Query 028469
Match_columns 208
No_of_seqs 134 out of 184
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 19:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 91.3 0.084 2.9E-06 37.2 1.8 27 1-34 27-53 (70)
2 3h0g_L DNA-directed RNA polyme 88.2 0.24 8.2E-06 34.3 2.1 27 1-34 20-46 (63)
3 4bbr_M Transcription initiatio 79.5 0.74 2.5E-05 40.9 1.9 37 2-41 21-58 (345)
4 2e2z_A TIM15; protein import, 78.7 0.8 2.7E-05 34.5 1.6 32 2-34 13-46 (100)
5 3k7a_M Transcription initiatio 78.6 0.95 3.2E-05 40.0 2.3 33 2-37 21-53 (345)
6 2kae_A GATA-type transcription 78.2 0.6 2.1E-05 33.0 0.8 33 2-38 8-42 (71)
7 2fiy_A Protein FDHE homolog; F 75.7 1.5 5.2E-05 38.7 2.8 63 3-66 223-302 (309)
8 3k1f_M Transcription initiatio 74.0 1.7 5.8E-05 36.1 2.5 37 3-42 22-59 (197)
9 1d4u_A Nucleotide excision rep 72.9 1.2 4.3E-05 33.9 1.3 31 2-35 5-35 (111)
10 4ayb_P DNA-directed RNA polyme 72.1 1.7 5.8E-05 28.5 1.6 29 2-34 3-31 (48)
11 1gnf_A Transcription factor GA 69.8 1.6 5.5E-05 28.2 1.1 31 1-34 3-33 (46)
12 3j21_g 50S ribosomal protein L 69.6 1.1 3.8E-05 29.7 0.3 24 2-35 14-37 (51)
13 2kdx_A HYPA, hydrogenase/ureas 66.8 1.3 4.3E-05 33.4 0.2 27 2-36 73-100 (119)
14 1dl6_A Transcription factor II 65.2 3.6 0.00012 27.5 2.2 30 3-37 12-41 (58)
15 2jrp_A Putative cytoplasmic pr 64.5 3.9 0.00013 29.5 2.4 38 1-38 1-43 (81)
16 1gh9_A 8.3 kDa protein (gene M 62.6 2 6.8E-05 30.2 0.5 25 3-35 5-29 (71)
17 2gmg_A Hypothetical protein PF 61.8 3 0.0001 31.6 1.4 26 2-34 67-92 (105)
18 1k81_A EIF-2-beta, probable tr 61.6 3.1 0.00011 25.3 1.2 29 4-35 2-30 (36)
19 1pft_A TFIIB, PFTFIIBN; N-term 55.4 6.8 0.00023 24.8 2.1 31 2-37 5-35 (50)
20 2apo_B Ribosome biogenesis pro 54.0 5.3 0.00018 27.2 1.5 19 28-46 20-49 (60)
21 6rxn_A Rubredoxin; electron tr 52.8 8.2 0.00028 24.8 2.2 37 2-40 4-44 (46)
22 3dfx_A Trans-acting T-cell-spe 52.6 3.4 0.00012 28.4 0.4 30 2-34 7-36 (63)
23 2vut_I AREA, nitrogen regulato 52.5 3.6 0.00012 26.1 0.4 29 3-34 2-30 (43)
24 4gat_A Nitrogen regulatory pro 50.6 4.4 0.00015 28.0 0.7 30 2-34 9-38 (66)
25 2e9h_A EIF-5, eukaryotic trans 45.9 13 0.00045 29.7 2.9 31 4-35 105-135 (157)
26 2aus_D NOP10, ribosome biogene 44.5 8.8 0.0003 26.1 1.4 19 28-46 19-48 (60)
27 1ltl_A DNA replication initiat 43.5 8.3 0.00028 32.8 1.4 32 2-35 134-165 (279)
28 2i5o_A DNA polymerase ETA; zin 43.4 10 0.00035 23.5 1.5 26 26-51 9-36 (39)
29 3a43_A HYPD, hydrogenase nicke 41.9 6.8 0.00023 30.4 0.6 10 3-12 71-80 (139)
30 2jne_A Hypothetical protein YF 40.9 14 0.00047 27.7 2.0 37 1-37 31-72 (101)
31 2x5r_A Hypothetical protein OR 39.9 19 0.00065 26.9 2.7 32 2-33 77-113 (127)
32 2g2k_A EIF-5, eukaryotic trans 39.6 16 0.00055 29.6 2.5 31 4-35 98-128 (170)
33 1j2o_A FLIN2, fusion of rhombo 39.2 25 0.00087 25.4 3.4 43 2-44 3-52 (114)
34 2cor_A Pinch protein; LIM doma 38.5 14 0.00046 25.2 1.7 43 2-44 15-60 (79)
35 2l4z_A DNA endonuclease RBBP8, 38.0 23 0.00079 26.4 3.0 43 2-44 61-110 (123)
36 3j20_Y 30S ribosomal protein S 37.8 8.1 0.00028 25.1 0.4 9 4-12 21-29 (50)
37 1s24_A Rubredoxin 2; electron 36.9 14 0.00047 26.9 1.5 16 28-43 70-85 (87)
38 3o9x_A Uncharacterized HTH-typ 35.4 18 0.00062 26.5 2.0 33 3-35 3-45 (133)
39 1vq8_Z 50S ribosomal protein L 33.8 19 0.00066 25.7 1.9 28 2-35 27-54 (83)
40 2kwq_A Protein MCM10 homolog; 33.7 15 0.00052 26.9 1.3 27 3-36 49-75 (92)
41 3jyw_9 60S ribosomal protein L 33.1 17 0.00058 25.6 1.4 27 2-35 26-53 (72)
42 2v3b_B Rubredoxin 2, rubredoxi 32.6 14 0.00049 24.4 0.9 16 28-43 38-53 (55)
43 4hc9_A Trans-acting T-cell-spe 32.4 12 0.00041 28.3 0.6 30 2-34 5-34 (115)
44 1twf_J DNA-directed RNA polyme 32.0 9.4 0.00032 26.8 -0.1 18 3-20 5-22 (70)
45 2kn9_A Rubredoxin; metalloprot 31.9 18 0.00061 25.9 1.4 16 28-43 62-77 (81)
46 1ffk_W Ribosomal protein L37AE 31.5 22 0.00075 25.0 1.8 27 2-35 27-54 (73)
47 1dx8_A Rubredoxin; electron tr 31.5 26 0.00088 24.3 2.1 15 28-42 42-56 (70)
48 1ef4_A Subunit N, DNA-directed 31.3 6.7 0.00023 26.3 -0.9 19 3-21 4-22 (55)
49 3irb_A Uncharacterized protein 31.2 16 0.00055 28.3 1.2 30 3-42 48-77 (145)
50 4rxn_A Rubredoxin; electron tr 31.1 31 0.0011 22.7 2.4 16 28-43 38-53 (54)
51 1yk4_A Rubredoxin, RD; electro 30.7 24 0.00081 23.0 1.7 15 28-42 37-51 (52)
52 3u4z_A Telomerase-associated p 30.2 23 0.00078 25.9 1.7 19 18-36 25-44 (109)
53 2ayj_A 50S ribosomal protein L 30.0 16 0.00054 24.6 0.8 23 2-34 19-41 (56)
54 1nyp_A Pinch protein; LIM doma 29.4 23 0.00079 22.7 1.6 42 2-44 5-51 (66)
55 2zjr_Z 50S ribosomal protein L 27.7 23 0.00078 23.8 1.3 7 28-34 45-51 (60)
56 3u50_C Telomerase-associated p 26.6 15 0.00052 29.6 0.3 28 3-38 43-70 (172)
57 3i9v_9 NADH-quinone oxidoreduc 25.6 26 0.00089 26.7 1.5 16 3-18 51-71 (182)
58 1m3v_A FLIN4, fusion of the LI 25.5 42 0.0014 24.5 2.6 43 2-44 5-54 (122)
59 3iz5_m 60S ribosomal protein L 25.1 23 0.00078 26.0 1.0 27 2-35 36-63 (92)
60 1yc5_A NAD-dependent deacetyla 25.1 13 0.00046 31.0 -0.3 9 26-34 145-153 (246)
61 1x64_A Alpha-actinin-2 associa 24.7 35 0.0012 23.4 1.9 42 2-44 25-71 (89)
62 3glr_A NAD-dependent deacetyla 24.6 12 0.0004 32.5 -0.8 31 3-35 140-172 (285)
63 1x3z_A Peptide: N-glycanase; h 24.5 34 0.0011 30.6 2.1 36 2-37 119-166 (335)
64 1g47_A Pinch protein; LIM doma 24.5 28 0.00097 22.9 1.3 42 2-44 11-59 (77)
65 2dj7_A Actin-binding LIM prote 24.3 50 0.0017 22.3 2.6 42 2-44 15-61 (80)
66 1qyp_A RNA polymerase II; tran 24.1 44 0.0015 21.5 2.2 31 4-35 17-52 (57)
67 7fd1_A FD1, protein (7-Fe ferr 23.9 25 0.00087 24.7 1.0 35 2-36 5-46 (106)
68 3izc_m 60S ribosomal protein R 23.8 23 0.0008 26.0 0.8 27 2-35 36-63 (92)
69 2d8q_A BLU protein, zinc finge 23.7 30 0.001 23.6 1.3 21 2-35 15-35 (70)
70 2k4x_A 30S ribosomal protein S 23.7 30 0.001 22.7 1.3 9 3-11 19-27 (55)
71 3j21_i 50S ribosomal protein L 23.5 21 0.0007 25.8 0.4 27 2-35 35-62 (83)
72 1ryq_A DNA-directed RNA polyme 23.2 22 0.00075 24.8 0.5 22 2-35 11-32 (69)
73 1nkw_Y 50S ribosomal protein L 23.1 43 0.0015 23.4 2.1 13 22-34 29-41 (73)
74 1m2k_A Silent information regu 22.9 28 0.00096 29.1 1.3 30 3-35 122-151 (249)
75 1e8j_A Rubredoxin; iron-sulfur 22.6 45 0.0015 21.6 2.0 13 28-40 38-50 (52)
