Query 028475
Match_columns 208
No_of_seqs 234 out of 1919
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.5E-21 3.3E-26 148.5 15.9 83 19-101 31-114 (144)
2 KOG0149 Predicted RNA-binding 99.8 1.3E-20 2.9E-25 149.6 11.8 85 16-100 6-90 (247)
3 TIGR01659 sex-lethal sex-letha 99.8 1.8E-18 3.8E-23 148.9 15.2 83 19-101 190-275 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.2E-17 2.7E-22 143.8 13.1 83 20-102 267-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 2.3E-17 5E-22 142.0 11.8 84 17-100 102-186 (346)
6 TIGR01648 hnRNP-R-Q heterogene 99.7 2E-16 4.4E-21 143.3 18.0 75 21-103 232-309 (578)
7 KOG0113 U1 small nuclear ribon 99.7 6.6E-17 1.4E-21 132.5 11.9 103 13-115 92-196 (335)
8 KOG0148 Apoptosis-promoting RN 99.7 1.8E-16 3.8E-21 128.5 13.9 81 17-103 159-240 (321)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.4E-17 1.4E-21 139.3 11.9 81 21-101 2-83 (352)
10 PF00076 RRM_1: RNA recognitio 99.7 1.9E-16 4.2E-21 104.8 9.6 69 25-94 1-70 (70)
11 KOG0125 Ataxin 2-binding prote 99.7 8.2E-17 1.8E-21 133.4 9.3 91 16-108 90-181 (376)
12 KOG0121 Nuclear cap-binding pr 99.7 9.2E-17 2E-21 116.8 8.0 79 20-98 34-113 (153)
13 KOG0107 Alternative splicing f 99.7 4.8E-16 1E-20 118.7 10.7 79 20-103 8-87 (195)
14 KOG0122 Translation initiation 99.7 4.3E-16 9.3E-21 124.6 9.8 84 18-101 185-269 (270)
15 KOG4207 Predicted splicing fac 99.7 4.6E-16 1E-20 121.8 9.3 87 16-102 7-94 (256)
16 PLN03120 nucleic acid binding 99.7 8.6E-16 1.9E-20 125.6 10.8 76 21-99 3-78 (260)
17 KOG0105 Alternative splicing f 99.7 1.1E-15 2.3E-20 117.9 10.6 77 20-99 4-81 (241)
18 KOG0117 Heterogeneous nuclear 99.6 2.1E-15 4.5E-20 129.4 12.5 82 19-108 256-338 (506)
19 PF14259 RRM_6: RNA recognitio 99.6 2.6E-15 5.6E-20 100.0 9.6 69 25-94 1-70 (70)
20 TIGR01645 half-pint poly-U bin 99.6 4.5E-15 9.7E-20 135.0 12.6 82 20-101 202-284 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.6 3.3E-14 7.2E-19 130.0 17.2 83 19-102 282-365 (562)
22 TIGR01645 half-pint poly-U bin 99.6 3.7E-15 8E-20 135.5 10.3 79 20-98 105-184 (612)
23 PLN03121 nucleic acid binding 99.6 1.5E-14 3.2E-19 116.8 10.7 76 21-99 4-79 (243)
24 TIGR01622 SF-CC1 splicing fact 99.6 1.4E-14 3.1E-19 129.0 11.7 82 19-100 86-167 (457)
25 TIGR01628 PABP-1234 polyadenyl 99.6 1.6E-14 3.4E-19 132.0 11.9 77 23-99 1-78 (562)
26 KOG0111 Cyclophilin-type pepti 99.6 5.5E-15 1.2E-19 116.8 5.8 85 18-102 6-91 (298)
27 PLN03213 repressor of silencin 99.5 2.4E-14 5.1E-19 124.5 9.9 79 18-100 6-87 (759)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.5 7.4E-14 1.6E-18 126.0 13.5 82 20-101 293-375 (509)
29 KOG0148 Apoptosis-promoting RN 99.5 2E-14 4.4E-19 116.6 8.6 83 20-102 60-143 (321)
30 TIGR01648 hnRNP-R-Q heterogene 99.5 3E-14 6.6E-19 129.2 10.5 75 20-95 56-132 (578)
31 TIGR01622 SF-CC1 splicing fact 99.5 8.1E-14 1.8E-18 124.2 12.5 79 21-99 185-264 (457)
32 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 3.1E-18 90.2 9.6 71 24-96 1-72 (72)
33 KOG0130 RNA-binding protein RB 99.5 5.7E-14 1.2E-18 103.2 7.8 87 16-102 66-153 (170)
34 KOG0117 Heterogeneous nuclear 99.5 1.1E-13 2.4E-18 118.9 9.9 79 20-98 81-161 (506)
35 smart00360 RRM RNA recognition 99.5 2.2E-13 4.7E-18 88.9 8.9 70 27-96 1-71 (71)
36 KOG0116 RasGAP SH3 binding pro 99.5 5.4E-13 1.2E-17 116.5 13.6 83 21-103 287-369 (419)
37 KOG0108 mRNA cleavage and poly 99.5 6.8E-14 1.5E-18 122.8 7.6 84 23-106 19-103 (435)
38 COG0724 RNA-binding proteins ( 99.5 2.6E-13 5.6E-18 110.5 10.3 78 22-99 115-193 (306)
39 KOG0145 RNA-binding protein EL 99.5 3.8E-13 8.2E-18 108.8 9.8 85 18-102 37-122 (360)
40 KOG0144 RNA-binding protein CU 99.5 7.5E-14 1.6E-18 119.5 5.6 84 21-105 123-210 (510)
41 KOG4205 RNA-binding protein mu 99.5 9.9E-13 2.2E-17 111.0 12.2 85 21-105 96-180 (311)
42 KOG0131 Splicing factor 3b, su 99.4 1.6E-13 3.6E-18 105.5 6.6 82 18-99 5-87 (203)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.4E-13 2E-17 118.4 12.0 78 19-101 272-351 (481)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9E-13 1.9E-17 118.5 11.1 75 21-101 1-78 (481)
45 KOG0126 Predicted RNA-binding 99.4 2.8E-14 6E-19 109.8 0.7 80 20-99 33-113 (219)
46 cd00590 RRM RRM (RNA recogniti 99.4 3.1E-12 6.7E-17 84.1 10.2 73 24-97 1-74 (74)
47 KOG0144 RNA-binding protein CU 99.4 6.2E-13 1.4E-17 114.0 7.9 85 17-101 29-117 (510)
48 KOG4205 RNA-binding protein mu 99.4 4.6E-13 1E-17 113.0 6.0 83 21-103 5-87 (311)
49 KOG0109 RNA-binding protein LA 99.4 8.6E-13 1.9E-17 108.2 6.8 72 22-101 2-74 (346)
50 KOG0127 Nucleolar protein fibr 99.4 2.8E-12 6.1E-17 112.8 9.4 85 18-102 288-379 (678)
51 KOG4212 RNA-binding protein hn 99.4 6.4E-12 1.4E-16 108.1 10.8 79 21-100 43-123 (608)
52 KOG0124 Polypyrimidine tract-b 99.3 6.8E-13 1.5E-17 111.8 4.3 76 21-96 112-188 (544)
53 smart00361 RRM_1 RNA recogniti 99.3 7.4E-12 1.6E-16 83.6 8.4 61 36-96 2-70 (70)
54 KOG0114 Predicted RNA-binding 99.3 6.4E-12 1.4E-16 88.5 8.2 77 19-98 15-92 (124)
55 KOG0127 Nucleolar protein fibr 99.3 6E-12 1.3E-16 110.8 8.7 82 21-103 116-198 (678)
56 KOG0153 Predicted RNA-binding 99.3 1.4E-11 3.1E-16 103.1 8.7 85 10-100 216-302 (377)
57 PF13893 RRM_5: RNA recognitio 99.3 3.1E-11 6.8E-16 76.8 8.4 55 39-98 1-56 (56)
58 KOG0109 RNA-binding protein LA 99.3 6.3E-12 1.4E-16 103.2 6.1 85 19-111 75-160 (346)
59 KOG0147 Transcriptional coacti 99.3 6.8E-12 1.5E-16 110.4 6.7 83 20-102 276-359 (549)
60 KOG0146 RNA-binding protein ET 99.3 4.7E-12 1E-16 102.9 5.3 87 16-102 279-366 (371)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.6E-11 5.7E-16 109.4 9.7 77 16-98 169-257 (509)
62 KOG0145 RNA-binding protein EL 99.2 8.3E-11 1.8E-15 95.4 10.5 86 15-100 271-357 (360)
63 KOG0415 Predicted peptidyl pro 99.2 1.9E-11 4.1E-16 102.8 7.0 85 16-100 233-318 (479)
64 KOG0131 Splicing factor 3b, su 99.2 3.6E-11 7.8E-16 92.7 6.7 80 20-99 94-175 (203)
65 KOG0146 RNA-binding protein ET 99.2 3.2E-11 6.9E-16 98.1 6.1 86 17-103 14-103 (371)
66 KOG0123 Polyadenylate-binding 99.1 1.7E-10 3.7E-15 100.2 8.8 81 24-107 78-159 (369)
67 KOG4208 Nucleolar RNA-binding 99.1 3.2E-10 6.9E-15 89.1 8.1 84 18-101 45-130 (214)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 5.5E-10 1.2E-14 99.1 9.5 82 20-101 403-485 (940)
69 KOG4209 Splicing factor RNPS1, 99.1 4.7E-10 1E-14 91.5 7.9 86 16-101 95-180 (231)
70 KOG0124 Polypyrimidine tract-b 99.1 3.8E-10 8.3E-15 95.4 7.4 82 20-101 208-290 (544)
71 KOG0132 RNA polymerase II C-te 99.1 4E-10 8.7E-15 102.8 7.9 75 21-101 420-495 (894)
72 KOG4212 RNA-binding protein hn 99.0 9.1E-10 2E-14 95.0 7.4 75 18-97 532-607 (608)
73 KOG0110 RNA-binding protein (R 99.0 5.5E-10 1.2E-14 101.0 5.4 83 18-100 609-692 (725)
74 KOG0123 Polyadenylate-binding 98.9 4.1E-09 8.8E-14 91.7 8.0 71 23-99 2-73 (369)
75 KOG0110 RNA-binding protein (R 98.9 4.3E-09 9.4E-14 95.4 8.2 79 21-99 514-596 (725)
76 KOG4206 Spliceosomal protein s 98.9 8.4E-09 1.8E-13 82.2 8.3 80 20-102 7-91 (221)
77 KOG0533 RRM motif-containing p 98.9 1.3E-08 2.9E-13 83.1 9.1 82 18-100 79-161 (243)
78 KOG1457 RNA binding protein (c 98.8 5.5E-08 1.2E-12 77.6 11.0 91 18-108 30-125 (284)
79 KOG4211 Splicing factor hnRNP- 98.8 2.1E-08 4.6E-13 87.7 9.4 82 18-102 6-87 (510)
80 KOG0106 Alternative splicing f 98.8 7.6E-09 1.6E-13 82.9 5.9 69 23-99 2-71 (216)
81 KOG0226 RNA-binding proteins [ 98.8 4.4E-09 9.5E-14 85.1 4.2 88 15-102 183-271 (290)
82 KOG4211 Splicing factor hnRNP- 98.7 2.1E-07 4.6E-12 81.5 11.9 80 20-100 101-181 (510)
83 KOG4454 RNA binding protein (R 98.7 9.8E-09 2.1E-13 81.6 2.3 77 21-99 8-85 (267)
84 KOG1995 Conserved Zn-finger pr 98.6 1.1E-07 2.4E-12 80.4 8.2 86 17-102 61-155 (351)
85 KOG0151 Predicted splicing reg 98.6 1.6E-07 3.4E-12 85.5 7.2 84 17-100 169-256 (877)
86 KOG4660 Protein Mei2, essentia 98.5 5.5E-08 1.2E-12 86.3 3.9 74 16-94 69-143 (549)
87 KOG4849 mRNA cleavage factor I 98.5 1.1E-06 2.4E-11 74.3 10.5 77 20-96 78-157 (498)
88 KOG1548 Transcription elongati 98.5 5.8E-07 1.3E-11 75.8 8.5 82 18-100 130-220 (382)
89 PF04059 RRM_2: RNA recognitio 98.4 2.7E-06 5.8E-11 60.2 9.1 78 23-100 2-86 (97)
90 KOG0147 Transcriptional coacti 98.4 1E-07 2.2E-12 84.5 1.1 90 15-104 172-261 (549)
91 KOG0120 Splicing factor U2AF, 98.3 1.1E-06 2.5E-11 78.3 5.3 90 14-103 281-371 (500)
92 KOG1190 Polypyrimidine tract-b 98.3 1.1E-05 2.5E-10 69.5 10.8 74 22-100 297-372 (492)
93 KOG4210 Nuclear localization s 98.1 2.8E-06 6E-11 71.6 4.6 79 21-99 183-262 (285)
94 KOG1457 RNA binding protein (c 98.1 4.6E-06 9.9E-11 66.8 4.8 68 17-88 205-273 (284)
95 PF08777 RRM_3: RNA binding mo 98.1 1.3E-05 2.8E-10 57.7 6.4 69 23-97 2-76 (105)
96 PF11608 Limkain-b1: Limkain b 98.0 3.1E-05 6.8E-10 52.8 6.5 67 23-99 3-75 (90)
97 KOG0106 Alternative splicing f 97.9 6.2E-06 1.4E-10 66.3 3.0 72 19-98 96-168 (216)
