Query 028468
Match_columns 208
No_of_seqs 242 out of 1668
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 3.4E-25 7.4E-30 174.9 12.6 115 88-205 13-136 (137)
2 PRK11597 heat shock chaperone 99.9 1.9E-24 4.2E-29 171.4 14.0 97 107-206 31-135 (142)
3 COG0071 IbpA Molecular chapero 99.9 9.5E-24 2.1E-28 168.0 14.1 98 107-205 39-145 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 7.7E-22 1.7E-26 145.2 10.9 83 110-193 1-92 (92)
5 cd06497 ACD_alphaA-crystallin_ 99.9 2.8E-21 6.1E-26 141.2 11.4 81 112-193 4-86 (86)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 5.6E-21 1.2E-25 142.3 12.4 93 112-205 1-101 (102)
7 cd06471 ACD_LpsHSP_like Group 99.9 5.8E-21 1.2E-25 140.5 11.1 82 110-193 2-93 (93)
8 cd06479 ACD_HspB7_like Alpha c 99.9 6.2E-21 1.3E-25 138.0 10.4 79 112-193 2-81 (81)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 8.8E-21 1.9E-25 137.6 11.1 81 112-193 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.8 1.3E-20 2.9E-25 137.0 11.3 81 113-194 2-84 (84)
11 cd06470 ACD_IbpA-B_like Alpha- 99.8 3.2E-20 7E-25 136.4 11.5 82 109-193 1-90 (90)
12 cd06475 ACD_HspB1_like Alpha c 99.8 3E-20 6.4E-25 135.7 11.3 81 111-192 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.8 7.3E-20 1.6E-24 132.9 11.0 80 113-193 2-83 (83)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 3.2E-19 7E-24 129.5 11.0 78 114-192 3-82 (83)
15 cd06526 metazoan_ACD Alpha-cry 99.8 3.9E-19 8.4E-24 128.5 10.1 76 117-193 6-83 (83)
16 cd06481 ACD_HspB9_like Alpha c 99.8 3.7E-19 8.1E-24 130.2 9.8 78 115-193 4-87 (87)
17 cd06464 ACD_sHsps-like Alpha-c 99.8 1.8E-18 3.9E-23 124.1 10.3 81 112-193 1-88 (88)
18 cd06482 ACD_HspB10 Alpha cryst 99.8 1.7E-18 3.6E-23 126.8 10.1 76 116-192 6-86 (87)
19 KOG0710 Molecular chaperone (s 99.8 6.7E-19 1.5E-23 146.7 7.9 165 29-208 13-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 7.1E-16 1.5E-20 113.8 10.4 79 114-193 11-91 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.6 4.7E-14 1E-18 97.5 10.7 80 113-193 1-80 (80)
22 KOG3591 Alpha crystallins [Pos 99.6 3.9E-14 8.4E-19 115.9 11.3 97 109-206 63-162 (173)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.8E-11 4E-16 86.5 8.7 70 114-196 2-71 (78)
24 cd06463 p23_like Proteins cont 99.0 3.1E-09 6.7E-14 74.8 9.4 75 114-196 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 4.2E-09 9E-14 86.1 10.3 78 107-197 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.4E-08 7.3E-13 70.5 8.6 77 112-196 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 3.6E-06 7.9E-11 58.5 12.5 77 109-193 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 1.8E-05 4E-10 59.5 10.7 78 109-195 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.1 3.5E-05 7.5E-10 55.3 9.4 76 112-195 1-76 (84)
30 PF08190 PIH1: pre-RNA process 98.0 2.8E-05 6.1E-10 68.7 8.8 65 117-192 260-327 (328)
31 cd06468 p23_CacyBP p23_like do 98.0 0.00018 3.8E-09 52.3 10.9 79 110-196 3-85 (92)
32 cd06467 p23_NUDC_like p23_like 97.9 0.00012 2.6E-09 52.1 8.8 75 111-196 1-77 (85)
33 cd06488 p23_melusin_like p23_l 97.9 0.00027 5.8E-09 51.3 10.2 78 111-196 3-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00033 7.1E-09 50.5 9.7 76 111-197 1-78 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.5 0.0011 2.3E-08 49.1 9.4 78 107-196 4-83 (93)
36 cd00237 p23 p23 binds heat sho 97.4 0.0034 7.5E-08 47.4 11.0 78 109-196 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.8 0.0086 1.9E-07 54.1 9.6 80 109-196 157-236 (356)
38 cd06492 p23_mNUDC_like p23-lik 96.6 0.032 7E-07 40.5 9.4 73 113-196 3-79 (87)
39 cd06490 p23_NCB5OR p23_like do 96.5 0.056 1.2E-06 39.1 10.3 76 111-196 1-80 (87)
40 KOG1309 Suppressor of G2 allel 96.5 0.012 2.6E-07 48.5 7.3 79 108-194 3-81 (196)
41 cd06495 p23_NUDCD3_like p23-li 96.5 0.072 1.6E-06 40.0 10.9 81 107-195 3-86 (102)
42 KOG3158 HSP90 co-chaperone p23 89.5 1.4 3.1E-05 36.2 6.5 80 108-197 7-86 (180)
43 KOG2265 Nuclear distribution p 83.7 11 0.00024 31.1 8.8 79 107-196 17-97 (179)
44 KOG1667 Zn2+-binding protein M 78.5 11 0.00024 33.0 7.4 81 110-197 216-296 (320)
45 PF00347 Ribosomal_L6: Ribosom 76.1 5.3 0.00012 27.5 4.1 47 131-193 2-48 (77)
46 PF13349 DUF4097: Domain of un 73.4 27 0.00059 27.0 8.1 79 108-191 65-148 (166)
47 COG5091 SGT1 Suppressor of G2 73.4 1.9 4E-05 38.3 1.4 82 107-195 175-256 (368)
48 KOG3260 Calcyclin-binding prot 72.4 11 0.00024 31.4 5.6 76 111-194 77-153 (224)
49 cd06482 ACD_HspB10 Alpha cryst 69.1 12 0.00026 27.1 4.7 34 161-196 9-42 (87)
50 cd06464 ACD_sHsps-like Alpha-c 66.5 13 0.00028 25.4 4.4 32 117-148 55-87 (88)
51 PF00011 HSP20: Hsp20/alpha cr 65.8 17 0.00036 26.1 5.0 36 118-153 55-91 (102)
52 cd06471 ACD_LpsHSP_like Group 65.5 13 0.00028 26.5 4.3 30 118-147 62-91 (93)
53 PF14913 DPCD: DPCD protein fa 64.7 51 0.0011 27.6 8.1 77 107-195 85-170 (194)
54 PRK10743 heat shock protein Ib 64.6 25 0.00055 27.5 6.1 31 164-196 49-79 (137)
55 cd06469 p23_DYX1C1_like p23_li 63.2 25 0.00053 23.9 5.2 34 118-151 36-70 (78)
56 cd06476 ACD_HspB2_like Alpha c 62.0 29 0.00063 24.7 5.5 33 160-194 7-39 (83)
57 cd06497 ACD_alphaA-crystallin_ 61.8 33 0.0007 24.5 5.8 33 160-194 10-42 (86)
58 cd06477 ACD_HspB3_Like Alpha c 61.1 34 0.00074 24.4 5.8 34 160-195 7-40 (83)
59 cd06470 ACD_IbpA-B_like Alpha- 60.0 24 0.00053 25.2 4.9 35 161-197 12-46 (90)
60 PRK11597 heat shock chaperone 59.7 33 0.00072 27.1 6.0 31 164-196 47-77 (142)
61 cd06472 ACD_ScHsp26_like Alpha 59.3 20 0.00043 25.6 4.3 31 117-147 59-90 (92)
62 cd06478 ACD_HspB4-5-6 Alpha-cr 58.5 41 0.00088 23.7 5.8 32 161-194 8-39 (83)
63 cd06526 metazoan_ACD Alpha-cry 58.0 24 0.00052 24.7 4.5 35 160-196 7-41 (83)
64 PF04972 BON: BON domain; Int 57.3 19 0.00042 23.6 3.7 26 127-152 12-37 (64)
65 cd06481 ACD_HspB9_like Alpha c 55.3 38 0.00083 24.2 5.2 34 160-195 7-40 (87)
66 cd06463 p23_like Proteins cont 54.6 39 0.00086 22.5 5.1 36 117-152 40-76 (84)
67 cd06479 ACD_HspB7_like Alpha c 54.4 33 0.00071 24.4 4.7 33 160-194 8-40 (81)
68 PF12992 DUF3876: Domain of un 53.7 47 0.001 24.5 5.6 41 107-147 24-69 (95)
69 cd00298 ACD_sHsps_p23-like Thi 51.9 34 0.00073 22.1 4.3 32 117-148 47-79 (80)
70 cd06480 ACD_HspB8_like Alpha-c 51.6 32 0.0007 25.1 4.3 30 118-147 58-89 (91)
71 PF01954 DUF104: Protein of un 51.0 15 0.00032 24.9 2.3 17 176-192 3-19 (60)
72 PRK05518 rpl6p 50S ribosomal p 48.4 90 0.0019 25.7 7.0 45 131-192 13-57 (180)
73 cd06498 ACD_alphaB-crystallin_ 48.2 66 0.0014 22.8 5.5 32 161-194 8-39 (84)
74 KOG3591 Alpha crystallins [Pos 45.7 43 0.00092 27.4 4.7 34 120-153 117-152 (173)
75 COG0071 IbpA Molecular chapero 45.7 51 0.0011 25.7 5.0 35 118-152 100-135 (146)
76 cd06475 ACD_HspB1_like Alpha c 45.2 65 0.0014 22.9 5.1 34 160-195 10-43 (86)
77 TIGR03653 arch_L6P archaeal ri 45.1 1.2E+02 0.0026 24.7 7.2 45 131-192 7-51 (170)
78 PF08308 PEGA: PEGA domain; I 43.8 80 0.0017 21.0 5.2 39 111-149 27-67 (71)
79 PRK05498 rplF 50S ribosomal pr 43.0 55 0.0012 26.7 5.0 44 131-192 12-55 (178)
80 TIGR03654 L6_bact ribosomal pr 41.8 65 0.0014 26.2 5.2 44 131-192 11-54 (175)
81 PTZ00027 60S ribosomal protein 41.6 1E+02 0.0022 25.5 6.4 47 131-192 13-59 (190)
82 PTZ00179 60S ribosomal protein 40.5 1E+02 0.0022 25.6 6.2 47 131-192 12-58 (189)
83 cd06466 p23_CS_SGT1_like p23_l 37.4 85 0.0018 21.3 4.6 35 117-151 41-76 (84)
84 PRK10568 periplasmic protein; 37.2 2.2E+02 0.0048 23.6 7.8 26 127-152 73-98 (203)
85 PF05455 GvpH: GvpH; InterPro 33.3 1.6E+02 0.0035 24.3 6.2 39 116-154 134-172 (177)
86 PRK13726 conjugal transfer pil 32.6 1.1E+02 0.0023 25.4 5.2 52 132-194 131-182 (188)
87 cd06467 p23_NUDC_like p23_like 32.3 99 0.0021 21.2 4.3 30 162-192 10-39 (85)
88 COG4004 Uncharacterized protei 31.6 1.1E+02 0.0024 22.6 4.4 34 111-148 26-59 (96)
89 CHL00140 rpl6 ribosomal protei 31.2 2E+02 0.0043 23.5 6.5 44 131-192 12-55 (178)
90 PRK00446 cyaY frataxin-like pr 30.5 74 0.0016 23.8 3.5 17 178-194 29-45 (105)
91 PF13349 DUF4097: Domain of un 30.3 1.8E+02 0.0039 22.3 6.0 30 118-147 118-148 (166)
92 COG0097 RplF Ribosomal protein 29.8 1.9E+02 0.0041 23.9 6.1 47 129-192 10-56 (178)
93 PF01491 Frataxin_Cyay: Fratax 29.5 98 0.0021 23.2 4.1 19 176-194 30-48 (109)
94 TIGR03421 FeS_CyaY iron donor 29.3 77 0.0017 23.6 3.4 17 177-193 26-42 (102)
95 cd00503 Frataxin Frataxin is a 29.3 91 0.002 23.3 3.8 18 176-193 28-45 (105)
96 COG4856 Uncharacterized protei 28.9 2.8E+02 0.006 25.8 7.5 78 109-194 52-135 (403)
97 PF08845 SymE_toxin: Toxin Sym 26.6 90 0.0019 20.8 3.0 21 126-146 35-56 (57)
98 cd06494 p23_NUDCD2_like p23-li 26.5 1.3E+02 0.0029 21.8 4.2 29 162-191 17-45 (93)
99 PF07873 YabP: YabP family; I 26.2 51 0.0011 22.3 1.8 21 129-149 23-43 (66)
100 PF06964 Alpha-L-AF_C: Alpha-L 26.1 1.5E+02 0.0031 23.7 4.8 27 167-194 150-176 (177)
101 KOG3413 Mitochondrial matrix p 25.7 32 0.0007 27.6 0.8 24 169-193 66-89 (156)
102 PF10988 DUF2807: Protein of u 24.0 1E+02 0.0023 24.1 3.6 27 166-194 25-51 (181)
103 KOG3247 Uncharacterized conser 23.7 38 0.00082 31.7 1.0 77 108-196 3-81 (466)
104 PRK11198 LysM domain/BON super 23.6 1.1E+02 0.0023 24.1 3.5 26 127-152 38-63 (147)
105 cd06465 p23_hB-ind1_like p23_l 22.6 2E+02 0.0043 20.9 4.6 35 117-151 43-78 (108)
106 TIGR00251 conserved hypothetic 22.6 2E+02 0.0043 20.8 4.4 38 113-151 1-41 (87)
107 PF05309 TraE: TraE protein; 21.4 1.9E+02 0.004 23.5 4.6 49 132-191 131-179 (187)
108 COG2880 Uncharacterized protei 21.3 8.6 0.00019 26.8 -2.8 15 175-189 4-18 (67)
109 TIGR02856 spore_yqfC sporulati 20.9 74 0.0016 22.9 1.9 23 127-149 39-61 (85)
110 TIGR02892 spore_yabP sporulati 20.2 79 0.0017 22.9 1.9 21 129-149 22-42 (85)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.93 E-value=3.4e-25 Score=174.90 Aligned_cols=115 Identities=16% Similarity=0.338 Sum_probs=88.6
