~~ 93 (208)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 123345799999999999985
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=8.8e-14 Score=118.69 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=78.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC--------C------C----CCCccceeeeeeeEEEEEECC-----eEEEEEEEe
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD--------K------F----DNTYQATIGIDFLSKTMYLED-----RTVRLQLWD 64 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~--------~------~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D 64 (208)
+--+|+|+|+.++|||||.++|+.. . + ..+..+.+++.-....+.+.+ ..+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4468999999999999999998611 1 1 123344555555555555542 357899999
Q ss_pred cCCchhhccchhhhhccCCEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 028466 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLN-TTKWVEEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~ 127 (208)
||||.+|...+.+.++-+|++|+|+|+... ... .+..+..+.. .+.|.++++||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveG--V~~qT~~v~~~a~~---~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSG--VEPQSETVWRQANK---YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTC--SCHHHHHHHHHHHH---HTCCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCC--CchhHHHHHHHHHH---cCCCeEEEEcccccc
Confidence 999999999999999999999999999843 322 2233333333 258999999999974
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=6.6e-15 Score=115.50 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=65.6
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCH--H
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSI--E 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~ 135 (208)
+.+.||||||....... ....+|++++|+|++....+..+.. .. .+.|.++|+||+|+........ .
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 57999999997654432 4689999999999975533221111 01 1356788999999864321111 1
Q ss_pred HHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 136 EGEAKAREL-------NVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
+.+.....+ ...++++||+++.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222222 357899999999999999999998764
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=9.6e-15 Score=110.39 Aligned_cols=109 Identities=17% Similarity=0.055 Sum_probs=68.3
Q ss_pred EEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcC
Q 028466 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVD 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 128 (208)
+.+.||||||...+..... ..+.. +++|+++|+... ..+.....+..... ...+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence 4799999999876543221 24456 899999987532 22222211111111 112588999999999864
Q ss_pred ccCcCHHHHHH----------------------------HHHHcC--CeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 129 KRQVSIEEGEA----------------------------KARELN--VMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+. .++.. .+.+++ .+++++|++++.|+++++++|.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 3221 11111 123333 47999999999999999999998764
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=2.2e-14 Score=121.79 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=96.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceee-------------------------------------------
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG------------------------------------------- 43 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~------------------------------------------- 43 (208)
....+|+|+|.+++|||||+|+|++..+.+......|
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999998776221110000
Q ss_pred --------eeeeEEEEEECCeEEEEEEEecCCchh-------------hccchhhhh-ccCCEEEEEEeCCChhhHHhHH
Q 028466 44 --------IDFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVIVYDVASRQSFLNTT 101 (208)
Q Consensus 44 --------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 101 (208)
.+.....+...+ ...+.|+||||... +......|+ ..+|++++|+|++.+.......
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000011111111 12588999999543 223444444 5789999999998642222222
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHHH
Q 028466 102 KWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE--LN-VMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 102 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
.++..+. ..+.|+++|+||.|+.+............... .+ ..++.+||+++.|++++++.|.+.
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2233332 34689999999999975543322211100000 12 367889999999999999999873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=5.4e-13 Score=102.86 Aligned_cols=99 Identities=21% Similarity=0.181 Sum_probs=80.5
Q ss_pred chhhccchhhhhccCCEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHcC
Q 028466 68 QERFRSLIPSYIRDSSVAVIVYDVASRQ-SFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKARELN 145 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (208)
++.+..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..+.. ..+...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6778888888999999999999999886 88888888886654 468999999999996543222 345566667778
Q ss_pred CeEEEeecCCCCCHHHHHHHHHHH
Q 028466 146 VMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 146 ~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
+.++++||+++.|++++++.+...
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHhhccCc
Confidence 999999999999999999887654
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=6e-14 Score=109.74 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=62.7
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.|+||+|..... ......+|++++|+|+...+....+... +. ..+.++++||.|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 579999999975322 2335789999999998654322111111 11 134466679999743222111112
Q ss_pred HHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 138 EAKARE----------LNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
..+... .+.+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222211 1457899999999999999999998764
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=105.74 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=52.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCchhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 72 (208)
..++|+|+|.+|+|||||+|+|++..+.....++.|++.....+.+.+. ...+.+|||||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999999999999988765444555555555555554432 1259999999987644
Q ss_pred c-------chhhhhccCCEEEEEEeCCChh
Q 028466 73 S-------LIPSYIRDSSVAVIVYDVASRQ 95 (208)
Q Consensus 73 ~-------~~~~~~~~~d~~i~v~d~~~~~ 95 (208)
. .+..+++.+|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 4566789999999999998543
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=2.3e-11 Score=96.52 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=62.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCC-CCCccceeeeeeeEEEEEECCe---------------EEEEEEEecCCchh-
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER- 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 70 (208)
+..++.|+|++|+|||||+|.|++... .....++.+++.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999998776 4445565555555555555541 13589999999543
Q ss_pred ------hccchhhhhccCCEEEEEEeCCC
Q 028466 71 ------FRSLIPSYIRDSSVAVIVYDVAS 93 (208)
Q Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~~ 93 (208)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23344556789999999999863
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.29 E-value=3e-12 Score=92.06 Aligned_cols=105 Identities=7% Similarity=-0.074 Sum_probs=68.5
Q ss_pred cCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHH---HHHHhhc--CCCCeEEEEEeCC-CCcCccCcCHHHHH
Q 028466 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWV---EEVRTER--GSDVIIVLVGNKT-DLVDKRQVSIEEGE 138 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~~iivv~nK~-D~~~~~~~~~~~~~ 138 (208)
.+|+..++.+|..|+.++|++|||+|.+|.+.++ ....+ ..+.... ..+.|++|++||. |+... +...++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHH
Confidence 4488899999999999999999999999875433 33333 2222222 2578999999995 66433 3344443
Q ss_pred HHHHH----cCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 139 AKARE----LNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 139 ~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
....- ....+..|||.+|+|+.+.++||.+.+..
