BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028473
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1KSY4|RL35_NEIMF 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpmI PE=3
SV=1
Length = 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ + +G V+R H KRH K+ K+KR+LR ++V
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMV 50
>sp|P66274|RL35_NEIMB 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpmI PE=3 SV=1
Length = 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ + +G V+R H KRH K+ K+KR+LR ++V
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMV 50
>sp|P66273|RL35_NEIMA 50S ribosomal protein L35 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpmI PE=3 SV=1
Length = 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ + +G V+R H KRH K+ K+KR+LR ++V
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMV 50
>sp|Q5F9U2|RL35_NEIG1 50S ribosomal protein L35 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpmI PE=3 SV=1
Length = 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ + +G V+R H KRH K+ K+KR+LR ++V
Sbjct: 3 KMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMV 50
>sp|Q6ADC8|RL35_LEIXX 50S ribosomal protein L35 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpmI PE=3 SV=1
Length = 64
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RF+ G+V + G RHN +K KRRL +VP AK ++++
Sbjct: 3 KQKTHSGAKKRFKITGSGKVMKQQAGMRHNLEVKGSDRKRRLNADQVVPEVDAKFVRRM 61
>sp|B0RHC1|RL35_CLAMS 50S ribosomal protein L35 OS=Clavibacter michiganensis subsp.
sepedonicus (strain ATCC 33113 / JCM 9667) GN=rpmI PE=3
SV=1
Length = 64
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RF+ G++ + G RHN +KS K K RL Q + A KV KKL
Sbjct: 3 KQKTHSGAKKRFKVTGSGKIMKQQAGMRHNLEVKSSKRKARLNQDQPLAKADMKVAKKL 61
>sp|A0PZN3|RL35_CLONN 50S ribosomal protein L35 OS=Clostridium novyi (strain NT) GN=rpmI
PE=3 SV=1
Length = 65
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ RF+ G+++R K H KS K+KR LR+ LV A KVMKKL
Sbjct: 3 KMKTHRGAAKRFKKTGSGKLKRAKAFKSHILTKKSSKTKRNLRKSGLVSEAQEKVMKKL 61
>sp|Q8R9C3|RL35_THETN 50S ribosomal protein L35 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpmI PE=3 SV=1
Length = 67
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 144 KIKMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKK 203
KIKMK++ RF+ + G+V+R K H KS K KRRLR+ + A AK +K+
Sbjct: 3 KIKMKTHRGAAKRFKVLKSGKVKRMKAYKSHLLTHKSSKRKRRLRKATYLEGASAKTIKR 62
Query: 204 L 204
L
Sbjct: 63 L 63
>sp|A5N257|RL35_CLOK5 50S ribosomal protein L35 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rpmI PE=3 SV=1
Length = 65
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ S RF+ G+++R K H KS+K+KR LR+ A V KVMKKL
Sbjct: 3 KMKTKKSVAKRFKLTGTGKLKRAQAFKSHILTKKSRKTKRNLRKTAYVSETQEKVMKKL 61
>sp|B9E5V9|RL35_CLOK1 50S ribosomal protein L35 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpmI PE=3 SV=1
Length = 65
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ S RF+ G+++R K H KS+K+KR LR+ A V KVMKKL
Sbjct: 3 KMKTKKSVAKRFKLTGTGKLKRAQAFKSHILTKKSRKTKRNLRKTAYVSETQEKVMKKL 61
>sp|A5CSK2|RL35_CLAM3 50S ribosomal protein L35 OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=rpmI PE=3 SV=1
Length = 64
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RF+ G++ + G RHN +KS K RL Q + A KV KKL
Sbjct: 3 KQKTHSGAKKRFKVTGTGKIMKQQAGMRHNLEVKSSGRKARLNQDQPLAKADMKVAKKL 61
>sp|Q1GZR9|RL35_METFK 50S ribosomal protein L35 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rpmI PE=3 SV=1
Length = 65
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ + +G+V+R H RH K+ K KR LR A++
Sbjct: 3 KMKTKSSAKKRFKFLGNGKVKRTHSHLRHILTKKTTKQKRNLRGTAII 50
>sp|Q6MDC2|RL35_PARUW 50S ribosomal protein L35 OS=Protochlamydia amoebophila (strain