Q ss_pred HHHHHHhhcCCCCCCCCC-CCcceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc------Ccee
Q 028468 88 LNFMDQMTENPFFSGTRG-GLRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED------EESV 159 (208)
Q Consensus 88 ~~~md~l~~~~~~~~~~~-~~~p~~di~E-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~ 159 (208)
...|+++|+..+.....+ +..|++||++ ++++|+|+++|||++++||+|++++|.|+|+|+++.+.++ |+++
T Consensus 13 ~~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~ 92 (137)
T PRK10743 13 AIGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAE 92 (137)
T ss_pred ccCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEEC
Confidence 345566665444322111 3458999995 8999999999999999999999999999999998754433 3456
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcCcc-cCCceEEe
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQV 205 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~~-~~~~~i~I 205 (208)
+.|+|+|.||.+| +.+ +|+|+||||+|++||.+++ .+++.|.|
T Consensus 93 g~F~R~~~LP~~V-d~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 93 RNFERKFQLAENI-HVR--GANLVNGLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred CEEEEEEECCCCc-ccC--cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence 7999999999999 888 4999999999999997433 34555555
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=1.9e-24 Score=171.42 Aligned_cols=97 Identities=14% Similarity=0.332 Sum_probs=81.9
Q ss_pred CcceeeEEE-cCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc------CceeeEEEEEEECCCCCCCCcceE
Q 028468 107 LRRGWDAKE-TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED------EESVRRYTSRIDLPEKLYRTDQIK 179 (208)
Q Consensus 107 ~~p~~di~E-~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~i~ 179 (208)
..|++||+| ++++|+|+++|||++++||+|.+++|.|+|+|+++.+.++ |+.++.|+|+|.||.+| |.+ +
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~v-d~~--~ 107 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENM-EVS--G 107 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCc-ccC--c
Confidence 568999998 4779999999999999999999999999999997654333 34567999999999999 887 7
Q ss_pred EEEeCCEEEEEEeCcCc-ccCCceEEee
Q 028468 180 AEMKNGVLKVTVPKVKE-EERADVFQVK 206 (208)
Q Consensus 180 A~~~nGvL~I~lPK~~~-~~~~~~i~I~ 206 (208)
|+|+||||+|+|||.++ ..+++.|.|+
T Consensus 108 A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 108 ATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred CEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 99999999999999743 3456666664
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.5e-24 Score=167.96 Aligned_cols=98 Identities=39% Similarity=0.653 Sum_probs=85.5
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCc--c------CceeeEEEEEEECCCCCCCCcce
Q 028468 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE--D------EESVRRYTSRIDLPEKLYRTDQI 178 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~--~------e~~~~~f~r~i~LP~~v~d~~~i 178 (208)
..|++||+|++++|+|.++|||++++||+|+++++.|+|+|+++.+.+ . +..++.|.|+|.||..| +++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v-~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc-cccce
Confidence 689999999999999999999999999999999999999999976322 1 34578999999999999 99999
Q ss_pred EEEEeCCEEEEEEeCcCccc-CCceEEe
Q 028468 179 KAEMKNGVLKVTVPKVKEEE-RADVFQV 205 (208)
Q Consensus 179 ~A~~~nGvL~I~lPK~~~~~-~~~~i~I 205 (208)
+|+|+||+|+|+|||.++++ +++.|.|
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred eeEeeCcEEEEEEeccccccccCceeec
Confidence 99999999999999987664 3444444
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.87 E-value=7.7e-22 Score=145.23 Aligned_cols=83 Identities=48% Similarity=0.679 Sum_probs=74.1
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEEEecccCcc--------CceeeEEEEEEECCCCCCCCcceEE
Q 028468 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGED--------EESVRRYTSRIDLPEKLYRTDQIKA 180 (208)
Q Consensus 110 ~~di~E~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~--------e~~~~~f~r~i~LP~~v~d~~~i~A 180 (208)
.+||+|++++|+|.++|||++++||+|++++ +.|+|+|++..+... ++.++.|.|+|.||.++ +.+.|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENA-DADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCC-CHHHCEE
Confidence 3799999999999999999999999999997 499999997654321 34567999999999999 9999999
Q ss_pred EEeCCEEEEEEeC
Q 028468 181 EMKNGVLKVTVPK 193 (208)
Q Consensus 181 ~~~nGvL~I~lPK 193 (208)
.|+||+|+|++||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999998
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.86 E-value=2.8e-21 Score=141.15 Aligned_cols=81 Identities=21% Similarity=0.447 Sum_probs=73.0
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccC-ceeeEEEEEEECCCCCCCCcceEEEE-eCCEEEE
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE-ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 189 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e-~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGvL~I 189 (208)
+|++++++|.|.++|||+++++|+|+++++.|+|+|++....++. ...+.|+|+|.||++| |.++|+|.| +||||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~V-d~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNV-DQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCCEEEE
Confidence 689999999999999999999999999999999999876443332 3356899999999999 999999999 8999999
Q ss_pred EEeC
Q 028468 190 TVPK 193 (208)
Q Consensus 190 ~lPK 193 (208)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.86 E-value=5.6e-21 Score=142.26 Aligned_cols=93 Identities=40% Similarity=0.711 Sum_probs=74.4
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc------CceeeEEEEEEECCCCCCCCcceEEEEeCC
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED------EESVRRYTSRIDLPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~------e~~~~~f~r~i~LP~~v~d~~~i~A~~~nG 185 (208)
||.+++++|.|.++|||+.+++|+|+++++.|+|+|++.....+ +...+.|.++|.||.++ |.+.|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEecCC
Confidence 78999999999999999999999999999999999998822222 23457999999999999 999999999999
Q ss_pred EEEEEEeCcCcccC--CceEEe
Q 028468 186 VLKVTVPKVKEEER--ADVFQV 205 (208)
Q Consensus 186 vL~I~lPK~~~~~~--~~~i~I 205 (208)
+|+|++||....+. ++.|.|
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-E
T ss_pred EEEEEEEccccccCCCCeEEEe
Confidence 99999999987754 455554
No 7
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.85 E-value=5.8e-21 Score=140.55 Aligned_cols=82 Identities=34% Similarity=0.598 Sum_probs=73.8
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc----------CceeeEEEEEEECCCCCCCCcceE
Q 028468 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED----------EESVRRYTSRIDLPEKLYRTDQIK 179 (208)
Q Consensus 110 ~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~v~d~~~i~ 179 (208)
.+||+|++++|+|.++|||+++++|+|.++++.|+|+|+++...++ ++..++|.|+|.|| ++ +.+.|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v-~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NV-DEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CC-CHHHCE
Confidence 5899999999999999999999999999999999999998753221 23567899999999 68 899999
Q ss_pred EEEeCCEEEEEEeC
Q 028468 180 AEMKNGVLKVTVPK 193 (208)
Q Consensus 180 A~~~nGvL~I~lPK 193 (208)
|+|+||+|+|++||
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999998
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.85 E-value=6.2e-21 Score=137.95 Aligned_cols=79 Identities=18% Similarity=0.419 Sum_probs=73.0
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEE-eCCEEEEE
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVT 190 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGvL~I~ 190 (208)
||.|++++|.|.++|||++++||+|+++++.|+|+|+++.+. +..+++|+|+|.||.+| |++.|+|.| +||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~v-d~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDV-DPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCc-CHHHeEEEecCCCEEEEE
Confidence 689999999999999999999999999999999999986443 45689999999999999 999999997 99999999
Q ss_pred EeC
Q 028468 191 VPK 193 (208)
Q Consensus 191 lPK 193 (208)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.85 E-value=8.8e-21 Score=137.61 Aligned_cols=81 Identities=19% Similarity=0.413 Sum_probs=72.0
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEE-eCCEEEE
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKV 189 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGvL~I 189 (208)
+|.+++++|.|.++|||+++++|+|+++++.|+|+|++....++ ....+.|.|+|.||.+| |.++|+|.| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEECCCCEEEE
Confidence 47889999999999999999999999999999999987643332 23356899999999999 999999999 7999999
Q ss_pred EEeC
Q 028468 190 TVPK 193 (208)
Q Consensus 190 ~lPK 193 (208)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.85 E-value=1.3e-20 Score=137.04 Aligned_cols=81 Identities=17% Similarity=0.385 Sum_probs=72.2
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEEe-CCEEEEE
Q 028468 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 190 (208)
Q Consensus 113 i~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~~-nGvL~I~ 190 (208)
+.+++++|.|.++|||++++||+|+++++.|+|+|++....++ ....+.|.|+|.||.+| |.++|+|+|+ ||||+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADV-DPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCC-ChHHcEEEeCCCCEEEEE
Confidence 5778999999999999999999999999999999987654333 33467899999999999 9999999995 9999999
Q ss_pred EeCc
Q 028468 191 VPKV 194 (208)
Q Consensus 191 lPK~ 194 (208)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 11
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.84 E-value=3.2e-20 Score=136.37 Aligned_cols=82 Identities=18% Similarity=0.501 Sum_probs=72.6
