Query 028475
Match_columns 208
No_of_seqs 234 out of 1919
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.3E-23 2.2E-27 156.6 13.4 84 18-101 35-119 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-22 7.7E-27 142.7 12.0 81 20-100 17-98 (99)
3 2dgs_A DAZ-associated protein 99.9 1.5E-21 5.3E-26 137.7 12.9 86 16-101 4-89 (99)
4 3s8s_A Histone-lysine N-methyl 99.9 8.8E-22 3E-26 142.2 11.5 82 19-100 3-85 (110)
5 2cpz_A CUG triplet repeat RNA- 99.9 1.8E-21 6.1E-26 141.1 12.8 90 13-102 16-106 (115)
6 1u6f_A Tcubp1, RNA-binding pro 99.9 2.5E-21 8.4E-26 144.8 13.1 86 16-101 36-122 (139)
7 2cqd_A RNA-binding region cont 99.9 5.8E-21 2E-25 138.6 14.5 87 14-101 9-96 (116)
8 3q2s_C Cleavage and polyadenyl 99.9 3.1E-22 1.1E-26 162.3 8.6 80 21-100 67-149 (229)
9 3s7r_A Heterogeneous nuclear r 99.9 3.3E-21 1.1E-25 132.8 11.9 83 16-98 5-87 (87)
10 2dgo_A Cytotoxic granule-assoc 99.9 1.4E-20 4.6E-25 136.4 15.5 90 15-104 8-98 (115)
11 1whw_A Hypothetical protein ri 99.9 6.7E-21 2.3E-25 134.3 12.5 85 18-102 4-89 (99)
12 2cq0_A Eukaryotic translation 99.9 7.1E-21 2.4E-25 135.2 12.3 87 15-101 8-95 (103)
13 2lxi_A RNA-binding protein 10; 99.9 8.2E-22 2.8E-26 137.6 7.2 82 22-103 1-85 (91)
14 2khc_A Testis-specific RNP-typ 99.9 3E-21 1E-25 140.5 10.4 84 15-98 33-117 (118)
15 2cqg_A TDP-43, TAR DNA-binding 99.9 1.2E-20 4E-25 134.1 13.3 88 15-103 8-95 (103)
16 2dng_A Eukaryotic translation 99.9 1E-20 3.4E-25 134.5 12.8 86 15-101 8-93 (103)
17 2dh8_A DAZ-associated protein 99.9 4.7E-21 1.6E-25 136.6 10.9 87 15-101 9-95 (105)
18 2lkz_A RNA-binding protein 5; 99.9 1.3E-21 4.4E-26 137.8 7.8 83 17-99 4-93 (95)
19 2dnm_A SRP46 splicing factor; 99.9 5.9E-21 2E-25 135.6 11.2 87 15-101 6-93 (103)
20 1x5u_A Splicing factor 3B subu 99.9 8.9E-21 3E-25 135.1 12.0 87 15-101 8-95 (105)
21 2cq4_A RNA binding motif prote 99.8 1.3E-21 4.4E-26 141.7 7.4 87 17-103 20-106 (114)
22 2dnz_A Probable RNA-binding pr 99.8 1.5E-20 5.2E-25 131.4 12.4 81 20-100 3-84 (95)
23 2dhg_A TRNA selenocysteine ass 99.8 8.9E-21 3E-25 134.9 11.4 87 17-104 4-93 (104)
24 1x5t_A Splicing factor 3B subu 99.8 9.2E-21 3.2E-25 132.8 11.3 83 19-101 2-86 (96)
25 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-20 3.8E-25 134.5 11.9 85 16-101 9-94 (104)
26 2rs2_A Musashi-1, RNA-binding 99.8 7E-21 2.4E-25 137.1 10.9 88 15-102 18-105 (109)
27 3md1_A Nuclear and cytoplasmic 99.8 1.6E-20 5.5E-25 128.0 12.1 80 22-101 1-81 (83)
28 1x4h_A RNA-binding protein 28; 99.8 1.4E-20 4.9E-25 135.2 12.4 88 16-103 9-103 (111)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8E-21 2.7E-25 134.6 10.8 86 16-101 6-92 (102)
30 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-20 3.9E-25 133.8 11.3 85 17-101 7-92 (102)
31 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.5E-25 129.1 11.6 82 20-101 4-86 (87)
32 1x4b_A Heterogeneous nuclear r 99.8 4.6E-21 1.6E-25 139.1 9.2 84 18-101 23-106 (116)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-20 3.8E-25 134.8 10.8 87 15-101 6-96 (106)
34 2cph_A RNA binding motif prote 99.8 1.8E-20 6.3E-25 133.8 11.8 87 15-101 8-97 (107)
35 3ex7_B RNA-binding protein 8A; 99.8 9.6E-21 3.3E-25 139.3 10.6 88 16-103 16-104 (126)
36 2fy1_A RNA-binding motif prote 99.8 2.7E-20 9.3E-25 135.5 12.5 83 18-101 3-86 (116)
37 2dnh_A Bruno-like 5, RNA bindi 99.8 3.3E-20 1.1E-24 132.1 12.7 86 16-102 9-98 (105)
38 2cpf_A RNA binding motif prote 99.8 2.1E-20 7.3E-25 131.5 11.5 83 19-101 2-88 (98)