98 KOG0129 Predicted RNA-binding 97.9 5.1E-05 1.1E-09 67.3 8.0 71 17-87 365-436 (520)
99 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00011 2.4E-09 46.1 5.4 52 23-81 2-53 (53)
100 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00022 4.7E-09 50.8 7.4 77 21-98 5-89 (100)
101 COG5175 MOT2 Transcriptional r 97.6 0.00016 3.4E-09 61.3 6.5 79 21-99 113-201 (480)
102 KOG4307 RNA binding protein RB 97.6 0.00028 6E-09 64.8 8.3 79 18-97 863-943 (944)
103 KOG4206 Spliceosomal protein s 97.6 0.00033 7.2E-09 56.2 7.5 75 19-98 143-219 (221)
104 KOG1855 Predicted RNA-binding 97.5 0.00012 2.5E-09 63.7 4.9 69 17-85 226-307 (484)
105 PF08952 DUF1866: Domain of un 97.5 0.00068 1.5E-08 51.2 8.3 76 17-100 22-106 (146)
106 KOG1190 Polypyrimidine tract-b 97.5 0.00029 6.2E-09 61.1 7.0 77 20-100 412-490 (492)
107 KOG1365 RNA-binding protein Fu 97.5 8.3E-05 1.8E-09 63.9 3.0 74 22-96 161-238 (508)
108 KOG1365 RNA-binding protein Fu 97.4 0.00025 5.4E-09 61.0 5.6 80 20-100 278-361 (508)
109 KOG0129 Predicted RNA-binding 97.4 0.00055 1.2E-08 60.9 7.3 63 19-82 256-324 (520)
110 KOG1456 Heterogeneous nuclear 97.4 0.012 2.7E-07 50.7 14.6 76 21-101 119-199 (494)
111 KOG0105 Alternative splicing f 97.3 0.0033 7.1E-08 49.3 9.4 64 17-87 110-174 (241)
112 KOG0128 RNA-binding protein SA 97.2 0.00027 5.8E-09 66.1 3.4 79 22-101 736-815 (881)
113 KOG2314 Translation initiation 97.0 0.0028 6E-08 57.2 8.0 76 20-96 56-139 (698)
114 KOG1456 Heterogeneous nuclear 97.0 0.0054 1.2E-07 52.8 9.3 81 14-99 279-361 (494)
115 KOG3152 TBP-binding protein, a 97.0 0.0006 1.3E-08 55.7 3.2 72 21-92 73-157 (278)
116 PF10309 DUF2414: Protein of u 97.0 0.0053 1.1E-07 39.7 6.9 55 20-82 3-60 (62)
117 KOG1548 Transcription elongati 96.9 0.005 1.1E-07 52.5 7.8 81 18-102 261-353 (382)
118 KOG0120 Splicing factor U2AF, 96.9 0.004 8.7E-08 56.0 7.5 62 37-98 424-489 (500)
119 KOG2193 IGF-II mRNA-binding pr 96.9 0.00078 1.7E-08 58.7 2.9 77 23-105 2-80 (584)
120 KOG4307 RNA binding protein RB 96.8 0.0014 3E-08 60.4 3.9 79 18-97 430-510 (944)
121 PF15023 DUF4523: Protein of u 96.8 0.0092 2E-07 44.9 7.6 76 16-98 80-159 (166)
122 KOG0128 RNA-binding protein SA 96.7 6.1E-05 1.3E-09 70.2 -4.9 70 21-90 666-735 (881)
123 KOG4676 Splicing factor, argin 96.6 0.0061 1.3E-07 52.8 6.3 78 21-98 6-86 (479)
124 KOG1996 mRNA splicing factor [ 96.2 0.018 4E-07 48.2 6.8 62 36-97 300-363 (378)
125 KOG2202 U2 snRNP splicing fact 96.0 0.0033 7.1E-08 51.5 1.6 61 38-99 84-146 (260)
126 KOG0115 RNA-binding protein p5 95.6 0.013 2.9E-07 48.0 3.5 60 23-83 32-91 (275)
127 PF08675 RNA_bind: RNA binding 95.5 0.068 1.5E-06 36.6 6.2 53 22-83 9-61 (87)
128 KOG0112 Large RNA-binding prot 95.3 0.0064 1.4E-07 57.5 0.8 79 17-96 367-446 (975)
129 KOG4285 Mitotic phosphoprotein 95.1 0.14 3.1E-06 43.1 8.2 68 23-97 198-266 (350)
130 KOG0112 Large RNA-binding prot 95.1 0.03 6.5E-07 53.2 4.6 77 18-100 451-530 (975)
131 KOG2135 Proteins containing th 94.8 0.023 4.9E-07 50.4 2.9 71 24-100 374-445 (526)
132 KOG2591 c-Mpl binding protein, 94.5 0.074 1.6E-06 48.2 5.2 73 20-99 173-250 (684)
133 KOG2416 Acinus (induces apopto 94.4 0.064 1.4E-06 48.9 4.7 79 16-100 438-521 (718)
134 KOG2068 MOT2 transcription fac 94.3 0.018 3.9E-07 48.9 1.0 78 22-99 77-161 (327)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.1 2.2E-06 41.0 4.3 80 20-99 5-96 (176)
136 KOG4210 Nuclear localization s 93.5 0.074 1.6E-06 44.9 3.4 80 20-99 86-166 (285)
137 PF11767 SET_assoc: Histone ly 92.4 0.94 2E-05 29.6 6.6 54 33-95 11-65 (66)
138 KOG2253 U1 snRNP complex, subu 92.3 0.12 2.6E-06 47.7 3.0 70 19-97 37-107 (668)
139 PF03880 DbpA: DbpA RNA bindin 92.2 1.2 2.7E-05 29.5 7.2 66 24-98 2-74 (74)
140 PF04847 Calcipressin: Calcipr 92.1 0.7 1.5E-05 36.5 6.9 59 35-99 8-69 (184)
141 PF07576 BRAP2: BRCA1-associat 91.0 3.6 7.9E-05 29.7 9.1 66 22-89 13-80 (110)
142 PRK11634 ATP-dependent RNA hel 90.6 7.3 0.00016 36.7 13.0 69 22-99 486-561 (629)
143 KOG4660 Protein Mei2, essentia 89.0 0.66 1.4E-05 42.1 4.6 79 22-100 388-472 (549)
144 KOG4574 RNA-binding protein (c 88.3 0.53 1.2E-05 44.9 3.7 77 23-105 299-378 (1007)
145 KOG4676 Splicing factor, argin 87.1 0.058 1.3E-06 46.9 -3.0 65 22-90 151-215 (479)
146 KOG0921 Dosage compensation co 81.8 5.3 0.00012 39.0 7.0 10 165-174 1241-1250(1282)
147 KOG4483 Uncharacterized conser 80.8 6.4 0.00014 34.8 6.6 61 16-83 385-446 (528)
148 smart00596 PRE_C2HC PRE_C2HC d 80.1 3 6.6E-05 27.4 3.5 60 37-98 2-62 (69)
149 KOG2193 IGF-II mRNA-binding pr 76.4 0.3 6.5E-06 43.1 -2.7 75 21-99 79-155 (584)
150 PF03468 XS: XS domain; Inter 74.0 8.5 0.00019 28.0 4.8 47 34-83 29-76 (116)
151 PF07530 PRE_C2HC: Associated 72.4 8.3 0.00018 25.2 4.1 60 37-98 2-62 (68)
152 PF15513 DUF4651: Domain of un 72.1 11 0.00023 24.3 4.3 18 37-54 9-26 (62)
153 KOG4454 RNA binding protein (R 66.8 1.2 2.5E-05 36.2 -1.1 64 18-82 76-143 (267)
154 KOG4410 5-formyltetrahydrofola 65.8 12 0.00026 31.7 4.5 48 22-74 330-377 (396)
155 KOG3973 Uncharacterized conser 64.2 19 0.00041 31.4 5.5 10 184-193 417-426 (465)
156 PF07292 NID: Nmi/IFP 35 domai 64.0 12 0.00025 26.0 3.5 32 67-98 1-34 (88)
157 PF10567 Nab6_mRNP_bdg: RNA-re 63.5 18 0.0004 30.6 5.2 83 18-100 11-107 (309)
158 KOG0804 Cytoplasmic Zn-finger 62.3 41 0.00089 30.3 7.4 66 22-89 74-141 (493)
159 TIGR03636 L23_arch archaeal ri 52.2 65 0.0014 21.6 5.5 55 24-81 15-71 (77)
160 COG0724 RNA-binding proteins ( 51.6 27 0.00058 27.5 4.4 61 16-76 219-279 (306)
161 PRK14548 50S ribosomal protein 50.1 67 0.0015 21.9 5.4 54 25-81 23-78 (84)
162 KOG2318 Uncharacterized conser 49.2 1.3E+02 0.0028 28.1 8.5 82 17-98 169-305 (650)
163 KOG3973 Uncharacterized conser 46.9 71 0.0015 27.9 6.2 12 172-183 416-427 (465)
164 KOG4019 Calcineurin-mediated s 45.5 22 0.00047 28.1 2.7 74 20-99 8-88 (193)
165 KOG4008 rRNA processing protei 44.8 20 0.00043 29.5 2.5 36 17-52 35-70 (261)
166 PF11411 DNA_ligase_IV: DNA li 43.6 19 0.00041 20.5 1.6 16 32-47 19-34 (36)
167 PF02714 DUF221: Domain of unk 42.5 28 0.00061 29.5 3.3 31 67-99 1-32 (325)
168 PF07292 NID: Nmi/IFP 35 domai 40.1 17 0.00037 25.2 1.2 26 18-43 48-73 (88)
169 KOG2295 C2H2 Zn-finger protein 39.9 4.7 0.0001 37.0 -1.9 70 20-89 229-299 (648)
170 PF08734 GYD: GYD domain; Int 36.5 1.4E+02 0.003 20.4 6.0 42 36-81 22-64 (91)
171 KOG2891 Surface glycoprotein [ 35.4 37 0.00081 28.7 2.8 35 22-56 149-195 (445)
172 COG5193 LHP1 La protein, small 32.4 20 0.00043 31.8 0.7 61 21-81 173-243 (438)
173 PF00403 HMA: Heavy-metal-asso 30.7 1.3E+02 0.0028 18.3 6.7 56 24-85 1-60 (62)
174 KOG0156 Cytochrome P450 CYP2 s 30.4 83 0.0018 28.8 4.4 59 26-93 36-97 (489)
175 PF09707 Cas_Cas2CT1978: CRISP 30.3 1.2E+02 0.0027 20.7 4.3 47 22-71 25-71 (86)
176 PF04026 SpoVG: SpoVG; InterP 28.5 1.3E+02 0.0028 20.5 4.1 26 48-73 2-27 (84)
177 PHA01632 hypothetical protein 27.9 63 0.0014 20.3 2.2 18 28-45 22-39 (64)
178 KOG3424 40S ribosomal protein 27.5 2.3E+02 0.005 20.8 5.4 46 33-79 34-84 (132)
179 PF15063 TC1: Thyroid cancer p 26.4 43 0.00092 22.5 1.4 31 19-49 22-52 (79)
180 PF13046 DUF3906: Protein of u 26.4 80 0.0017 20.4 2.6 34 34-69 30-63 (64)
181 PRK01178 rps24e 30S ribosomal 26.3 2.2E+02 0.0047 20.1 5.0 47 32-79 29-80 (99)
182 cd04908 ACT_Bt0572_1 N-termina 24.2 1.9E+02 0.004 18.0 8.6 49 35-87 14-63 (66)
183 PRK13259 regulatory protein Sp 22.3 1.8E+02 0.0038 20.4 3.9 26 48-73 2-27 (94)
184 PRK10590 ATP-dependent RNA hel 21.9 5.7E+02 0.012 22.8 9.0 8 64-71 342-349 (456)
185 PF08206 OB_RNB: Ribonuclease 21.6 17 0.00036 22.8 -1.3 37 63-99 7-44 (58)
186 PF05189 RTC_insert: RNA 3'-te 20.8 1.8E+02 0.004 20.1 3.9 49 24-72 12-65 (103)
187 KOG4365 Uncharacterized conser 20.8 16 0.00035 32.8 -1.9 77 23-100 4-81 (572)
188 PF14111 DUF4283: Domain of un 20.0 53 0.0011 24.2 1.0 69 23-96 16-87 (153)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=1.5e-21 Score=148.48 Aligned_cols=83 Identities=37% Similarity=0.677 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
....++|||+||++++||++|+++|++||+|++|.|+.|+.|++++|||||+|+++++|++||+ +++.+|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4557799999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+..+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8543
No 2
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=1.3e-20 Score=149.64 Aligned_cols=85 Identities=78% Similarity=1.313 Sum_probs=81.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
+..|.+.++||||+|+|+++.|+|+++|++||+|++..|+.|+.|+++|||+||+|.|.++|++||+..+..|+||+..|
T Consensus 6 ~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 6 PFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred CCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
++|..