76 1wig_A KIAA1808 protein; LIM d 22.2 34 0.0012 22.7 1.3 43 2-44 5-52 (73)
77 2f9i_B Acetyl-coenzyme A carbo 22.0 12 0.00041 32.4 -1.2 35 4-44 32-81 (285)
78 2gnr_A Conserved hypothetical 21.7 31 0.0011 26.8 1.2 31 3-43 48-78 (145)
79 2cur_A Skeletal muscle LIM-pro 21.6 29 0.001 22.4 0.9 42 2-44 5-51 (69)
80 1ma3_A SIR2-AF2, transcription 21.3 25 0.00087 29.4 0.7 30 3-34 124-155 (253)
81 4a17_Y RPL37A, 60S ribosomal p 21.3 22 0.00074 26.7 0.2 27 2-35 36-63 (103)
82 2dar_A PDZ and LIM domain prot 21.0 40 0.0014 23.1 1.6 42 2-44 25-71 (90)
83 1nui_A DNA primase/helicase; z 20.9 42 0.0014 27.6 1.9 31 3-39 15-45 (255)
84 3cc2_Z 50S ribosomal protein L 20.7 23 0.0008 27.1 0.3 28 2-35 60-87 (116)
85 2vl6_A SSO MCM N-TER, minichro 20.5 27 0.00093 29.2 0.7 33 2-34 141-176 (268)
86 1x62_A C-terminal LIM domain p 20.4 34 0.0012 22.9 1.1 42 2-44 15-61 (79)
87 2l3k_A Rhombotin-2, linker, LI 20.2 36 0.0012 24.9 1.2 42 3-44 9-57 (123)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=91.27 E-value=0.084 Score=37.24 Aligned_cols=27 Identities=19% Similarity=0.785 Sum_probs=20.3
Q ss_pred CCceecccCcccccceeeccCCceEeecCCCccc
Q 028469 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 1 ~~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
++|+|-+||..++.. ..+.+ .|++||.
T Consensus 27 v~Y~C~~CG~~~e~~----~~d~i---rCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS----RTDAV---RCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC----TTSTT---CCSSSCC
T ss_pred EEEECCCCCCcceeC----CCCCc---cCCCCCc
Confidence 468999999997654 33333 7999997
No 2
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.20 E-value=0.24 Score=34.33 Aligned_cols=27 Identities=30% Similarity=0.806 Sum_probs=19.3
Q ss_pred CCceecccCcccccceeeccCCceEeecCCCccc
Q 028469 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 1 ~~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
+.|+|-+||+.++-= .. ..-+|++||.
T Consensus 20 v~Y~C~~Cg~~~~l~----~~---~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ----AK---EVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCC----SS---SCCCCSSSCC
T ss_pred eEEECCCCCCeeecC----CC---CceECCCCCc
Confidence 469999999998621 11 2247999985
No 3
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=79.48 E-value=0.74 Score=40.94 Aligned_cols=37 Identities=19% Similarity=0.540 Sum_probs=28.3
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccccc-ccce
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIE 41 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~D-kYiE 41 (208)
..+|.+||...+.+..+|+.|. +.|.+||-+.+ +.|.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~---~vC~~CGlVl~e~~iD 58 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVD 58 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTE---EEETTTCBEEESCCBC
T ss_pred CCcCCCCCCCCCceeEECCCCc---EEeCCCCCCccCcccc
Confidence 3589999996678888898764 58999998764 5554
No 4
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=78.68 E-value=0.8 Score=34.45 Aligned_cols=32 Identities=28% Similarity=0.787 Sum_probs=25.8
Q ss_pred CceecccCcccccceee--ccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~--ys~~~i~l~~C~~C~~ 34 (208)
.+.|-.|+++....+.+ |.+| +.+.+|+.|++
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~G-vViv~C~gC~n 46 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKG-TVLISCPHCKV 46 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTS-EEEEECTTTCC
T ss_pred EEEccCCCCcchhhcCHHHhhCC-EEEEEcCCCcc
Confidence 46899999998777765 6664 58889999987
No 5
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=78.62 E-value=0.95 Score=40.01 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=26.6
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~D 37 (208)
...|.+||...+.+-.+++.|. ..|.+||-+.+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~---~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCS---CCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCC---EecCCCCeEcc
Confidence 3579999998777777887664 58999999885
No 6
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=78.20 E-value=0.6 Score=32.95 Aligned_cols=33 Identities=15% Similarity=0.549 Sum_probs=26.6
Q ss_pred CceecccCcccccceee--ccCCceEeecCCCccccccc
Q 028469 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRAVADE 38 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~--ys~~~i~l~~C~~C~~~~Dk 38 (208)
+..|.+||..-..+|++ ..++ +.|..|+-.--+
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g----~LCNACGl~~~~ 42 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG----IQCNACFIYQRK 42 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC----CCSSHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC----ccchHHHHHHHH
Confidence 57899999999999999 6665 789999854333
No 7
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=75.72 E-value=1.5 Score=38.70 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=41.2
Q ss_pred ceecccCcccccceeeccC-------CceEeecCCCccc---ccccc--cee-----hhHHHHHHHHhcCcccceeeecc
Q 028469 3 YRCVKCGFRIKTLFVQYSP-------GNIRLMKCENCRA---VADEY--IEC-----EIMILLIDLILHKPQAYRHLLYN 65 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~-------~~i~l~~C~~C~~---~~DkY--iE~-----d~vil~IDllLlk~~ayRHllfN 65 (208)
-.|.+||+.-+--|....+ +.+|.+.|++||. +.|.- -+. |.--+.+|++..+.+ |+..=+|
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~dp~adDlatL~LDl~a~e~G-y~r~~~N 301 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDG-YLRRSPN 301 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHHHHHHTTHHHHHHHHHTT-CEECCCC
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhccCCCCCcchhHHHHHHHHHHHHhcC-CCCCCCC
Confidence 4799999984444443433 6899999999994 33321 112 333478898888755 8776666
Q ss_pred c
Q 028469 66 V 66 (208)
Q Consensus 66 ~ 66 (208)
-
T Consensus 302 p 302 (309)
T 2fiy_A 302 L 302 (309)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=73.99 E-value=1.7 Score=36.09 Aligned_cols=37 Identities=19% Similarity=0.553 Sum_probs=27.9
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccccc-cccee
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIEC 42 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~D-kYiE~ 42 (208)
.+|-+||...+++..+++.|. +.|.+||-+.| +.|..