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-------CceeeEEEEEEECCCCCCCCcceEE
Q 028468 109 RGWDAKETD-DALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-------EESVRRYTSRIDLPEKLYRTDQIKA 180 (208)
Q Consensus 109 p~~di~E~~-d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~i~A 180 (208)
|++||+|++ ++|+|.++|||+++++|+|.++++.|+|+|+++...++ +...+.|.|+|.||.++ +. ++|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~v-d~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHV-KV--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCc-eE--Cee
Confidence 579999975 99999999999999999999999999999998776532 23468999999999998 65 489
Q ss_pred EEeCCEEEEEEeC
Q 028468 181 EMKNGVLKVTVPK 193 (208)
Q Consensus 181 ~~~nGvL~I~lPK 193 (208)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=3e-20 Score=135.75 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=73.1
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEEe-CCEEE
Q 028468 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLK 188 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~~-nGvL~ 188 (208)
-||+|++++|.|.++|||+++++|+|+++++.|+|+|++...... ....+.|+|+|.||.+| |.++|+|.|+ ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~v-d~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGV-DPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCC-CHHHcEEEECCCCeEE
Confidence 489999999999999999999999999999999999998654322 23457999999999999 9999999996 99999
Q ss_pred EEEe
Q 028468 189 VTVP 192 (208)
Q Consensus 189 I~lP 192 (208)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=7.3e-20 Score=132.90 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=70.9
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEEe-CCEEEEE
Q 028468 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVT 190 (208)
Q Consensus 113 i~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~~-nGvL~I~ 190 (208)
+.-++++|.|.++|||++++||+|+++++.|+|+|++....+. +...+.|+|+|.||.+| |++.|+|.|+ ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~v-d~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDV-DPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCC-ChhhEEEEecCCCEEEEE
Confidence 3456789999999999999999999999999999998654332 45577899999999999 9999999995 9999999
Q ss_pred EeC
Q 028468 191 VPK 193 (208)
Q Consensus 191 lPK 193 (208)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.81 E-value=3.2e-19 Score=129.53 Aligned_cols=78 Identities=21% Similarity=0.395 Sum_probs=69.6
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCc-cCceeeEEEEEEECCCCCCCCcceEEEE-eCCEEEEEE
Q 028468 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE-DEESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLKVTV 191 (208)
Q Consensus 114 ~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGvL~I~l 191 (208)
.|++++|.|+++|||++++||+|+++++.|+|+|++..+.+ .+...+.|+|+|.||.+| +.+.|+|.| +||||+|+.
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~V-d~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGV-EHKDLSAMLCHDGILVVET 81 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCc-chheEEEEEcCCCEEEEEe
Confidence 46789999999999999999999999999999999876432 234567999999999999 999999998 899999997
Q ss_pred e
Q 028468 192 P 192 (208)
Q Consensus 192 P 192 (208)
|
T Consensus 82 ~ 82 (83)
T cd06477 82 K 82 (83)
T ss_pred c
Confidence 6
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.80 E-value=3.9e-19 Score=128.53 Aligned_cols=76 Identities=28% Similarity=0.609 Sum_probs=69.3
Q ss_pred CCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCc-cCceeeEEEEEEECCCCCCCCcceEEEEeC-CEEEEEEeC
Q 028468 117 DDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE-DEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLKVTVPK 193 (208)
Q Consensus 117 ~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~-~e~~~~~f~r~i~LP~~v~d~~~i~A~~~n-GvL~I~lPK 193 (208)
+++|.|.++||||++++|+|+++++.|+|+|+++...+ .+...+.|.|+|.||.+| |.+.++|.|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCcEEEEEecC
Confidence 36999999999999999999999999999999876543 345678999999999999 99999999998 999999997
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.80 E-value=3.7e-19 Score=130.20 Aligned_cols=78 Identities=24% Similarity=0.565 Sum_probs=69.2
Q ss_pred EcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccC-----ceeeEEEEEEECCCCCCCCcceEEEE-eCCEEE
Q 028468 115 ETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDE-----ESVRRYTSRIDLPEKLYRTDQIKAEM-KNGVLK 188 (208)
Q Consensus 115 E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e-----~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGvL~ 188 (208)
+.+++|.|.++|||++++||+|+++++.|+|+|++....+.+ ...+.|.|+|.||.+| |.+.|+|.| +||||+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~V-d~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHV-DPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCc-ChHHeEEEeCCCceEE
Confidence 456899999999999999999999999999999976543322 2458999999999999 999999999 999999
Q ss_pred EEEeC
Q 028468 189 VTVPK 193 (208)
Q Consensus 189 I~lPK 193 (208)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 17
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=1.8e-18 Score=124.11 Aligned_cols=81 Identities=44% Similarity=0.743 Sum_probs=73.8
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-------CceeeEEEEEEECCCCCCCCcceEEEEeC
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-------EESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-------e~~~~~f~r~i~LP~~v~d~~~i~A~~~n 184 (208)
++.|++++|.|.++|||+++++|+|++.++.|.|+|++...... +...+.|.++|.||..+ +.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV-DPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc-CHHHcEEEEeC
Confidence 47899999999999999999999999999999999998865442 34578999999999999 99999999999
Q ss_pred CEEEEEEeC
Q 028468 185 GVLKVTVPK 193 (208)
Q Consensus 185 GvL~I~lPK 193 (208)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.78 E-value=1.7e-18 Score=126.83 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=68.1
Q ss_pred cCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc----CceeeEEEEEEECCCCCCCCcceEEEEeCC-EEEEE
Q 028468 116 TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED----EESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLKVT 190 (208)
Q Consensus 116 ~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~----e~~~~~f~r~i~LP~~v~d~~~i~A~~~nG-vL~I~ 190 (208)
++++|+|.++|||+++++|+|+++++.|+|+|+++...+. ++.++.|.|+|.||.+| |.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGV-DEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCc-ChHHcEEEEcCCCEEEEe
Confidence 4688999999999999999999999999999998764432 45678999999999999 999999999777 99998
Q ss_pred Ee
Q 028468 191 VP 192 (208)
Q Consensus 191 lP 192 (208)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 77
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.7e-19 Score=146.69 Aligned_cols=165 Identities=35% Similarity=0.578 Sum_probs=116.8
Q ss_pred cccccccCccccccccCCCCCCCCccccccccCCCCcCCCCCCCCCCCC-CCCChhHHHHHHHHHHhhcCCCC-CC----
Q 028468 29 TSASRFFNTNAVHQYDDGGDDRDLDIDRRSARSFPRRRDDFFSGNVFDP-FSPTRSLSQVLNFMDQMTENPFF-SG---- 102 (208)
Q Consensus 29 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~d~~dp-f~~~r~l~~~~~~md~l~~~~~~-~~---- 102 (208)
.-..|..||++...+++.. .+..+..+.+.|+.-.+|+ |.+......+. |+....+.. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~d~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (196)
T KOG0710|consen 13 IEFERLSNTKKGEEAEDLG-----------KTSMSKLRLSGFRPELLDPWFEPLELPIPPN---DSVSAEPLSLRVRKPE 78 (196)
T ss_pred cccchhhhhhccchhhhhc-----------ccccccccccccccccccccccccccccccc---chhhcccccccccccc
Confidence 4567888888865554422 1112334444443445566 65544433222 222222211 00
Q ss_pred CCCCCcceeeEEEcCCeEEEEEEcCCCCccceEEEEECC-EEEEEEEecccCcc----------CceeeEEEEEEECCCC
Q 028468 103 TRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQN-TLVIRGEGGKEGED----------EESVRRYTSRIDLPEK 171 (208)
Q Consensus 103 ~~~~~~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~-~L~I~g~~~~~~~~----------e~~~~~f~r~i~LP~~ 171 (208)
....+.+.|+|.|..++|.+.++|||+++++|+|.++++ +|+|+|++..+.++ ++..+.|.+.+.||++
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 111467889999999999999999999999999999987 79999998876543 4456799999999999
Q ss_pred CCCCcceEEEEeCCEEEEEEeCcCcc-cCCceEEeecC
Q 028468 172 LYRTDQIKAEMKNGVLKVTVPKVKEE-ERADVFQVKVD 208 (208)
Q Consensus 172 v~d~~~i~A~~~nGvL~I~lPK~~~~-~~~~~i~I~IE 208 (208)
+ +.+.|+|.|+||||+|++||..+. +++++..|.|.
T Consensus 159 v-~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 159 V-DVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred c-cHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 9 999999999999999999999764 45677777763
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.67 E-value=7.1e-16 Score=113.79 Aligned_cols=79 Identities=14% Similarity=0.385 Sum_probs=70.6
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEEe-CCEEEEEE
Q 028468 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEMK-NGVLKVTV 191 (208)
Q Consensus 114 ~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~~-nGvL~I~l 191 (208)
..++++|.|.+++.||++|||+|++.++.|+|+|+++....+ ....+.|+|+|.||.+| |.+.|+|.+. ||+|+|.+
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~V-d~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEV-DPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCC-CchhEEEEeCCCCeEEEEc
Confidence 456789999999999999999999999999999998865433 34578999999999999 9999999996 99999999
Q ss_pred eC
Q 028468 192 PK 193 (208)
Q Consensus 192 PK 193 (208)
|.