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 33221 23468999999999999999999988743
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.14 E-value=9.4e-11 Score=88.31 Aligned_cols=105 Identities=7% Similarity=-0.078 Sum_probs=73.1
Q ss_pred cCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHH---HHH-hhc-CCCCeEEEEEeC-CCCcCccCcCHHHHH
Q 028466 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVE---EVR-TER-GSDVIIVLVGNK-TDLVDKRQVSIEEGE 138 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~ 138 (208)
.+|++..+..|..|+.++|++|||+|.+|.+.++ ....+. .+. ... ..+.|++|++|| .|+... +...++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence 4678899999999999999999999999876543 222221 222 221 257899999997 577543 3344433
Q ss_pred HHHHH----cCCeEEEeecCCCCCHHHHHHHHHHHcCC
Q 028466 139 AKARE----LNVMFIETSAKAGFNIKALFRKIAAALPG 172 (208)
Q Consensus 139 ~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~~~~~ 172 (208)
....- ....+..+||.+|+|+.+.++||.+.+..
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 33221 23468999999999999999999998853
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=4.7e-10 Score=88.68 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=73.0
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH----HHHH
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE----AKAR 142 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~----~~~~ 142 (208)
..+.|...+..+.+.+|++++|+|++++. ..|...+.... .+.|+++|+||+|+.+.. ....+.. ..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788899999999999999999999853 34444444443 368999999999996543 2233333 3356
Q ss_pred HcCC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466 143 ELNV---MFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
..+. .++.+||+++.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6676 799999999999999999998765
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=8.5e-10 Score=88.18 Aligned_cols=140 Identities=14% Similarity=0.211 Sum_probs=70.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCc----cceeeeeeeEEEEEECCeEEEEEEEecCCchhhc-------------
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------------- 72 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------- 72 (208)
++++|+|++|+|||||++.|.+..+.... .+..........+...+-...++++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999877542211 1222222111222222222368999999854210
Q ss_pred -cch----hhh---------hccC--CE-EEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC--
Q 028466 73 -SLI----PSY---------IRDS--SV-AVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-- 133 (208)
Q Consensus 73 -~~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-- 133 (208)
..+ ..+ +..+ |+ ++|+.|+..+ +.... +..+... ..++|+|+|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~D--ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLD--LVTMKKL-DSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHH--HHHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHH--HHHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence 011 111 1122 33 5556666532 22221 1112222 2578999999999986543321
Q ss_pred HHHHHHHHHHcCCeEEEeecC
Q 028466 134 IEEGEAKARELNVMFIETSAK 154 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~S~~ 154 (208)
...+.......++.++.+|..
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 222333334457888888854
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.02 E-value=3.6e-11 Score=95.13 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=83.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC------CCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhcc-------ch
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI 75 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~ 75 (208)
..+++++|.+|+|||||+|+|++. .......+..+.+ ...+.+.. .+.++||||...... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999875 2222223333332 22333333 278999999643221 11
Q ss_pred hhhh---ccCCEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEE
Q 028466 76 PSYI---RDSSVAVIVYDVASR---QSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFI 149 (208)
Q Consensus 76 ~~~~---~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
...+ +..|.+++++++... ..+.. +......+.|+++++||.|.....+. ......+.+..+..+.
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~ 308 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLS 308 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccC
Confidence 1222 678999999998421 11111 11223356899999999998654333 3344455556677666
Q ss_pred EeecCCCCCH
Q 028466 150 ETSAKAGFNI 159 (208)
Q Consensus 150 ~~S~~~~~~v 159 (208)
+.++.+.+++
T Consensus 309 p~~~~~~~~~ 318 (369)
T 3ec1_A 309 PPSKRYAAEF 318 (369)
T ss_dssp SSCGGGTTTC
T ss_pred CCCchhhhhc
Confidence 6666554443
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=6.9e-10 Score=90.75 Aligned_cols=151 Identities=18% Similarity=0.183 Sum_probs=83.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh------cCCCC----CCcccee-----------eeeeeEEEEE-------------E
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQATI-----------GIDFLSKTMY-------------L 53 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~ 53 (208)
+...|+|+|.+|+||||+++.|. +.+.. +.+.+.. ++.+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987 33220 0000100 0111110000 0
Q ss_pred CCeEEEEEEEecCCchhhcc----chhhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeE-EEEEeCCCC
Q 028466 54 EDRTVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKTDL 126 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~ 126 (208)
....+.+.|+||||...... ..... ...+|.+++|+|+....... .....+... .|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCcc
Confidence 00235799999999653221 11111 23789999999998643211 112222221 453 777899998
Q ss_pred cCccCcCHHHHHHHHHHcCCeE------------------EEeecCCCCC-HHHHHHHHHHH
Q 028466 127 VDKRQVSIEEGEAKARELNVMF------------------IETSAKAGFN-IKALFRKIAAA 169 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~~ 169 (208)
..... .+.......++++ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 53211 1222333444432 3468888989 99999999876
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.94 E-value=2.3e-08 Score=79.91 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=86.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee---eeeeeEEEEEECCeEEEEEEEecCCchhhccchhhh-----hc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR 80 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 80 (208)
...++|+|++|+|||||+|.+.+...+....... ..+.....+.. .....+++||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3589999999999999999998754322211111 00000111111 111157899999864322222222 33
Q ss_pred cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCc-------CccCcCHHH----HHHHH----HHcC
Q 028466 81 DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLV-------DKRQVSIEE----GEAKA----RELN 145 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-------~~~~~~~~~----~~~~~----~~~~ 145 (208)
..+..++ ++...++ .+-......+.. .+.|+++|.||.|+. .-......+ ++.+. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4465555 6664211 111112222222 358999999999974 111122222 23332 1222
Q ss_pred ---CeEEEeecC--CCCCHHHHHHHHHHHcCCCc
Q 028466 146 ---VMFIETSAK--AGFNIKALFRKIAAALPGME 174 (208)
Q Consensus 146 ---~~~~~~S~~--~~~~v~~~~~~l~~~~~~~~ 174 (208)
..++.+|++ ++.|++++.+.|.+.+++.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 367889994 55579999999999987665