39 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-20 5.6E-25 131.0 10.9 85 15-99 9-94 (94)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.1E-20 7.2E-25 128.0 10.9 80 19-98 4-84 (85)
41 1p27_B RNA-binding protein 8A; 99.8 2.6E-20 8.8E-25 132.9 11.5 87 15-101 16-103 (106)
42 2cpe_A RNA-binding protein EWS 99.8 2.9E-20 1E-24 134.2 11.9 86 16-101 9-103 (113)
43 2do4_A Squamous cell carcinoma 99.8 4.4E-20 1.5E-24 130.4 12.5 85 16-101 11-96 (100)
44 2cqc_A Arginine/serine-rich sp 99.8 2.8E-20 9.5E-25 130.0 11.3 85 15-99 8-93 (95)
45 2do0_A HnRNP M, heterogeneous 99.8 1.6E-19 5.4E-24 130.4 15.6 84 16-100 9-93 (114)
46 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.1E-21 1.4E-25 136.1 6.9 88 13-101 10-98 (100)
47 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.7E-20 2.6E-24 129.8 13.4 86 15-102 8-94 (103)
48 2d9p_A Polyadenylate-binding p 99.8 4.6E-20 1.6E-24 131.0 12.0 86 15-102 8-94 (103)
49 4f25_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 134.8 11.4 80 21-102 4-84 (115)
50 3p5t_L Cleavage and polyadenyl 99.8 3.9E-21 1.3E-25 133.6 6.2 80 23-102 2-84 (90)
51 2ywk_A Putative RNA-binding pr 99.8 3.8E-20 1.3E-24 129.4 11.2 84 15-99 9-93 (95)
52 1oo0_B CG8781-PA, drosophila Y 99.8 4.1E-20 1.4E-24 132.8 11.6 88 15-102 19-107 (110)
53 3ucg_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 127.7 11.1 80 21-100 5-84 (89)
54 2div_A TRNA selenocysteine ass 99.8 4E-20 1.4E-24 130.3 11.3 83 17-99 4-92 (99)
55 2jrs_A RNA-binding protein 39; 99.8 2.8E-20 9.5E-25 133.8 10.6 89 13-101 17-106 (108)
56 2x1f_A MRNA 3'-END-processing 99.8 5E-20 1.7E-24 129.3 11.4 82 21-102 1-83 (96)
57 2la6_A RNA-binding protein FUS 99.8 4.6E-20 1.6E-24 130.2 11.2 84 15-98 6-98 (99)
58 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-20 9.2E-25 132.6 10.1 82 16-99 9-90 (102)
59 2cq3_A RNA-binding protein 9; 99.8 1.7E-19 5.9E-24 128.0 14.3 86 15-102 8-94 (103)
60 1s79_A Lupus LA protein; RRM, 99.8 1.6E-20 5.3E-25 134.1 8.7 82 18-100 7-88 (103)
61 1x4a_A Splicing factor, argini 99.8 1.3E-19 4.3E-24 130.1 13.2 85 13-100 13-98 (109)
62 2m2b_A RNA-binding protein 10; 99.8 7.9E-21 2.7E-25 141.0 7.0 88 13-101 14-108 (131)
63 3ns6_A Eukaryotic translation 99.8 6.6E-21 2.2E-25 135.1 6.2 83 19-101 3-93 (100)
64 2cpy_A RNA-binding protein 12; 99.8 7.4E-21 2.5E-25 137.9 6.4 85 17-102 10-95 (114)
65 2dgw_A Probable RNA-binding pr 99.8 1.3E-19 4.4E-24 125.9 12.3 84 16-101 4-87 (91)
66 2mss_A Protein (musashi1); RNA 99.8 9.9E-21 3.4E-25 126.8 6.4 75 24-98 1-75 (75)
67 3n9u_C Cleavage and polyadenyl 99.8 5.4E-20 1.8E-24 140.8 11.1 80 21-100 54-136 (156)
68 4a8x_A RNA-binding protein wit 99.8 6E-20 2.1E-24 126.4 10.2 81 20-100 2-84 (88)
69 2kxn_B Transformer-2 protein h 99.8 4.2E-20 1.4E-24 137.0 9.7 87 15-101 39-126 (129)
70 2jwn_A Embryonic polyadenylate 99.8 9.4E-20 3.2E-24 133.6 11.4 80 21-100 35-114 (124)
71 2cqp_A RNA-binding protein 12; 99.8 4.7E-20 1.6E-24 129.7 9.4 83 17-99 10-93 (98)
72 1wg5_A Heterogeneous nuclear r 99.8 1.1E-19 3.9E-24 129.5 11.0 83 17-100 10-93 (104)
73 3ulh_A THO complex subunit 4; 99.8 2E-19 7E-24 128.4 12.2 83 16-99 23-106 (107)
74 2dis_A Unnamed protein product 99.8 1.6E-19 5.6E-24 129.3 11.7 85 19-103 5-94 (109)
75 2dgx_A KIAA0430 protein; RRM d 99.8 2E-19 6.9E-24 126.3 11.2 79 20-101 7-90 (96)
76 2ek1_A RNA-binding protein 12; 99.8 4.6E-20 1.6E-24 128.9 7.9 83 17-99 10-93 (95)
77 1p1t_A Cleavage stimulation fa 99.8 2.5E-20 8.7E-25 132.4 6.3 85 18-102 4-89 (104)
78 2err_A Ataxin-2-binding protei 99.8 1.4E-19 4.7E-24 130.2 10.2 87 13-101 20-107 (109)