T Consensus 90 P~ 91 (91)
T cd06480 90 PQ 91 (91)
T ss_pred CC
Confidence 83
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.56 E-value=4.7e-14 Score=97.45 Aligned_cols=80 Identities=39% Similarity=0.700 Sum_probs=72.8
Q ss_pred EEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 113 AKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 113 i~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
+.++++.|.|++++||+.+++|+|.++++.|.|+|......+.+...+.|.+.+.||..+ +++.++|.+.+|+|.|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV-DPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCc-CHHHCEEEEECCEEEEEEc
Confidence 367889999999999999999999999999999998876554455678999999999999 9999999999999999999
Q ss_pred C
Q 028468 193 K 193 (208)
Q Consensus 193 K 193 (208)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.9e-14 Score=115.95 Aligned_cols=97 Identities=18% Similarity=0.401 Sum_probs=83.6
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCcc-CceeeEEEEEEECCCCCCCCcceEEEE-eCCE
Q 028468 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGED-EESVRRYTSRIDLPEKLYRTDQIKAEM-KNGV 186 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~-e~~~~~f~r~i~LP~~v~d~~~i~A~~-~nGv 186 (208)
...++..++++|.|.+|+..|++|+|+|++.++.|.|+|++++..++ ..-.+.|.|++.||.+| |++.|++.+ .+|+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~v-dp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDV-DPTSVTSTLSSDGV 141 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCC-ChhheEEeeCCCce
Confidence 34678889999999999999999999999999999999999877433 44578999999999999 999999999 9999
Q ss_pred EEEEEeCcCcccC-CceEEee
Q 028468 187 LKVTVPKVKEEER-ADVFQVK 206 (208)
Q Consensus 187 L~I~lPK~~~~~~-~~~i~I~ 206 (208)
|+|.+||...... .+.|.|+
T Consensus 142 LtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 142 LTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEEccCCCCcCccceEEeEe
Confidence 9999999875543 4455554
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.29 E-value=1.8e-11 Score=86.53 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=64.9
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeC
Q 028468 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 114 ~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK 193 (208)
.++++.+.|.+++||+++++++|.++++.|.|++. .|...+.||..| +++..+|.+.+|.|.|+++|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~------------~~~~~~~l~~~I-~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFP------------PYLFELDLAAPI-DDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCC------------CEEEEEeCcccc-cccccEEEEeCCEEEEEEEe
Confidence 57889999999999999999999999999999881 588999999999 99999999999999999999
Q ss_pred cCc
Q 028468 194 VKE 196 (208)
Q Consensus 194 ~~~ 196 (208)
.++
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.02 E-value=3.1e-09 Score=74.79 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=67.2
Q ss_pred EEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeC
Q 028468 114 KETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 114 ~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK 193 (208)
.++++.+.|.+.+||..+++++|.++++.|.|++... ....|...+.|+..| +++..++.+++|.|.|+|+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~l~i~L~K 73 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG-------GGKEYLLEGELFGPI-DPEESKWTVEDRKIEITLKK 73 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC-------CCCceEEeeEccCcc-chhhcEEEEeCCEEEEEEEE
Confidence 5778999999999999999999999999999999743 124788889999999 99999999999999999999
Q ss_pred cCc
Q 028468 194 VKE 196 (208)
Q Consensus 194 ~~~ 196 (208)
.++
T Consensus 74 ~~~ 76 (84)
T cd06463 74 KEP 76 (84)
T ss_pred CCC
Confidence 765
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.99 E-value=4.2e-09 Score=86.08 Aligned_cols=78 Identities=29% Similarity=0.557 Sum_probs=63.8
Q ss_pred CcceeeEEEcCC-eEEEEEEcCCCCccc-eEEEEEC--CEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEE
Q 028468 107 LRRGWDAKETDD-ALNLSIDMPGLGKED-VRVSLEQ--NTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM 182 (208)
Q Consensus 107 ~~p~~di~E~~d-~y~l~vdLPG~~ked-I~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~ 182 (208)
..+.+++.+.++ .++|.++|||+++++ |+|.++. +.|+|+.. .+|.+++.||.. +++.++|.|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-----------~~~~krv~L~~~--~~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-----------EKYLKRVALPWP--DPEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-----------CceEeeEecCCC--ccceeeEEE
Confidence 456789998877 699999999999888 9999985 55666543 257789999976 478999999
Q ss_pred eCCEEEEEEeCcCcc
Q 028468 183 KNGVLKVTVPKVKEE 197 (208)
Q Consensus 183 ~nGvL~I~lPK~~~~ 197 (208)
+||||+|+|-+.++.
T Consensus 157 nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 157 NNGILEIRIRRTEES 171 (177)
T ss_pred eCceEEEEEeecCCC
Confidence 999999999887554
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.81 E-value=3.4e-08 Score=70.47 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.3
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEE
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~l 191 (208)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|.-.+.|+..| +++..++.+.+|.|.|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~vei~L 72 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPI-DPEQSKVSVLPTKVEITL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEeccccccc-CchhcEEEEeCeEEEEEE
Confidence 568899999999999999999999999999999988642 123688899999999 899999999999999999
Q ss_pred eCcCc
Q 028468 192 PKVKE 196 (208)
Q Consensus 192 PK~~~ 196 (208)
.|.++
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99754
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.55 E-value=3.6e-06 Score=58.53 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=65.9
Q ss_pred ceeeEEEcCCeEEEEEEcCCC--CccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCE
Q 028468 109 RGWDAKETDDALNLSIDMPGL--GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 186 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~--~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGv 186 (208)
|.+++.++++.+.|.+.+++. .+++|+|.++++.|.|+...... ..|.-.+.|...| +++..++.+.++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I-~~~~s~~~~~~~~ 72 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEI-DPDESTWKVKDNK 72 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-B-ECCCEEEEEETTE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeE-cchhcEEEEECCE
Confidence 568999999999999999665 59999999999999999764322 4788888999999 9999999999999
Q ss_pred EEEEEeC
Q 028468 187 LKVTVPK 193 (208)
Q Consensus 187 L~I~lPK 193 (208)
|.|+|.|
T Consensus 73 i~i~L~K 79 (79)
T PF04969_consen 73 IEITLKK 79 (79)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 9999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.24 E-value=1.8e-05 Score=59.49 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=68.3
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEE
Q 028468 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~ 188 (208)
|+++++++.+.+.|.+.+||. ++++|.++.+.|.|++.... ....|.-.+.|...| +++..+..+.++.|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~------~~~~y~~~~~L~~~I-~pe~s~~~v~~~kve 71 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG------GGKKYEFDLEFYKEI-DPEESKYKVTGRQIE 71 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC------CCeeEEEEeEhhhhc-cccccEEEecCCeEE
Confidence 468899999999999999998 88999999999999985321 123577888999999 999999999999999
Q ss_pred EEEeCcC
Q 028468 189 VTVPKVK 195 (208)
Q Consensus 189 I~lPK~~ 195 (208)
|+|.|.+
T Consensus 72 I~L~K~~ 78 (108)
T cd06465 72 FVLRKKE 78 (108)
T ss_pred EEEEECC
Confidence 9999976
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.11 E-value=3.5e-05 Score=55.27 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=65.8
Q ss_pred eEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEE
Q 028468 112 DAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 112 di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~l 191 (208)
|++++++.+.|.+.++|+.+++++|.++++.|.+++.... ...|.-.+.|...| ++++.+.....+-+.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~-------~~~y~~~~~L~~~I-~p~~s~~~v~~~kiei~L 72 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS-------GNDYSLKLHLLHPI-VPEQSSYKILSTKIEIKL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC-------CCcEEEeeecCcee-cchhcEEEEeCcEEEEEE
Confidence 5678899999999999999999999999999999986421 12577788999999 899888888899999999
Q ss_pred eCcC
Q 028468 192 PKVK 195 (208)
Q Consensus 192 PK~~ 195 (208)
.|..
T Consensus 73 ~K~~ 76 (84)
T cd06489 73 KKTE 76 (84)
T ss_pred EcCC
Confidence 9974
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.01 E-value=2.8e-05 Score=68.66 Aligned_cols=65 Identities=26% Similarity=0.518 Sum_probs=59.1
Q ss_pred CCeEEEEEEcCCC-CccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEE--eCCEEEEEEe
Q 028468 117 DDALNLSIDMPGL-GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM--KNGVLKVTVP 192 (208)
Q Consensus 117 ~d~y~l~vdLPG~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~--~nGvL~I~lP 192 (208)
.+.++|+|+|||+ +..+|+|.|.+..|.|..... .|.-.+.||..| +.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V-~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPV-DEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcc-cCCCceEEEccCCCEEEEEEE
Confidence 4789999999999 889999999999999998631 688899999999 999999999 6689999998
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.96 E-value=0.00018 Score=52.25 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=66.7
Q ss_pred eeeEEEcCCeEEEEEEcCCCCc---cceEEEEECCEEEEEEEecccCccCceeeEEEEEEE-CCCCCCCCcceEEEEeCC
Q 028468 110 GWDAKETDDALNLSIDMPGLGK---EDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRID-LPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 110 ~~di~E~~d~y~l~vdLPG~~k---edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~i~A~~~nG 185 (208)
.+++.++++.+.|.+.+|+..+ ++++|.++.+.|.|++.... ...|.-.+. |-..| +++..+..+..+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~-------~~~~~~~~~~L~~~I-~~e~s~~~~~~~ 74 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN-------GKNYRFTINRLLKKI-DPEKSSFKVKTD 74 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC-------CcEEEEEehHhhCcc-CccccEEEEeCC
Confidence 4788999999999999999976 99999999999999985311 125666665 99999 999999999999
Q ss_pred EEEEEEeCcCc
Q 028468 186 VLKVTVPKVKE 196 (208)
Q Consensus 186 vL~I~lPK~~~ 196 (208)
-+.|+|.|.++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.89 E-value=0.00012 Score=52.15 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=62.1
Q ss_pred eeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeC-CEEE
Q 028468 111 WDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKN-GVLK 188 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~n-GvL~ 188 (208)
+.+.++++.+.|.+.+| ++.+++|+|.+.++.|.|+.... .+.-...|...| +++.....+.+ ..|.
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~----------~~~l~~~L~~~I-~~~~s~w~~~~~~~v~ 69 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG----------EPLLDGELYAKV-KVDESTWTLEDGKLLE 69 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC----------CceEcCcccCce-eEcCCEEEEeCCCEEE
Confidence 35788999999999997 78999999999999999987520 122223688999 99999999999 9999
Q ss_pred EEEeCcCc
Q 028468 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|+|+|.++
T Consensus 70 i~L~K~~~ 77 (85)
T cd06467 70 ITLEKRNE 77 (85)
T ss_pred EEEEECCC
Confidence 99999854
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.86 E-value=0.00027 Score=51.27 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=68.0
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEE
Q 028468 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVT 190 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~ 190 (208)
+|++++++.+.|.+.+.|+.++++++.++++.|.|...... ...|.-.+.|-..| +++..+.....+-+.|+
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I-~~~~s~~~v~~~kvei~ 74 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVI-DVEKSSVNMLPTKVEIK 74 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceE-ChhHcEEEecCcEEEEE
Confidence 68999999999999999999999999999999998875432 12588888999999 89998889999999999
Q ss_pred EeCcCc
Q 028468 191 VPKVKE 196 (208)
Q Consensus 191 lPK~~~ 196 (208)
+.|.++
T Consensus 75 L~K~~~ 80 (87)
T cd06488 75 LRKAEP 80 (87)
T ss_pred EEeCCC
Confidence 999753
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.79 E-value=0.00033 Score=50.49 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=61.1
Q ss_pred eeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCC-EEE
Q 028468 111 WDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLK 188 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nG-vL~ 188 (208)
+++.++.+.+.|.+.+| |+.+++|+|.++.+.|.|..... . .+ -.-.|...| +++.-.-.+++| .|.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~-~--------~~-~~g~L~~~I-~~d~Stw~i~~~~~l~ 69 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ-A--------PL-LEGKLYSSI-DHESSTWIIKENKSLE 69 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC-C--------eE-EeCcccCcc-cccCcEEEEeCCCEEE
Confidence 35788999999999996 99999999999999999976311 0 12 233788999 999988888777 799
Q ss_pred EEEeCcCcc
Q 028468 189 VTVPKVKEE 197 (208)
Q Consensus 189 I~lPK~~~~ 197 (208)
|+|.|.++.