UWE25) GN=rpmI PE=3 SV=1
Length = 64
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + S+FR G+++ G+RH K+ K KR+LR+P LV + K K+L
Sbjct: 3 KMKTRKAVASKFRVTATGKLKASRPGRRHKLTGKTPKRKRQLRRPGLVDDGHLKTYKRL 61
>sp|A3DES7|RL35_CLOTH 50S ribosomal protein L35 OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rpmI PE=3 SV=1
Length = 65
Score = 38.1 bits (87), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K+K++SS K RF+ G+V+R K H K+ K KR LR+ + A A V+KKL
Sbjct: 3 KIKTHSSSKKRFKLTGTGKVKRAKAYKSHILTKKTSKRKRNLRKSTIASSANASVIKKL 61
>sp|A6WCU3|RL35_KINRD 50S ribosomal protein L35 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rpmI PE=3 SV=1
Length = 64
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RFR G+V R KRH +KS K RRL +V A K +KKL
Sbjct: 3 KNKTHSGAKKRFRITGSGKVMREQANKRHLLEVKSSKRTRRLSVDQVVSPADVKKIKKL 61
>sp|A1R567|RL35_ARTAT 50S ribosomal protein L35 OS=Arthrobacter aurescens (strain TC1)
GN=rpmI PE=3 SV=1
Length = 64
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++S K RF+ G+++R +RH KS + RRL LV AKV+KK+
Sbjct: 3 KMKTHSGAKKRFKLTGTGKLKRQQANRRHYLEHKSSRLTRRLAGDKLVFKGDAKVIKKM 61
>sp|Q5FIW8|RL35_LACAC 50S ribosomal protein L35 OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=rpmI PE=3 SV=1
Length = 66
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ + RF+ +G ++R H H H K+KK +R LR+PA+V + K +K++
Sbjct: 3 KMKTHRASAKRFKRTANGGLKRHHAFTGHRFHGKTKKQRRHLRKPAMVSRSDMKRIKQM 61
>sp|A0JV02|RL35_ARTS2 50S ribosomal protein L35 OS=Arthrobacter sp. (strain FB24) GN=rpmI
PE=3 SV=1
Length = 64
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++S K RF+ G++RR +RH KS + RRL +V AKV++K+
Sbjct: 3 KMKTHSGAKKRFKLTGSGKLRRQQANRRHYLEHKSSRLTRRLAGDKIVFKGDAKVIRKM 61
>sp|B8HGA8|RL35_ARTCA 50S ribosomal protein L35 OS=Arthrobacter chlorophenolicus (strain
A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rpmI PE=3
SV=1
Length = 64
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++S K RF+ G++RR +RH KS + RRL +V AKV++K+
Sbjct: 3 KMKTHSGAKKRFKLTGSGKLRRQQANRRHYLEHKSSRLTRRLAGDKIVFKGDAKVIRKM 61
>sp|Q7NYC4|RL35_CHRVO 50S ribosomal protein L35 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpmI PE=3 SV=1
Length = 65
Score = 37.0 bits (84), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K R + + G +R H KRH K+ K+KR+LR ++V
Sbjct: 3 KMKTKSSAKKRLKVLGGGGFKRAHAFKRHILTKKTTKNKRQLRGTSMV 50
>sp|Q255M2|RL35_CHLFF 50S ribosomal protein L35 OS=Chlamydophila felis (strain Fe/C-56)
GN=rpmI PE=3 SV=1
Length = 64
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH KS + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKKSSQEKRNLSKQPLVDKGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|Q822B3|RL35_CHLCV 50S ribosomal protein L35 OS=Chlamydophila caviae (strain GPIC)
GN=rpmI PE=3 SV=1
Length = 64
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH KS + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKKSSQEKRNLSKQPLVDKGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|Q5L5A6|RL35_CHLAB 50S ribosomal protein L35 OS=Chlamydophila abortus (strain S26/3)
GN=rpmI PE=3 SV=1
Length = 64
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH KS + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKKSSQEKRNLSKQPLVDKGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|C5CAP9|RL35_MICLC 50S ribosomal protein L35 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rpmI PE=3 SV=1
Length = 64
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++S K RFR G++ R +RH KS + RRL+ LV K +K++
Sbjct: 3 KMKTHSGAKKRFRVTGSGKIMRQQANRRHYLEHKSSRLTRRLKGDQLVSKGSIKQIKRM 61
>sp|Q0SRT6|RL35_CLOPS 50S ribosomal protein L35 OS=Clostridium perfringens (strain SM101
/ Type A) GN=rpmI PE=3 SV=1
Length = 65