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.92 E-value=1e-09 Score=83.19 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=72.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCCCCcc-------ceeeeeeeEEEEEEC--CeEEEEEEEecCCchhhcc------
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-------ATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------ 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~------ 73 (208)
.++++|+|++|+|||||+|.|.+...+.... ...+.......+... +-...++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998643321110 000000011111111 1112679999998432100
Q ss_pred chhh----------------------hhccCCEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCeEEEEEeCCCCcCcc
Q 028466 74 LIPS----------------------YIRDSSVAVIVYDVASRQSFLNT-TKWVEEVRTERGSDVIIVLVGNKTDLVDKR 130 (208)
Q Consensus 74 ~~~~----------------------~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 130 (208)
.... .+..+++.++++|.... .+... ...+..+. .. .++|+|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 0000 11235888889986521 11111 22223332 23 8899999999986543
Q ss_pred Cc--CHHHHHHHHHHcCCeEEEe
Q 028466 131 QV--SIEEGEAKARELNVMFIET 151 (208)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~ 151 (208)
+. ....+......+++.+|+.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHcCccccCC
Confidence 22 2344555666778877654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.92 E-value=9e-11 Score=92.81 Aligned_cols=135 Identities=12% Similarity=0.119 Sum_probs=75.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCCCC-------CCccceeeeeeeEEEEEECCeEEEEEEEecCCchhhccc----h--
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----I-- 75 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~-- 75 (208)
..+++++|.+|+|||||+|+|++.... ....+..+ .....+.+.. .+.++||||....... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence 468999999999999999999875311 11222222 2233333433 2789999996433211 1
Q ss_pred --hhh--hccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHHcCCeEEEe
Q 028466 76 --PSY--IRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARELNVMFIET 151 (208)
Q Consensus 76 --~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
..+ .+..+.++++++....-.+..+.. +......+.|+++++||.|.....+. ......+.+..+..+++.
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence 111 356788888888742100001000 11222356899999999998654332 333344445566655555
Q ss_pred ec
Q 028466 152 SA 153 (208)
Q Consensus 152 S~ 153 (208)
++
T Consensus 310 ~~ 311 (368)
T 3h2y_A 310 TP 311 (368)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=1.1e-09 Score=86.65 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=71.1
Q ss_pred CchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHH----HHH
Q 028466 67 GQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEA----KAR 142 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~~ 142 (208)
.++.|......++..++++++|+|++++.+ .|...+.... .+.|+++|+||+|+.+.. ........ .+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 477899999888899999999999998753 2333333332 268999999999997542 22333333 355
Q ss_pred HcCC---eEEEeecCCCCCHHHHHHHHHHHc
Q 028466 143 ELNV---MFIETSAKAGFNIKALFRKIAAAL 170 (208)
Q Consensus 143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~~~ 170 (208)
..+. .++.+||+++.|++++++.|.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 789999999999999999998765
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=1.3e-09 Score=83.04 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=69.1
Q ss_pred EEecCCch-hhccchhhhhccCCEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHH
Q 028466 62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVASRQSFL--NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGE 138 (208)
Q Consensus 62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 138 (208)
|...|||. .........+.++|+++.|+|+.+|.+.. .+..++ .++|.++|+||+|+.+... .....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 45678876 45556677899999999999999886654 233332 3689999999999965211 12223
Q ss_pred HHHHHcCCeEEEeecCCCCCHHHHHHHHHHHcC
Q 028466 139 AKARELNVMFIETSAKAGFNIKALFRKIAAALP 171 (208)
Q Consensus 139 ~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~~~ 171 (208)
.+..+.+++++.+|+.++.|++++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 334445788999999999999999998887764
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.57 E-value=6e-08 Score=73.89 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=36.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCCCC-CCccceeeeeeeEEEEEECCeEEEEEEEecCCchh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
..++++++|.+|+|||||+|+|.+.... ....+..|.+.. .+..+. .+.++||||...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcCC
Confidence 4689999999999999999999987642 222333333332 233332 588999999643
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.52 E-value=4.4e-07 Score=72.91 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=50.5
Q ss_pred EEEEEEecCCchhhccch----h--hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSLI----P--SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|........ . ......|.+++|+|+....... .....+... -.+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCccc--
Confidence 578999999953322111 1 1233579999999997543222 222333322 1345677899997432
Q ss_pred cCHHHHHHHHHHcCCeEEEeec
Q 028466 132 VSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
...+.......++++..++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 33445555567888877775
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=4.6e-08 Score=73.75 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=36.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 5999999999999999999998765321 12222222222233332 5789999997643
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.44 E-value=1.7e-07 Score=75.49 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=46.8
Q ss_pred EEEEEEecCCchhhccchh----h--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-e-EEEEEeCCCCcCc
Q 028466 58 VRLQLWDTAGQERFRSLIP----S--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDV-I-IVLVGNKTDLVDK 129 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~~~~ 129 (208)
+.+.|+||||......... . .+..+|.+++|+|+.... ........+. ... | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 5689999999654221111 1 123689999999987542 2222222222 224 4 7788899997421
Q ss_pred cCcCHHHHHHHHHHcCCeEEEe
Q 028466 130 RQVSIEEGEAKARELNVMFIET 151 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
...+.......+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 122334556666665544
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=6.3e-08 Score=72.97 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=62.1
Q ss_pred cCCchh-hccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHHHHHHHH
Q 028466 65 TAGQER-FRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKARE 143 (208)
Q Consensus 65 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (208)
.|||-. ........+.++|+++.|+|+.+|.+..... +. +. ++|.++|+||+|+.+... ......+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 366542 3345566789999999999999876553210 11 11 589999999999975321 1222334445
Q ss_pred cCCeEEEeecCCCCCHHHHHHHHHHH
Q 028466 144 LNVMFIETSAKAGFNIKALFRKIAAA 169 (208)
Q Consensus 144 ~~~~~~~~S~~~~~~v~~~~~~l~~~ 169 (208)