79 2dgu_A Heterogeneous nuclear r 99.8 6.4E-19 2.2E-23 125.2 13.5 82 16-105 5-87 (103)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.9E-19 6.4E-24 134.3 11.0 84 15-98 56-140 (140)
81 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.3E-24 129.2 10.1 79 18-102 12-93 (105)
82 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-20 7.6E-25 125.0 5.3 75 24-98 1-75 (75)
83 2db1_A Heterogeneous nuclear r 99.8 9E-20 3.1E-24 133.1 9.0 84 17-101 12-98 (118)
84 2dgv_A HnRNP M, heterogeneous 99.8 3.3E-19 1.1E-23 123.9 11.2 81 18-100 4-85 (92)
85 2dnn_A RNA-binding protein 12; 99.8 7.4E-20 2.5E-24 132.0 8.0 81 18-100 12-92 (109)
86 3pgw_S U1-70K; protein-RNA com 99.8 5.6E-19 1.9E-23 155.5 15.1 86 18-103 98-184 (437)
87 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-19 9.7E-24 136.2 11.5 85 17-101 65-150 (158)
88 1x4c_A Splicing factor, argini 99.8 8.4E-19 2.9E-23 125.8 13.3 77 18-101 11-93 (108)
89 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.7E-19 1.6E-23 136.4 12.4 88 16-103 66-154 (165)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.1E-20 2.1E-24 123.3 6.4 76 23-98 1-76 (77)
91 2xs2_A Deleted in azoospermia- 99.8 1.2E-19 4.2E-24 128.5 8.1 85 17-103 4-88 (102)
92 2lea_A Serine/arginine-rich sp 99.8 8.7E-20 3E-24 136.3 7.7 87 15-101 40-127 (135)
93 2fc8_A NCL protein; structure 99.8 6E-19 2E-23 124.9 11.6 83 16-101 9-92 (102)
94 2cq1_A PTB-like protein L; RRM 99.8 9.6E-19 3.3E-23 124.4 12.4 81 16-102 9-92 (101)
95 2fc9_A NCL protein; structure 99.8 5.9E-19 2E-23 124.8 11.2 82 16-101 9-91 (101)
96 2cpi_A CCR4-NOT transcription 99.8 4.1E-19 1.4E-23 128.1 10.6 86 16-101 9-101 (111)
97 2kt5_A RNA and export factor-b 99.8 6.6E-19 2.3E-23 129.2 11.7 84 17-101 30-114 (124)
98 2hgl_A HNRPF protein, heteroge 99.8 1.4E-19 4.7E-24 135.5 8.0 84 17-101 39-125 (136)
99 2jvo_A Nucleolar protein 3; nu 99.8 4.3E-19 1.5E-23 127.6 10.1 85 10-102 19-104 (108)
100 1x4d_A Matrin 3; structural ge 99.8 4E-19 1.4E-23 126.6 9.8 77 18-100 11-91 (102)
101 1x4e_A RNA binding motif, sing 99.8 5.2E-20 1.8E-24 126.2 4.8 79 20-98 3-82 (85)
102 1wel_A RNA-binding protein 12; 99.8 8.8E-20 3E-24 134.1 6.0 84 18-101 21-104 (124)
103 2hgn_A Heterogeneous nuclear r 99.8 3.9E-20 1.3E-24 139.0 4.1 81 18-100 42-122 (139)
104 2ki2_A SS-DNA binding protein 99.8 6.2E-20 2.1E-24 127.1 4.7 80 22-102 1-81 (90)
105 1x5o_A RNA binding motif, sing 99.8 9.8E-19 3.3E-23 126.3 11.2 82 17-99 20-110 (114)
106 2hgm_A HNRPF protein, heteroge 99.8 1.9E-19 6.5E-24 133.0 7.4 81 18-100 38-120 (126)
107 1wex_A Hypothetical protein (r 99.8 1.1E-18 3.8E-23 124.7 11.1 80 17-102 10-92 (104)
108 2nlw_A Eukaryotic translation 99.8 6.9E-19 2.4E-23 125.6 10.0 83 16-100 9-99 (105)
109 1fj7_A Nucleolin RBD1, protein 99.8 4.6E-20 1.6E-24 130.5 3.5 83 18-101 13-95 (101)
110 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.5E-23 120.1 11.3 76 18-101 4-80 (90)
111 2e5g_A U6 snRNA-specific termi 99.8 1.8E-18 6.2E-23 120.8 11.5 78 19-101 5-82 (94)
112 2dgt_A RNA-binding protein 30; 99.8 2.9E-18 9.8E-23 119.3 12.4 79 15-101 3-82 (92)
113 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-19 3.8E-24 130.2 5.2 85 16-101 5-92 (107)
114 1x4g_A Nucleolysin TIAR; struc 99.8 2.3E-18 7.8E-23 123.5 11.7 79 18-102 21-100 (109)
115 2cpx_A Hypothetical protein FL 99.8 2.6E-19 8.8E-24 129.5 6.7 86 17-102 20-106 (115)
116 2ytc_A PRE-mRNA-splicing facto 99.8 2.2E-18 7.4E-23 117.9 10.9 78 15-98 5-84 (85)
117 1l3k_A Heterogeneous nuclear r 99.8 1.7E-18 5.7E-23 135.4 11.7 86 19-104 101-186 (196)