T Consensus 22 ~~CPECGs~~t~IV~D~erGE---~VCsdCGLVLEEriID~ 59 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVDT 59 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTE---EEETTTCBBCCCCCBCH
T ss_pred eECcCCCCcCCeEEEeCCCCE---EEEcCCCCCcCCceeEC
Confidence 479999996677878887764 58999999865 44443
No 9
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=72.87 E-value=1.2 Score=33.86 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.3
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
-++|.+||.+- ...|=.++..+..|.+|...
T Consensus 5 ~~~C~eC~~~~---~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 5 YVICEECGKEF---MDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CEECTTTCCEE---SCSSSTTTTSCCCCTTTCSS
T ss_pred CCccccCCChh---hHHHHHHhCCeeechhhccc
Confidence 57899999872 12244456788899999864
No 10
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=72.05 E-value=1.7 Score=28.50 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=18.7
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
-|+|-.||+..+.-=.+.=|+. +||.||-
T Consensus 3 iY~C~rCg~~fs~~el~~lP~I----rCpyCGy 31 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGV----RCPYCGY 31 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSS----CCTTTCC
T ss_pred EEEeeccCCCccHHHHhhCCCc----ccCccCc
Confidence 4789999998755433333543 8999983
No 11
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=69.79 E-value=1.6 Score=28.20 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=25.5
Q ss_pred CCceecccCcccccceeeccCCceEeecCCCccc
Q 028469 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 1 ~~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
+...|.+|+..-..+|++=..|. +.|..|+-
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH---YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC---CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC---ccchHHHH
Confidence 35789999999999999876653 78999974
No 12
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.59 E-value=1.1 Score=29.70 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=18.6
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.++|-.||.+++ .....|.+||..
T Consensus 14 k~iCpkC~a~~~----------~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP----------WGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEEC----------TTCSSCSSSSSC
T ss_pred CccCCCCCCcCC----------CCceecCCCCCc
Confidence 478999999843 267899999864
No 13
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=66.81 E-value=1.3 Score=33.39 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=19.3
Q ss_pred CceecccCcccccceeeccCCceEee-cCCCccccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLM-KCENCRAVA 36 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~-~C~~C~~~~ 36 (208)
.++|-+||+..+-- + ... .||.|+...
T Consensus 73 ~~~C~~CG~~~e~~--~------~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN--A------LDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC--C------STTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC--C------CCCCcCccccCCC
Confidence 47899999976541 1 234 799999873
No 14
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=65.24 E-value=3.6 Score=27.45 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.3
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~D 37 (208)
..|.+||..- +-..+..|. ..|.+||-+.+
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge---~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGD---MICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCC---EECTTTCCEEC
T ss_pred ccCcCCCCCc--eeEeCCCCe---EEeCCCCCEEe
Confidence 4799998743 545565543 68999998764
No 15
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.49 E-value=3.9 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCceecccCcccccceeec-----cCCceEeecCCCccccccc
Q 028469 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVADE 38 (208)
Q Consensus 1 ~~~~CI~C~~~v~~Ly~~y-----s~~~i~l~~C~~C~~~~Dk 38 (208)
|+..|-+|+++.+.-=..+ +++.-+...||.|++..++
T Consensus 1 M~~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 1 MEITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHH
Confidence 4567778887754321222 2334455678888877665
No 16
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=62.61 E-value=2 Score=30.23 Aligned_cols=25 Identities=36% Similarity=0.877 Sum_probs=17.8
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.+|. ||... |..+.-+-.+|+ ||+.
T Consensus 5 v~C~-C~~~~------~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 5 FRCD-CGRAL------YSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEET-TSCCE------EEETTCSEEEET-TTEE
T ss_pred EECC-CCCEE------EEcCCCcEEECC-CCCe
Confidence 4788 99873 444445778999 9975
No 17
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.80 E-value=3 Score=31.56 Aligned_cols=26 Identities=27% Similarity=0.683 Sum_probs=18.6
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
+|+|-+||..- .+..-+-.+||.|+.
T Consensus 67 p~~C~~CG~~F-------~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 67 PAQCRKCGFVF-------KAEINIPSRCPKCKS 92 (105)
T ss_dssp CCBBTTTCCBC-------CCCSSCCSSCSSSCC
T ss_pred CcChhhCcCee-------cccCCCCCCCcCCCC
Confidence 68999999985 122224468999985
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=61.64 E-value=3.1 Score=25.31 Aligned_cols=29 Identities=31% Similarity=0.784 Sum_probs=22.2
Q ss_pred eecccCcccccceeeccCCceEeecCCCcccc
Q 028469 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 4 ~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|-+|+.|=..|-++ +..-..+|..||..
T Consensus 2 lC~~C~~peT~l~~~---~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKE---GRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEE---TTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEe---CCcEEEEhhcCCCc
Confidence 589999997777663 35566789999974
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.38 E-value=6.8 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=20.3
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~D 37 (208)
...|-+||.+ .|-..+..+ -..|+.||.+.+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g---elvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG---EIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT---EEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcCCCC---eEECcccCCccc
Confidence 3579999883 343344443 258999998654
No 20
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=54.03 E-value=5.3 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=14.5
Q ss_pred cCCCccc-----------cccccceehhHH
Q 028469 28 KCENCRA-----------VADEYIECEIMI 46 (208)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~vi 46 (208)
.||.||. +-|||-+|-..+
T Consensus 20 ~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 20 ICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp BCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred cCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 6999994 369998887644
No 21
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.84 E-value=8.2 Score=24.77 Aligned_cols=37 Identities=22% Similarity=0.580 Sum_probs=20.4
Q ss_pred CceecccCcccccce---eeccCCceEe-ecCCCccccccccc
Q 028469 2 EYRCVKCGFRIKTLF---VQYSPGNIRL-MKCENCRAVADEYI 40 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly---~~ys~~~i~l-~~C~~C~~~~DkYi 40 (208)
.++|..||.--+.-- +.+. .+.- -.||.|+.--+++.