.+.++ .+|+.++.|++++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 57788 99999999999998887654
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.32 E-value=4.7e-07 Score=75.37 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=38.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCcccee-eeeeeEEEE--EE-CCeEEEEEEEecCCchh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTM--YL-EDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+|+|.+|+|||||+|+|++....-....+. +.+.....+ .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356889999999999999999999876421111111 111111111 11 11224689999999654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=3.6e-07 Score=73.39 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=52.3
Q ss_pred EEEEEEecCCchh--hcc----chhh--hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCc
Q 028466 58 VRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDK 129 (208)
Q Consensus 58 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 129 (208)
+.+.|+||||... ... .... .....|.+++|+|+....... .....+.... .+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc-
Confidence 5688999999543 111 1111 122568999999997543222 2223333222 34577789999742
Q ss_pred cCcCHHHHHHHHHHcCCeEEEeecCCCCC
Q 028466 130 RQVSIEEGEAKARELNVMFIETSAKAGFN 158 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 158 (208)
....+.......++++..++. |++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~ 276 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEK 276 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCC
Confidence 234455566667888877775 544
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.15 E-value=8.7e-07 Score=68.10 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=60.1
Q ss_pred ccchhhhhccCCEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC--cCHHHHHHHHHHcCCeE
Q 028466 72 RSLIPSYIRDSSVAVIVYDVASRQSFL-NTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ--VSIEEGEAKARELNVMF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~ 148 (208)
..+.+..+.++|.+++|+|+.+|..-. .+..++..+. ..++|.++|+||+|+.+..+ .............+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 344555788999999999998764333 3444433322 23588899999999975432 01233444445568899
Q ss_pred EEeecCCCCCHHHHHHH
Q 028466 149 IETSAKAGFNIKALFRK 165 (208)
Q Consensus 149 ~~~S~~~~~~v~~~~~~ 165 (208)
+.+|+.++.|+++++..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999988887765543
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.06 E-value=7.9e-06 Score=62.59 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=54.2
Q ss_pred EEEEEEecCCchh--hcc-chh-----hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCcC
Q 028466 58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLVD 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 128 (208)
+.+.|+||||... ... ... .....+|.+++|.|+.... ........+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999765 221 111 1345789999999986432 22222222322 244 667789999742
Q ss_pred ccCcCHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 129 KRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
....+.......++++..++ .|++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 23345566777788877766 455554
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.02 E-value=9.7e-06 Score=68.14 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
..++|+|++|+|||||++.+.+-..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC
Confidence 3599999999999999999987643
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=4.2e-05 Score=59.36 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=50.5
Q ss_pred EEEEEecCCchhhccchhh------hhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCc
Q 028466 59 RLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 132 (208)
.+.++|++|.......... ..-..|-.+++.|+.... .+......+.... ..-++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 4667999996432221111 122468899999986432 2233333333222 22356679999622
Q ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCHH
Q 028466 133 SIEEGEAKARELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 160 (208)
..-.+.......+.++..++ +|++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 13345566677788877777 555543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.82 E-value=7.6e-05 Score=58.48 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=54.6
Q ss_pred hhccCCEEEEEEeCCChhhH-HhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcC-HHHHHHHHHHcCCeEEEeecCC
Q 028466 78 YIRDSSVAVIVYDVASRQSF-LNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVS-IEEGEAKARELNVMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~S~~~ 155 (208)
...++|.+++|... +|..- ..+..++...... ++|.++|+||+|+.+..... ...........+++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36789999988665 45432 2344444333222 47778999999997542210 1122333345678999999999
Q ss_pred CCCHHHHHHHH
Q 028466 156 GFNIKALFRKI 166 (208)
Q Consensus 156 ~~~v~~~~~~l 166 (208)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887654
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.82 E-value=1.8e-06 Score=70.36 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=60.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcCCCCCCccceeeeeeeEEEEEECCeEEEEEEEecCCchhh--ccch--------h
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI--------P 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~ 76 (208)
...+.|+++|.+|+||||+.++|...... ....+.............+......+||..|.+.+ ...+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998743210 01111111100000000011123457888887432 2222 4
Q ss_pred hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEE
Q 028466 77 SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVG 121 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~ 121 (208)
.++...++.++|+|+++. ..+....|+..+... ..+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 456667888999999976 455556666655543 24444443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=3.8e-05 Score=61.90 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+-.-|.|+|++++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456688999999999999999985
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.40 E-value=8.7e-05 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988654
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=0.00014 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+.++.--|+|+|++|+|||||++.|...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3455667899999999999999999854
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=9.1e-05 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.-.++|+|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3578999999999999999998654
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00017 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.--++|+|++|+|||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998754
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00015 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.21 E-value=0.00078 Score=54.23 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=36.4
Q ss_pred EEEEEEecCCchhhccchh------hhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 028466 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVI-IVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 127 (208)
+.+.|+||||......... ......|.+++|+|+...... ......+.. ..+ .-+|+||.|..