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ RF+ G+++R H H KS K KR LR+ V A K MKKL
Sbjct: 3 KMKTHRGAAKRFKKTGTGKLKRAHAFTSHILTKKSAKRKRNLRKTGYVSTAQEKAMKKL 61
>sp|Q8XJ68|RL35_CLOPE 50S ribosomal protein L35 OS=Clostridium perfringens (strain 13 /
Type A) GN=rpmI PE=3 SV=1
Length = 65
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ RF+ G+++R H H KS K KR LR+ V A K MKKL
Sbjct: 3 KMKTHRGAAKRFKKTGTGKLKRAHAFTSHILTKKSAKRKRNLRKTGYVSTAQEKAMKKL 61
>sp|Q0TP67|RL35_CLOP1 50S ribosomal protein L35 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rpmI PE=3 SV=1
Length = 65
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ RF+ G+++R H H KS K KR LR+ V A K MKKL
Sbjct: 3 KMKTHRGAAKRFKKTGTGKLKRAHAFTSHILTKKSAKRKRNLRKTGYVSTAQEKAMKKL 61
>sp|A9KHG8|RL35_CLOPH 50S ribosomal protein L35 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rpmI PE=3 SV=1
Length = 65
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K+K+ + RF+ G+++R GK+H KS+K+KR LR+ ++ + K MKK+
Sbjct: 3 KLKTSKAAAKRFKVTGTGKLKRMKAGKQHILTKKSQKTKRNLRKATMMDPSNEKNMKKI 61
>sp|B4SB91|RL35_PELPB 50S ribosomal protein L35 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rpmI PE=3 SV=1
Length = 64
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMKS+ RF+T + G+++R HN K+ K RRL Q AL+ AK +K++
Sbjct: 3 KMKSHRGACKRFKTTSSGKIKRERMNGSHNLEKKNSKRCRRLHQTALLEGLKAKQIKRM 61
>sp|C1A494|RL35_GEMAT 50S ribosomal protein L35 OS=Gemmatimonas aurantiaca (strain T-27 /
DSM 14586 / JCM 11422 / NBRC 100505) GN=rpmI PE=3 SV=1
Length = 65
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPL-AYAKVMKKL 204
KMK++S K RF G+VRR K H S K KR LR+P +V AK +K+L
Sbjct: 3 KMKTHSGAKKRFSVTGSGKVRRLKAYKSHILTKMSGKKKRDLRRPTIVETNGEAKRIKRL 62
>sp|Q2RHN1|RL35_MOOTA 50S ribosomal protein L35 OS=Moorella thermoacetica (strain ATCC
39073) GN=rpmI PE=3 SV=1
Length = 66
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK++ R R G+V+R+ K H K+ K KRRLR PALV
Sbjct: 3 KMKTHRGAAKRLRVTASGKVKRFRAYKSHLLASKTPKQKRRLRHPALV 50
>sp|Q6A7V2|RL35_PROAC 50S ribosomal protein L35 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rpmI PE=3 SV=1
Length = 68
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMKS+S K RF+ G+V GKRH KS + RRL ++ A +KKL
Sbjct: 3 KMKSHSGTKKRFKVTGSGKVTARKAGKRHLNEHKSSRVTRRLTGETVLSKGEAAKVKKL 61
>sp|A4FKE4|RL35_SACEN 50S ribosomal protein L35 OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=rpmI PE=3 SV=1
Length = 64
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S RFR G++RR G+RH KS + RRL V A K + KL
Sbjct: 3 KNKTHSGTAKRFRVTGSGKLRREQAGRRHILEKKSSRVTRRLEGTEAVAKADVKRINKL 61
>sp|A6LTR4|RL35_CLOB8 50S ribosomal protein L35 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ RFR G+++R + H KS K+KR LR+ V + KVMKKL
Sbjct: 3 KMKTHRGAAKRFRKTGTGKLKRGKAFRSHILTKKSSKTKRHLRKAGYVSDSQLKVMKKL 61
>sp|Q049G2|RL35_LACDB 50S ribosomal protein L35 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rpmI PE=3 SV=1
Length = 66
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ + RF+ +G ++R H H H K+KK +R LR+ A+V + K +K++
Sbjct: 3 KMKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQM 61
>sp|Q1G9B3|RL35_LACDA 50S ribosomal protein L35 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=rpmI PE=3
SV=1
Length = 66
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK++ + RF+ +G ++R H H H K+KK +R LR+ A+V + K +K++
Sbjct: 3 KMKTHRASAKRFKRTGNGGLKRHHAFTGHRFHGKTKKQRRHLRKAAMVSRSDLKRIKQM 61
>sp|B2V5A0|RL35_CLOBA 50S ribosomal protein L35 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMKS+ RF+ G+++R K H KS K+KR LR+ V + KVMKKL
Sbjct: 3 KMKSHRGAAKRFKKTGTGKLKRAKAFKSHILTKKSPKTKRNLRKGGYVSKSEEKVMKKL 61
>sp|P66267|RL35_CHLTR 50S ribosomal protein L35 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpmI PE=3 SV=1