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~--~lP~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFD--QLPDDWCCPVCGVSKDQFS 44 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGG--GSCTTCBCTTTCCBGGGEE
T ss_pred EEECCCCCeEEeCCcCCCcchh--hCCCCCcCcCCCCcHHHcE
Confidence 589999996432100 0110 1110 27999998766653
No 22
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=52.60 E-value=3.4 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=24.8
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
+..|.+||.....+|++=..|. +.|..||-
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~---~LCNACGl 36 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD---PVCNACGL 36 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC---CCCHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC---chhhHHHH
Confidence 5689999999999999876654 78999983
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=52.52 E-value=3.6 Score=26.09 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=23.8
Q ss_pred ceecccCcccccceeeccCCceEeecCCCccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
..|.+|+.....+|++-..|. +.|..||-
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 30 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 30 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC---EECHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC---cccHHHHH
Confidence 469999999999999876553 78988884
No 24
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=50.58 E-value=4.4 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=24.8
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
...|.+||..-..++++=..|. +.|..|+-
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~---~LCNaCGl 38 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 38 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTE---EECHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCC---CccHHHHH
Confidence 4689999999999999876654 77999974
No 25
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.86 E-value=13 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred eecccCcccccceeeccCCceEeecCCCcccc
Q 028469 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 4 ~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|-+|+.|=..|-+. +.+.+-..+|..||..
T Consensus 105 lC~~C~sPdT~L~~~-~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 105 LCPECENPETDLHVN-PKKQTIGNSCKACGYR 135 (157)
T ss_dssp SCTTTCCSCCEEEEE-TTTTEEEEECSSSCCE
T ss_pred ECCCCCCCccEEEEe-cCCCEEEEEccCCCCC
Confidence 599999997776543 3456677789999974
No 26
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.54 E-value=8.8 Score=26.14 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.3
Q ss_pred cCCCccc-----------cccccceehhHH
Q 028469 28 KCENCRA-----------VADEYIECEIMI 46 (208)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~vi 46 (208)
.||.||. +-|||-+|-..+
T Consensus 19 ~CP~CG~~t~~ahParfSP~Dky~~yR~~l 48 (60)
T 2aus_D 19 TCPVCGEKTKVAHPPRFSPEDPYGEYRRRL 48 (60)
T ss_dssp BCTTTCSBCEESSCCCCCSCCTTHHHHHHH
T ss_pred cCcCCCCccCCCCCCCCCCCCchHHHHHHH
Confidence 5999984 369998887643
No 27
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=43.49 E-value=8.3 Score=32.83 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=19.7
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.+.|-.||+... . .+-+++....+.|++|+.-
T Consensus 134 ~f~C~~C~~~~~-v-~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 134 VFECRGCMRHHA-V-TQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEETTTCCEEE-E-ECSSSSCCCCSCCTTTCCC
T ss_pred EEEcCCCCCEEE-E-EecCCcccCCCcCCCCCCC
Confidence 378999997531 1 1112233456799999963
No 28
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=43.38 E-value=10 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=18.7
Q ss_pred eecCCCcccc--ccccceehhHHHHHHH
Q 028469 26 LMKCENCRAV--ADEYIECEIMILLIDL 51 (208)
Q Consensus 26 l~~C~~C~~~--~DkYiE~d~vil~IDl 51 (208)
...|++||+. .+++-|++..=+..||
T Consensus 9 ~~~C~~C~~~i~~~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 9 QVPCEKCGSLVPVWDMPEHMDYHFALEL 36 (39)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHHHHHH
T ss_pred CcccccccCcCCcccccchhhHHHHHHH
Confidence 3479999986 6777888776555554
No 29
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=41.87 E-value=6.8 Score=30.39 Aligned_cols=10 Identities=20% Similarity=1.122 Sum_probs=8.2
Q ss_pred ceecccCccc
Q 028469 3 YRCVKCGFRI 12 (208)
Q Consensus 3 ~~CI~C~~~v 12 (208)
.+|-+||+..
T Consensus 71 ~~C~~CG~~~ 80 (139)
T 3a43_A 71 FKCRNCNYEW 80 (139)
T ss_dssp EEETTTCCEE
T ss_pred EECCCCCCEE
Confidence 5799999874
No 30
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=40.86 E-value=14 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=22.5
Q ss_pred CCceecccCcccccceeec-----cCCceEeecCCCcccccc
Q 028469 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVAD 37 (208)
Q Consensus 1 ~~~~CI~C~~~v~~Ly~~y-----s~~~i~l~~C~~C~~~~D 37 (208)
|+-.|.+|+++.+.-=..| ..+.-+...||.|++.-.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHH
Confidence 4567889998864321111 234567778888887644
No 31
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=39.92 E-value=19 Score=26.89 Aligned_cols=32 Identities=34% Similarity=0.639 Sum_probs=18.2
Q ss_pred CceecccCccc--ccceeec--cCC-ceEeecCCCcc
Q 028469 2 EYRCVKCGFRI--KTLFVQY--SPG-NIRLMKCENCR 33 (208)
Q Consensus 2 ~~~CI~C~~~v--~~Ly~~y--s~~-~i~l~~C~~C~ 33 (208)
.|+|+.||..- ++-|+.- .+| .---..|++|.
T Consensus 77 kprcvkcgaayngknhfrvvairngtyyldavcdkce 113 (127)
T 2x5r_A 77 KPRCVKCGAAYNGKNHFRVVAIRNGTYYLDAVCDKCE 113 (127)
T ss_dssp CCBCTTTCCBCCSSSCEEEEEETTTTEEEEEEETTTC
T ss_pred CcceeeecccccCCCcEEEEEEecCcEEeeeeccccc
Confidence 58999999863 3344432 122 22335677774
No 32
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=39.57 E-value=16 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred eecccCcccccceeeccCCceEeecCCCcccc
Q 028469 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 4 ~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|-+|+.|=..|-++- .+.+-..+|..||..
T Consensus 98 lC~~C~sPdT~L~k~~-~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCPECENPETDLHVNP-KKQTIGNSCKACGYR 128 (170)
T ss_dssp SCTTTSSSCEEEEEET-TTTEEEEEETTTCCC
T ss_pred ECCCCCCCccEEEEec-CCCEEEEEccccCCc
Confidence 5999999976665422 345566789999974
No 33
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.18 E-value=25 Score=25.43 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=26.9
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCcccccc----ccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVAD----EYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~~D----kYiE~d~ 44 (208)
.++|..|+.++..-+..-..+..=. -+|..|++.-+ .|.+.|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g 52 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLG 52 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTT
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECC
Confidence 4789999999865532222222222 35777887543 7888886
No 34
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.52 E-value=14 Score=25.17 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=25.2
Q ss_pred CceecccCcccccceeeccCC--ceEeecCCCccc-cccccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRA-VADEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~--~i~l~~C~~C~~-~~DkYiE~d~ 44 (208)
.++|-.|+.++..-+.+.... +..--.|..|++ +.++++|.|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g 60 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKG 60 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCEEETT
T ss_pred CCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCEeECC
Confidence 478999999987544433221 111235777776 4555656664
No 35
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=37.97 E-value=23 Score=26.36 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=25.7
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCccccc----cccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA----DEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~~----DkYiE~d~ 44 (208)
.++|-.|+.++..-+..-..+..=. -+|..|++.- +.|.+.|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg 110 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 110 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSS
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECC
Confidence 3689999999865431111222222 3577787754 36888775
No 36
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.76 E-value=8.1 Score=25.05 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.9
Q ss_pred eecccCccc
Q 028469 4 RCVKCGFRI 12 (208)
Q Consensus 4 ~CI~C~~~v 12 (208)
-|.+||.++
T Consensus 21 ~CP~CG~~~ 29 (50)
T 3j20_Y 21 FCPRCGPGV 29 (50)
T ss_dssp ECSSSCSSC
T ss_pred cCCCCCCce
Confidence 477777754
No 37
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=36.88 E-value=14 Score=26.92 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.0
Q ss_pred cCCCccccccccceeh
Q 028469 28 KCENCRAVADEYIECE 43 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (208)
.||.|+.--+.+.+.+
T Consensus 70 ~CPvCga~K~~F~~i~ 85 (87)
T 1s24_A 70 CCPDCGATKEDYVLYE 85 (87)
T ss_dssp CCSSSCCCGGGEEECS
T ss_pred CCCCCCCCHHHhhhcc
Confidence 6999999888877654
No 38
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=35.36 E-value=18 Score=26.52 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=19.9
Q ss_pred ceecccCccccc-----ceeeccCCceE-----eecCCCcccc
Q 028469 3 YRCVKCGFRIKT-----LFVQYSPGNIR-----LMKCENCRAV 35 (208)
Q Consensus 3 ~~CI~C~~~v~~-----Ly~~ys~~~i~-----l~~C~~C~~~ 35 (208)
..|..||..... .-..|++..+. -..|+.||..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 479999987321 12245555444 4568888863
No 39
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=33.85 E-value=19 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=18.8
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.+ ..++ ++ ...-+|++|++.