118 3r27_A HnRNP L, heterogeneous 99.8 1.5E-18 5.2E-23 122.9 10.3 80 16-101 15-97 (100)
119 2lcw_A RNA-binding protein FUS 99.6 1.7E-20 6E-25 136.1 0.0 84 18-101 3-95 (116)
120 2ad9_A Polypyrimidine tract-bi 99.8 2.2E-18 7.5E-23 125.9 11.2 81 17-103 26-109 (119)
121 2dha_A FLJ20171 protein; RRM d 99.8 3.5E-19 1.2E-23 131.0 6.8 81 19-100 20-104 (123)
122 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-18 4.6E-23 119.8 8.9 73 21-99 6-79 (89)
123 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.6E-23 122.9 9.1 75 23-102 1-76 (101)
124 1l3k_A Heterogeneous nuclear r 99.8 2.9E-18 9.8E-23 134.0 11.8 87 15-101 6-92 (196)
125 2cpj_A Non-POU domain-containi 99.8 3E-18 1E-22 120.7 10.6 78 17-100 10-88 (99)
126 2la4_A Nuclear and cytoplasmic 99.8 1E-18 3.4E-23 123.6 8.1 77 18-100 23-100 (101)
127 4f02_A Polyadenylate-binding p 99.8 3.5E-18 1.2E-22 136.4 12.2 81 20-100 13-94 (213)
128 2dnp_A RNA-binding protein 14; 99.8 5.6E-18 1.9E-22 117.3 11.7 77 17-101 4-81 (90)
129 1why_A Hypothetical protein ri 99.8 3E-18 1E-22 120.3 10.3 78 18-101 13-93 (97)
130 1x4f_A Matrin 3; structural ge 99.8 2.2E-18 7.5E-23 124.6 9.4 78 17-100 20-101 (112)
131 2a3j_A U1 small nuclear ribonu 99.8 2.9E-18 9.8E-23 126.8 10.2 83 17-102 24-111 (127)
132 2xnq_A Nuclear polyadenylated 99.8 6.9E-18 2.4E-22 118.8 11.5 80 13-100 13-94 (97)
133 2cqh_A IGF-II mRNA-binding pro 99.8 2.6E-18 8.8E-23 119.7 9.1 77 18-101 4-83 (93)
134 2krb_A Eukaryotic translation 99.8 8.8E-19 3E-23 119.1 6.5 72 22-95 1-80 (81)
135 1wf1_A RNA-binding protein RAL 99.8 7.3E-18 2.5E-22 121.1 11.7 75 18-100 23-99 (110)
136 2jvr_A Nucleolar protein 3; RN 99.8 2E-18 6.7E-23 124.8 8.5 76 20-99 26-103 (111)
137 2e5j_A Methenyltetrahydrofolat 99.8 4.4E-18 1.5E-22 119.5 9.4 80 17-101 14-94 (97)
138 2kvi_A Nuclear polyadenylated 99.8 2.6E-18 8.8E-23 120.6 8.2 76 18-101 6-83 (96)
139 3beg_B Splicing factor, argini 99.7 2.7E-18 9.3E-23 124.6 8.2 73 19-98 13-91 (115)
140 1nu4_A U1A RNA binding domain; 99.7 4E-18 1.4E-22 119.4 8.4 81 18-101 4-89 (97)
141 1fjc_A Nucleolin RBD2, protein 99.7 3.4E-18 1.2E-22 119.6 7.9 81 16-101 10-91 (96)
142 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-17 9.7E-22 115.7 12.6 77 17-101 10-89 (99)
143 2f3j_A RNA and export factor b 99.7 6.8E-18 2.3E-22 131.6 9.9 83 18-101 84-167 (177)
144 3lqv_A PRE-mRNA branch site pr 99.7 8.5E-18 2.9E-22 121.5 9.5 79 20-101 6-85 (115)
145 3d2w_A TAR DNA-binding protein 99.7 8.1E-18 2.8E-22 116.7 8.3 80 17-102 6-85 (89)
146 3md3_A Nuclear and cytoplasmic 99.7 4.1E-17 1.4E-21 123.8 13.0 83 17-99 82-165 (166)
147 2j8a_A Histone-lysine N-methyl 99.7 8.9E-18 3E-22 123.3 8.7 77 23-99 3-94 (136)
148 1fxl_A Paraneoplastic encephal 99.7 3.9E-17 1.3E-21 124.0 12.6 80 22-101 2-82 (167)
149 2yh0_A Splicing factor U2AF 65 99.7 3.6E-17 1.2E-21 127.9 12.8 84 19-102 111-195 (198)
150 1whx_A Hypothetical protein ri 99.7 8.9E-18 3.1E-22 121.1 8.3 77 19-101 7-84 (111)
151 2i2y_A Fusion protein consists 99.7 1.3E-17 4.4E-22 126.2 9.5 81 16-101 67-148 (150)
152 1sjr_A Polypyrimidine tract-bi 99.7 3.2E-17 1.1E-21 125.7 11.7 81 17-101 41-124 (164)
153 1b7f_A Protein (SXL-lethal pro 99.7 3.2E-17 1.1E-21 124.8 11.5 81 21-101 2-83 (168)
154 1x5p_A Negative elongation fac 99.7 7.3E-17 2.5E-21 113.2 12.4 77 17-101 10-87 (97)
155 1wf0_A TDP-43, TAR DNA-binding 99.7 7.7E-18 2.6E-22 116.1 6.9 76 20-101 3-78 (88)
156 2qfj_A FBP-interacting repress 99.7 4.5E-17 1.5E-21 129.0 12.3 82 20-101 123-205 (216)