Length = 64
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH +S + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKRSSQQKRNLSKQPLVDQGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|Q3KKK5|RL35_CHLTA 50S ribosomal protein L35 OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=rpmI PE=3 SV=1
Length = 64
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH +S + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKRSSQQKRNLSKQPLVDQGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|P66268|RL35_CHLMU 50S ribosomal protein L35 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpmI PE=3 SV=1
Length = 64
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKLN 205
KMKS S +RF+ GQ++R GKRH +S + KR L + LV + K++
Sbjct: 3 KMKSNKSVAARFKLTGSGQLKRTRPGKRHKLSKRSSQQKRNLSKQPLVDQGQVGMYKRMM 62
Query: 206 FC 207
Sbjct: 63 LV 64
>sp|B2TS60|RL35_CLOBB 50S ribosomal protein L35 OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMKS+ RF+ G+++R K H KS K+KR LR+ V + KVMKKL
Sbjct: 3 KMKSHRGAAKRFKKTGTGKLKRAKAFKSHILTKKSPKTKRNLRKGGYVSKSQEKVMKKL 61
>sp|B1W353|RL35_STRGG 50S ribosomal protein L35 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpmI PE=3 SV=1
Length = 64
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S RF+ G+V R GKRH KS K R L +V A AK +KKL
Sbjct: 3 KNKTHSGASKRFKITGSGKVLRERAGKRHLLEHKSSKKTRSLTGTVVVAPADAKKIKKL 61
>sp|Q83GT1|RL35_TROWT 50S ribosomal protein L35 OS=Tropheryma whipplei (strain Twist)
GN=rpmI PE=3 SV=1
Length = 65
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RF+ G V R G RHN +S + RRL V A +K+ +KL
Sbjct: 4 KQKTHSGAKKRFKLTGSGSVSRARAGMRHNFEHRSSRVTRRLTGRQFVSDADSKLARKL 62
>sp|Q83HH1|RL35_TROW8 50S ribosomal protein L35 OS=Tropheryma whipplei (strain TW08/27)
GN=rpmI PE=3 SV=1
Length = 65
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
K K++S K RF+ G V R G RHN +S + RRL V A +K+ +KL
Sbjct: 4 KQKTHSGAKKRFKLTGSGSVSRARAGMRHNFEHRSSRVTRRLTGRQFVSDADSKLARKL 62
>sp|A6GY20|RL35_FLAPJ 50S ribosomal protein L35 OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALV 193
KMK+ SS K RF+ G+++R H K H KSKK K L ALV
Sbjct: 3 KMKTKSSAKKRFKVTGSGKIKRKHAFKSHILTKKSKKRKLALTHSALV 50
>sp|B1L0T5|RL35_CLOBM 50S ribosomal protein L35 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + RF+ G+++R K H KS+K+KR LR+ V + KVMKK+
Sbjct: 3 KMKTKRAAAKRFKVTGTGKLKRAKAFKSHILTKKSRKTKRNLRKAGYVSESQEKVMKKV 61
>sp|A7GI03|RL35_CLOBL 50S ribosomal protein L35 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + RF+ G+++R K H KS+K+KR LR+ V + KVMKK+
Sbjct: 3 KMKTKRAAAKRFKVTGTGKLKRAKAFKSHILTKKSRKTKRNLRKAGYVSESQEKVMKKV 61
>sp|B1IMV1|RL35_CLOBK 50S ribosomal protein L35 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + RF+ G+++R K H KS+K+KR LR+ V + KVMKK+
Sbjct: 3 KMKTKRAAAKRFKVTGTGKLKRAKAFKSHILTKKSRKTKRNLRKAGYVSESQEKVMKKV 61
>sp|C1FKM8|RL35_CLOBJ 50S ribosomal protein L35 OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + RF+ G+++R K H KS+K+KR LR+ V + KVMKK+
Sbjct: 3 KMKTKRAAAKRFKVTGTGKLKRAKAFKSHILTKKSRKTKRNLRKAGYVSESQEKVMKKV 61
>sp|A5I6L6|RL35_CLOBH 50S ribosomal protein L35 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rpmI PE=3 SV=1
Length = 65
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 146 KMKSYSSYKSRFRTMNDGQVRRWHEGKRHNAHLKSKKSKRRLRQPALVPLAYAKVMKKL 204
KMK+ + RF+ G+++R K H KS+K+KR LR+ V + KVMKK+
Sbjct: 3 KMKTKRAAAKRFKVTGTGKLKRAKAFKSHILTKKSRKTKRNLRKAGYVSESQEKVMKKV 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,344,399
Number of Sequences: 539616
Number of extensions: 2759164
Number of successful extensions: 7595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 7127
Number of HSP's gapped (non-prelim): 494
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)