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCC
Confidence 5799999999654322111 124478999999999754222 222222222 133 24567999974
No 242
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.21 E-value=0.00019 Score=51.74 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+...|+|+|++|+|||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998765
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.00028 Score=49.86 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCCCcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 4 VSALAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+..++...|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455678999999999999999988654
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.13 E-value=0.00023 Score=50.43 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998754
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.12 E-value=0.00024 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
--++|+|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999998764
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.11 E-value=0.00025 Score=51.76 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.--++|+|++|+|||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999987643
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.11 E-value=0.00095 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999998 53
No 248
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.11 E-value=0.0003 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
+...|+|+|++|+||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44679999999999999999987654
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00025 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
=-++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999654
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.09 E-value=0.00026 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999988764
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.08 E-value=0.00027 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.-.++|+|++|+|||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999987643
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.06 E-value=0.00038 Score=50.24 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+...|+|+|++|+|||||++.|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998764
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.05 E-value=0.00042 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-.++|+|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999999765
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.04 E-value=0.00034 Score=49.66 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
|+|+||+|+||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.03 E-value=0.00044 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
++...|+|+|.+|+||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 445679999999999999999886
No 256
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00055 Score=47.79 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
++...|+|+|++|+||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998754
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.98 E-value=0.0004 Score=51.26 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999887653
No 258
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.98 E-value=0.00046 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+.-.|+|+|++|+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.96 E-value=0.00043 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.--|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999998653
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00047 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998753
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00053 Score=49.43 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.92 E-value=0.00046 Score=50.52 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.89 E-value=0.00054 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-|+|+|++|||||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998643
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.89 E-value=0.00056 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-.++|+|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999987654
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.88 E-value=0.00055 Score=47.29 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999987654
No 266
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00065 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999875
No 267
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.87 E-value=0.00073 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
|+...|+|.|.+||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.86 E-value=0.00059 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.86 E-value=0.00061 Score=49.52 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.86 E-value=0.0006 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887653
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.85 E-value=0.00064 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988765
No 272
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.85 E-value=0.00062 Score=49.75 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=19.7
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
|..+..+ ..|+|.|++||||||+.+.|.
T Consensus 1 m~~~~~~--~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 1 MGASARL--LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp ------C--CEEEEEECTTSSHHHHHHHHH
T ss_pred CCccccC--cEEEEECCCCCCHHHHHHHHH
Confidence 4444333 679999999999999999875
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.84 E-value=0.0006 Score=51.14 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887653
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.84 E-value=0.00067 Score=47.01 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCcHHHHHHHh
Q 028466 10 YKLVFLGDQSVGKTSIITRF 29 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l 29 (208)
.-|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.00079 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|.|++|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 276
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.83 E-value=0.012 Score=47.39 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=50.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh---c---------------CCCCC---CccceeeeeeeEEEE--EE-CCeEEEEEEE
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM---Y---------------DKFDN---TYQATIGIDFLSKTM--YL-EDRTVRLQLW 63 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~---~---------------~~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~i~ 63 (208)
+-.-|.|+|..++|||+|+|.|+ + ..|.. ...-|.++-.-...+ .. ++....+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44566799999999999999654 1 12211 111233332222111 11 4556789999
Q ss_pred ecCCchhhccch-------hhhhccCCEEEEEE-eCCChhhHHhHHHH
Q 028466 64 DTAGQERFRSLI-------PSYIRDSSVAVIVY-DVASRQSFLNTTKW 103 (208)
Q Consensus 64 D~~G~~~~~~~~-------~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 103 (208)
||.|........ ....--++.+|+=. ..-+...++.+..+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~~ 193 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLF 193 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHHH
Confidence 999965433211 11122356666633 33344555555443
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.83 E-value=0.00064 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999887653
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.00066 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999987653
No 279
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.81 E-value=0.00096 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.81 E-value=0.00074 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999887653
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.80 E-value=0.00067 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887654
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.80 E-value=0.00074 Score=50.19 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.80 E-value=0.00067 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-++|+|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.78 E-value=0.00091 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+...|+|+|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.78 E-value=0.00072 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999887653
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.78 E-value=0.00081 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 287
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.78 E-value=0.00077 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999885
No 288
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.77 E-value=0.00073 Score=49.99 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887653
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.76 E-value=0.001 Score=49.96 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999887654
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00083 Score=46.54 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.76 E-value=0.00078 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 292
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.76 E-value=0.00081 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999885
No 293
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.75 E-value=0.00085 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+|+|++|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.75 E-value=0.00079 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999887653
No 295
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.74 E-value=0.00094 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-.++++|++|+|||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4578999999999999999986544
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.001 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 297
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.74 E-value=0.00081 Score=50.07 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.74 E-value=0.00087 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999988765
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.73 E-value=0.00085 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
..++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999854
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.72 E-value=0.00072 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.72 E-value=0.00083 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.=.++|+|++|+|||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 346899999999999999988743
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.72 E-value=0.00092 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999887653
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.72 E-value=0.00079 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
=.++|+|++|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998875
No 304
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.71 E-value=0.00088 Score=50.40 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998875
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.71 E-value=0.00092 Score=50.38 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.71 E-value=0.0012 Score=47.15 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+.+.|+|+|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998863
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.001 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.67 E-value=0.00095 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.67 E-value=0.00096 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887654
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.67 E-value=0.00096 Score=50.14 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999887653
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.64 E-value=0.0014 Score=50.45 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+..-|+|+|++|+|||||++.|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45678999999999999999988653
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.0013 Score=46.48 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999998864
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0017 Score=47.18 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=18.9
Q ss_pred CcceeE-EEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKL-VFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i-~vvG~~~~GKStli~~l~ 30 (208)
+++.|| +|+|+|||||+|....|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 444555 567999999999998876
No 314
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0012 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988764
No 315
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0018 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+...|+|.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999886
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.61 E-value=0.00066 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhh-cC
Q 028466 10 YKLVFLGDQSVGKTSIITRFM-YD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~-~~ 32 (208)
--++|+|++|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468899999999999999998 54
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0012 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
+|+|+|++|+||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999875
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.61 E-value=0.0017 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+...|+|+|++|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988754
No 319
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.61 E-value=0.0011 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 320
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.00092 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988643
No 321
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.0015 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998863
No 322
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.60 E-value=0.0015 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.++|+|.|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 323
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.60 E-value=0.0014 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
+.|+|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 324
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.0013 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
-.|+|+|++||||||+.+.|.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999886
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.59 E-value=0.0013 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.59 E-value=0.0015 Score=48.39 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|.|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.00058 Score=47.83 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988754
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0016 Score=46.53 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|+|++|+||||+.+.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998764
No 329
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.57 E-value=0.00091 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=15.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+...|+|.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999885
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0015 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999988754
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.0014 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0014 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
++|+|+|+|||||+|...+|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999876
No 333
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.55 E-value=0.0013 Score=48.44 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.55 E-value=0.0018 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+..-|+|.|++|+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457789999999999999999864
No 335
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.54 E-value=0.0012 Score=48.04 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 336
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.53 E-value=0.0021 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
..+...|+|+|++|+|||||.+.|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999998765
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.53 E-value=0.00095 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
=.++|+|++|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999988754
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.0022 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.5
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
++...|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998753
No 339
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.51 E-value=0.0017 Score=50.41 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=19.6
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
|++|. |+ .-|+|+|++|||||||...|.