T Consensus 27 ~y~Cp~CG~~--~v~r---~a-tGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGED--RVDR---QG-TGIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCE--EEEE---EE-TTEEEETTTCCE
T ss_pred cCcCCCCCCc--ceec---cC-CCeEECCCCCCE
Confidence 5889999984 2322 22 135689999985
No 40
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=33.71 E-value=15 Score=26.92 Aligned_cols=27 Identities=26% Similarity=0.726 Sum_probs=19.7
Q ss_pred ceecccCcccccceeeccCCceEeecCCCccccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVA 36 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~ 36 (208)
+.|- ||++.-++ .++.+ ..|++||...
T Consensus 49 FkC~-C~~Rt~sl-~r~P~-----~~C~~Cg~~~ 75 (92)
T 2kwq_A 49 FKCP-CGNRTISL-DRLPK-----KHCSTCGLFK 75 (92)
T ss_dssp EECT-TSCEEEES-SSSCC-----SCCTTTCSCC
T ss_pred EECC-CCCceeEe-eeCCC-----CCCCCCCCCc
Confidence 4685 99998887 34544 3799999874
No 41
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=33.12 E-value=17 Score=25.56 Aligned_cols=27 Identities=26% Similarity=0.714 Sum_probs=19.2
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++.. ..-+=+|++|++.
T Consensus 26 ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRG-------AAGIWTCSCCKKT 53 (72)
T ss_dssp CBCCSSCCSSCBSBC-------SSSCBCCSSSCCC
T ss_pred CccCCCCCCceeEec-------CCCeEECCCCCCE
Confidence 5889999987 3331 2346689999974
No 42
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.59 E-value=14 Score=24.35 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.5
Q ss_pred cCCCccccccccceeh
Q 028469 28 KCENCRAVADEYIECE 43 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (208)
.||.|+.--+++.+.+
T Consensus 38 ~CP~Cga~K~~F~~~~ 53 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMIE 53 (55)
T ss_dssp CCTTTCCCGGGEEECC
T ss_pred cCCCCCCCHHHceecc
Confidence 6999999988887765
No 43
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.37 E-value=12 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.9
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
+..|.+||.....++++=..| -+.|..|+-
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g---~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG---HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS---CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC---CCcCcchhh
Confidence 568999999999999986555 368999985
No 44
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=32.05 E-value=9.4 Score=26.81 Aligned_cols=18 Identities=28% Similarity=0.659 Sum_probs=13.3
Q ss_pred ceecccCcccccceeecc
Q 028469 3 YRCVKCGFRIKTLFVQYS 20 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys 20 (208)
-+|-.||.++.+.|.+|.
T Consensus 5 VRCFTCGkvi~~~we~y~ 22 (70)
T 1twf_J 5 VRCFSCGKVVGDKWESYL 22 (70)
T ss_dssp SBCTTTCCBCTTCHHHHH
T ss_pred eecCCCCCChHHHHHHHH
Confidence 367778888877777774
No 45
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.94 E-value=18 Score=25.94 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.6
Q ss_pred cCCCccccccccceeh
Q 028469 28 KCENCRAVADEYIECE 43 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (208)
.||.|+.--+++.+.+
T Consensus 62 ~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCTTTCCCGGGEEEEC
T ss_pred cCCCCCCCHHHcEEcc
Confidence 6999999988887764
No 46
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=31.53 E-value=22 Score=24.98 Aligned_cols=27 Identities=30% Similarity=0.829 Sum_probs=19.6
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++.. ..-+=+|++|++.
T Consensus 27 ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRA-------STSIWVCGHCGYK 54 (73)
T ss_pred CccCCCCCCceeEEE-------EeEEEECCCCCcE
Confidence 5789999984 5443 3356789999985
No 47
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.52 E-value=26 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.676 Sum_probs=12.6
Q ss_pred cCCCcccccccccee
Q 028469 28 KCENCRAVADEYIEC 42 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (208)
.||.|+.--+++.+.
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 699999988887764
No 48
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=31.25 E-value=6.7 Score=26.35 Aligned_cols=19 Identities=32% Similarity=0.847 Sum_probs=12.9
Q ss_pred ceecccCcccccceeeccC
Q 028469 3 YRCVKCGFRIKTLFVQYSP 21 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~ 21 (208)
-+|-.||.++.+.|.+|..
T Consensus 4 VRCFTCGkvi~~~we~y~~ 22 (55)
T 1ef4_A 4 VRCLSCGKPVSAYFNEYQR 22 (55)
T ss_dssp SSCSCTTSCCHHHHHHHHH
T ss_pred eecCCCCCChhHHHHHHHH
Confidence 3677777777777777743
No 49
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=31.22 E-value=16 Score=28.30 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=19.6
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccccccccee
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIEC 42 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~DkYiE~ 42 (208)
.+|-.||+.. |-|. ..|++|+....+.+|.
T Consensus 48 ~rC~~CG~~~------~PPr----~~Cp~C~s~~~~~ve~ 77 (145)
T 3irb_A 48 SKCSKCGRIF------VPAR----SYCEHCFVKIENYVEI 77 (145)
T ss_dssp EECTTTCCEE------ESCC----SEETTTTEECCEEEEC
T ss_pred EEeCCCCcEE------cCch----hhCcCCCCCceeeeee
Confidence 4688888754 3332 2588888776666664
No 50
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.10 E-value=31 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.5
Q ss_pred cCCCccccccccceeh
Q 028469 28 KCENCRAVADEYIECE 43 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (208)
.||.|+.--|++.+.+
T Consensus 38 ~CP~Cg~~K~~F~~~~ 53 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEVE 53 (54)
T ss_dssp BCTTTCCBGGGEEECC
T ss_pred cCcCCCCcHHHceEcc
Confidence 6999999877776543
No 51
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.73 E-value=24 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.0
Q ss_pred cCCCcccccccccee
Q 028469 28 KCENCRAVADEYIEC 42 (208)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (208)
.||.|+.--+.+.+.
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 699999988777654
No 52
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=30.25 E-value=23 Score=25.85 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=15.0
Q ss_pred eccCCceEeecCCC-ccccc
Q 028469 18 QYSPGNIRLMKCEN-CRAVA 36 (208)
Q Consensus 18 ~ys~~~i~l~~C~~-C~~~~ 36 (208)
+-|..|||+..|++ |++--
T Consensus 25 qssdknirlkicdnscnqel 44 (109)
T 3u4z_A 25 QSSDKNIRLKICDNSCNQEL 44 (109)
T ss_dssp ECCSSCEEEEEECSSCSSCE
T ss_pred hcCCCceEEEeeccccccee
Confidence 45677999999998 88743
No 53
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=29.98 E-value=16 Score=24.61 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=16.8
Q ss_pred CceecccCcccccceeeccCCceEeecCCCccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~ 34 (208)
..||-.|+.+.+- +-+.|.+||.