T Consensus 70 i~L~K~~~~ 78 (85)
T cd06493 70 VSLIKKDEG 78 (85)
T ss_pred EEEEECCCC
Confidence 999998643
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.55 E-value=0.0011 Score=49.10 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=63.9
Q ss_pred CcceeeEEEcCCeEEEEEEcC-CCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCC
Q 028468 107 LRRGWDAKETDDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNG 185 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nG 185 (208)
..+.+.+.++.+.+.|.+.+| |..++||+|.+..+.|.|..... .-+.. .|...| +++.-...+++|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~---------~~l~G--~L~~~I-~~destWtled~ 71 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ---------EVLKG--KLFDSV-VADECTWTLEDR 71 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE---------EEEcC--cccCcc-CcccCEEEEECC
Confidence 356689999999999999998 89999999999999999986310 01111 689999 999999999888
Q ss_pred E-EEEEEeCcCc
Q 028468 186 V-LKVTVPKVKE 196 (208)
Q Consensus 186 v-L~I~lPK~~~ 196 (208)
- |.|.|.|...
T Consensus 72 k~l~I~L~K~~~ 83 (93)
T cd06494 72 KLIRIVLTKSNR 83 (93)
T ss_pred cEEEEEEEeCCC
Confidence 5 8999999753
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.41 E-value=0.0034 Score=47.43 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEE
Q 028468 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~ 188 (208)
|.+++.+..+.+.|+|.+|+ .++++|.++++.|.++|... . ...|.-.+.|=..| +++..+.....--+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-~------g~~y~~~l~l~~~I-~pe~Sk~~v~~r~ve 71 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-D------NVKIYNEIELYDRV-DPNDSKHKRTDRSIL 71 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-C------CcEEEEEEEeeccc-CcccCeEEeCCceEE
Confidence 56889999999999999998 58999999999999999532 1 12466778898999 899877777666788
Q ss_pred EEEeCcCc
Q 028468 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|.|.|.++
T Consensus 72 ~~L~K~~~ 79 (106)
T cd00237 72 CCLRKGKE 79 (106)
T ss_pred EEEEeCCC
Confidence 89999754
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.83 E-value=0.0086 Score=54.05 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=68.4
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEE
Q 028468 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLK 188 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~ 188 (208)
...|++++++.++|.|.+.|+.++++.|.++++.|.|+...... ..|.-.+.|-..| +++..+....-.-+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~-------~~y~~~~~L~~~I-~p~~s~~~v~~~Kie 228 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE-------DAYHLQPRLFGKI-IPDKCKYEVLSTKIE 228 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC-------cceeecccccccc-cccccEEEEecceEE
Confidence 56799999999999999999999999999999999998754321 2466678899999 899999999888999
Q ss_pred EEEeCcCc
Q 028468 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|+|.|..+
T Consensus 229 i~l~K~~~ 236 (356)
T PLN03088 229 IRLAKAEP 236 (356)
T ss_pred EEEecCCC
Confidence 99988753
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.59 E-value=0.032 Score=40.51 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=57.1
Q ss_pred EEEcCCeEEEEEEcC-C--CCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCC-EEE
Q 028468 113 AKETDDALNLSIDMP-G--LGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNG-VLK 188 (208)
Q Consensus 113 i~E~~d~y~l~vdLP-G--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nG-vL~ 188 (208)
+.++.+...|.+.+| | ....+|+|.++.+.|.|...... --+. -.|...| +++.-.-.+++| .|.
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~--------~~i~--G~L~~~V-~~des~Wtled~~~l~ 71 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP--------PIID--GELYNEV-KVEESSWLIEDGKVVT 71 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc--------eEEe--CcccCcc-cccccEEEEeCCCEEE
Confidence 456778899999996 3 78999999999999998764211 0122 2688899 999999999986 899
Q ss_pred EEEeCcCc
Q 028468 189 VTVPKVKE 196 (208)
Q Consensus 189 I~lPK~~~ 196 (208)
|+|-|..+
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99999854
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.51 E-value=0.056 Score=39.13 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=57.8
Q ss_pred eeEEEcCCeEEEEEEcCC--CCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEe--CCE
Q 028468 111 WDAKETDDALNLSIDMPG--LGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMK--NGV 186 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLPG--~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~--nGv 186 (208)
+|++++++.++|.+...+ .+++++.+....+.|.|+.... . ..|...+.|=..| +++. +..+. -|-
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~-------~~~~~~~~L~~~I-~~~~-~~~~~~~~~K 70 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-D-------KSYLLHLDLSNEV-QWPC-EVRISTETGK 70 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-C-------ceEEEeeeccccC-CCCc-EEEEcccCce
Confidence 478999999999999885 5566666776778899987543 1 2477788898888 7664 55554 789
Q ss_pred EEEEEeCcCc
Q 028468 187 LKVTVPKVKE 196 (208)
Q Consensus 187 L~I~lPK~~~ 196 (208)
++|++.|.++
T Consensus 71 VEI~L~K~e~ 80 (87)
T cd06490 71 IELVLKKKEP 80 (87)
T ss_pred EEEEEEcCCC
Confidence 9999999754
No 40
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.50 E-value=0.012 Score=48.52 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=62.7
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEE
Q 028468 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 187 (208)
Q Consensus 108 ~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL 187 (208)
...+|+++++..++|.+-.+|+.++||.|.+.+++|.|..+.... ..|.-...|-..| .++..+-+.----+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g-------~~~~l~~~L~~~I-~pe~~s~k~~stKV 74 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG-------SEYNLQLKLYHEI-IPEKSSFKVFSTKV 74 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc-------hhhhhhHHhcccc-cccceeeEeeeeeE
Confidence 456899999999999999999999999999999999998875422 1344445577777 67777777666777
Q ss_pred EEEEeCc
Q 028468 188 KVTVPKV 194 (208)
Q Consensus 188 ~I~lPK~ 194 (208)
+|+|+|.
T Consensus 75 EI~L~K~ 81 (196)
T KOG1309|consen 75 EITLAKA 81 (196)
T ss_pred EEEeccc
Confidence 8888884
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.47 E-value=0.072 Score=40.02 Aligned_cols=81 Identities=12% Similarity=0.274 Sum_probs=62.9
Q ss_pred CcceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeC
Q 028468 107 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~n 184 (208)
....|.+.++.+.+.|++.+| |. +..+|+|.+..+.|.|........ .--+.. .|+..| +++.-...+++
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~-----~~~i~G--~L~~~V-~~des~Wtled 74 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE-----KVLMEG--EFTHKI-NTENSLWSLEP 74 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC-----ceEEeC--cccCcc-cCccceEEEeC
Confidence 456788999999999999999 54 578999999999999887521110 001222 588999 99999999999
Q ss_pred C-EEEEEEeCcC
Q 028468 185 G-VLKVTVPKVK 195 (208)
Q Consensus 185 G-vL~I~lPK~~ 195 (208)
| .|.|+|-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 6 5899999974
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=1.4 Score=36.21 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=60.3
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEE
Q 028468 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVL 187 (208)
Q Consensus 108 ~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL 187 (208)
.|.+-+.+..+.++|++.++ ...+++|.++...|+++|..... ...|...|.|=..| +++..+-+-. +-+
T Consensus 7 ~p~v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d------~~~~~~~ief~~eI-dpe~sk~k~~-~r~ 76 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGAD------NHKYENEIEFFDEI-DPEKSKHKRT-SRS 76 (180)
T ss_pred CCcchhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCC------ceeeEEeeehhhhc-CHhhcccccc-ceE
Confidence 46677888899999999998 55677788888899999986432 23677889998999 8998777766 555
Q ss_pred EEEEeCcCcc
Q 028468 188 KVTVPKVKEE 197 (208)
Q Consensus 188 ~I~lPK~~~~ 197 (208)
...++++++.
T Consensus 77 if~i~~K~e~ 86 (180)
T KOG3158|consen 77 IFCILRKKEL 86 (180)
T ss_pred EEEEEEcccc
Confidence 5555555443
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=83.71 E-value=11 Score=31.09 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=60.5
Q ss_pred CcceeeEEEcCCeEEEEEEcC-CC-CccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeC
Q 028468 107 LRRGWDAKETDDALNLSIDMP-GL-GKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKN 184 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLP-G~-~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~n 184 (208)
..+.+.+..+=..+.|.|.+| |+ +..+|.+.+....|.|.-..... --.=.|...| +.+.....+++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~----------ildG~L~~~v-k~des~WtiEd 85 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPP----------ILDGELSHSV-KVDESTWTIED 85 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCc----------eecCcccccc-ccccceEEecC
Confidence 567788888889999999887 77 78899999998888877653321 1112477888 89999999999
Q ss_pred CEEEEEEeCcCc
Q 028468 185 GVLKVTVPKVKE 196 (208)
Q Consensus 185 GvL~I~lPK~~~ 196 (208)
|.+.|++-++..
T Consensus 86 ~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 86 GKMIVILLKKSN 97 (179)
T ss_pred CEEEEEEeeccc
Confidence 988887766544
No 44
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=78.52 E-value=11 Score=33.05 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=68.8
Q ss_pred eeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEE
Q 028468 110 GWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKV 189 (208)
Q Consensus 110 ~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I 189 (208)
..|+..++..++|.|+.-|.-++.-.|..++..|.|....... ..+|...+.|=.-| ++++..+.|-.--.+|
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~g------na~fd~d~kLwgvv-nve~s~v~m~~tkVEI 288 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFG------NASFDLDYKLWGVV-NVEESSVVMGETKVEI 288 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCC------Cceeeccceeeeee-chhhceEEeecceEEE
Confidence 4589999999999999999999999999999999998876422 24788888887777 8999999999999999
Q ss_pred EEeCcCcc
Q 028468 190 TVPKVKEE 197 (208)
Q Consensus 190 ~lPK~~~~ 197 (208)
+|+|.++-
T Consensus 289 sl~k~ep~ 296 (320)
T KOG1667|consen 289 SLKKAEPG 296 (320)
T ss_pred EEeccCCC
Confidence 99998653
No 45
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=76.07 E-value=5.3 Score=27.45 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=34.7
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeC
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK 193 (208)
++.|+|+++++.+.++|... ..++.||..+ .++...+++.+.+....