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 99976
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=1.8e-18 Score=148.92 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC--eEeEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRANC 95 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g--~~i~v 95 (208)
+...++|||+|||+++||++|+++|++||+|++|+|+.++.|++++|||||+|++.++|++||+ +++..+++ +.|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999997 69888866 68899
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.++...
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 888654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.2e-17 Score=143.78 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
....+|||+|||+++++++|+++|++||.|++++|+.|+.|++++|||||+|.+.++|.+||+ +|+..|+|+.|+|+++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 445579999999999999999999999999999999999999999999999999999999996 7999999999999999
Q ss_pred ccCC
Q 028475 99 CLGV 102 (208)
Q Consensus 99 ~~~~ 102 (208)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 6554
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.3e-17 Score=141.98 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
..+...++|||++||+++||++|+++|++||+|++|+|+.|+.|++++|||||+|.++++|++||+ +++.+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678999999999999999999999999999999999999999999999999999999999996 7999999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
+++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98754
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=2e-16 Score=143.29 Aligned_cols=75 Identities=28% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcC--CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
..++|||+||++++||++|+++|++| |+|++|.++ ++||||+|++.++|++||+ +|+.+|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46789999999999999999999999 999999875 3599999999999999996 799999999999999
Q ss_pred cccCCC
Q 028475 98 ACLGVQ 103 (208)
Q Consensus 98 a~~~~~ 103 (208)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 977544
No 7
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=6.6e-17 Score=132.46 Aligned_cols=103 Identities=26% Similarity=0.422 Sum_probs=88.7
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
....+..++.++|||+.|+.+++|.+|++.|++||+|+.|+|+.|+.||+++|||||+|+++.+..+|-+ .++..|+|+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 3455666899999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred EeEEEEcccCC-CCCCCCCCCCCCC
Q 028475 92 RANCNLACLGV-QRSKPSTPKHGGG 115 (208)
Q Consensus 92 ~i~v~~a~~~~-~~~~~~~~~~~~g 115 (208)
.|.|.+...+. +.+.|+.-.++-|
T Consensus 172 ri~VDvERgRTvkgW~PRRLGGGLG 196 (335)
T KOG0113|consen 172 RILVDVERGRTVKGWLPRRLGGGLG 196 (335)
T ss_pred EEEEEecccccccccccccccCCcC
Confidence 99999987644 3345544444433
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.8e-16 Score=128.49 Aligned_cols=81 Identities=33% Similarity=0.499 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
....+.++|||||++..+||++|++.|+.||.|.+|++..+ +||+||.|++.|+|.+||. +|+.+|.|+.++|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 45678899999999999999999999999999999999988 7899999999999999995 7999999999999
Q ss_pred EEcccCCC
Q 028475 96 NLACLGVQ 103 (208)
Q Consensus 96 ~~a~~~~~ 103 (208)
.|-+....
T Consensus 233 sWGKe~~~ 240 (321)
T KOG0148|consen 233 SWGKEGDD 240 (321)
T ss_pred eccccCCC
Confidence 99865433
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=6.4e-17 Score=139.34 Aligned_cols=81 Identities=30% Similarity=0.429 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
+.++|||+|||.+++|++|+++|++||+|.+|+|++|+.+++++|||||+|.++++|++||+ +++..|.|+.|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999996 79999999999999886
Q ss_pred cC
Q 028475 100 LG 101 (208)
Q Consensus 100 ~~ 101 (208)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.9e-16 Score=104.77 Aligned_cols=69 Identities=36% Similarity=0.645 Sum_probs=65.5
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
|||+|||+++|+++|+++|++||.|..+.+..+ .++..+++|||+|++.++|++|++ +++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 578899999999999999999997 799999999875
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=8.2e-17 Score=133.39 Aligned_cols=91 Identities=27% Similarity=0.488 Sum_probs=81.0
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
....++.++|+|+|||+...|-||+.+|++||+|.+|.|+.+- ..+|||+||+|++.++|++|-+ +|+..|.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3455678999999999999999999999999999999999883 5689999999999999999995 699999999999
Q ss_pred EEEcccCCCCCCCC
Q 028475 95 CNLACLGVQRSKPS 108 (208)
Q Consensus 95 v~~a~~~~~~~~~~ 108 (208)
|+.+..++...+..
T Consensus 168 Vn~ATarV~n~K~~ 181 (376)
T KOG0125|consen 168 VNNATARVHNKKKK 181 (376)
T ss_pred EeccchhhccCCcc
Confidence 99998877655443
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=9.2e-17 Score=116.84 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..+++|||+||++.++||+|.++|+++|+|+.|.+-.|+.+..+.|||||+|-+.++|+.|+. +++..++.+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 468999999999999999999999999999999999999999999999999999999999998 6999999999999887
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=4.8e-16 Score=118.75 Aligned_cols=79 Identities=28% Similarity=0.433 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+||+..+++.||+..|.+||+|..|.|..++ .|||||||++..+|++|+. |++..|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457899999999999999999999999999999998764 8999999999999999996 7999999999999999
Q ss_pred ccCCC
Q 028475 99 CLGVQ 103 (208)
Q Consensus 99 ~~~~~ 103 (208)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 65544
No 14
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.3e-16 Score=124.61 Aligned_cols=84 Identities=26% Similarity=0.336 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
...+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+ +|+.-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99654
No 15
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.66 E-value=4.6e-16 Score=121.75 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=80.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+.+-+.+.+|-|-||...++.++|+.+|++||.|-+|.|.+|+.|..++|||||.|.+..+|++|++ |++.+|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4455678899999999999999999999999999999999999999999999999999999999996 799999999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|.+|+-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99986533
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=8.6e-16 Score=125.63 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
..++|||+||++.+||++|+++|+.||+|++|.|+.++. .+|||||+|+++++|+.||.+++..|.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 357999999999999999999999999999999998864 4789999999999999999999999999999999884
No 17
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.1e-15 Score=117.90 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||.++.|.+|+++|.+||.|.+|.|...+ ....||||+|++..+|+.||. .++..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999985442 356799999999999999997 5999999999999998
Q ss_pred c
Q 028475 99 C 99 (208)
Q Consensus 99 ~ 99 (208)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 4
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.1e-15 Score=129.43 Aligned_cols=82 Identities=29% Similarity=0.394 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
-.+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.+.++|.+|++ +|+++|+|..|+|.+
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 356889999999999999999999999999999998876 99999999999999996 799999999999999
Q ss_pred cccCCCCCCCC
Q 028475 98 ACLGVQRSKPS 108 (208)
Q Consensus 98 a~~~~~~~~~~ 108 (208)
|++..++...+
T Consensus 328 AKP~~k~k~~r 338 (506)
T KOG0117|consen 328 AKPVDKKKKER 338 (506)
T ss_pred cCChhhhccch
Confidence 99866555443
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.6e-15 Score=99.96 Aligned_cols=69 Identities=32% Similarity=0.600 Sum_probs=63.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeE
Q 028475 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRAN 94 (208)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~ 94 (208)
|||+|||+++++++|+++|+.+|.|..+.+..++. +..+++|||+|.++++|++|++. ++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 89999999999999999999986 67899999875
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=4.5e-15 Score=134.97 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+||++++++++|+++|+.||+|++++|.+++.+++++|||||+|++.++|.+||+ +|+.+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999996 7999999999999988
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 653
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=3.3e-14 Score=129.95 Aligned_cols=83 Identities=29% Similarity=0.452 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
....++|||+||++++|+++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|++||+ +|+..++|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 446778999999999999999999999999999999999 579999999999999999999996 799999999999999
Q ss_pred cccCC
Q 028475 98 ACLGV 102 (208)
Q Consensus 98 a~~~~ 102 (208)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 97544
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=3.7e-15 Score=135.50 Aligned_cols=79 Identities=30% Similarity=0.553 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+||+++++|++|+++|++||+|.+|+|+.|+.|++++|||||+|++.++|++||+ +|+..|+|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 467899999999999999999999999999999999999999999999999999999999996 7999999999999754
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=116.78 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
...+|||+||++.+||++|+++|+.||+|.+|+|++|. +.++||||+|+++++++.||.+++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999984 45689999999999999999999999999999998653
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=1.4e-14 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
+...++|||+|||..+++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..+.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.6e-14 Score=132.04 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=73.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
.+|||+|||+++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++||+ ++...|.|+.|+|.|+.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 379999999999999999999999999999999999999999999999999999999996 68888999999999874
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.5e-15 Score=116.81 Aligned_cols=85 Identities=29% Similarity=0.415 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
....-++||||+|..+++|.-|...|-.||.|++|.++.|-.++++|||+||+|+..|+|.+||. ||..+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
+|++..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 998743
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2.4e-14 Score=124.53 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCH--HHHHHHHH-hCCCeeCCeEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~--~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
......+||||||++.+++++|+.+|+.||.|.+|.|+ +.|| ||||||+|.+. .++.+||+ +|+.++.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 34456899999999999999999999999999999999 4466 99999999977 78999996 799999999999
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
|+.|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 998864
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=7.4e-14 Score=125.98 Aligned_cols=82 Identities=24% Similarity=0.500 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||..+|+++|+++|+.||.|+.+.|+.++.+++++|||||+|.+.++|+.||+ +++..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999999999999999999999999999996 7999999999999998
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 543
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2e-14 Score=116.63 Aligned_cols=83 Identities=37% Similarity=0.511 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
.....+||+.|..+++-|+||+.|.+||+|.+++|++|..|+|+|||+||.|.+.++|++||. ||+.-|.+|.|+-+||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 346789999999999999999999999999999999999999999999999999999999995 8999999999999999
Q ss_pred ccCC
Q 028475 99 CLGV 102 (208)
Q Consensus 99 ~~~~ 102 (208)
..+.
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 6554
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=3e-14 Score=129.23 Aligned_cols=75 Identities=31% Similarity=0.444 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-CeEeEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANC 95 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~~i~v 95 (208)
...++|||+|||++++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+ +|+.+|. ++.|.|
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 34689999999999999999999999999999999999 789999999999999999999997 5887774 565544
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=8.1e-14 Score=124.19 Aligned_cols=79 Identities=32% Similarity=0.588 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+||+ +++..|.|+.|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999999999999999999999999996 79999999999999985
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1.4e-13 Score=90.16 Aligned_cols=71 Identities=32% Similarity=0.549 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+|+|+|||..+++++|+++|++||+|..+.+..++ +.++++|||+|.+.++|++|++ +++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 6788999999999999999997 58899999988773
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5.7e-14 Score=103.25 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+..+...-.|||.++.+++||++|.+.|..||+|+.+.+..|+.||-.+|||.|+|++.++|++||+ +|+.+|.++.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4556677889999999999999999999999999999999999999999999999999999999996 699999999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|.|+-.+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99996543
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.1e-13 Score=118.90 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee-CCeEeEEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI-DGRRANCNL 97 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i-~g~~i~v~~ 97 (208)
...+.||||.||.++.|++|..+|++.|+|-+++||.|+.+|.+||||||+|.+.++|++||+ +|+++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 568899999999999999999999999999999999999999999999999999999999996 588887 488887764
Q ss_pred c
Q 028475 98 A 98 (208)
Q Consensus 98 a 98 (208)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 3
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.2e-13 Score=88.87 Aligned_cols=70 Identities=36% Similarity=0.579 Sum_probs=64.9
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 27 VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
|+|||..+++++|+++|++||.|..+.+..++.+++++++|||+|.+.++|.+|++ +++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988889999999999999999999997 58888999988873
No 36
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.49 E-value=5.4e-13 Score=116.54 Aligned_cols=83 Identities=27% Similarity=0.405 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
...+|||+|||+++++++|+++|..||.|+...|......++..+|+||+|.+.++++.||+.+...|++++|.|+..+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999999887754335555999999999999999999888889999999998865
Q ss_pred CCC
Q 028475 101 GVQ 103 (208)
Q Consensus 101 ~~~ 103 (208)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 433
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=6.8e-14 Score=122.78 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=78.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcccC
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~~ 101 (208)
+.|||||||++++|++|.++|++.|.|.+++++.|+.||+.+||+|++|.+++++++|++ +|+.++.|++|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999997 6999999999999999665
Q ss_pred CCCCC
Q 028475 102 VQRSK 106 (208)
Q Consensus 102 ~~~~~ 106 (208)
..+.+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 54433
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=110.53 Aligned_cols=78 Identities=29% Similarity=0.575 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
.++|||+|||..+|+++|+++|.+||.|..+.+..++.+++++|||||+|.++++|..|++ +++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999899999999999999999999997 58899999999999964
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.8e-13 Score=108.85 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.++.-+.|.|--||..+|+|||+.+|...|+|++|++++|+.+|.+-||+||.|.++++|++||. +|+..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35666789999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
+|++..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998754
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.5e-14 Score=119.54 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe-eC--CeEeEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-ID--GRRANCN 96 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~-i~--g~~i~v~ 96 (208)
..++|||+.|+..+||+|++++|++||.|++|.|++|.+ +.+||||||.|.+.|.|..||+ +|+.. +. ...|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999999999999999975 9999999999999999999996 67653 44 5689999
Q ss_pred EcccCCCCC
Q 028475 97 LACLGVQRS 105 (208)
Q Consensus 97 ~a~~~~~~~ 105 (208)
||..+..+.