T Consensus 19 k~ICrkC~ARnp~----------~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNPI----------RATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEECT----------TCSSCTTTCC
T ss_pred hhhhccccCcCCc----------ccccccCCCC
Confidence 4688899887643 5668888874
No 54
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.39 E-value=23 Score=22.74 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=25.2
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCcccc--ccccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV--ADEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~--~DkYiE~d~ 44 (208)
.++|-.|+.++..-+.... +..=. -.|..|++. -+.|.+.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 51 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAM-GKQWHVEHFVCAKCEKPFLGHRHYERKG 51 (66)
T ss_dssp CCEETTTTEECCSCEECCT-TSBEETTTCBCTTTCCBCSSSCCEEETT
T ss_pred CCCCcccCCEecceEEEEC-ccccccCcCEECCCCCCCCCCceEeECC
Confidence 4789999999864433222 22222 246777774 236887775
No 55
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.73 E-value=23 Score=23.83 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=4.7
Q ss_pred cCCCccc
Q 028469 28 KCENCRA 34 (208)
Q Consensus 28 ~C~~C~~ 34 (208)
.|++||-
T Consensus 45 vc~~CG~ 51 (60)
T 2zjr_Z 45 ICPNCGY 51 (60)
T ss_dssp CCTTTCB
T ss_pred EcCCCCc
Confidence 6777774
No 56
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=26.56 E-value=15 Score=29.60 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=18.7
Q ss_pred ceecccCcccccceeeccCCceEeecCCCccccccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADE 38 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~Dk 38 (208)
|.|.+|+..|.. -++| .-.|++|++. ++
T Consensus 43 ~ACp~CnKKV~~----~~~g---~~~CekC~~~-~~ 70 (172)
T 3u50_C 43 YRCTCQGKSVLK----YHGD---SFFCESCQQF-IN 70 (172)
T ss_dssp EECTTSCCCEEE----ETTT---EEEETTTTEE-CC
T ss_pred hhchhhCCEeee----CCCC---eEECCCCCCC-CC
Confidence 579999988752 1232 2379999987 53
No 57
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=25.59 E-value=26 Score=26.73 Aligned_cols=16 Identities=19% Similarity=0.775 Sum_probs=10.4
Q ss_pred ceecccCc-----ccccceee
Q 028469 3 YRCVKCGF-----RIKTLFVQ 18 (208)
Q Consensus 3 ~~CI~C~~-----~v~~Ly~~ 18 (208)
-.|+.||. |...++..
T Consensus 51 ~~Ci~C~~C~~~CP~~ai~~~ 71 (182)
T 3i9v_9 51 EKCIGCSLCAAACPAYAIYVE 71 (182)
T ss_dssp BSCCCCCHHHHHCTTCCEEEE
T ss_pred ccCcccccchhhCCcccEEee
Confidence 47999994 55555443
No 58
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.55 E-value=42 Score=24.51 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=21.9
Q ss_pred CceecccCcccccceeeccCCce---EeecCCCccccc----cccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNI---RLMKCENCRAVA----DEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i---~l~~C~~C~~~~----DkYiE~d~ 44 (208)
.++|-.|+.++..-+..-..+.. .--.|..|++.- +.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g 54 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 54 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETT
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECC
Confidence 46777888776543211112211 112566676653 35777665
No 59
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.09 E-value=23 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=18.8
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++. - ..-+=+|.+|++.
T Consensus 36 ky~CpfCgk~~vkR----~---a~GIW~C~~Cg~~ 63 (92)
T 3iz5_m 36 KYFCEFCGKFAVKR----K---AVGIWGCKDCGKV 63 (92)
T ss_dssp CBCCTTTCSSCBEE----E---ETTEEECSSSCCE
T ss_pred cccCcccCCCeeEe----c---CcceEEcCCCCCE
Confidence 5889999987 322 1 2245689999974
No 60
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=25.06 E-value=13 Score=30.96 Aligned_cols=9 Identities=22% Similarity=0.984 Sum_probs=6.0
Q ss_pred eecCCCccc
Q 028469 26 LMKCENCRA 34 (208)
Q Consensus 26 l~~C~~C~~ 34 (208)
.-.|++||.
T Consensus 145 ~p~C~~Cgg 153 (246)
T 1yc5_A 145 VPLCDDCNS 153 (246)
T ss_dssp SCBCTTTCC
T ss_pred CCCCCCCCC
Confidence 456777775
No 61
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.65 E-value=35 Score=23.37 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=24.5
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCcccc-cc-ccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV-AD-EYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~-~D-kYiE~d~ 44 (208)
.++|-.|+.++..-+.+.. +..-. -.|..|++. .+ .|++.|.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 71 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKAR-DKYRHPECFVCADCNLNLKQKGYFFVEG 71 (89)
T ss_dssp CCBCTTTCCBCCSCCEESS-SCEECTTTCCCSSSCCCTTTSCCEEETT
T ss_pred CCCcccCCCEecccEEEEC-CceECccCCEecCCCCCCCCCCeEeECC
Confidence 3689999999865433322 22222 246677764 33 5777764
No 62
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=24.63 E-value=12 Score=32.49 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=17.0
Q ss_pred ceecccCcccccce--eeccCCceEeecCCCcccc
Q 028469 3 YRCVKCGFRIKTLF--VQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly--~~ys~~~i~l~~C~~C~~~ 35 (208)
.+|..|+++.+.-. .+...+ ++-.|++|+..
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~--~~P~C~~Cgg~ 172 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMAD--RVPRCPVCTGV 172 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTT--CCCBCTTTCCB
T ss_pred EEECCCCCcCCHHHHHHHhhcC--CCCCCCCCCCc
Confidence 47999987643211 111111 34679999854
No 63
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=24.49 E-value=34 Score=30.59 Aligned_cols=36 Identities=19% Similarity=0.620 Sum_probs=23.9
Q ss_pred CceecccCcccc-ccee-e----------ccCCceEeecCCCcccccc
Q 028469 2 EYRCVKCGFRIK-TLFV-Q----------YSPGNIRLMKCENCRAVAD 37 (208)
Q Consensus 2 ~~~CI~C~~~v~-~Ly~-~----------ys~~~i~l~~C~~C~~~~D 37 (208)
.|.|-.||.+.+ .-.. . ++.+.+.+-+|++||+..+
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITR 166 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccc
Confidence 588999998742 2221 1 2334577789999998753
No 64
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.48 E-value=28 Score=22.90 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=23.6
Q ss_pred CceecccCcccc--cceeeccCCceEe---ecCCCcccccc--ccceehh
Q 028469 2 EYRCVKCGFRIK--TLFVQYSPGNIRL---MKCENCRAVAD--EYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~--~Ly~~ys~~~i~l---~~C~~C~~~~D--kYiE~d~ 44 (208)
.++|..||.++. +-..+.. |..-. -.|..|++.-+ .|.+.|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 59 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSN-GELYHEQCFVCAQCFQQFPEGLFYEFEG 59 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEET-TEEECTTTCCCTTTCCCCGGGCSEEETT
T ss_pred CCCchhcCCccCCCceEEEeC-ccEeccccCeECCCCCCCCCCCeEeECC
Confidence 478999999984 3222221 11222 24667776533 5777765
No 65
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.33 E-value=50 Score=22.32 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=24.3
Q ss_pred CceecccCcccccc-eeeccCCceE---eecCCCccc-cccccceehh
Q 028469 2 EYRCVKCGFRIKTL-FVQYSPGNIR---LMKCENCRA-VADEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~L-y~~ys~~~i~---l~~C~~C~~-~~DkYiE~d~ 44 (208)
.++|..|+.++..- +.+ ..+..= --.|..|++ ..++|+|.|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~-a~~~~wH~~CF~C~~C~~~L~~~~~~~~g 61 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL-ALDKQWHVSCFKCQTCSVILTGEYISKDG 61 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE-ETTEEECTTTCBCSSSCCBCSSCCEEETT
T ss_pred CCCCcCcCCeeCCCeEEE-ECCcccccccCCcCcCCCCcCCCeEEECC
Confidence 46899999998421 111 111111 235777776 4567888775
No 66
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=24.09 E-value=44 Score=21.49 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=15.7
Q ss_pred eecccCcccccceeec---cC--CceEeecCCCcccc
Q 028469 4 RCVKCGFRIKTLFVQY---SP--GNIRLMKCENCRAV 35 (208)
Q Consensus 4 ~CI~C~~~v~~Ly~~y---s~--~~i~l~~C~~C~~~ 35 (208)
.|.+||+. +..|.+- |. +--.--.|.+|++.