T Consensus 2 P~gV~v~~~~~~i~v~G~~g------------~l~~~~~~~v----~v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG------------ELSRPIPPGV----KVEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETTEEEEESSSS------------EEEEEETTTE----EEEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE------------eEEEECCCCe----eEEEEcCCCceEEEECc
Confidence 57899999999999999642 3457778765 45555778877777653
No 46
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=73.37 E-value=27 Score=27.05 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=50.0
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccC-ccCc----eeeEEEEEEECCCCCCCCcceEEEE
Q 028468 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEG-EDEE----SVRRYTSRIDLPEKLYRTDQIKAEM 182 (208)
Q Consensus 108 ~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~-~~e~----~~~~f~r~i~LP~~v~d~~~i~A~~ 182 (208)
...+.|...++ ..+++.. ..+.++++.++++|.|+.+..... .... ....-.-.|.||... ..+.++..-
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~-~l~~i~i~~ 139 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDY-KLDKIDIKT 139 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCC-ceeEEEEEe
Confidence 34467777554 3444444 222688999999999998722110 0100 012344568899987 678999999
Q ss_pred eCCEEEEEE
Q 028468 183 KNGVLKVTV 191 (208)
Q Consensus 183 ~nGvL~I~l 191 (208)
.+|-+.|.=
T Consensus 140 ~~G~i~i~~ 148 (166)
T PF13349_consen 140 SSGDITIED 148 (166)
T ss_pred ccccEEEEc
Confidence 999888753
No 47
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.37 E-value=1.9 Score=38.30 Aligned_cols=82 Identities=26% Similarity=0.235 Sum_probs=60.7
Q ss_pred CcceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCE
Q 028468 107 LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGV 186 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGv 186 (208)
....|+.-++.....|-+.-|-+++|+|.+-+++|+|.|+-+.... .-.+.-.+.|-..| .++...-+.--.+
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~------~~~~~~~~~Ly~ev-~P~~~s~k~fsK~ 247 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL------RLWNDITISLYKEV-YPDIRSIKSFSKR 247 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeecccc------chHHHhhhhhhhhc-Ccchhhhhhcchh
Confidence 3455788889999999999999999999999999999999864322 12334456666777 6777666655567
Q ss_pred EEEEEeCcC
Q 028468 187 LKVTVPKVK 195 (208)
Q Consensus 187 L~I~lPK~~ 195 (208)
+.|+|-|..
T Consensus 248 ~e~~l~KV~ 256 (368)
T COG5091 248 VEVHLRKVE 256 (368)
T ss_pred heehhhhhh
Confidence 777777653
No 48
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=72.38 E-value=11 Score=31.43 Aligned_cols=76 Identities=14% Similarity=0.310 Sum_probs=56.5
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEE-CCCCCCCCcceEEEEeCCEEEE
Q 028468 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRID-LPEKLYRTDQIKAEMKNGVLKV 189 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~i~A~~~nGvL~I 189 (208)
+.+-++++.+.+.+.|-|+..|+|+|.+..+.|-|...--+ ...|.-.+. |-.+| +++.-+-..+-....|
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq-------GK~y~~~vnnLlk~I-~vEks~~kvKtd~v~I 148 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ-------GKNYRMIVNNLLKPI-SVEKSSKKVKTDTVLI 148 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecC-------Ccceeeehhhhcccc-ChhhcccccccceEEE
Confidence 45567778899999999999999999999998888765322 124554443 55667 7788777777777778
Q ss_pred EEeCc
Q 028468 190 TVPKV 194 (208)
Q Consensus 190 ~lPK~ 194 (208)
.+.|.
T Consensus 149 ~~kkV 153 (224)
T KOG3260|consen 149 LCKKV 153 (224)
T ss_pred eehhh
Confidence 88554
No 49
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=69.09 E-value=12 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcCc
Q 028468 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~ 196 (208)
.|.-.+.||. + +.+.|+-.+++|.|+|..-+..+
T Consensus 9 ~~~v~adlPG-~-~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVCG-F-EPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEecc
Confidence 5666678995 6 89999999999999999987543
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=66.50 E-value=13 Score=25.44 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCeEEEEEEcC-CCCccceEEEEECCEEEEEEE
Q 028468 117 DDALNLSIDMP-GLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 117 ~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~ 148 (208)
...|.-.+.|| ++..+.++..+++|.|+|+..
T Consensus 55 ~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 55 YGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred CcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 57799999999 789999999999999999864
No 51
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.76 E-value=17 Score=26.13 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.0
Q ss_pred CeEEEEEEcC-CCCccceEEEEECCEEEEEEEecccC
Q 028468 118 DALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKEG 153 (208)
Q Consensus 118 d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~~ 153 (208)
..|.-.+.|| ++..+.|+-.+++|.|+|+..+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 4677789999 78999999999999999999876554
No 52
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=65.54 E-value=13 Score=26.54 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=26.6
Q ss_pred CeEEEEEEcCCCCccceEEEEECCEEEEEE
Q 028468 118 DALNLSIDMPGLGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 118 d~y~l~vdLPG~~kedI~V~v~~~~L~I~g 147 (208)
+.|.-.+.||++..+.++-++++|.|+|+.
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 457777899999999999999999999985
No 53
>PF14913 DPCD: DPCD protein family
Probab=64.74 E-value=51 Score=27.61 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=57.9
Q ss_pred CcceeeEEEcCCeEEEEE-EcCCCCccceEEEEEC--CEEEEEEEecccCccCceeeEEEEEEECCC------CCCCCcc
Q 028468 107 LRRGWDAKETDDALNLSI-DMPGLGKEDVRVSLEQ--NTLVIRGEGGKEGEDEESVRRYTSRIDLPE------KLYRTDQ 177 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~v-dLPG~~kedI~V~v~~--~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~------~v~d~~~ 177 (208)
..|-+-=..+...|.-+| .|| +.++--+|++++ +.++|+-.-+ +|-+.|.+|+ +. +.+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNK----------KYyKk~~IPDl~R~~l~l-~~~~ 152 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNK----------KYYKKFSIPDLDRCGLPL-EQSA 152 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCc----------cceeEecCCcHHhhCCCc-chhh
Confidence 456566677888999998 555 578888888875 5788886532 6777788874 23 5678
Q ss_pred eEEEEeCCEEEEEEeCcC
Q 028468 178 IKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 178 i~A~~~nGvL~I~lPK~~ 195 (208)
++..+.|..|.|+..|..
T Consensus 153 ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 153 LSFAHQNNTLIISYKKPK 170 (194)
T ss_pred ceeeeecCeEEEEecCcH
Confidence 888999999999998853
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=64.65 E-value=25 Score=27.54 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=24.7
Q ss_pred EEEECCCCCCCCcceEEEEeCCEEEEEEeCcCc
Q 028468 164 SRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 164 r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~ 196 (208)
-...||. + +.+.|+-.+++|+|+|.--+..+
T Consensus 49 v~aelPG-v-~kedi~V~v~~~~LtI~ge~~~~ 79 (137)
T PRK10743 49 IAIAVAG-F-AESELEITAQDNLLVVKGAHADE 79 (137)
T ss_pred EEEECCC-C-CHHHeEEEEECCEEEEEEEECcc
Confidence 3355885 7 89999999999999999876543
No 55
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=63.18 E-value=25 Score=23.88 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=29.4
Q ss_pred CeEEEEEEcCC-CCccceEEEEECCEEEEEEEecc
Q 028468 118 DALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 118 d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
+.|.+.++||+ +.+++.+..+.++.|.|+-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 56899999996 69999999999999999987643
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=62.03 E-value=29 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=28.4
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
..|.-.+.||. + +++.|+.+++||.|+|.--+.
T Consensus 7 d~y~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVCH-F-TPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 36788899997 5 799999999999999998654
No 57
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=61.77 E-value=33 Score=24.50 Aligned_cols=33 Identities=6% Similarity=0.278 Sum_probs=28.0
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
..|.-.+.||. + +++.|+-..++|.|+|.--+.
T Consensus 10 ~~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVKH-F-SPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 36777788997 5 799999999999999998654
No 58
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=61.10 E-value=34 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~ 195 (208)
..|.-.+.||. + +++.|+-.+++|.|+|+--+..
T Consensus 7 ~~~~v~~dlpG-~-~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 7 PMFQILLDVVQ-F-RPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred ceEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 47888899997 5 7999999999999999997654
No 59
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=59.97 E-value=24 Score=25.17 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=29.6
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcCcc
Q 028468 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 197 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~~ 197 (208)
.|.-.+.||. + +.+.|+-.+++|.|+|.-.+..+.
T Consensus 12 ~~~v~~~lPG-~-~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVAG-F-SEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEcccc
Confidence 6777889997 6 899999999999999998776544
No 60
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=59.65 E-value=33 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=24.7
Q ss_pred EEEECCCCCCCCcceEEEEeCCEEEEEEeCcCc
Q 028468 164 SRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 164 r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~ 196 (208)
-.+.||. + +.+.|+-.+++|.|+|.--+..+
T Consensus 47 v~adlPG-v-~kedi~V~v~~~~LtI~ge~~~~ 77 (142)
T PRK11597 47 ITLALAG-F-RQEDLDIQLEGTRLTVKGTPEQP 77 (142)
T ss_pred EEEEeCC-C-CHHHeEEEEECCEEEEEEEEccc
Confidence 3356785 6 89999999999999999976543
No 61
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=59.29 E-value=20 Score=25.61 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=27.8
Q ss_pred CCeEEEEEEcC-CCCccceEEEEECCEEEEEE
Q 028468 117 DDALNLSIDMP-GLGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 117 ~d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g 147 (208)
...|.-.+.|| ++..+.|+-.+++|.|+|+.
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 35789999999 68999999999999999985
No 62
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=58.46 E-value=41 Score=23.74 Aligned_cols=32 Identities=6% Similarity=0.323 Sum_probs=27.6
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+-.+.+|.|+|..-+.
T Consensus 8 ~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVKH-F-SPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777889995 6 899999999999999998654
No 63
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=58.03 E-value=24 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.344 Sum_probs=30.2
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcCc
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKE 196 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~~ 196 (208)
..|.-.+.||. + .++.|+-.++++.|+|..-+...
T Consensus 7 ~~~~v~~dlpG-~-~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVKG-F-KPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECCC-C-CHHHcEEEEECCEEEEEEEEeee
Confidence 37888899997 6 89999999999999999977643
No 64
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.27 E-value=19 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.8
Q ss_pred CCCCccceEEEEECCEEEEEEEeccc
Q 028468 127 PGLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
++++..+|+|.+.++.++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 46777799999999999999987644
No 65
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=55.26 E-value=38 Score=24.19 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=29.1
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~ 195 (208)
..|.-.+.||. + +++.|+..++++.|+|.--+..