157 2cjk_A Nuclear polyadenylated 99.7 7.4E-18 2.5E-22 128.4 7.3 81 21-101 86-166 (167)
158 2e44_A Insulin-like growth fac 99.7 2.3E-17 7.8E-22 115.4 8.4 80 18-101 11-92 (96)
159 2g4b_A Splicing factor U2AF 65 99.7 7E-17 2.4E-21 123.6 11.9 79 20-98 92-171 (172)
160 3egn_A RNA-binding protein 40; 99.7 7.3E-18 2.5E-22 126.5 6.1 82 18-102 41-131 (143)
161 2dnl_A Cytoplasmic polyadenyla 99.7 2.3E-17 7.7E-22 119.4 8.4 79 19-99 5-86 (114)
162 1wg1_A KIAA1579 protein, homol 99.7 2.9E-17 9.9E-22 113.4 8.5 74 20-100 3-77 (88)
163 2cq2_A Hypothetical protein LO 99.7 5.1E-17 1.7E-21 117.7 9.9 77 17-99 20-104 (114)
164 3zzy_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 117.9 12.4 82 15-101 21-106 (130)
165 2hzc_A Splicing factor U2AF 65 99.7 6.1E-17 2.1E-21 111.0 8.7 71 20-96 4-85 (87)
166 4f02_A Polyadenylate-binding p 99.7 5.7E-17 2E-21 129.3 9.7 80 21-102 102-182 (213)
167 2voo_A Lupus LA protein; RNA-b 99.7 1.7E-16 5.7E-21 125.3 11.8 79 21-100 108-186 (193)
168 2cjk_A Nuclear polyadenylated 99.7 5.9E-17 2E-21 123.4 8.8 79 21-100 2-80 (167)
169 1b7f_A Protein (SXL-lethal pro 99.7 3E-16 1E-20 119.4 11.8 81 18-98 85-168 (168)
170 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.6E-21 126.3 9.7 81 20-100 26-107 (216)
171 3md3_A Nuclear and cytoplasmic 99.7 3.1E-16 1E-20 118.9 11.2 77 23-100 1-78 (166)
172 1fxl_A Paraneoplastic encephal 99.7 4.6E-16 1.6E-20 118.0 10.9 80 19-98 85-167 (167)
173 2e5i_A Heterogeneous nuclear r 99.7 5.9E-16 2E-20 113.8 10.8 75 21-101 24-102 (124)
174 2bz2_A Negative elongation fac 99.7 2.9E-16 1E-20 115.0 9.1 77 17-101 34-111 (121)
175 2diu_A KIAA0430 protein; struc 99.7 7.2E-16 2.4E-20 107.2 10.3 73 20-102 6-85 (96)
176 3tyt_A Heterogeneous nuclear r 99.7 4.7E-16 1.6E-20 123.8 10.6 75 21-100 3-79 (205)
177 3nmr_A Cugbp ELAV-like family 99.7 6.7E-16 2.3E-20 118.1 10.5 80 21-100 2-87 (175)
178 3nmr_A Cugbp ELAV-like family 99.6 9.8E-16 3.4E-20 117.2 10.4 79 19-98 92-174 (175)
179 2pe8_A Splicing factor 45; RRM 99.6 2.2E-15 7.4E-20 107.7 11.4 81 20-100 6-93 (105)
180 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-15 4.5E-20 125.8 11.7 83 17-102 4-91 (282)
181 1fje_B Nucleolin RBD12, protei 99.6 1.2E-15 4.2E-20 117.1 9.5 79 18-101 95-174 (175)
182 3u1l_A PRE-mRNA-splicing facto 99.6 8.6E-16 2.9E-20 124.8 8.7 79 18-102 130-230 (240)
183 2ghp_A U4/U6 snRNA-associated 99.6 1.3E-15 4.4E-20 126.5 9.6 84 18-101 206-291 (292)
184 1fje_B Nucleolin RBD12, protei 99.6 2E-16 6.8E-21 121.6 3.7 84 17-101 8-91 (175)
185 3pgw_A U1-A; protein-RNA compl 99.6 5.3E-15 1.8E-19 122.1 11.9 78 17-99 202-281 (282)
186 3smz_A Protein raver-1, ribonu 99.6 9.6E-15 3.3E-19 120.7 13.5 82 20-101 93-175 (284)
187 3smz_A Protein raver-1, ribonu 99.6 4.9E-15 1.7E-19 122.5 11.1 86 17-103 179-266 (284)
188 2adc_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 120.2 9.9 79 18-101 30-110 (229)
189 2dit_A HIV TAT specific factor 99.6 4.1E-14 1.4E-18 101.9 12.8 82 17-102 10-103 (112)
190 2ghp_A U4/U6 snRNA-associated 99.6 9.7E-15 3.3E-19 121.1 10.1 83 15-99 34-116 (292)
191 1qm9_A Polypyrimidine tract-bi 99.6 8.6E-15 2.9E-19 114.8 8.0 76 21-101 2-79 (198)
192 2g4b_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 109.6 9.5 73 21-99 3-86 (172)
193 3tyt_A Heterogeneous nuclear r 99.5 1.1E-14 3.7E-19 115.9 7.9 77 20-98 121-204 (205)
194 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 4.2E-18 97.7 12.5 77 19-101 7-90 (100)
195 3sde_A Paraspeckle component 1 99.5 3.1E-14 1.1E-18 116.9 9.8 77 17-99 17-94 (261)