T Consensus 1 ~~~m~-m~-~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 1 MTEMT-KP-FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp ------CC-EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCC-CC-ceEEEECCCcCcHHHHHHHHH
Confidence 56654 33 568999999999999999875
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.50 E-value=0.0014 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998753
No 341
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.0089 Score=40.22 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999977543
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.49 E-value=0.0018 Score=46.08 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999988754
No 343
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.49 E-value=0.0024 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.49 E-value=0.0017 Score=47.09 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
.+.|+|+|.+||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999875
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.49 E-value=0.0015 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999887653
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.47 E-value=0.0017 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-++|+|++|+|||||++.+.+-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999998886543
No 347
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.45 E-value=0.0018 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.45 E-value=0.0016 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-++|+|++|+|||||++.+.+-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999998876543
No 349
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0019 Score=45.78 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999875
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.43 E-value=0.0019 Score=44.55 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.42 E-value=0.0017 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999887654
No 352
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.0017 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-++|+|++|+|||||++.+.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 478999999999999998876543
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0017 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999887654
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.0025 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.8
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
.+.+-|.|+|++|||||||++.|.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999875
No 355
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.40 E-value=0.0021 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 356
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.39 E-value=0.0022 Score=47.60 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.1
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998754
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.39 E-value=0.0018 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999887654
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.38 E-value=0.0022 Score=47.67 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+|+|++|+||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0027 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|+|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457799999999999999998763
No 360
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.37 E-value=0.0017 Score=50.83 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.37 E-value=0.0019 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999887653
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.36 E-value=0.0026 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.36 E-value=0.0023 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+...|+|+|++|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 364
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.36 E-value=0.0019 Score=50.92 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
-++|+|++|+|||||++.+.+-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999998876543
No 365
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.35 E-value=0.0023 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.3
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
.+.+||+|+|.+|||||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999999853
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.34 E-value=0.0023 Score=44.63 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..+.|+|.+|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999874
No 367
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.34 E-value=0.0015 Score=44.56 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
-.++|+|++|+|||+|++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988753
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.33 E-value=0.0022 Score=46.67 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
.|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999875
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.33 E-value=0.0019 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
.-.++|+|++|+||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578899999999999999875
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.32 E-value=0.0021 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCcHHHHHHHhh
Q 028466 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~ 30 (208)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999875
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.31 E-value=0.0021 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
-.++|+|++|+|||||++.+.+--
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988653
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.31 E-value=0.0021 Score=48.54 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998753
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.30 E-value=0.003 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.4
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.-.++|+|++|+|||||++.+.+--
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3478999999999999999987643
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.29 E-value=0.003 Score=46.20 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+..-|+|.|+.|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999988764
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.27 E-value=0.0016 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999887654
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0023 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.--++++|+.|+||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34578899999999999999876
No 377
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.25 E-value=0.0032 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|+|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998865
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.24 E-value=0.0028 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.+.|+|.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999875
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.24 E-value=0.0027 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.24 E-value=0.0027 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.24 E-value=0.0034 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998763
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.23 E-value=0.0027 Score=46.03 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
.+.|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999875
No 383
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.22 E-value=0.0025 Score=47.27 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.22 E-value=0.0025 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
=.++|+|++|+|||||++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0025 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.2
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+...|+++|++|+||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998754
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.19 E-value=0.0025 Score=45.18 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 387
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.19 E-value=0.003 Score=44.15 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998764
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.18 E-value=0.0025 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988754
No 389
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.17 E-value=0.0028 Score=44.37 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998753
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.16 E-value=0.0011 Score=47.66 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998863
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.11 E-value=0.0032 Score=46.90 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
-|+|+|++|||||||.+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999885
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.11 E-value=0.0016 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.++|+|++|+|||||++.+.+-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999998876543
No 393
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.10 E-value=0.0034 Score=43.44 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998753
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.10 E-value=0.0032 Score=44.20 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998753
No 395
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.09 E-value=0.0043 Score=47.53 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=19.8
Q ss_pred CCCCCCCc-ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 1 MAPVSALA-KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~-~~~i~vvG~~~~GKStli~~l~~ 31 (208)
|+.|.... ..-|+|+|++|||||+|...|..
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence 55544322 34578899999999999998863
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.09 E-value=0.0029 Score=50.63 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
-++|+|+.|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998754
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.07 E-value=0.0024 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
-++|+|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46788999999999999998653
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.07 E-value=0.0042 Score=46.37 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.07 E-value=0.0039 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...|+|+|.+|+||||+.+.|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 400
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0028 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-.++|+|+.|+|||||++.|.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 347899999999999999988754
No 401
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.03 E-value=0.0048 Score=45.01 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCCCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 2 APVSALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+|+...+..-|+|.|.+|+||||+++.|.