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 997765443
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.45 E-value=9.9e-13 Score=111.02 Aligned_cols=85 Identities=33% Similarity=0.599 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
..++|||++||.+++++++++.|++||.|.++.++.|+.+.+++||+||.|++++++++++...-++|+++.++|..|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 028475 101 GVQRS 105 (208)
Q Consensus 101 ~~~~~ 105 (208)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 66544
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.45 E-value=1.6e-13 Score=105.53 Aligned_cols=82 Identities=27% Similarity=0.376 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+.....+|||+||+..++++.|.++|-+.|+|..+++++|+.+..++|||||+|.++|+|+=||+ +|...+.|+.|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999997 58888999999999
Q ss_pred Ecc
Q 028475 97 LAC 99 (208)
Q Consensus 97 ~a~ 99 (208)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 885
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=9.4e-13 Score=118.43 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 19 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
....++|||+||++ .+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++||+ +|+..|.|+.|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999873 6899999999999999996 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 88543
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=9e-13 Score=118.55 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH---hCCCeeCCeEeEEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV---DAAPVIDGRRANCNL 97 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~---~~~~~i~g~~i~v~~ 97 (208)
+++.|||+|||++++|++|+++|++||.|++|.|+.+ +++|||+|++.++|++||+ +++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3679999999999999999999999999999999864 5799999999999999996 377889999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8543
No 45
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.8e-14 Score=109.78 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..+.-|||||||.+.||.||..+|++||+|..|.+++|+.||+++||||+.|++..+..-||. +|+..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456789999999999999999999999999999999999999999999999999999877775 6999999999999866
Q ss_pred c
Q 028475 99 C 99 (208)
Q Consensus 99 ~ 99 (208)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=3.1e-12 Score=84.13 Aligned_cols=73 Identities=32% Similarity=0.566 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
+|+|++||..+++++|+++|+.+|.|..+.+..++.+ ..+++|||+|.+.++|..|++ +++..+.++.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988754 778999999999999999997 588889999998863
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=6.2e-13 Score=113.97 Aligned_cols=85 Identities=27% Similarity=0.410 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h-CCCeeCC--eE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDG--RR 92 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~g--~~ 92 (208)
..|...-+|||+-||..++|+||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+. + |-+.|.| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 445677899999999999999999999999999999999999999999999999999999999995 5 4455665 45
Q ss_pred eEEEEcccC
Q 028475 93 ANCNLACLG 101 (208)
Q Consensus 93 i~v~~a~~~ 101 (208)
|.|++|..+
T Consensus 109 vqvk~Ad~E 117 (510)
T KOG0144|consen 109 VQVKYADGE 117 (510)
T ss_pred eeecccchh
Confidence 777766543
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.39 E-value=4.6e-13 Score=113.02 Aligned_cols=83 Identities=41% Similarity=0.750 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
+.++|||++|+|++++|.|++.|++||+|.+|.+++|+.+++++||+||+|++.+.+.++|....+.|+|+.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78899999999999999999999999999999999999999999999999999999999998888899999999998876
Q ss_pred CCC
Q 028475 101 GVQ 103 (208)
Q Consensus 101 ~~~ 103 (208)
+..
T Consensus 85 r~~ 87 (311)
T KOG4205|consen 85 RED 87 (311)
T ss_pred ccc
Confidence 554
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=8.6e-13 Score=108.18 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
..+|||||||.++++.+|+.+|++||+|.+|+|+++ |+||+.++...++.||. +++-.|+|..|.|+.++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 358999999999999999999999999999999977 99999999999999997 799999999999998876
Q ss_pred C
Q 028475 101 G 101 (208)
Q Consensus 101 ~ 101 (208)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 5
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.8e-12 Score=112.76 Aligned_cols=85 Identities=35% Similarity=0.527 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhC------C-CeeCC
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA------A-PVIDG 90 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~------~-~~i~g 90 (208)
.....++|||+|||+++||++|.++|++||+|..+.|+.++.|+.++|.|||.|.+..++.+||+.- + ..|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3445689999999999999999999999999999999999999999999999999999999999642 2 45899
Q ss_pred eEeEEEEcccCC
Q 028475 91 RRANCNLACLGV 102 (208)
Q Consensus 91 ~~i~v~~a~~~~ 102 (208)
|.|.|..+..+.
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999999886654
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=6.4e-12 Score=108.05 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHH-hcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..+++||.|||+++.+.+|+++| ++-|+|+.|.++.|. ++|+||||.|||+++|.+++|+| +|.+++.|+.|+|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45679999999999999999999 579999999999996 69999999999999999999998 6999999999999876
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 44
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.8e-13 Score=111.82 Aligned_cols=76 Identities=32% Similarity=0.580 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
-+|+||||.|.++..|+.|+..|..||+|++|.+.+|+.|+++||||||+|+-.|.|+-|+| ||+..+.||.|+|.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 47999999999999999999999999999999999999999999999999999999999998 79999999999986
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=7.4e-12 Score=83.60 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=54.3
Q ss_pred HHHHHHHHh----cCCCEeEEE-EeecCCC--CCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 36 KETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 36 e~~L~~~F~----~~G~i~~v~-i~~~~~t--g~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+++|+++|+ +||.|.++. |..++.+ +.++||+||+|.+.++|++|++ +|+..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999995 7777666 8899999999999999999996 69999999998863
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6.4e-12 Score=88.50 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
....+-|||.|||+.+|.|++.++|.+||.|..|+|-..+. .+|-|||.|++..+|.+|++ +++..++++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567899999999999999999999999999999976543 58999999999999999996 799999999999875
Q ss_pred c
Q 028475 98 A 98 (208)
Q Consensus 98 a 98 (208)
-
T Consensus 92 y 92 (124)
T KOG0114|consen 92 Y 92 (124)
T ss_pred c
Confidence 4
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=6e-12 Score=110.75 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
+--+|.|+|||+.+.+.+|+.+|+.||.|.+|.|++.+. ++.+|||||.|.+..+|..||+ +|+++|+||.|-|.||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 356899999999999999999999999999999998776 6667999999999999999997 69999999999999997
Q ss_pred cCCC
Q 028475 100 LGVQ 103 (208)
Q Consensus 100 ~~~~ 103 (208)
.+..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 6543
No 56
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=103.12 Aligned_cols=85 Identities=32% Similarity=0.425 Sum_probs=76.0
Q ss_pred hhccCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh--CCCe
Q 028475 10 AAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD--AAPV 87 (208)
Q Consensus 10 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~--~~~~ 87 (208)
.++...+.+|...++|||++|...++|.+|+++|.+||+|+++.+... +++|||+|.+.++|+.|.+. +...
T Consensus 216 ~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 216 SAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred cccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceee
Confidence 334467889999999999999999999999999999999999999776 56999999999999999963 7778
Q ss_pred eCCeEeEEEEccc
Q 028475 88 IDGRRANCNLACL 100 (208)
Q Consensus 88 i~g~~i~v~~a~~ 100 (208)
|+|.+|.|.|..+
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 9999999999965
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=3.1e-11 Score=76.85 Aligned_cols=55 Identities=31% Similarity=0.512 Sum_probs=49.2
Q ss_pred HHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 39 L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
|+++|++||+|+++.+..+. +++|||+|.+.++|++|++ +|+..+.|+.|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997663 5899999999999999997 7999999999999885
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=6.3e-12 Score=103.17 Aligned_cols=85 Identities=22% Similarity=0.417 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
+...++|+|+||.+.++..||++.|++||+|.+|+|++| |+||+|+..++|..||+ +++.++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 567889999999999999999999999999999999866 99999999999999995 799999999999999
Q ss_pred cccCCCCCCCCCCC
Q 028475 98 ACLGVQRSKPSTPK 111 (208)
Q Consensus 98 a~~~~~~~~~~~~~ 111 (208)
+..+.+.+......
T Consensus 147 stsrlrtapgmgDq 160 (346)
T KOG0109|consen 147 STSRLRTAPGMGDQ 160 (346)
T ss_pred eccccccCCCCCCH
Confidence 98777666554443
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.27 E-value=6.8e-12 Score=110.42 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
.+..+|||+||.++++|++|+..|+.||.|+.|.++.|..||.++||+||+|.+.++|.+|++ +|+.+|-|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 445559999999999999999999999999999999999999999999999999999999987 6999999999999876
Q ss_pred ccCC
Q 028475 99 CLGV 102 (208)
Q Consensus 99 ~~~~ 102 (208)
..+.
T Consensus 356 ~~r~ 359 (549)
T KOG0147|consen 356 TERV 359 (549)
T ss_pred eeec
Confidence 5443
No 60
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=4.7e-12 Score=102.90 Aligned_cols=87 Identities=29% Similarity=0.339 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+.+..+.|+|||=.||.+..+.||..+|-.||.|.+.++..|+.|..+|+|+||.|++..++++||. ||+..|.-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 3466889999999999999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|.+++++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 98876543
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=2.6e-11 Score=109.44 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcC------------CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF------------GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
+..+...++|||+|||+.+|+++|+++|.++ +.|..+.+ .+.+|||||+|.+.++|..||++
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3456678899999999999999999999875 23444444 34588999999999999999999
Q ss_pred CCCeeCCeEeEEEEc
Q 028475 84 AAPVIDGRRANCNLA 98 (208)
Q Consensus 84 ~~~~i~g~~i~v~~a 98 (208)
++..|.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 999999999988643
No 62
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=8.3e-11 Score=95.41 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=78.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+......-.|||=||.++++|.-|.++|..||.|..|+|++|..|.+.|||+||.+.+-++|..||. +|+..+.++.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 34455567899999999999999999999999999999999999999999999999999999999996 79999999999
Q ss_pred EEEEccc
Q 028475 94 NCNLACL 100 (208)
Q Consensus 94 ~v~~a~~ 100 (208)
.|++...
T Consensus 351 QVsFKtn 357 (360)
T KOG0145|consen 351 QVSFKTN 357 (360)
T ss_pred EEEEecC
Confidence 9998854
No 63
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.9e-11 Score=102.78 Aligned_cols=85 Identities=29% Similarity=0.400 Sum_probs=78.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i~ 94 (208)
+...++..-|||..|.+-+|+++|+-+|+.||.|..|.|++|+.||.+-.||||+|++.+++++|. +|++..|+.+.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 344567789999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
|.++..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 998743
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.20 E-value=3.6e-11 Score=92.70 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
.-..+|||+||.++++|..|.+.|+.||.+.+ .+++++..|+.++||+||.|++.+.+.+||+ +++..++.++|.|+.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 44589999999999999999999999998765 5899999999999999999999999999997 699999999999999
Q ss_pred cc
Q 028475 98 AC 99 (208)
Q Consensus 98 a~ 99 (208)
+.
T Consensus 174 a~ 175 (203)
T KOG0131|consen 174 AF 175 (203)
T ss_pred EE
Confidence 84
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.2e-11 Score=98.14 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe-eCC--eE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-IDG--RR 92 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~-i~g--~~ 92 (208)
.+..++++||||.|...-.|||++.+|..||.|++|.+++.++ +.+|||+||.|.+..+|+.||. +++.. +-| ..
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3344789999999999999999999999999999999999875 8899999999999999999996 67654 443 46
Q ss_pred eEEEEcccCCC
Q 028475 93 ANCNLACLGVQ 103 (208)
Q Consensus 93 i~v~~a~~~~~ 103 (208)
|.|+++...++
T Consensus 93 LVVK~ADTdkE 103 (371)
T KOG0146|consen 93 LVVKFADTDKE 103 (371)
T ss_pred eEEEeccchHH
Confidence 88998866444
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.7e-10 Score=100.20 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcccCC
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLGV 102 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~~~ 102 (208)
.|||.||+++++.++|.++|+.||+|.+|++..+.. | ++|| ||+|+++++|.+||+ +|+..+.+++|.|.....+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999974 4 8999 999999999999997 59999999999998876655
Q ss_pred CCCCC
Q 028475 103 QRSKP 107 (208)
Q Consensus 103 ~~~~~ 107 (208)
.+..+
T Consensus 155 er~~~ 159 (369)
T KOG0123|consen 155 EREAP 159 (369)
T ss_pred hhccc
Confidence 54433
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=89.10 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......-++|..+|..+.+.+|..+|.++ |.|..+++-+++.||.++|||||+|++++.|+-|-+ ||+.-+.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44456678999999999999999999888 788899999999999999999999999999999887 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 877544
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=5.5e-10 Score=99.08 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||.+|+..+...+|+.+|++||+|.-.+|+++..+.-.++|+||++.+.++|.+||+ ++..+|+|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346789999999999999999999999999999999998888889999999999999999997 7999999999999988
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 653
No 69
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.07 E-value=4.7e-10 Score=91.48 Aligned_cols=86 Identities=24% Similarity=0.323 Sum_probs=80.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
...+.+.+++||+|+...+|.++++.+|+.||.|..+.|..|+.++.++||+||+|.+.+.++.++.+++..|.++.++|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.+.+.+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 988654
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.8e-10 Score=95.39 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
....+|||..+.++.+|+||+.+|+.||+|..|.+-+++.++.+|||+|++|.+..+...||. ||-.++.|+.|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 457899999999999999999999999999999999999999999999999999999999996 7999999999999877
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
...