196 1jmt_A Splicing factor U2AF 35 99.5 8.8E-15 3E-19 104.3 5.6 71 27-98 20-103 (104)
197 2yh0_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 110.4 9.3 74 21-100 3-87 (198)
198 1qm9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 111.1 9.1 77 20-101 118-197 (198)
199 3v4m_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 100.2 9.2 82 19-100 2-96 (105)
200 2adc_A Polypyrimidine tract-bi 99.5 4.9E-14 1.7E-18 113.4 9.8 77 20-101 149-228 (229)
201 3sde_A Paraspeckle component 1 99.5 9.5E-14 3.2E-18 113.9 10.7 80 21-101 95-179 (261)
202 3ue2_A Poly(U)-binding-splicin 99.5 2.5E-13 8.6E-18 98.9 9.9 80 21-100 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 5.3E-13 1.8E-17 113.7 9.0 76 17-98 13-96 (345)
204 2dnr_A Synaptojanin-1; RRM dom 99.3 2.3E-11 7.8E-16 83.7 8.9 74 19-100 4-85 (91)
205 3s6e_A RNA-binding protein 39; 99.3 9E-12 3.1E-16 90.1 7.3 76 21-100 6-92 (114)
206 1owx_A Lupus LA protein, SS-B, 99.2 7.9E-11 2.7E-15 85.7 8.7 77 17-99 13-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.4E-10 4.7E-15 80.2 7.1 76 16-99 9-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.4E-09 8.4E-14 85.4 8.6 68 33-100 140-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 9.7E-07 3.3E-11 62.4 8.5 73 20-98 19-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 1.7E-05 5.7E-10 55.5 10.5 73 18-98 4-81 (104)
211 1wey_A Calcipressin 1; structu 97.6 0.00023 7.9E-09 49.8 7.0 74 20-99 3-82 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.6 0.00053 1.8E-08 49.2 9.1 74 18-98 20-94 (119)
213 1uw4_A UPF3X; nonsense mediate 97.5 0.00087 3E-08 45.9 8.6 67 23-89 2-71 (91)
214 1whv_A Poly(A)-specific ribonu 97.5 0.00045 1.5E-08 47.7 7.0 53 21-82 15-67 (100)
215 3ctr_A Poly(A)-specific ribonu 97.1 0.0009 3.1E-08 46.3 5.3 50 24-82 8-57 (101)
216 3p3d_A Nucleoporin 53; structu 96.6 0.004 1.4E-07 45.3 5.6 76 23-99 8-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.0012 4E-08 58.1 3.3 56 22-83 53-108 (464)
218 2l08_A Regulator of nonsense t 96.1 0.0063 2.1E-07 42.0 4.2 68 21-88 8-78 (97)
219 2kn4_A Immunoglobulin G-bindin 95.2 0.023 7.8E-07 41.9 4.6 31 51-83 2-32 (158)
220 2i2y_A Fusion protein consists 94.0 0.026 8.8E-07 41.4 2.4 39 61-100 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 88.6 1.3 4.6E-05 39.1 7.7 53 21-82 439-491 (507)
222 4f25_A Polyadenylate-binding p 69.3 0.97 3.3E-05 31.2 0.0 21 18-38 93-113 (115)
223 2g0c_A ATP-dependent RNA helic 63.2 25 0.00084 22.0 6.2 66 24-98 2-74 (76)
224 4e8u_A Putative uncharacterize 53.0 54 0.0018 24.5 7.1 47 34-83 33-82 (172)
225 2cu1_A Mitogen-activated prote 47.5 30 0.001 23.5 4.4 62 30-99 24-86 (103)
226 3fry_A Probable copper-exporti 43.4 52 0.0018 19.7 6.3 58 22-86 6-63 (73)
227 2i9x_A Putative septation prot 33.1 60 0.0021 21.4 4.1 26 48-73 5-30 (87)
228 2ia9_A Putative septation prot 28.2 79 0.0027 21.4 4.1 26 48-73 5-30 (100)
229 2i9z_A Putative septation prot 27.0 86 0.0029 21.4 4.1 26 48-73 5-30 (105)
230 3ts2_A Protein LIN-28 homolog 25.6 11 0.00038 27.4 -0.6 28 37-72 2-29 (148)
231 4bby_A Alkyldihydroxyacetoneph 24.9 73 0.0025 28.8 4.5 53 29-82 350-406 (658)
232 3bgu_A Ferredoxin-like protein 21.9 1.9E+02 0.0065 19.5 5.5 60 21-81 21-90 (116)
233 1i4w_A Mitochondrial replicati 20.6 77 0.0026 26.4 3.5 22 24-45 144-165 (353)
234 2e5p_A Protein PHF1, PHD finge 20.3 50 0.0017 20.7 1.7 12 64-75 37-48 (68)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=6.3e-23 Score=156.57 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++...