T Consensus 17 ~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 17 TCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp CCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred ECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 48888873 2333332 11 11233468888764
No 67
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=23.86 E-value=25 Score=24.73 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=17.6
Q ss_pred CceecccC--c-----ccccceeeccCCceEeecCCCccccc
Q 028469 2 EYRCVKCG--F-----RIKTLFVQYSPGNIRLMKCENCRAVA 36 (208)
Q Consensus 2 ~~~CI~C~--~-----~v~~Ly~~ys~~~i~l~~C~~C~~~~ 36 (208)
.-.|+.|| . |...+...-+.-.+....|..|+.-+
T Consensus 5 ~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~ 46 (106)
T 7fd1_A 5 TDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCE 46 (106)
T ss_dssp CGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCTTG
T ss_pred ccccCCccCcHHHHHcCccceEcCCCcEEECcccCCChhhhH
Confidence 34699998 2 44443222111123335677777543
No 68
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.83 E-value=23 Score=25.99 Aligned_cols=27 Identities=26% Similarity=0.719 Sum_probs=18.5
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++. - ..-+=+|.+|++.
T Consensus 36 ky~CpfCgk~~vkR----~---a~GIW~C~~C~~~ 63 (92)
T 3izc_m 36 RYDCSFCGKKTVKR----G---AAGIWTCSCCKKT 63 (92)
T ss_dssp CCCCSSSCSSCCEE----E---ETTEEECTTTCCE
T ss_pred CCcCCCCCCceeee----c---ccceEEcCCCCCE
Confidence 5889999976 322 1 2235689999874
No 69
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=23.72 E-value=30 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=14.1
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.+.|..||.+. +.+|.+|+.+
T Consensus 15 ~~~C~~C~~~~-------------~~~Cs~Ck~v 35 (70)
T 2d8q_A 15 RPRCAYCSAEA-------------SKRCSRCQNE 35 (70)
T ss_dssp CCBCSSSCCBC-------------CCBCTTTSCC
T ss_pred CCcCCCCCCcc-------------cccCCCCCCE
Confidence 46788888751 3478888754
No 70
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.71 E-value=30 Score=22.72 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=5.0
Q ss_pred ceecccCcc
Q 028469 3 YRCVKCGFR 11 (208)
Q Consensus 3 ~~CI~C~~~ 11 (208)
..|.+||..
T Consensus 19 ~fCPkCG~~ 27 (55)
T 2k4x_A 19 RFCPRCGPG 27 (55)
T ss_dssp CCCTTTTTT
T ss_pred ccCcCCCCc
Confidence 346666654
No 71
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.50 E-value=21 Score=25.78 Aligned_cols=27 Identities=26% Similarity=0.732 Sum_probs=18.6
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++. - ..-+=+|.+|++.
T Consensus 35 ky~CpfCGk~~vkR----~---a~GIW~C~kCg~~ 62 (83)
T 3j21_i 35 KHTCPVCGRKAVKR----I---STGIWQCQKCGAT 62 (83)
T ss_dssp CBCCSSSCSSCEEE----E---ETTEEEETTTCCE
T ss_pred ccCCCCCCCceeEe----c---CcCeEEcCCCCCE
Confidence 5889999987 322 1 2245689999874
No 72
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=23.17 E-value=22 Score=24.79 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=15.6
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
+..|.+|..-+ .-+.||+|+..
T Consensus 11 ~~AC~~C~~~~------------~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT------------SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE------------SSSSCTTTCCC
T ss_pred hhhHHhCCccc------------cCCcCCCccCC
Confidence 56899998833 22379999953
No 73
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=23.05 E-value=43 Score=23.41 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=11.0
Q ss_pred CceEeecCCCccc
Q 028469 22 GNIRLMKCENCRA 34 (208)
Q Consensus 22 ~~i~l~~C~~C~~ 34 (208)
+.+++..|++|+-
T Consensus 29 ~~i~vdi~s~~HP 41 (73)
T 1nkw_Y 29 PEIHVDVWSGVHP 41 (73)
T ss_pred CCEEEEECCCCCc
Confidence 3599999999983
No 74
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=22.93 E-value=28 Score=29.06 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=15.7
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.+|..|++..+.=+. ...+ ..-.|++||..
T Consensus 122 ~~C~~C~~~~~~~~~-~~~~--~~p~C~~Cgg~ 151 (249)
T 1m2k_A 122 VRCTSCNNSFEVESA-PKIP--PLPKCDKCGSL 151 (249)
T ss_dssp EEESSSSCEEECSSC-CCSS--SCCBCSSSSSB
T ss_pred eEeCCCCCcccchhh-ccCC--CCCCCCCCCCC
Confidence 468888874221100 1111 24578888864
No 75
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.61 E-value=45 Score=21.61 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=10.2
Q ss_pred cCCCccccccccc
Q 028469 28 KCENCRAVADEYI 40 (208)
Q Consensus 28 ~C~~C~~~~DkYi 40 (208)
.||.|+.--+.+.
T Consensus 38 ~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 38 ACPVCGASKDAFE 50 (52)
T ss_dssp CCSSSCCCTTSCE
T ss_pred cCCCCCCcHHHcE
Confidence 6999998776654
No 76
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.22 E-value=34 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=24.9
Q ss_pred CceecccCcccccceeeccCC--ceEeecCCCccccc---cccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRAVA---DEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~--~i~l~~C~~C~~~~---DkYiE~d~ 44 (208)
.++|-.|+.++..-+....+. +..--.|..|++.- +.|.+.|.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~ 52 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGS 52 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETT
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCC
Confidence 478999999986543332211 11123577787753 46766654
No 77
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=22.04 E-value=12 Score=32.36 Aligned_cols=35 Identities=31% Similarity=0.670 Sum_probs=21.8
Q ss_pred eecccCcccccceeeccCC-ceEeecCCCccc------------cccc--cceehh
Q 028469 4 RCVKCGFRIKTLFVQYSPG-NIRLMKCENCRA------------VADE--YIECEI 44 (208)
Q Consensus 4 ~CI~C~~~v~~Ly~~ys~~-~i~l~~C~~C~~------------~~Dk--YiE~d~ 44 (208)
.|-+|+.++ |+++ .--...||+|++ ++|+ +.|++.
T Consensus 32 kc~~~~~~~------y~~~l~~~~~v~p~~~~~~r~~arerI~~L~D~gsF~El~~ 81 (285)
T 2f9i_B 32 KCPKCKKIM------YTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDK 81 (285)
T ss_dssp ECTTTCCEE------EHHHHHHTTTBCTTTCCBCCCCHHHHHHHTSCTTCCEEEST
T ss_pred hhHhhCCcc------chhhhHHhcCcCCCCCCCCCCCHHHHHHHHccCCCcEEECC
Confidence 588888865 3321 101457899987 4666 777765
No 78
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=21.67 E-value=31 Score=26.81 Aligned_cols=31 Identities=29% Similarity=0.680 Sum_probs=19.6
Q ss_pred ceecccCcccccceeeccCCceEeecCCCccccccccceeh
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECE 43 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~DkYiE~d 43 (208)
.+|-.||+.. |-|. ..|++|+...-+++|..