T Consensus 288 vTP 290 (544)
T KOG0124|consen 288 VTP 290 (544)
T ss_pred cCC
Confidence 443
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=4e-10 Score=102.75 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
-+++||||.|+..++|.||..+|+.||+|.+|.++.. ++||||.+.+.++|++|+. +++..+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4789999999999999999999999999999988766 7899999999999999995 78888999999999996
Q ss_pred cC
Q 028475 100 LG 101 (208)
Q Consensus 100 ~~ 101 (208)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 54
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=9.1e-10 Score=94.99 Aligned_cols=75 Identities=25% Similarity=0.506 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
...+.|+|||.|||+++|+..|++.|..||.|..++|+.+ ++++| .|.|.++++|++||. +++..++|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 3456788999999999999999999999999999999654 77787 799999999999997 59999999999997
Q ss_pred E
Q 028475 97 L 97 (208)
Q Consensus 97 ~ 97 (208)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 5
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=5.5e-10 Score=101.04 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.+.++++|+|.|||+..+-.+++++|..||.|.+|+|+.....+.++|||||+|-+.++|.+|+. +..+.+-||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 44458899999999999999999999999999999999886667889999999999999999996 57677999999999
Q ss_pred Eccc
Q 028475 97 LACL 100 (208)
Q Consensus 97 ~a~~ 100 (208)
|+..
T Consensus 689 wA~~ 692 (725)
T KOG0110|consen 689 WAKS 692 (725)
T ss_pred hhcc
Confidence 9964
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=4.1e-09 Score=91.68 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=66.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
.+|||| +++||+.|.++|+..|+|.++++.+|. | +-|||||.|.+.++|++||+ +|...+.|+.|++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 579999 899999999999999999999999998 6 99999999999999999996 68889999999999884
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=4.3e-09 Score=95.35 Aligned_cols=79 Identities=33% Similarity=0.528 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCC---CcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg---~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
..++|||.||++++|.++|+.+|.+.|.|.++.|...++.. .+.||+||+|.+.++|++|++ ++++.|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999987765422 234999999999999999997 69999999999999
Q ss_pred Ecc
Q 028475 97 LAC 99 (208)
Q Consensus 97 ~a~ 99 (208)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 986
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.88 E-value=8.4e-09 Score=82.21 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHH----HHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 20 TTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
.+..+|||.||+..+..++|++ +|++||+|.+|.... |.+.+|-|||.|.+.+.|..|+. +++..+-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999998 999999999987754 47789999999999999999996 799999999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|.+|+.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99986543
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.87 E-value=1.3e-08 Score=83.09 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.+....+|.|.||+..++++||+++|+.||.++.+.+..++ +|.+.|.|-|.|+..++|++|++ .++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45566899999999999999999999999999999999997 59999999999999999999997 58888999999988
Q ss_pred Eccc
Q 028475 97 LACL 100 (208)
Q Consensus 97 ~a~~ 100 (208)
....
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 7754
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=5.5e-08 Score=77.56 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC---CeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRR 92 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~---g~~ 92 (208)
+....++|||.+||.++...||..+|..|---+.+.|... +.....+-+|||+|.+..+|++|+. +|+..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3456899999999999999999999998866666655332 2222345799999999999999995 6998876 778
Q ss_pred eEEEEcccCCCCCCCC
Q 028475 93 ANCNLACLGVQRSKPS 108 (208)
Q Consensus 93 i~v~~a~~~~~~~~~~ 108 (208)
|++++++...++++++
T Consensus 110 LhiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRK 125 (284)
T ss_pred eEeeehhcCcccccCC
Confidence 9999997766655544
No 79
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.82 E-value=2.1e-08 Score=87.69 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
+-.+..-|-+.+|||++|++||+++|+.++ |+.+.+ .+.+|+..|-|||+|.+++++++|++++...+..+-|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445666788889999999999999999985 666444 44579999999999999999999999999999999999988
Q ss_pred cccCC
Q 028475 98 ACLGV 102 (208)
Q Consensus 98 a~~~~ 102 (208)
+....
T Consensus 83 ~~~~e 87 (510)
T KOG4211|consen 83 AGGAE 87 (510)
T ss_pred cCCcc
Confidence 75433
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=7.6e-09 Score=82.92 Aligned_cols=69 Identities=28% Similarity=0.563 Sum_probs=63.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEeEEEEcc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i~v~~a~ 99 (208)
.++||++||+.+.+++|+++|..||.|.++.+. .||+||+|++..+|+.|| .+++.+|++..+.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 579999999999999999999999999998774 569999999999999999 479999999998888884
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.80 E-value=4.4e-09 Score=85.13 Aligned_cols=88 Identities=30% Similarity=0.444 Sum_probs=78.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i 93 (208)
....+..+.+||.|.|..+++++.|-+.|.+|-.-...++++|+.|++++||+||.|.+.+++.+|+ +|++..++.+.|
T Consensus 183 l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 183 LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 3445667889999999999999999999999998888899999999999999999999999999999 579999999998
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
++..+..+.
T Consensus 263 klRkS~wke 271 (290)
T KOG0226|consen 263 KLRKSEWKE 271 (290)
T ss_pred HhhhhhHHh
Confidence 887665443
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.71 E-value=2.1e-07 Score=81.55 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
.....|-+++||+.||++||.++|+..-.|.. |.++.++ .+++.|.|||.|++.+.|++||..+...|..+-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 56678899999999999999999987765555 5566665 477999999999999999999999988999999999877
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 53
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=9.8e-09 Score=81.55 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v~~a~ 99 (208)
..++|||+|+...++|+-|.++|-+-|+|.+|.|..+++ ++.| ||||+|+++-++.-|+++ |+..+.++.+.+.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 456999999999999999999999999999999988875 5556 999999999999999985 9988988887776543
No 84
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=80.40 Aligned_cols=86 Identities=27% Similarity=0.282 Sum_probs=76.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEe--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPV 87 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~ 87 (208)
.......+|||-+|+..+++++|.++|.++|.|. .|.|-+++.|++.|+-|.|.|++...|+.||+. ++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4466778999999999999999999999999885 366778899999999999999999999999985 9999
Q ss_pred eCCeEeEEEEcccCC
Q 028475 88 IDGRRANCNLACLGV 102 (208)
Q Consensus 88 i~g~~i~v~~a~~~~ 102 (208)
+++..|+|.++..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999886544
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.56 E-value=1.6e-07 Score=85.48 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCC---CCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~ 92 (208)
.+|+..+.|||+||++.++|+.|...|..||+|..++|+..+. ..+.+-|+||.|-+..+|++|++ +++..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 4578899999999999999999999999999999999988752 24456799999999999999996 7999999999
Q ss_pred eEEEEccc
Q 028475 93 ANCNLACL 100 (208)
Q Consensus 93 i~v~~a~~ 100 (208)
+++-|.+.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99998843
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=5.5e-08 Score=86.28 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+....+|+|-|||..+++++|+++|+.||+|+.|+.... .++.+||+|-|..+|++|++ ++..+|.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344677889999999999999999999999999999765443 58999999999999999995 699999998777
No 87
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.51 E-value=1.1e-06 Score=74.33 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCN 96 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v~ 96 (208)
-.--.+|||||-|.+|++||.+.+..-| .+.++++..++.+|.+||||.|...++.++++.+++ ..++|+|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3445789999999999999999887665 577888999999999999999999999999999985 7788999865553
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.50 E-value=5.8e-07 Score=75.79 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
+....++|||+|||.++|.+++.++|++||.|.+ |+|-++.. |+.+|=|.|.|..+++++=||. ++...+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3456778999999999999999999999998753 66777754 8999999999999999999997 599999
Q ss_pred CCeEeEEEEccc
Q 028475 89 DGRRANCNLACL 100 (208)
Q Consensus 89 ~g~~i~v~~a~~ 100 (208)
.|+.|+|+.|.-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999998753
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.43 E-value=2.7e-06 Score=60.20 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhc--CCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC----CeEeEE
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID----GRRANC 95 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~----g~~i~v 95 (208)
++|.|.|||...|.++|.+++.. .|....+-++.|..+.-+.|||||.|.+.+.|.+-.+ .++..+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999954 3677788899998889999999999999999998886 4777654 566788
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88754
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.38 E-value=1e-07 Score=84.50 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....+...+++|+--|+...++.+|.++|+.+|+|.+|.|+.|+.+++++|.++|+|.|.+.+..||.+.|..+.|.+|.
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeE
Confidence 44566678889999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCCC
Q 028475 95 CNLACLGVQR 104 (208)
Q Consensus 95 v~~a~~~~~~ 104 (208)
|.......++
T Consensus 252 vq~sEaeknr 261 (549)
T KOG0147|consen 252 VQLSEAEKNR 261 (549)
T ss_pred ecccHHHHHH
Confidence 9876544433
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.1e-06 Score=78.28 Aligned_cols=90 Identities=23% Similarity=0.412 Sum_probs=81.2
Q ss_pred CCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE
Q 028475 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (208)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~ 92 (208)
..+..-....+|||++||...++.+++++...||.+....++.|..++-++||||.+|.+......||+ +|+..+.++.