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99653
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=142.65 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++|+++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++||+ +|+..|+|+.|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346799999999999999999999999999999999999999999999999999999999996 7999999999999999
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 3
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=137.72 Aligned_cols=86 Identities=27% Similarity=0.495 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
...+.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 84 ~~a~~~ 89 (99)
T 2dgs_A 84 KRAEPR 89 (99)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999644
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=8.8e-22 Score=142.24 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
..+.++|||+||+++++|++|+++|++||+|++|.|++|+.|++++|||||+|++.++|++||+ +|+..|+|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 5
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=1.8e-21 Score=141.13 Aligned_cols=90 Identities=26% Similarity=0.310 Sum_probs=81.9
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
...+..+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+
T Consensus 16 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 16 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp BSCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345566678999999999999999999999999999999999999999999999999999999999995 699999999
Q ss_pred EeEEEEcccCC
Q 028475 92 RANCNLACLGV 102 (208)
Q Consensus 92 ~i~v~~a~~~~ 102 (208)
.|+|+++..+.
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999996543
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=2.5e-21 Score=144.80 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=80.1
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+...++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999544
No 7
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=138.59 Aligned_cols=87 Identities=59% Similarity=0.990 Sum_probs=79.8
Q ss_pred CCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh-CCCeeCCeE
Q 028475 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD-AAPVIDGRR 92 (208)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 92 (208)
.....+...++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+. ++ .|+|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3456677889999999999999999999999999999999999999999999999999999999999975 65 999999
Q ss_pred eEEEEcccC
Q 028475 93 ANCNLACLG 101 (208)
Q Consensus 93 i~v~~a~~~ 101 (208)
|+|+++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999543
No 8
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.86 E-value=3.1e-22 Score=162.28 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
..++|||+||++++|+++|+++|++|| .|++|+|++|+.|++++|||||+|++.++|++||+ +++++|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 99999999999999999999999999999999997 799999999999999
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.3e-21 Score=132.76 Aligned_cols=83 Identities=34% Similarity=0.701 Sum_probs=77.4
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
+..+...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+++++.|+|+.|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EEc
Q 028475 96 NLA 98 (208)
Q Consensus 96 ~~a 98 (208)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.4e-20 Score=136.35 Aligned_cols=90 Identities=34% Similarity=0.451 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
........++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44556788999999999999999999999999999999999999899999999999999999999996 79999999999
Q ss_pred EEEEcccCCCC
Q 028475 94 NCNLACLGVQR 104 (208)
Q Consensus 94 ~v~~a~~~~~~ 104 (208)
+|+++..+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999655443
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.7e-21 Score=134.31 Aligned_cols=85 Identities=31% Similarity=0.486 Sum_probs=79.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999995 79999999999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
++..+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 996543
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.1e-21 Score=135.24 Aligned_cols=87 Identities=25% Similarity=0.338 Sum_probs=80.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
...+....++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 88 ~v~~a~~~ 95 (103)
T 2cq0_A 88 NVEWAKPS 95 (103)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 99999544
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-22 Score=137.58 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h-CCCeeCCeEeEEEEc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRRANCNLA 98 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~g~~i~v~~a 98 (208)
+.+|||+|||+++||++|+++|++|| +|++|+|++|+.|++++|||||+|.+.++|++||+ + ++..++|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999997 4 456799999999999
Q ss_pred ccCCC
Q 028475 99 CLGVQ 103 (208)
Q Consensus 99 ~~~~~ 103 (208)
.++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 65443
No 14
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=3e-21 Score=140.48 Aligned_cols=84 Identities=27% Similarity=0.387 Sum_probs=78.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+..+...++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEc
Q 028475 94 NCNLA 98 (208)
Q Consensus 94 ~v~~a 98 (208)
+|+++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99987
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=134.08 Aligned_cols=88 Identities=35% Similarity=0.607 Sum_probs=79.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....+...++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++.|+|+.|+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEE
Confidence 34556678899999999999999999999999999999999999999999999999999999999998 47789999999
Q ss_pred EEEcccCCC
Q 028475 95 CNLACLGVQ 103 (208)
Q Consensus 95 v~~a~~~~~ 103 (208)
|+++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999965433
No 16
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1e-20 Score=134.54 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
.+..+...++|||+|||+++++++|+++|++|| |.+|.|+.++.+++++|||||+|++.++|++||++++..|+|+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 86 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLR 86 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEE
Confidence 345566789999999999999999999999997 9999999999999999999999999999999997799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999543
No 17
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=136.61 Aligned_cols=87 Identities=34% Similarity=0.721 Sum_probs=80.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....+...++|||+|||+++++++|+++|++||+|++|.|+.++.+++++|||||+|++.++|++||+.++..|+|+.|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999998799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 89 V~~a~~~ 95 (105)
T 2dh8_A 89 PKPCTPR 95 (105)
T ss_dssp CCCSCCS
T ss_pred EEEccCC
Confidence 9988544
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=137.83 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC--EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC----eeC
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP----VID 89 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~----~i~ 89 (208)
..+..+.+|||+|||+++|+++|+++|++||. |.+|++++|+.|+++||||||+|.+.++|++||+ +|+. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 35667889999999999999999999999995 6799999999999999999999999999999996 5665 599
Q ss_pred CeEeEEEEcc
Q 028475 90 GRRANCNLAC 99 (208)
Q Consensus 90 g~~i~v~~a~ 99 (208)
|+.|.|++|+
T Consensus 84 Gr~i~V~~Ak 93 (95)
T 2lkz_A 84 GKTIGVDFAK 93 (95)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcc
Confidence 9999999984
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=135.64 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=80.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+......++|||+|||+++++++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++...