T Consensus 48 ~rC~~CG~~~------fPPr----~~Cp~C~s~~~e~v~ls 78 (145)
T 2gnr_A 48 SKCSKCGRIF------VPAR----SYCEHCFVKIENYVEIN 78 (145)
T ss_dssp EECTTTCCEE------ESCC----SEETTTTEECCEEEECC
T ss_pred EEECCCCcEE------eCCC----CCCCCCCCCccEEEEcc
Confidence 4688888754 3332 26888887755666654
No 79
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=29 Score=22.41 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=24.2
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCcccc--ccccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV--ADEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~--~DkYiE~d~ 44 (208)
.++|-.|+.++..=+.+.. +..=. -.|..|++. -+.|.+.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~~ 51 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQ-DQPWHADCFVCVTCSKKLAGQRFTAVED 51 (69)
T ss_dssp CCCCSSSCCCCCTTCEEET-TEEECTTTTBCTTTCCBCTTSCEEECSS
T ss_pred cCCCcccCCEeCcceEEEC-ccccccCcCEECCCCCCCCCCccEeECC
Confidence 4789999999854332221 11112 247777775 346777664
No 80
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.35 E-value=25 Score=29.39 Aligned_cols=30 Identities=17% Similarity=0.630 Sum_probs=15.2
Q ss_pred ceecccCccccc--ceeeccCCceEeecCCCccc
Q 028469 3 YRCVKCGFRIKT--LFVQYSPGNIRLMKCENCRA 34 (208)
Q Consensus 3 ~~CI~C~~~v~~--Ly~~ys~~~i~l~~C~~C~~ 34 (208)
.+|..|++..+. +.....++ ++-.|++||.
T Consensus 124 ~~C~~C~~~~~~~~~~~~~~~~--~~p~C~~Cgg 155 (253)
T 1ma3_A 124 LDCLDCHETYDWSEFVEDFNKG--EIPRCRKCGS 155 (253)
T ss_dssp EEETTTCCEEEGGGTHHHHHTT--CCCCCTTTCC
T ss_pred eeeCCCCCcCcHHHHHHHhccC--CCCCCCCCCC
Confidence 468888874211 11101122 2457888886
No 81
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.26 E-value=22 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.839 Sum_probs=18.7
Q ss_pred CceecccCcc-cccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~-v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. ++. -+ .-+=+|.+|++.
T Consensus 36 ky~CpfCgk~~vKR----~a---~GIW~C~kCg~~ 63 (103)
T 4a17_Y 36 KYGCPFCGKVAVKR----AA---VGIWKCKPCKKI 63 (103)
T ss_dssp CEECTTTCCEEEEE----EE---TTEEEETTTTEE
T ss_pred CCCCCCCCCceeee----cC---cceEEcCCCCCE
Confidence 5889999987 332 12 235689999974
No 82
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.99 E-value=40 Score=23.12 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=22.2
Q ss_pred CceecccCcccccceeeccCCceEe---ecCCCccccc--cccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA--DEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l---~~C~~C~~~~--DkYiE~d~ 44 (208)
.++|-.|+.++..-+... .+..-. -.|..|++.- +.|.+.|.
T Consensus 25 ~~~C~~C~~~I~~~~v~a-~~~~~H~~CF~C~~C~~~L~~~~f~~~~g 71 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVA-LGKSWHPEEFNCAHCKNTMAYIGFVEEKG 71 (90)
T ss_dssp CCBBSSSCCBCCSCEEEE-TTEEECTTTCBCSSSCCBCSSSCBEESSS
T ss_pred CCCCccCCCEecceEEEE-CCccccccCCccCCCCCCCCCCEeEeECC
Confidence 467888998875433322 122222 2566666642 24666553
No 83
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.87 E-value=42 Score=27.60 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.6
Q ss_pred ceecccCcccccceeeccCCceEeecCCCcccccccc
Q 028469 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEY 39 (208)
Q Consensus 3 ~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~~DkY 39 (208)
-.|..||.. ++ +.-|..|+ ..|-+|+.- |++
T Consensus 15 ~~CP~Cg~~-d~-~~~~~dg~---~~C~~Cg~~-~~~ 45 (255)
T 1nui_A 15 IPCDNCGSS-DG-NSLFSDGH---TFCYVCEKW-TAG 45 (255)
T ss_dssp ECCSSSCCS-SC-EEEETTSC---EEETTTCCE-EC-
T ss_pred CcCCCCCCC-CC-ceEeCCCC---eecccCCCc-CCC
Confidence 369999985 44 45455553 799999964 443
No 84
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=20.66 E-value=23 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=18.9
Q ss_pred CceecccCcccccceeeccCCceEeecCCCcccc
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~~C~~C~~~ 35 (208)
.|.|..||.. .+.+.= . -+=+|++|++.
T Consensus 60 kytCPfCGk~--~vKR~a-v---GIW~C~~Cgk~ 87 (116)
T 3cc2_Z 60 DHACPNCGED--RVDRQG-T---GIWQCSYCDYK 87 (116)
T ss_dssp CEECSSSCCE--EEEEEE-T---TEEEETTTCCE
T ss_pred CCcCCCCCCc--eeEecC-c---eeEECCCCCCE
Confidence 5889999983 232222 2 35689999985
No 85
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=20.50 E-value=27 Score=29.22 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=20.5
Q ss_pred Ccee--cccCccccccee-eccCCceEeecCCCccc
Q 028469 2 EYRC--VKCGFRIKTLFV-QYSPGNIRLMKCENCRA 34 (208)
Q Consensus 2 ~~~C--I~C~~~v~~Ly~-~ys~~~i~l~~C~~C~~ 34 (208)
.+.| -.||+....-+. +-+++....+.|++|+.
T Consensus 141 ~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~ 176 (268)
T 2vl6_A 141 TYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 176 (268)
T ss_dssp EEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCC
T ss_pred EEECCCCCCCCEEeeeecccCCCcccCCccCCCCCC
Confidence 4789 999986543321 11223345678999997
No 86
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.41 E-value=34 Score=22.87 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=23.8
Q ss_pred CceecccCcccccceeeccCCceEee---cCCCccccc--cccceehh
Q 028469 2 EYRCVKCGFRIKTLFVQYSPGNIRLM---KCENCRAVA--DEYIECEI 44 (208)
Q Consensus 2 ~~~CI~C~~~v~~Ly~~ys~~~i~l~---~C~~C~~~~--DkYiE~d~ 44 (208)
.++|-.|+.++..-+.+.. +..-.. .|..|++.- +.|.+.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 61 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLR-DRHRHPECYVCTDCGTNLKQKGHFFVED 61 (79)
T ss_dssp CCCCSSSCCCCCSSCEECS-SCEECTTTTSCSSSCCCHHHHCCEESSS
T ss_pred CCccccCCCCccCcEEEEC-cceeCcCcCeeCCCCCCCCCCCeEeECC
Confidence 4689999999865333222 222222 466676642 24777664
No 87
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.24 E-value=36 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=25.2
Q ss_pred ceecccCcccc--cceeeccCC--ceEeecCCCccccc---cccceehh
Q 028469 3 YRCVKCGFRIK--TLFVQYSPG--NIRLMKCENCRAVA---DEYIECEI 44 (208)
Q Consensus 3 ~~CI~C~~~v~--~Ly~~ys~~--~i~l~~C~~C~~~~---DkYiE~d~ 44 (208)
++|..|+.++. ....+.... +..=-.|..|++.- |+|.+.|.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g 57 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINS 57 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCC
Confidence 48999999986 333222211 11223577788764 56888774
Done!