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 344555678899999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred eEEEEcccCCC
Q 028475 93 ANCNLACLGVQ 103 (208)
Q Consensus 93 i~v~~a~~~~~ 103 (208)
|.|..|.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99998865443
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.26 E-value=1.1e-05 Score=69.53 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=66.6
Q ss_pred CCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 22 YTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 22 ~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
...|.|.||.++ +|.+.|..+|+.||+|.+|+|+.++ +--|.|.+.|...|+-|++ ++++.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678899999665 9999999999999999999999885 3579999999999999997 79999999999999885
Q ss_pred c
Q 028475 100 L 100 (208)
Q Consensus 100 ~ 100 (208)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=2.8e-06 Score=71.58 Aligned_cols=79 Identities=27% Similarity=0.421 Sum_probs=70.0
Q ss_pred CCCEEE-EcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lf-VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
...++| |++|+..+++++|+.+|..+|.|..+++..++.++..+||++|+|.+......++......+.++.+.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 344555 9999999999999999999999999999999999999999999999999999888666677888888877664
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.09 E-value=4.6e-06 Score=66.77 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=53.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
.....+.+|||.||..++||++|+.+|+.|-....++|... ..-..||++|++.+.|..|+. +.+..|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 34566889999999999999999999999976666655332 124589999999999999984 565443
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.3e-05 Score=57.71 Aligned_cols=69 Identities=30% Similarity=0.409 Sum_probs=42.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h--C---CCeeCCeEeEEE
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--A---APVIDGRRANCN 96 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~--~---~~~i~g~~i~v~ 96 (208)
+.|.|.+++..++.++|++.|++||.|..|.+.... -.|+|.|.+.++|++|++ + . ...|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468888999999999999999999999999987653 389999999999999995 2 3 345667666665
Q ss_pred E
Q 028475 97 L 97 (208)
Q Consensus 97 ~ 97 (208)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=3.1e-05 Score=52.85 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=45.6
Q ss_pred CEEEEcCCCCCCcHHH----HHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 23 TKVFVGGLAWETQKET----MEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
..|+|.|||.+.+... |++++..+| .|.+| ..+.|+|.|.+.+.|++|.+ |++..+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988766 456666776 55554 14589999999999999996 79999999999999
Q ss_pred Ecc
Q 028475 97 LAC 99 (208)
Q Consensus 97 ~a~ 99 (208)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.94 E-value=6.2e-06 Score=66.26 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
..+.+.|.|.+|+..+.+.+|+++|..+|.+....++ .+++||+|+++++|.+||+ +++..+.++.|++..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 5567899999999999999999999999999555442 5599999999999999997 599999999999944
Q ss_pred c
Q 028475 98 A 98 (208)
Q Consensus 98 a 98 (208)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5.1e-05 Score=67.27 Aligned_cols=71 Identities=31% Similarity=0.316 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~ 87 (208)
..-++.++||||+||.-++.++|-.+|+ -||.|+-+.|-+|++-+.++|-+-|+|.+..+-.+||+..-.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvq 436 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQ 436 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEE
Confidence 3446789999999999999999999998 7999999999999888999999999999999999999654333
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.00011 Score=46.09 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=41.6
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai 81 (208)
+.|-|.+.+++.. +++.++|..||+|.++.+... .-+.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4677888887765 456668999999999988633 348999999999999985
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00022 Score=50.76 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEE-EeecC------CCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeE-
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR- 92 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~-i~~~~------~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~- 92 (208)
..+.|.|=+.|++ ....|.++|++||+|.+.. +.++. ........-.|+|+++.+|++||..|+..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456778888877 5677889999999998764 11100 0011245889999999999999999999998864
Q ss_pred eEEEEc
Q 028475 93 ANCNLA 98 (208)
Q Consensus 93 i~v~~a 98 (208)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446655
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.62 E-value=0.00016 Score=61.31 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=60.4
Q ss_pred CCCEEEEcCCCCCCcHHH------HHHHHhcCCCEeEEEEeecCCCC-CcceEE--EEEECCHHHHHHHHH-hCCCeeCC
Q 028475 21 TYTKVFVGGLAWETQKET------MEKYFEQFGEILEAVVITDKATG-RSKGYG--FVTFREPEAAMKACV-DAAPVIDG 90 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~------L~~~F~~~G~i~~v~i~~~~~tg-~~~G~a--fV~F~~~~~a~~Ai~-~~~~~i~g 90 (208)
.-.-+||-+|++.+..|+ -.++|.+||.|..|.|.+...+- ...+.+ +|+|.+.|+|.+||. .++..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345678999999887776 24799999999999876553111 112333 999999999999996 59999999
Q ss_pred eEeEEEEcc
Q 028475 91 RRANCNLAC 99 (208)
Q Consensus 91 ~~i~v~~a~ 99 (208)
+.|++.+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999988643
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.60 E-value=0.00028 Score=64.78 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEe-EEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
....++-|-|.|+|++++-+||.++|..|-.+- +|.+.++ +.|+..|-|.|.|++.++|.+|.+ +++..|..+.|.+
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 344556888999999999999999999986553 3444444 569999999999999999999996 6999999998887
Q ss_pred EE
Q 028475 96 NL 97 (208)
Q Consensus 96 ~~ 97 (208)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 64
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.58 E-value=0.00033 Score=56.19 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=61.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-CeEeEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~~i~v~ 96 (208)
..+...||+-|||.+++.+.|..+|.+|..-++++++..+ ++.|||+|.++..+..|.. +.+..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5677899999999999999999999999999999988764 6799999999999888874 5555444 5556665
Q ss_pred Ec
Q 028475 97 LA 98 (208)
Q Consensus 97 ~a 98 (208)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 54
No 104
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.55 E-value=0.00012 Score=63.73 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeec---CCCCC----------cceEEEEEECCHHHHHHHHHh
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KATGR----------SKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~tg~----------~~G~afV~F~~~~~a~~Ai~~ 83 (208)
.++.+.++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... +.+.+ .+-+|+|+|++.+.|.+|.++
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34468999999999999888999999999999999999765 32221 256899999999999999986
Q ss_pred CC
Q 028475 84 AA 85 (208)
Q Consensus 84 ~~ 85 (208)
.+
T Consensus 306 ~~ 307 (484)
T KOG1855|consen 306 LN 307 (484)
T ss_pred hc
Confidence 43
No 105
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.53 E-value=0.00068 Score=51.23 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCCCCCCEEEEcCCCC-----CCcHH----HHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCe
Q 028475 17 FGDTTYTKVFVGGLAW-----ETQKE----TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~-----~~te~----~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~ 87 (208)
...++..+|.|.-+.+ ....+ +|.+.|..||++.=+++..+ .-.|+|.+-++|.+|+.+++.+
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~ 93 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQ 93 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcE
Confidence 3456677888876651 12222 67788899999998888765 4689999999999999999999
Q ss_pred eCCeEeEEEEccc
Q 028475 88 IDGRRANCNLACL 100 (208)
Q Consensus 88 i~g~~i~v~~a~~ 100 (208)
++|+.|+|+...+
T Consensus 94 v~g~~l~i~LKtp 106 (146)
T PF08952_consen 94 VNGRTLKIRLKTP 106 (146)
T ss_dssp ETTEEEEEEE---
T ss_pred ECCEEEEEEeCCc
Confidence 9999999987753
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.52 E-value=0.00029 Score=61.06 Aligned_cols=77 Identities=9% Similarity=0.166 Sum_probs=61.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC-eEeEEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG-RRANCNL 97 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g-~~i~v~~ 97 (208)
+++.+|+..|+|.+++||+|+++|..-|...+..... ++.+-++.+.+++.|+|..|+. ++.+.+.. ..++|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 5778999999999999999999998877654443322 3345699999999999999985 68887764 4899998
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 853
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=8.3e-05 Score=63.88 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcC----CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQF----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
.-.|.+++||+++++.|+.++|..- |..+.|-+++.+ .|+..|-|||.|..+++|+.||..|...|.-|.|++.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4467788999999999999999632 244556565554 4889999999999999999999887777776666654
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.45 E-value=0.00025 Score=60.99 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCC-EeE--EEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGE-ILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANC 95 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v 95 (208)
.....|.+++||.+.+.|+|.++|..|-. |.. |+++.+. .|+..|-|||+|.++|+|.+|... +++....+.|+|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33568899999999999999999988863 443 6777775 489999999999999999999864 666667899999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
..+..
T Consensus 357 fp~S~ 361 (508)
T KOG1365|consen 357 FPCSV 361 (508)
T ss_pred eeccH
Confidence 87743
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00055 Score=60.88 Aligned_cols=63 Identities=27% Similarity=0.515 Sum_probs=49.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCC---CCcce---EEEEEECCHHHHHHHHH
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKG---YGFVTFREPEAAMKACV 82 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~~G---~afV~F~~~~~a~~Ai~ 82 (208)
..-.++||||+||+.++|++|...|..||.+ .|++...... --++| |+|+.|+++.++.+-|.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 3457899999999999999999999999986 4555532111 12466 99999999999987763
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.35 E-value=0.012 Score=50.68 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCC--CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC--CeEeEE
Q 028475 21 TYTKVFVGGLAW--ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--GRRANC 95 (208)
Q Consensus 21 ~~~~lfVgnLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~--g~~i~v 95 (208)
..+-|.+.-|.+ .+|-+-|..+....|+|.+|.|+.. ++ --|.|||++.+.|++|.+ +|+.+|. -..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 344455554444 4788889999999999999998865 23 379999999999999996 7998864 457889
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
++|++.
T Consensus 194 eyAkP~ 199 (494)
T KOG1456|consen 194 EYAKPT 199 (494)
T ss_pred EecCcc
Confidence 988763
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.0033 Score=49.30 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=54.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~ 87 (208)
.......+|.|.+||++.++.+|+++..+-|.|+...+.+| |.+.|+|...|+.+-||. ++...
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccc
Confidence 33445678999999999999999999999999999998877 388999999999999995 44433
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.21 E-value=0.00027 Score=66.11 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
-.+|+|.|+|+..|.++|+.+++++|.++++.++..+. |+++|-++|.|.++.++.+++. .+...+.-..++|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999999999999999999999999999888864 9999999999999999999984 466666666777777655
Q ss_pred C
Q 028475 101 G 101 (208)
Q Consensus 101 ~ 101 (208)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 113
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0028 Score=57.18 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=59.5
Q ss_pred CCCCEEEEcCCCCCCcH------HHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-Ce
Q 028475 20 TTYTKVFVGGLAWETQK------ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GR 91 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te------~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~ 91 (208)
--...|+|.|+|---.. .-|.++|+++|+|....++.+..+| .+||.|++|.+..+|+.||+ +|++.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34567888898864322 2366789999999999998887644 89999999999999999996 6888876 44
Q ss_pred EeEEE
Q 028475 92 RANCN 96 (208)
Q Consensus 92 ~i~v~ 96 (208)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55554
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.03 E-value=0.0054 Score=52.84 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred CCCCCCCCCCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 14 AGQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
+.+....+.+-+.|-+|... ++-+.|-.+|-.||.|++|++++.+ .|-|.|++.|..++++||. +|+..+.|.
T Consensus 279 a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 279 ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 34456677889999999875 6667799999999999999999874 6789999999999999995 788888999
Q ss_pred EeEEEEcc
Q 028475 92 RANCNLAC 99 (208)
Q Consensus 92 ~i~v~~a~ 99 (208)
+|.|..++
T Consensus 354 kl~v~~Sk 361 (494)
T KOG1456|consen 354 KLNVCVSK 361 (494)
T ss_pred eEEEeecc
Confidence 99988774
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.00 E-value=0.0006 Score=55.73 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCC--------CCcc----eEEEEEECCHHHHHHHHH-hCCCe
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSK----GYGFVTFREPEAAMKACV-DAAPV 87 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t--------g~~~----G~afV~F~~~~~a~~Ai~-~~~~~ 87 (208)
.+--||+++||+.++...|+++|+.||+|-+|.|.....+ +... --+.|+|.+...|.++.+ +|+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5568999999999999999999999999999988766544 2222 246699999999999887 59988
Q ss_pred eCCeE
Q 028475 88 IDGRR 92 (208)
Q Consensus 88 i~g~~ 92 (208)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98874
No 116
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0053 Score=39.70 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=45.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcC---CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
....+|+|.++. +++.++|+.+|..| ....+|.++.|. -|-|.|.+++.|.+||.
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 455689999996 57888999999988 234688898886 58899999999999985
No 117
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.89 E-value=0.005 Score=52.46 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCCCCCEEEEcCC----CCCCc-------HHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC
Q 028475 18 GDTTYTKVFVGGL----AWETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA 85 (208)
Q Consensus 18 ~~~~~~~lfVgnL----p~~~t-------e~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~ 85 (208)
.....++|.+.|+ ....+ +++|++-.++||.|.+|.|.-. .+.|.+-|.|.+.++|+.||+ |+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 3445678888887 11233 4567778899999999976533 257899999999999999997 699
Q ss_pred CeeCCeEeEEEEcccCC
Q 028475 86 PVIDGRRANCNLACLGV 102 (208)
Q Consensus 86 ~~i~g~~i~v~~a~~~~ 102 (208)
..++||.|..++-..+.
T Consensus 337 R~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeecceEEEEEEeCCcc
Confidence 99999999988765443
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.004 Score=56.00 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCEeEEEEeec-C--CCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 37 ETMEKYFEQFGEILEAVVITD-K--ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 37 ~~L~~~F~~~G~i~~v~i~~~-~--~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
|+++..+++||.|..|.+.++ . .-.-..|-.||+|.+.+++++|.+ ++|..+.++.|...+-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 345567789999999999877 2 112335789999999999999995 7999999999988765
No 119
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.86 E-value=0.00078 Score=58.73 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=58.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCC-eeCCeEeEEEEccc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAP-VIDGRRANCNLACL 100 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~-~i~g~~i~v~~a~~ 100 (208)
.+||++||.+.++..+|+.+|...-.--.-.++. ..||+||.+.+...|.+|++. +++ ++.|++++|+.+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999996431111111222 257999999999999999985 544 58999999998866
Q ss_pred CCCCC
Q 028475 101 GVQRS 105 (208)
Q Consensus 101 ~~~~~ 105 (208)
+..++
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 55544
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.78 E-value=0.0014 Score=60.40 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
-......|||..||..+++.++.++|..--.|++ |.|.+.+ +++.++.|||+|..++++.+|+. .+.+.+..+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3445678999999999999999999988777777 6666655 57889999999999888888875 4677788888888
Q ss_pred EE
Q 028475 96 NL 97 (208)
Q Consensus 96 ~~ 97 (208)
.-
T Consensus 509 ~s 510 (944)
T KOG4307|consen 509 DS 510 (944)
T ss_pred ec
Confidence 73
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.76 E-value=0.0092 Score=44.90 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCCCCCCCEEEEcCCCCCCc-HH---HHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCe
Q 028475 16 QFGDTTYTKVFVGGLAWETQ-KE---TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~t-e~---~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~ 91 (208)
...++++.+|.|+=|..++. .+ .+...++.||+|.+|.+.- +--|.|.|.|..+|-+|+..-.....|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 34678899999987665543 23 3455668999999997743 3379999999999999997654566788
Q ss_pred EeEEEEc
Q 028475 92 RANCNLA 98 (208)
Q Consensus 92 ~i~v~~a 98 (208)
.+.|+|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 8888775
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.75 E-value=6.1e-05 Score=70.22 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCC
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g 90 (208)
+..++||+||+..+.+++|...|..++.+..+.+.-...+++.+|.|+|+|.+++.+.+||+.+...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4568999999999999999999999999888877766677899999999999999999999864444333
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.58 E-value=0.0061 Score=52.80 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
....|.|.||.+.+|.+++..+|.-.|+|.++.|..+... ......|||.|.|...+..|-.+.+..+-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3448999999999999999999999999999988764321 2345699999999999998887766666566666654
Q ss_pred c
Q 028475 98 A 98 (208)
Q Consensus 98 a 98 (208)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.20 E-value=0.018 Score=48.16 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCEeEEEEeecCCCCCcc-eEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 36 e~~L~~~F~~~G~i~~v~i~~~~~tg~~~-G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
|+++++..++||.|..|.|..++..-... ---||+|+..++|.+|+. +|+..+.|+.+..-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45688899999999999888876433332 347999999999999996 699999999876543
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.01 E-value=0.0033 Score=51.49 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=47.7
Q ss_pred HHHHHHh-cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 38 TMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 38 ~L~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
+|...|+ +||+|+++.|..+. .-...|=++|.|..+++|++|++ +|+.-+.|++|.+++..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 89999998665543 23447889999999999999996 69999999999988654
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.59 E-value=0.013 Score=48.00 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=52.7
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
+.|+|.||+.-++-+.|++.|+.||+|+...+..|- .++..+-++|+|...-.+.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 789999999999999999999999999887666663 478889999999999999998853
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.51 E-value=0.068 Score=36.61 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
..-.+|. .|.++...||.++|+.||.| .|.++.|. -|||...+.+.|..++..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 3445555 89999999999999999998 66777765 799999999999988853
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.29 E-value=0.0064 Score=57.53 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=61.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i~v 95 (208)
.+...+.+||++||+..+++.+|+..|..+|.|.+|.|-+.+. +.-.-++||.|.+.+.+-+|+ ++.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 4456688999999999999999999999999999999876643 333459999999999888887 45555544333444
Q ss_pred E
Q 028475 96 N 96 (208)
Q Consensus 96 ~ 96 (208)
.