T Consensus 7 d~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVRG-F-SPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECCC-C-ChHHeEEEEECCEEEEEEEEee
Confidence 47888899997 5 7999999999999999987653
No 66
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=54.59 E-value=39 Score=22.53 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEEEeccc
Q 028468 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
+..|.+.++|++ +.+++....+.++.|.|.-.+...
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 467999999997 588889999999999999876543
No 67
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=54.43 E-value=33 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=28.5
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
..|.-.+.||. + +++.|+-.+++|.|+|.--|.
T Consensus 8 ~~~~v~~dlpG-~-~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVSD-F-SPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEe
Confidence 37888899996 6 899999999999999998764
No 68
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=53.73 E-value=47 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=33.5
Q ss_pred CcceeeEEEcCCeEEEEEEcCCC-----CccceEEEEECCEEEEEE
Q 028468 107 LRRGWDAKETDDALNLSIDMPGL-----GKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 107 ~~p~~di~E~~d~y~l~vdLPG~-----~kedI~V~v~~~~L~I~g 147 (208)
..|.+.|+++++.|.|.+--+.- .++...|.-+++.|.|..
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 47999999999999999866543 677778888888888875
No 69
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=51.90 E-value=34 Score=22.14 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEEE
Q 028468 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~ 148 (208)
...|...+.||+ +..+.++..+.++.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 468999999996 68889999999999999864
No 70
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=51.56 E-value=32 Score=25.12 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.8
Q ss_pred CeEEEEEEcC-CCCccceEEEEE-CCEEEEEE
Q 028468 118 DALNLSIDMP-GLGKEDVRVSLE-QNTLVIRG 147 (208)
Q Consensus 118 d~y~l~vdLP-G~~kedI~V~v~-~~~L~I~g 147 (208)
..|.=++.|| +++.++|+=.+. +|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4677889999 899999999998 89999987
No 71
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=50.95 E-value=15 Score=24.91 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=12.0
Q ss_pred cceEEEEeCCEEEEEEe
Q 028468 176 DQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 176 ~~i~A~~~nGvL~I~lP 192 (208)
..|+|.|+||||+--=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999986433
No 72
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=48.43 E-value=90 Score=25.70 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=31.7
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.++|+|.. +..++ .||.. .++...+||.|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~----------G~L~~--~~~~~-----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPK----------GELTR--DFWYP-----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCC----------eEEEE--EecCC-----cEEEEEECCEEEEEEC
Confidence 6899999999999999975 33333 33321 3555678898777754
No 73
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=48.22 E-value=66 Score=22.80 Aligned_cols=32 Identities=6% Similarity=0.345 Sum_probs=27.3
Q ss_pred EEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 161 RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 161 ~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
.|.-.+.||. + +++.|+-...+|.|+|.--+.
T Consensus 8 ~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVKH-F-SPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 6777788987 6 899999999999999998543
No 74
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=45.73 E-value=43 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.3
Q ss_pred EEEEEEcC-CCCccceEEEEE-CCEEEEEEEecccC
Q 028468 120 LNLSIDMP-GLGKEDVRVSLE-QNTLVIRGEGGKEG 153 (208)
Q Consensus 120 y~l~vdLP-G~~kedI~V~v~-~~~L~I~g~~~~~~ 153 (208)
|.=+.-|| |++++.|+=.+. +|.|+|+|.+....
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 34456788 999999999997 69999999876543
No 75
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=45.72 E-value=51 Score=25.66 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=27.3
Q ss_pred CeEEEEEEcC-CCCccceEEEEECCEEEEEEEeccc
Q 028468 118 DALNLSIDMP-GLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 118 d~y~l~vdLP-G~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
..|.-++.|| ++..+.++-++++|.|+|.-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 4567778888 4677788999999999999876544
No 76
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=45.23 E-value=65 Score=22.91 Aligned_cols=34 Identities=18% Similarity=0.431 Sum_probs=28.7
Q ss_pred eEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCcC
Q 028468 160 RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVK 195 (208)
Q Consensus 160 ~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~~ 195 (208)
..|.-.+.||. + +++.|+-.+.++.|+|+--+..
T Consensus 10 ~~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVNH-F-APEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECCC-C-CHHHEEEEEECCEEEEEEEECc
Confidence 36777889997 5 8999999999999999997643
No 77
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=45.06 E-value=1.2e+02 Score=24.71 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=31.3
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.++|+|.. +..++.+. |.. ++...+++.|.|..+
T Consensus 7 P~~V~v~i~~~~i~vkGp~----------G~L~~~~~-~~~------v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPK----------GEVTRELW-YPG------IEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCC----------eEEEEEEe-CCc------EEEEEeCCEEEEEeC
Confidence 5789999999999999975 33343332 333 445668898888754
No 78
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=43.84 E-value=80 Score=21.03 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=29.4
Q ss_pred eeEE-EcCCeEEEEEEcCCCCccceEEEEE-CCEEEEEEEe
Q 028468 111 WDAK-ETDDALNLSIDMPGLGKEDVRVSLE-QNTLVIRGEG 149 (208)
Q Consensus 111 ~di~-E~~d~y~l~vdLPG~~kedI~V~v~-~~~L~I~g~~ 149 (208)
+.+. -..+.|.|++..||+..-.-.|.+. +....|+.+.
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 4555 4467899999999998888888887 5566676653
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=43.00 E-value=55 Score=26.71 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=31.2
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|.. +..++.| |..+ +...+++.|.|...
T Consensus 12 P~~V~v~~~~~~v~vkGp~----------G~l~~~~--~~~v------~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPK----------GELSRTL--NPDV------TVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCC----------EEEEEEc--CCCe------EEEEECCEEEEEcC
Confidence 5899999999999999964 3444444 5444 34568887777654
No 80
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=41.83 E-value=65 Score=26.25 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=31.3
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|.. +..++.| |..+ ....+++.|.|...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~----------G~l~~~l--~~~i------~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPK----------GELSRTL--HPGV------TVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCC----------eEEEEEc--CCCe------EEEEECCEEEEEec
Confidence 5899999999999999964 3444433 5444 44568888777754
No 81
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=41.56 E-value=1e+02 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=33.3
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.++|+|.. +..++ .||..- ..+....+||-|.|.-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~----------G~L~~--~~~~~~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKY----------GELTR--SFRHLP---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCC----------ceEEE--EecCCC---ceEEEEeCCCEEEEEeC
Confidence 6899999999999999964 23333 444321 25667788998777754
No 82
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.48 E-value=1e+02 Score=25.55 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=32.6
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|.+. ..+ ..||..- =.|....++|.|.|.-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG----------~Ls--~~~~~~~---~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG----------TLT--KDLRHLQ---LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc----------EEE--EEcCCCC---cEEEEEecCCEEEEEeC
Confidence 58999999999999999753 333 3455421 13666778888888744
No 83
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=37.39 E-value=85 Score=21.34 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEEEecc
Q 028468 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
+..|.+.++|++ +.+++.+..+.++.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457999999986 68889999999999999987644
No 84
>PRK10568 periplasmic protein; Provisional
Probab=37.15 E-value=2.2e+02 Score=23.56 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=19.4
Q ss_pred CCCCccceEEEEECCEEEEEEEeccc
Q 028468 127 PGLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
|+++..+|+|.+.++.+++.|.-...
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~s~ 98 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVESQ 98 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeCCH
Confidence 44556678888888888888887643
No 85
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=33.33 E-value=1.6e+02 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=30.6
Q ss_pred cCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCc
Q 028468 116 TDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGE 154 (208)
Q Consensus 116 ~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~ 154 (208)
.++.|+=++.||--..+-.+++++++.|.|..++.++..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCCC
Confidence 344466688898667788899999999999998776543
No 86
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=32.64 E-value=1.1e+02 Score=25.38 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=31.7
Q ss_pred cceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 132 EDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 132 edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
..+++..+.+.+.|+|..+. |...=.+.... +.=.++-+|++|.|++.==+.
T Consensus 131 ~~i~v~~~~~~V~V~Gtlkt----------~vg~~~~~~~~-k~Y~l~~~y~~G~l~L~~f~e 182 (188)
T PRK13726 131 TSVRVWPQYGRVDIRGVLKT----------WIGDSKPFTEI-KHYILILKRENGVTWLDNFGE 182 (188)
T ss_pred eeEEEccCCCEEEEEEEEEE----------EECCcccCchh-eEEEEEEEEcCCEEEEEEEEe
Confidence 45666666788888887532 21111122223 456788999999999865443
No 87
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=32.31 E-value=99 Score=21.15 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=25.0
Q ss_pred EEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 162 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 162 f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
..=.|.+|..+ +.+.++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~-~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGT-KSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCC-cceeEEEEEEcCEEEEEEC
Confidence 34457789888 8999999999999999886
No 88
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.64 E-value=1.1e+02 Score=22.61 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=27.4
Q ss_pred eeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEE
Q 028468 111 WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGE 148 (208)
Q Consensus 111 ~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~ 148 (208)
|++.+.+| .|....||++ .|.|+.+...|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEecccceEEEecc
Confidence 67788888 6677889886 4778888999999984
No 89
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=31.25 E-value=2e+02 Score=23.48 Aligned_cols=44 Identities=20% Similarity=0.483 Sum_probs=30.6
Q ss_pred ccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 131 KEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 131 kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
|++|+|+++++.|+|+|... ..+ ..||..+ ....+++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G----------~l~--~~~~~~v------~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG----------TLS--RKIPDLI------TIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE----------EEE--EECCCCe------EEEEeCCEEEEEcC
Confidence 57899999999999999742 222 4555543 44568887777654
No 90
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=30.48 E-value=74 Score=23.84 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.8
Q ss_pred eEEEEeCCEEEEEEeCc
Q 028468 178 IKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 178 i~A~~~nGvL~I~lPK~ 194 (208)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 77889999999999853
No 91
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=30.34 E-value=1.8e+02 Score=22.26 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=14.6
Q ss_pred CeEEEEEEcCC-CCccceEEEEECCEEEEEE
Q 028468 118 DALNLSIDMPG-LGKEDVRVSLEQNTLVIRG 147 (208)
Q Consensus 118 d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g 147 (208)
....+.+.||- .+-++|++....+.+.|.+
T Consensus 118 ~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 118 NKSKITIYLPKDYKLDKIDIKTSSGDITIED 148 (166)
T ss_pred CCcEEEEEECCCCceeEEEEEeccccEEEEc
Confidence 34455555553 2334555555555555443
No 92
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=29.76 E-value=1.9e+02 Score=23.90 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=31.5
Q ss_pred CCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEEe
Q 028468 129 LGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 192 (208)
Q Consensus 129 ~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~lP 192 (208)
..|++|+|+++++.++++|-+. ..+ ..++.++ |+-+.+|+++.+..-
T Consensus 10 ~~P~gV~V~i~~~~v~vkGpkG----------eL~--~~~~~~~-----v~v~~~~~~~vv~~~ 56 (178)
T COG0097 10 VIPAGVTVSIEGQVVTVKGPKG----------ELT--REFHDNV-----VKVEVEDNILVVRPV 56 (178)
T ss_pred ecCCCeEEEEeccEEEEECCCc----------EEE--EEecCcc-----eEEEecCCEEEEeec
Confidence 3488999999999999999642 222 3333322 667778887666543
No 93
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.47 E-value=98 Score=23.16 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.1
Q ss_pred cceEEEEeCCEEEEEEeCc
Q 028468 176 DQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 176 ~~i~A~~~nGvL~I~lPK~ 194 (208)
..+.+.+.+|||+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3688999999999999653
No 94
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=29.28 E-value=77 Score=23.60 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.7
Q ss_pred ceEEEEeCCEEEEEEeC
Q 028468 177 QIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 177 ~i~A~~~nGvL~I~lPK 193 (208)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888899999999984
No 95
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=29.27 E-value=91 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.5
Q ss_pred cceEEEEeCCEEEEEEeC
Q 028468 176 DQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 176 ~~i~A~~~nGvL~I~lPK 193 (208)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 468888999999999983
No 96
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.94 E-value=2.8e+02 Score=25.84 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=48.0
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCccceEEEEEC-CEEEEEEEecccCcc-----CceeeEEEEEEECCCCCCCCcceEEEE
Q 028468 109 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQ-NTLVIRGEGGKEGED-----EESVRRYTSRIDLPEKLYRTDQIKAEM 182 (208)
Q Consensus 109 p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~-~~L~I~g~~~~~~~~-----e~~~~~f~r~i~LP~~v~d~~~i~A~~ 182 (208)
-+++++-+.+.|.| +|+ ++.|.|.++| +.+.+..+..++.+- +.+.|.++-.++. +++ ++.+.+..