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35666778889999999999999999875
No 402
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.00 E-value=0.0037 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
++|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988754
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.00 E-value=0.0037 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
-++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999988743
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0037 Score=48.99 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.-.++++|+.|+||||+++.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34578999999999999999876
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.97 E-value=0.0049 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
-.++|+|++|+|||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999987643
No 406
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.97 E-value=0.0037 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988653
No 407
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.96 E-value=0.012 Score=41.88 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCeEEEEEeCCCCcCccCcCHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTER--GSDVIIVLVGNKTDLVDKRQVSIE 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~ 135 (208)
+.+.|+|+|+.. .......+..+|.+|++...+.. + ..+...+..+.... ..+.++.+|.|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578999999865 33445567789999999988643 4 55666666665433 234667888999995322 233
Q ss_pred HHHHHHHHcCCeEE
Q 028466 136 EGEAKARELNVMFI 149 (208)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (208)
+..+...+++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555666665544
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.92 E-value=0.004 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.-.++|+|++|+|||||++.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 34578999999999999999875
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.91 E-value=0.0052 Score=42.43 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
.|+|.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999875
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.90 E-value=0.0043 Score=48.45 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.=+++|+|+.|+|||||++.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999988764
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.87 E-value=0.0072 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+..-|+|.|++|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457789999999999999998864
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.87 E-value=0.0054 Score=41.75 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q 028466 12 LVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~ 30 (208)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999875
No 413
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.85 E-value=0.0059 Score=43.46 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
.-+.|.|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988643
No 414
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.83 E-value=0.0067 Score=43.64 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|+|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998753
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.004 Score=43.33 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.++|.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998764
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.82 E-value=0.0047 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=18.0
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhh
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
++..-|+|.|.+|+||||+++.|.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999999875
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.81 E-value=0.0045 Score=47.03 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0051 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.|+|+|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998753
No 419
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.77 E-value=0.0054 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 420
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0053 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 421
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.75 E-value=0.0057 Score=44.16 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
+.|+|+|++|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998754
No 422
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.75 E-value=0.0069 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.0056 Score=44.07 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
--++|+|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.70 E-value=0.0056 Score=49.35 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.=+++|+|++|+|||||++.+.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3478999999999999999888664
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.70 E-value=0.0081 Score=49.74 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988653
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.69 E-value=0.006 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
--++|+|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999998864
No 427
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.68 E-value=0.0061 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998764
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.66 E-value=0.01 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
...-|+|+|.+|+||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688899999999999999875
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0077 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.7
Q ss_pred CcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.+...|+|+|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998764
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.65 E-value=0.006 Score=50.99 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368999999999999999887653
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.64 E-value=0.006 Score=49.66 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
.++|+|++|+|||||++.+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999876
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.60 E-value=0.008 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.57 E-value=0.0078 Score=40.58 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999988654
No 434
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.55 E-value=0.0094 Score=43.14 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.9
Q ss_pred CCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 6 ALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
.|+..-|+|.|.+|+||||+++.|.
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHH
Confidence 3667889999999999999999875
No 435
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.54 E-value=0.0091 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999887653
No 436
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.54 E-value=0.083 Score=37.84 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=55.8
Q ss_pred EEEEEEecCCc-hhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHH
Q 028466 58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEE 136 (208)
Q Consensus 58 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 136 (208)
+.+.|+|+|+. .. ......+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+.|.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 57899999976 33 23445677899999999875 456666666666665533 3567888899986420 11344
Q ss_pred HHHHHHHcCCeEE
Q 028466 137 GEAKARELNVMFI 149 (208)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (208)
..+...+++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555566666544
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0095 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=-++|+|+.|+|||||++.+.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999988653
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0095 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999887653
No 439
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.50 E-value=0.0072 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.++|+|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998874
No 440
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.48 E-value=0.014 Score=41.86 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.1
Q ss_pred CCCCCCCcceeEEEEcCCCCcHHHHHHHhhc
Q 028466 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
|+|.-+.+..-|+|.|.++|||+++.+.+..
T Consensus 3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence 7777555678999999999999999988764
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.47 E-value=0.0062 Score=51.05 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 368999999999999999887653
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.46 E-value=0.0084 Score=43.41 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998863
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.01 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
..-|+|+|++|||||+|...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 356889999999999999998643
No 444
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.45 E-value=0.0087 Score=42.75 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.++|.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.44 E-value=0.0063 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
=.++++|++|+|||||++.+.+-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 36899999999999999977654
No 446
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.42 E-value=0.0071 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 478999999999999999887543
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.39 E-value=0.012 Score=49.47 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999887653
No 448
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.39 E-value=0.0089 Score=46.98 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHhh
Q 028466 12 LVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~ 30 (208)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 449
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.37 E-value=0.0088 Score=44.98 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988643
No 450
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.36 E-value=0.0088 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.++|.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 451
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.36 E-value=0.0094 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||++.+.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998864
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0088 Score=45.02 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 453
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.30 E-value=0.0083 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
=.++++|++|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999987654
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.013 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999886543
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.25 E-value=0.014 Score=48.29 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.23 E-value=0.014 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999887543
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.23 E-value=0.015 Score=41.60 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.0
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
....|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678999999999999999997653
No 458
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.22 E-value=0.17 Score=36.87 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=56.9
Q ss_pred EEEEEEecCCchhhccchhhhhccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccCcCHHHH
Q 028466 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.|+|+|+.. .......+..+|.+|++...+ ..+...+...+..+.........+.+|.|+.+.... ....