T Consensus 446 g 446 (975)
T KOG0112|consen 446 G 446 (975)
T ss_pred c
Confidence 3
No 129
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=0.14 Score=43.10 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=50.0
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeE-eEEEE
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR-ANCNL 97 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~-i~v~~ 97 (208)
.=|-|-+.++.. -.-|..+|++||+|.+..... .--+-+|.|.+..+|++||..++..|+|.. |-|+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 344455666553 356788999999998765432 234889999999999999999999998864 33443
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.11 E-value=0.03 Score=53.19 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=64.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC--eEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g--~~i~ 94 (208)
.....+.+||++|..++....|...|..||.|..|.+-.. .-|++|.+++...++.|++ +.+..|.+ +.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4456789999999999999999999999999999887443 4599999999999999996 66666653 5688
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 887754
No 131
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.82 E-value=0.023 Score=50.41 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 24 KVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 24 ~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
.|-+.-.++. -|.++|..+|.+||+|..|.+-... -.|.|+|.+..+|-+|-.-++..|+++.|+|.|-.+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3434444444 4568899999999999999886553 378999999999987777788899999999999876
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.45 E-value=0.074 Score=48.20 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=57.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHh--cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH---hCCCeeCCeEeE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFE--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV---DAAPVIDGRRAN 94 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~--~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~---~~~~~i~g~~i~ 94 (208)
.+.|.|.++-||+.+-+|+++.+|+ .+-++.+|.+-.+. -=||+|+++.||+.|.+ ..-++|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3567788899999999999999995 48888899886663 24899999999999974 245568888876
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
.+++.
T Consensus 246 ARIKa 250 (684)
T KOG2591|consen 246 ARIKA 250 (684)
T ss_pred hhhhh
Confidence 65543
No 133
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.37 E-value=0.064 Score=48.93 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=62.2
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe---eCC
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV---IDG 90 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~---i~g 90 (208)
+.....+..|+|.||-.-.|.-+|++++. ..|.|++. ..|+ -+-.|||.|.+.++|.+.+. +++.. -+.
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 34667788999999999999999999998 56777766 3343 26689999999999998885 67765 467
Q ss_pred eEeEEEEccc
Q 028475 91 RRANCNLACL 100 (208)
Q Consensus 91 ~~i~v~~a~~ 100 (208)
+.|.+.+...
T Consensus 512 K~L~adf~~~ 521 (718)
T KOG2416|consen 512 KHLIADFVRA 521 (718)
T ss_pred ceeEeeecch
Confidence 7888887743
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.28 E-value=0.018 Score=48.94 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCCcHHHHH---HHHhcCCCEeEEEEeecCC--CC-CcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 22 YTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKA--TG-RSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~--tg-~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+||-+|+....++++. +.|.+||.|.+|.+..++. +. -...-++|+|+.+++|.+||. .++..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888876666544 4788999999998887662 11 122358999999999999996 488888888766
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 65443
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.81 E-value=0.1 Score=40.96 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=46.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhc-CCCE---eEEEEeecCCC-C-CcceEEEEEECCHHHHHHHHH-hCCCeeCC--
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDKAT-G-RSKGYGFVTFREPEAAMKACV-DAAPVIDG-- 90 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~~t-g-~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g-- 90 (208)
....+|.|++||+..||+++.+.++. ++.. ..+.-.....+ . ..-.-|+|.|.+.+++..-+. .+++.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999887765 5554 33331122111 1 123579999999999888775 47776432
Q ss_pred ---eEeEEEEcc
Q 028475 91 ---RRANCNLAC 99 (208)
Q Consensus 91 ---~~i~v~~a~ 99 (208)
....|++|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 235566663
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.55 E-value=0.074 Score=44.94 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCC-CeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~-~~i~g~~i~v~~a 98 (208)
...+++|++++.+.+.+.++..++...|.+..+.+........+++++.++|+..+.+..||++.. ..+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 457899999999999999899999999988887777766678889999999999999999998755 4566666665554
Q ss_pred c
Q 028475 99 C 99 (208)
Q Consensus 99 ~ 99 (208)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 137
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.38 E-value=0.94 Score=29.62 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeEE
Q 028475 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANC 95 (208)
Q Consensus 33 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v 95 (208)
.++-++++..+.+|.- . +|..|+ .|| ||.|.+.++|+++... ++..+....+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778899999999864 2 344553 344 7999999999999974 777776665543
No 138
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.26 E-value=0.12 Score=47.70 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=57.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v~~ 97 (208)
-.+..++||+|+...+..+-++.+...+|.|..+.... |+|++|.......+|+.+ ....++++.+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 35667999999999999999999999999987764321 999999999999999964 66678888776654
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.15 E-value=1.2 Score=29.48 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=36.6
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCC-----CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 24 ~lfVg-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+|||. +--..++..+|..++..-+ .|-.|+|..+ |+||+-... .|+.+++ +++..+.|+.++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 44553 2234578888988886654 4557777655 899987754 6667775 69999999999998
Q ss_pred Ec
Q 028475 97 LA 98 (208)
Q Consensus 97 ~a 98 (208)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.15 E-value=0.7 Score=36.52 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.8
Q ss_pred cHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEeEEEEcc
Q 028475 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRANCNLAC 99 (208)
Q Consensus 35 te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i~v~~a~ 99 (208)
..+.|+++|..++.+....++.. -+-..|.|.+.++|.+|.. ++ +..+.|..++|-++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999888777654 3367899999999999986 46 788999999998884
No 141
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.05 E-value=3.6 Score=29.67 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeC
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVID 89 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~ 89 (208)
...+-+...|..++.++|..+.+.+ ..|+.++|++|. ...+=.+.+.|.+.++|+.-.+. ||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444455566666776555554 467788998874 33567899999999999998864 887654
No 142
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.56 E-value=7.3 Score=36.70 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=46.6
Q ss_pred CCEEEEc-CCCCCCcHHHHHHHHhcCCCE-----eEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 22 YTKVFVG-GLAWETQKETMEKYFEQFGEI-----LEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 22 ~~~lfVg-nLp~~~te~~L~~~F~~~G~i-----~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+.++||. +-...++..+|..++..-+.| -.|+|..+ |.||+-.... +...++ +++..+.|+.|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKGM-PGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChhh-HHHHHHHhccccccCCceE
Confidence 4456664 234467888888888655444 34556544 8999977444 556665 678889999999
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
|+.+.
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 98774
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=0.66 Score=42.15 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCe---eC-CeEeEE
Q 028475 22 YTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPV---ID-GRRANC 95 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~---i~-g~~i~v 95 (208)
-+++-|.|++...|-..|.+.-+ ..|.-..+.++.|-.+....|||||.|.+.+++.++.+. |++. ++ .+.+++
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 34444455554444444333322 245556677777766667789999999999999998864 6654 44 344566
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
.+|+.
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 66654
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.28 E-value=0.53 Score=44.86 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe--eCCeEeEEEEcc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV--IDGRRANCNLAC 99 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~--i~g~~i~v~~a~ 99 (208)
.+..+.|.+-..+...|..+|++||.|.+++.+++-. .|.|+|.+.+.|..|++ +++++ +-|.+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455566667788889999999999999999888743 89999999999999996 67776 457888898886
Q ss_pred cCCCCC
Q 028475 100 LGVQRS 105 (208)
Q Consensus 100 ~~~~~~ 105 (208)
.-....
T Consensus 373 ~~~~~e 378 (1007)
T KOG4574|consen 373 TLPMYE 378 (1007)
T ss_pred cccccc
Confidence 544433
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.07 E-value=0.058 Score=46.89 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=52.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCC
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g 90 (208)
..+|+|.+|...+...++.+.|..+|+|...++... -..-+|-|+|....+...|+.+++.++.-
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k~ 215 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERKR 215 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhhh
Confidence 378999999999999999999999999987766433 23446779999988888888887776553
No 146
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.79 E-value=5.3 Score=39.04 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=4.7
Q ss_pred CCCCCCCccc
Q 028475 165 ADYTYPTVCT 174 (208)
Q Consensus 165 ~~y~yp~~~y 174 (208)
++|.-|..+|
T Consensus 1241 Gdyrnpgggy 1250 (1282)
T KOG0921|consen 1241 GDYRNPGGGY 1250 (1282)
T ss_pred CCCCCCCCCc
Confidence 3444554444
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.81 E-value=6.4 Score=34.76 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=50.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
..+.+-.+-|=|-++|.....+||...|+.|+. -.+|.++.|+ .+|-.|.+...|..||.+
T Consensus 385 l~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 385 LRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 344556788889999999999999999999864 4567777665 799999999999999976
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.14 E-value=3 Score=27.44 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=43.5
Q ss_pred HHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 37 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
++|++.|.+.| ++..+.-+..+++..+--.-+|+.....+... .++-..|+++.|+|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 46888888888 78888888888877777788888876544333 23445688998888754
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=76.37 E-value=0.3 Score=43.08 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVV-ITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..+++-|.|+|+...++-|..++.+||.++.|.. ++++.| ...-|++...+.+..||. ++++.+....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4667899999999999999999999999988864 334332 233478888999999996 6999999998888876
Q ss_pred c
Q 028475 99 C 99 (208)
Q Consensus 99 ~ 99 (208)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 3
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=74.04 E-value=8.5 Score=27.99 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEEC-CHHHHHHHHHh
Q 028475 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (208)
Q Consensus 34 ~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~-~~~~a~~Ai~~ 83 (208)
.+.++|++.|+.|..++ ++.+.++ ..+.|++.|+|. +-.-...|+++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35578999999998874 5555664 357899999997 55666666654
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.44 E-value=8.3 Score=25.23 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 37 ~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
++|++.|...| +|..+.-+..+.+.+.--.-||+.+...+...++ +-..+++..|+|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecC
Confidence 56788887777 6788877777766777778888887665533332 334578888888765
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=72.13 E-value=11 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCEeEEEE
Q 028475 37 ETMEKYFEQFGEILEAVV 54 (208)
Q Consensus 37 ~~L~~~F~~~G~i~~v~i 54 (208)
++||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976544
No 153
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=66.82 E-value=1.2 Score=36.21 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=53.7
Q ss_pred CCCCCCEEEEcC----CCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 18 GDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 18 ~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
+++...+++.|+ |...++++.+.+.|+.-+.++.+++.++.+ ++.+-+.|+++....+.-.++.
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 455667888888 888999999999999999999999998876 8888999998877666666664
No 154
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.81 E-value=12 Score=31.68 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=35.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCH
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 74 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~ 74 (208)
-+-|+|+||+.++.-.||+..+.+-+.+ -..|.+. .++|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 4459999999999999999999876643 2233222 2477899999654
No 155
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=64.25 E-value=19 Score=31.37 Aligned_cols=10 Identities=30% Similarity=-0.094 Sum_probs=5.3
Q ss_pred eeEEeeeCCc
Q 028475 184 FVQYVYLNSN 193 (208)
Q Consensus 184 ~~q~~~~~~~ 193 (208)
++|...|||.