T Consensus 52 vpvdvlYD~~~y~i----sg~-~etV~Vtl~G~ns~~~~~~~~~dFkV~ADLt~a~~Gt~evkl~v-e~l--~~~ltvsV 123 (403)
T COG4856 52 VPVDVLYDSDKYFI----SGQ-PETVTVTLKGPNSIVLKSEKPEDFKVVADLTHAGVGTHEVKLQV-EGL--PDGLTVSV 123 (403)
T ss_pred ceeEEEEccccccc----cCC-ceEEEEEEeCCcceeeeeecCcCeEEEEEhhhcCCCceEeeeEe-ecC--CCCceEEE
Confidence 45788888887764 454 5778888888 788887776554221 1122333333322 333 56667777
Q ss_pred eCCEEEEEEeCc
Q 028468 183 KNGVLKVTVPKV 194 (208)
Q Consensus 183 ~nGvL~I~lPK~ 194 (208)
.--.-.|++-|+
T Consensus 124 ~P~~~~Vti~kk 135 (403)
T COG4856 124 NPEKATVTIEKK 135 (403)
T ss_pred ccceeEEEEeee
Confidence 777777777765
No 97
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=26.57 E-value=90 Score=20.82 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=15.9
Q ss_pred cCCCCc-cceEEEEECCEEEEE
Q 028468 126 MPGLGK-EDVRVSLEQNTLVIR 146 (208)
Q Consensus 126 LPG~~k-edI~V~v~~~~L~I~ 146 (208)
-.||.. +.|+|.+..+.|+|+
T Consensus 35 ~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 35 EAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HhCCCCCCEEEEEEECCEEEEe
Confidence 357744 578888889988886
No 98
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=26.52 E-value=1.3e+02 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCCCcceEEEEeCCEEEEEE
Q 028468 162 YTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 162 f~r~i~LP~~v~d~~~i~A~~~nGvL~I~l 191 (208)
-.-.|.||.++ ..+.++..++..-|+|.+
T Consensus 17 V~v~i~lp~~~-~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGT-RAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCC-ceeeEEEEEEcCEEEEEE
Confidence 34457899999 899999999999999988
No 99
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=26.19 E-value=51 Score=22.32 Aligned_cols=21 Identities=33% Similarity=0.775 Sum_probs=17.9
Q ss_pred CCccceEEEEECCEEEEEEEe
Q 028468 129 LGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 129 ~~kedI~V~v~~~~L~I~g~~ 149 (208)
++.+.|.|....+.|.|+|+.
T Consensus 23 f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETTEEEEEEEEE
T ss_pred ECCCEEEEEeCCEEEEEECce
Confidence 467888999999999999974
No 100
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=26.10 E-value=1.5e+02 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.6
Q ss_pred ECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 167 DLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 167 ~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
.=|+.| .+.........|-+++++|+.
T Consensus 150 ~~p~~V-~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENV-VPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSS-EEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEE-EEEEeeEEecCCEEEEEeCCC
Confidence 447888 677666666899999999974
No 101
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=25.70 E-value=32 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=17.8
Q ss_pred CCCCCCCcceEEEEeCCEEEEEEeC
Q 028468 169 PEKLYRTDQIKAEMKNGVLKVTVPK 193 (208)
Q Consensus 169 P~~v~d~~~i~A~~~nGvL~I~lPK 193 (208)
-+.+ ..+.-.+.|.||||+|.|+-
T Consensus 66 ~e~~-~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 66 AEEV-PGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred Hhhc-CccccccccccceEEEEecC
Confidence 3444 34566689999999999983
No 102
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=24.00 E-value=1e+02 Score=24.14 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=17.1
Q ss_pred EECCCCCCCCcceEEEEeCCEEEEEEeCc
Q 028468 166 IDLPEKLYRTDQIKAEMKNGVLKVTVPKV 194 (208)
Q Consensus 166 i~LP~~v~d~~~i~A~~~nGvL~I~lPK~ 194 (208)
+.-|+++ .+.++...+||.|.|...+.
T Consensus 25 v~~~~~l--~~~i~~~v~~g~L~I~~~~~ 51 (181)
T PF10988_consen 25 VEADENL--LDRIKVEVKDGTLKISYKKN 51 (181)
T ss_dssp EEEEHHH--HCCEEEEEETTEEEEEE-SC
T ss_pred EEEChhh--cceEEEEEECCEEEEEECCC
Confidence 3334544 46777777888888877744
No 103
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=38 Score=31.74 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=55.5
Q ss_pred cceeeEEEcCCeEEEEEEcCCCCccceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEE--eCC
Q 028468 108 RRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEM--KNG 185 (208)
Q Consensus 108 ~p~~di~E~~d~y~l~vdLPG~~kedI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~--~nG 185 (208)
.|.+.+..+++...|.+..|-.....+.+..-++....++ +.|-.+..+|..+.+-..-.|.| ++|
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~------------~pyflrl~~p~~~~~d~~~n~s~d~kd~ 70 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSA------------GPYFLRLAGPGMVEDDARPNASYDAKDG 70 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhcc------------chhHHhhcCcchhhhhccccCccccccc
Confidence 5678889999999999999966666666666666655554 35556677777664444444555 889
Q ss_pred EEEEEEeCcCc
Q 028468 186 VLKVTVPKVKE 196 (208)
Q Consensus 186 vL~I~lPK~~~ 196 (208)
-..|.+||..+
T Consensus 71 ~~~vK~~K~~~ 81 (466)
T KOG3247|consen 71 YAHVKVPKFHP 81 (466)
T ss_pred eeEEeecCCCc
Confidence 99999999643
No 104
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=23.63 E-value=1.1e+02 Score=24.10 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=22.1
Q ss_pred CCCCccceEEEEECCEEEEEEEeccc
Q 028468 127 PGLGKEDVRVSLEQNTLVIRGEGGKE 152 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~~~~ 152 (208)
.|+...+++|.++++.++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 47778889999999999999987654
No 105
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=22.65 E-value=2e+02 Score=20.91 Aligned_cols=35 Identities=3% Similarity=0.114 Sum_probs=29.4
Q ss_pred CCeEEEEEEcCC-CCccceEEEEECCEEEEEEEecc
Q 028468 117 DDALNLSIDMPG-LGKEDVRVSLEQNTLVIRGEGGK 151 (208)
Q Consensus 117 ~d~y~l~vdLPG-~~kedI~V~v~~~~L~I~g~~~~ 151 (208)
+..|.+.++|.+ +.+++-+..+.++.|.|+-.+..
T Consensus 43 ~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 43 GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred CeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 345899999987 58899999999999999988754
No 106
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=22.63 E-value=2e+02 Score=20.84 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=28.5
Q ss_pred EEEcCCeEEEEEEc-CCCCccceEEEEEC--CEEEEEEEecc
Q 028468 113 AKETDDALNLSIDM-PGLGKEDVRVSLEQ--NTLVIRGEGGK 151 (208)
Q Consensus 113 i~E~~d~y~l~vdL-PG~~kedI~V~v~~--~~L~I~g~~~~ 151 (208)
|.++++.+.|.+.+ ||-+++.| +.+++ +.|.|+-.-..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecCC
Confidence 35778888888877 89888888 44667 78888876543
No 107
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=21.44 E-value=1.9e+02 Score=23.50 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=27.3
Q ss_pred cceEEEEECCEEEEEEEecccCccCceeeEEEEEEECCCCCCCCcceEEEEeCCEEEEEE
Q 028468 132 EDVRVSLEQNTLVIRGEGGKEGEDEESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTV 191 (208)
Q Consensus 132 edI~V~v~~~~L~I~g~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~i~A~~~nGvL~I~l 191 (208)
+++++..+.+.+.|+|..+.- ...=.+...- ..=.+.-+|.||.|.|.=
T Consensus 131 ~~i~~d~~~~~V~V~G~l~t~----------~g~~~~~~~~-~~y~~~~~~~~g~~~L~~ 179 (187)
T PF05309_consen 131 KSIEVDPETLTVFVTGTLKTW----------IGDKKVSSED-KTYRLQFKYRNGRLWLKS 179 (187)
T ss_pred eEEEEecCCCEEEEEEEEEEE----------ECCcccccee-EEEEEEEEEeCCEEEEee
Confidence 566666677888888864321 1111111111 233467778999888753
No 108
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.34 E-value=8.6 Score=26.76 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=11.7
Q ss_pred CcceEEEEeCCEEEE
Q 028468 175 TDQIKAEMKNGVLKV 189 (208)
Q Consensus 175 ~~~i~A~~~nGvL~I 189 (208)
++-|.|.|+||||+=
T Consensus 4 ~kIIEaiYEnGVfKP 18 (67)
T COG2880 4 PKIIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHHHhcccccc
Confidence 345789999999973
No 109
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.89 E-value=74 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.4
Q ss_pred CCCCccceEEEEECCEEEEEEEe
Q 028468 127 PGLGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 127 PG~~kedI~V~v~~~~L~I~g~~ 149 (208)
=-++.+.|.+....+.|.|+|+.
T Consensus 39 ~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 39 VVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred EEECCCEEEEEcCceEEEEEccc
Confidence 34578999999999999999974
No 110
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=20.23 E-value=79 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCccceEEEEECCEEEEEEEe
Q 028468 129 LGKEDVRVSLEQNTLVIRGEG 149 (208)
Q Consensus 129 ~~kedI~V~v~~~~L~I~g~~ 149 (208)
|+.+.|.+....+.|.|+|+.
T Consensus 22 fd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCcEEEEEEcce
Confidence 467888888888999999874
Done!