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD-- 191 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence 568999999754 334555678899999999875 567777777777776543333457788899986432 2232
Q ss_pred HHHHHHcCCeEEEee
Q 028466 138 EAKARELNVMFIETS 152 (208)
Q Consensus 138 ~~~~~~~~~~~~~~S 152 (208)
.....++.+++..-
T Consensus 192 -~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 192 -EIEKVIGRPISKRI 205 (245)
T ss_dssp -HHHHHHTSCEEEEE
T ss_pred -HHHHHhCCCeEEEC
Confidence 33344566665543
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.18 E-value=0.011 Score=45.03 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-+++.|++|+|||+|.+.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567779999999999998864
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.18 E-value=0.013 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=20.7
Q ss_pred CCCcceeEEEEcCCCCcHHHHHHHhh
Q 028466 5 SALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+.|+..-|+|.|.+|+||||+++.|.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34566789999999999999999875
No 461
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.17 E-value=0.011 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999988753
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.16 E-value=0.012 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.6
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+...|+|.|..|+||||+.+.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999998764
No 463
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.15 E-value=0.011 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998864
No 464
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.15 E-value=0.016 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-|+|+|+.|+|||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998864
No 465
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.13 E-value=0.011 Score=45.12 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=46.5
Q ss_pred EEEEEEecCCchhhccc-h---hhhhc--cCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCCCcCccC
Q 028466 58 VRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTDLVDKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|....... . ...+. ..+.+++|+|++.. ...+..+...+. ..+. .-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccc--
Confidence 56899999997643321 1 12222 35778889988732 233333322222 1112 2355699997422
Q ss_pred cCHHHHHHHHHHcCCeEEEee
Q 028466 132 VSIEEGEAKARELNVMFIETS 152 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~S 152 (208)
...+...+...++++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355666677777655444
No 466
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.11 E-value=0.014 Score=42.67 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.5
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
.-+++.|+|++||||||+...|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 35789999999999999999875
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.09 E-value=0.011 Score=45.98 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHhhc
Q 028466 12 LVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~ 31 (208)
++|.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998865
No 468
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.08 E-value=0.012 Score=42.40 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.+++.|++|+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999887753
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.07 E-value=0.0076 Score=45.80 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=17.4
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhc
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~ 31 (208)
+.+.|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998753
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.03 E-value=0.013 Score=44.86 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=47.0
Q ss_pred EEEEEEecCCchhhccch-------hhhh-----ccCCEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 028466 58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~-------~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 125 (208)
+.+.|+||||........ ...+ ...|.+++|.|+... .+.+.. ...+.... ...-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence 458999999953221111 1111 247889999998633 222222 22232221 22345569999
Q ss_pred CcCccCcCHHHHHHHHHHcCCeEEEeec
Q 028466 126 LVDKRQVSIEEGEAKARELNVMFIETSA 153 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 153 (208)
.... .-.+.......++++..+..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 6321 23466777788887776654
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.016 Score=42.54 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
..|+|.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.01 E-value=0.015 Score=41.69 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.2
Q ss_pred eEEEEcCCCCcHHHHHHHhh
Q 028466 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~ 30 (208)
-.+|+|+.|+||||+++.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999864
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.017 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHhhcCCC
Q 028466 12 LVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~~~ 34 (208)
++|+|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999887544
No 474
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.00 E-value=0.017 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.8
Q ss_pred ceeEEEEcCCCCcHHHHHHHhh
Q 028466 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~ 30 (208)
...++|.|++|+|||++.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999998654
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.012 Score=45.91 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.97 E-value=0.014 Score=44.25 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.+++.|++|+|||++.+.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.96 E-value=0.016 Score=40.73 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHhhcC
Q 028466 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKStli~~l~~~ 32 (208)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999754
No 478
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.92 E-value=0.013 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998865
No 479
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.89 E-value=0.015 Score=42.51 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877753
No 480
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.87 E-value=0.015 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 481
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.85 E-value=0.023 Score=42.50 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.1
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
....++|.|++|+|||+|...+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999988653
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.83 E-value=0.016 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
-.++|+|++|+|||++.+.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999987643
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.79 E-value=0.025 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=19.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
...+|+|+|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998654
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.016 Score=44.95 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988654
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.78 E-value=0.016 Score=44.65 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHhhcC
Q 028466 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~~ 32 (208)
-.|+|.|++|+|||+|.+.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999988753
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.77 E-value=0.018 Score=50.80 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999986544
No 487
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.13 Score=37.50 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
++-|++.|+++.||++|++++.+..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 3444444999999999999998774
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.66 E-value=0.022 Score=39.75 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhcCC
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~~~ 33 (208)
..-+++.|++|+||||+.-.|....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 4568999999999999999998654
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.62 E-value=0.02 Score=44.03 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|.+.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999998864
No 490
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.61 E-value=0.25 Score=37.65 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.2
Q ss_pred eEEEE-cCCCCcHHHHHHHhhc
Q 028466 11 KLVFL-GDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vv-G~~~~GKStli~~l~~ 31 (208)
.++++ |++|+|||++++.+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 34444 6699999999998864
No 491
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.58 E-value=0.012 Score=51.94 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHhhcCC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988653
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.57 E-value=0.024 Score=41.01 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.7
Q ss_pred cceeEEEEcCCCCcHHHHHHHhh
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~ 30 (208)
+..-|+|-|.+|+||||+++.|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999999875
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.019 Score=45.99 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
--|++.|+||+|||+|.+.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.55 E-value=0.015 Score=48.32 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.3
Q ss_pred cceeEEEEcCCCCcHHHHHHHhhcC
Q 028466 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKStli~~l~~~ 32 (208)
+...|+|+|++|+|||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4467999999999999999988654
No 495
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.021 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHhhcC
Q 028466 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~~ 32 (208)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999987643
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.47 E-value=0.0094 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHhhc
Q 028466 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKStli~~l~~ 31 (208)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998864
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.46 E-value=0.02 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHhhc
Q 028466 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKStli~~l~~ 31 (208)
-.++|.|++|+|||+|++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.46 E-value=0.024 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998754
No 499
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.46 E-value=0.019 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.022 Score=45.80 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCcHHHHHHHhhc
Q 028466 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKStli~~l~~ 31 (208)
.-.|++.||||+|||.|.+.+.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999998864
Done!