T Consensus 417 g~qg~g~~~~ 426 (465)
T KOG3973|consen 417 GVQGTGWNPQ 426 (465)
T ss_pred cccCCccCCC
Confidence 4555555553
No 156
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=63.99 E-value=12 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEEEECCHHHHHHHHHhC--CCeeCCeEeEEEEc
Q 028475 67 GFVTFREPEAAMKACVDA--APVIDGRRANCNLA 98 (208)
Q Consensus 67 afV~F~~~~~a~~Ai~~~--~~~i~g~~i~v~~a 98 (208)
|.|+|+++..|++.+.+. ...+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 679999999999999764 44577777776644
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.55 E-value=18 Score=30.63 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCC-------CCCcceEEEEEECCHHHHHHHH----H-h--
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA-------TGRSKGYGFVTFREPEAAMKAC----V-D-- 83 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-------tg~~~G~afV~F~~~~~a~~Ai----~-~-- 83 (208)
++...++|...||..+++--.+...|.+||+|++|.++.+.. ..+......+.|-+.+.+..-- . +
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 445678899999999999888888999999999999988751 1233467889999888876542 1 1
Q ss_pred CCCeeCCeEeEEEEccc
Q 028475 84 AAPVIDGRRANCNLACL 100 (208)
Q Consensus 84 ~~~~i~g~~i~v~~a~~ 100 (208)
-...+....|.+++...
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 23457788888888765
No 158
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.32 E-value=41 Score=30.28 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=53.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~ 89 (208)
...|.|=.+|..+|-.||..|...+ -.|.+++|++|.. -.+=...|.|.+.++|...-+ .||..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7788888899999999999998654 5788999999742 234578899999999999886 4887654
No 159
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.16 E-value=65 Score=21.62 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=38.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-CC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Q 028475 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai 81 (208)
.-|+-.++...+..+|++.++. |+ .|.+|..+.-+. ..-=|||.+...++|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 3455567889999999998876 55 567776555442 2236999998888777653
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=51.57 E-value=27 Score=27.49 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHH
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEA 76 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~ 76 (208)
.........+++.+++..++++++...|..+|.+....+...........+.++.+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHh
Confidence 3455678899999999999999999999999999777776654433333344433333333
No 161
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.08 E-value=67 Score=21.94 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=38.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-CC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Q 028475 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (208)
Q Consensus 25 lfVgnLp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai 81 (208)
-|+-.++...+..+|++.+++ |+ .|.+|..+.-+. ..-=|+|.+...++|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 344456889999999999976 66 577776655542 2236999999888887764
No 162
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.24 E-value=1.3e+02 Score=28.12 Aligned_cols=82 Identities=15% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCCCCCEEEEcCCCCC-CcHHHHHHHHhcC----CCEeEEEEeecC----------CCCC-------------------
Q 028475 17 FGDTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR------------------- 62 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~----------~tg~------------------- 62 (208)
.-...+++|-|-|+.|. +..++|.-+|+.| |.|.+|.|-... .+|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567889999999996 7888999999876 588888763321 1111
Q ss_pred -----------------c-ceEEEEEECCHHHHHHHHHh-CCCeeCC--eEeEEEEc
Q 028475 63 -----------------S-KGYGFVTFREPEAAMKACVD-AAPVIDG--RRANCNLA 98 (208)
Q Consensus 63 -----------------~-~G~afV~F~~~~~a~~Ai~~-~~~~i~g--~~i~v~~a 98 (208)
. -=||.|+|++.+.|.+.-+. +|.++.. ..|.+++.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 12899999999999887764 8887764 44555544
No 163
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=46.86 E-value=71 Score=27.95 Aligned_cols=12 Identities=8% Similarity=-0.493 Sum_probs=5.5
Q ss_pred ccccccccccee
Q 028475 172 VCTTFLFLLPFI 183 (208)
Q Consensus 172 ~~y~~~~~~p~~ 183 (208)
++|...+++|..
T Consensus 416 sg~qg~g~~~~~ 427 (465)
T KOG3973|consen 416 SGVQGTGWNPQG 427 (465)
T ss_pred ccccCCccCCCC
Confidence 444444455543
No 164
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.50 E-value=22 Score=28.10 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCCCEEEEcCCCCCCcH-----HHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe-E
Q 028475 20 TTYTKVFVGGLAWETQK-----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-R 92 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te-----~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~-~ 92 (208)
+-..++.+.+++.++-. ...+.+|.++-+....++++. .+..-|.|.+.+.|.+|.. ++...+.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34456777777765332 223455666555544444433 4567789999999999985 588888888 7
Q ss_pred eEEEEcc
Q 028475 93 ANCNLAC 99 (208)
Q Consensus 93 i~v~~a~ 99 (208)
+++-++.
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 7777773
No 165
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.77 E-value=20 Score=29.48 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v 52 (208)
.....-.+||+-|+|..+|++.|.++.++.|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445667899999999999999999999999865544
No 166
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=43.57 E-value=19 Score=20.55 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.4
Q ss_pred CCCcHHHHHHHHhcCC
Q 028475 32 WETQKETMEKYFEQFG 47 (208)
Q Consensus 32 ~~~te~~L~~~F~~~G 47 (208)
..+++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.52 E-value=28 Score=29.46 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=21.8
Q ss_pred EEEEECCHHHHHHHHHh-CCCeeCCeEeEEEEcc
Q 028475 67 GFVTFREPEAAMKACVD-AAPVIDGRRANCNLAC 99 (208)
Q Consensus 67 afV~F~~~~~a~~Ai~~-~~~~i~g~~i~v~~a~ 99 (208)
|||+|+++.+|+.|++. ..+. .+.++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 79999999999999974 3222 2344666663
No 168
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.07 E-value=17 Score=25.16 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHH
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYF 43 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F 43 (208)
.....++|-|.|||...+|++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34567899999999999999999765
No 169
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.91 E-value=4.7 Score=36.98 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~ 89 (208)
-..++|||.|++++.+-++|..+++.+--+.++.+..+..-.+...+..|+|.---....|+. +|++.+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 356789999999999999999999988766666554443333445678888875555555553 4554433
No 170
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.50 E-value=1.4e+02 Score=20.44 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Q 028475 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (208)
Q Consensus 36 e~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai 81 (208)
.+.+++++++.| +++++.+.. |..--...+++.|.+.|.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHH
Confidence 456788887765 777777764 444668889999999888776
No 171
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.42 E-value=37 Score=28.68 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=26.9
Q ss_pred CCEEEEcCCCCC------------CcHHHHHHHHhcCCCEeEEEEee
Q 028475 22 YTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVIT 56 (208)
Q Consensus 22 ~~~lfVgnLp~~------------~te~~L~~~F~~~G~i~~v~i~~ 56 (208)
..+|++.+||-. .+|+-|+..|+.||+|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 456777776642 56788999999999999988743
No 172
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.43 E-value=20 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCCcHH--------HHHHHHhc--CCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH
Q 028475 21 TYTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai 81 (208)
..+.+|+.+...+.+.+ ++..+|.. .+.+..+...++-.....+|..|++|...+.+++.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34566777666665544 89999987 677888888777666778899999999999999998
No 173
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=30.70 E-value=1.3e+02 Score=18.31 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=39.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCH----HHHHHHHHhCC
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMKACVDAA 85 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~----~~a~~Ai~~~~ 85 (208)
++.|.++.-..-...|++.+.+.-.|.++.+... .+-.-|+|... ++..++|+.-|
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 4667777666667889999999888988888655 34677888744 56666665443
No 174
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.35 E-value=83 Score=28.76 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.5
Q ss_pred EEcCCCCCCc---HHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEe
Q 028475 26 FVGGLAWETQ---KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (208)
Q Consensus 26 fVgnLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i 93 (208)
+||||..-.. ...+.++=++||+|-.+++-.. -.|.-.+.+.|+.|+..++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 4777755433 3456666678999998777332 357888999999999999988988864
No 175
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.32 E-value=1.2e+02 Score=20.74 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEE
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTF 71 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F 71 (208)
..-+|||+++..+.|.-.+.+.+..+.-.-+ ++.... . ..||.|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~-n-eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDN-N-EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccC-C-CCCEEEEEe
Confidence 4568999999988888777777655443323 333322 2 688999776
No 176
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=28.47 E-value=1.3e+02 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.5
Q ss_pred CEeEEEEeecCCCCCcceEEEEEECC
Q 028475 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (208)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (208)
+|.+|+|..-...++.+++|=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788887766568899999999986
No 177
>PHA01632 hypothetical protein
Probab=27.85 E-value=63 Score=20.33 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.2
Q ss_pred cCCCCCCcHHHHHHHHhc
Q 028475 28 GGLAWETQKETMEKYFEQ 45 (208)
Q Consensus 28 gnLp~~~te~~L~~~F~~ 45 (208)
-.+|..-||++|++.+.+
T Consensus 22 eqvp~kpteeelrkvlpk 39 (64)
T PHA01632 22 EQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhcCCCCCHHHHHHHHHH
Confidence 478999999999998765
No 178
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.49 E-value=2.3e+02 Score=20.81 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHhc-CCC----EeEEEEeecCCCCCcceEEEEEECCHHHHHH
Q 028475 33 ETQKETMEKYFEQ-FGE----ILEAVVITDKATGRSKGYGFVTFREPEAAMK 79 (208)
Q Consensus 33 ~~te~~L~~~F~~-~G~----i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~ 79 (208)
+++.+||++-+++ |-. |.-..+...-.+|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5778888887754 332 222233334456788899975 677776653
No 179
>PF15063 TC1: Thyroid cancer protein 1
Probab=26.44 E-value=43 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI 49 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i 49 (208)
+...++--+.||=.+++.++|..+|.+-|..
T Consensus 22 dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 22 DTASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred chHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3445566677888899999999999998864
No 180
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.35 E-value=80 Score=20.43 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEE
Q 028475 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (208)
Q Consensus 34 ~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV 69 (208)
.-|.+|+++|-+-.+|+++.|...+.- .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 446678888888889999998877532 3455555
No 181
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.27 E-value=2.2e+02 Score=20.11 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHh-cCCCEeEEEEeecC----CCCCcceEEEEEECCHHHHHH
Q 028475 32 WETQKETMEKYFE-QFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMK 79 (208)
Q Consensus 32 ~~~te~~L~~~F~-~~G~i~~v~i~~~~----~tg~~~G~afV~F~~~~~a~~ 79 (208)
.+.+..+|++.+. .++.=.+..++..- ..+++.|||.| |++.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3567788887774 45532233333322 22456677765 677776654
No 182
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.18 E-value=1.9e+02 Score=17.95 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred cHHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCe
Q 028475 35 QKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (208)
Q Consensus 35 te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~ 87 (208)
.-.++-++|.+.| .|..+.+.... . ++.-.+.+++.+.+.++|+.++.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCCCE
Confidence 4456778887766 57777654432 2 466666778887888888766654
No 183
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.29 E-value=1.8e+02 Score=20.39 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred CEeEEEEeecCCCCCcceEEEEEECC
Q 028475 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (208)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (208)
+|++|+|..-...++-+++|=|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 36777766554457889999999986
No 184
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=21.87 E-value=5.7e+02 Score=22.76 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.5
Q ss_pred ceEEEEEE
Q 028475 64 KGYGFVTF 71 (208)
Q Consensus 64 ~G~afV~F 71 (208)
+|.+++.+
T Consensus 342 ~G~ai~l~ 349 (456)
T PRK10590 342 TGEALSLV 349 (456)
T ss_pred CeeEEEEe
Confidence 34554333
No 185
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.57 E-value=17 Score=22.77 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=18.7
Q ss_pred cceEEEEEECC-HHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 63 SKGYGFVTFRE-PEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 63 ~~G~afV~F~~-~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
.+|||||.-++ .++.-=.-+....-++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 47899999887 11110000112334677788887764
No 186
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.79 E-value=1.8e+02 Score=20.12 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCcHHHHHH---HHhcCCCEeEEEE--eecCCCCCcceEEEEEEC
Q 028475 24 KVFVGGLAWETQKETMEK---YFEQFGEILEAVV--ITDKATGRSKGYGFVTFR 72 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~---~F~~~G~i~~v~i--~~~~~tg~~~G~afV~F~ 72 (208)
..|+.+||.++.+.++.. .+..+..-..|.. ..........|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 358889999998877654 4444443233332 123445667777766554
No 187
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=16 Score=32.77 Aligned_cols=77 Identities=6% Similarity=-0.159 Sum_probs=56.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEeEEEEccc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i~v~~a~~ 100 (208)
.+.|+..|+..++++++.-+|.-+|.|..+.+-+.-..+..+-.+||+-.. +++..+| .+....+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778899999999999999999999988876655445566678877653 4455666 3566667777788777643
No 188
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.01 E-value=53 Score=24.21 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=41.4
Q ss_pred CEEEEcCC-C-CCCcHHHHHHHHhc-CCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 23 TKVFVGGL-A-WETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 23 ~~lfVgnL-p-~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
+...|+.+ . ...+-+.|.+.+.+ .+....+.+..- ..++..+.|.+++++.++++.....+++..+.+.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~ 87 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQ 87 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhh
Confidence 34455554 2 23556666666643 333223333221 2468899999999999998766666777655554
Done!