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dnm_A 86 RVQVARYG 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEECCcC
Confidence 99999543
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.9e-21 Score=135.08 Aligned_cols=87 Identities=26% Similarity=0.334 Sum_probs=80.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
........++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 44566778999999999999999999999999999999999999899999999999999999999997 69999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999544
No 21
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=141.66 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
..+...++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 44456789999999999999999999999999999999999999999999999999999999999779999999999999
Q ss_pred EcccCCC
Q 028475 97 LACLGVQ 103 (208)
Q Consensus 97 ~a~~~~~ 103 (208)
++..+..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9976543
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=131.42 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 23
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=134.86 Aligned_cols=87 Identities=24% Similarity=0.372 Sum_probs=79.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhc-CCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe-eCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV-IDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~-i~g~~i 93 (208)
......++|||+|||+++|+++|+++|++ ||.|.+|.|+.++ +++++|||||+|.+.++|++||+ +++.. |+|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45567899999999999999999999999 9999999999998 89999999999999999999997 79999 999999
Q ss_pred EEEEcccCCCC
Q 028475 94 NCNLACLGVQR 104 (208)
Q Consensus 94 ~v~~a~~~~~~ 104 (208)
+|+++..+..+
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99998654433
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.2e-21 Score=132.78 Aligned_cols=83 Identities=27% Similarity=0.413 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEE-EEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
....++|||+|||+++++++|+++|++||.|.++ +|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3467899999999999999999999999999999 999998899999999999999999999998 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++..+
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 99543
No 25
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=134.54 Aligned_cols=85 Identities=16% Similarity=0.401 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCC-CCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
+..+...++|||+|||+++++++|+++|++|| |.+|.|+.++.+ ++++|||||+|.+.++|++||++++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34556779999999999999999999999999 999999999988 9999999999999999999997799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999544
No 26
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=7e-21 Score=137.08 Aligned_cols=88 Identities=34% Similarity=0.632 Sum_probs=76.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....+...++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 33455678999999999999999999999999999999999999999999999999999999999998767899999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|+++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99996544
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.6e-20 Score=127.98 Aligned_cols=80 Identities=33% Similarity=0.471 Sum_probs=75.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
+.+|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|+|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999997 799999999999999965
Q ss_pred C
Q 028475 101 G 101 (208)
Q Consensus 101 ~ 101 (208)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=135.19 Aligned_cols=88 Identities=27% Similarity=0.417 Sum_probs=80.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC------CCee
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA------APVI 88 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~------~~~i 88 (208)
+......++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ ++ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4455678899999999999999999999999999999999999999999999999999999999996 68 8999
Q ss_pred CCeEeEEEEcccCCC
Q 028475 89 DGRRANCNLACLGVQ 103 (208)
Q Consensus 89 ~g~~i~v~~a~~~~~ 103 (208)
+|+.|+|+++..+..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999965433
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8e-21 Score=134.64 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=79.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
.....+.++|||+|||+++++++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999996 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 86 V~~a~~~ 92 (102)
T 2cqb_A 86 VNLAKPM 92 (102)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9999654
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=133.84 Aligned_cols=85 Identities=35% Similarity=0.621 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
....+.++|||+|||+++++++|+++|++||+|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445678899999999999999999999999999999999999999999999999999999999995 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 87 ~~a~~~ 92 (102)
T 1x5s_A 87 DQAGKS 92 (102)
T ss_dssp EEEECC
T ss_pred EECCCC
Confidence 999644
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=129.10 Aligned_cols=82 Identities=37% Similarity=0.493 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||.++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ +++..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456799999999999999999999999999999999999899999999999999999999997 6999999999999999
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 32
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-21 Score=139.15 Aligned_cols=84 Identities=36% Similarity=0.655 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
.+...++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|+|++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+..+
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8544
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.1e-20 Score=134.78 Aligned_cols=87 Identities=29% Similarity=0.421 Sum_probs=80.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee---CC
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI---DG 90 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i---~g 90 (208)
....+...++|||+|||.++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..+ .+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 44566778999999999999999999999999999999999999999999999999999999999996 799887 89
Q ss_pred eEeEEEEcccC
Q 028475 91 RRANCNLACLG 101 (208)
Q Consensus 91 ~~i~v~~a~~~ 101 (208)
+.|+|+++..+
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999999543
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=133.79 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=80.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-h-CCCeeCCe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGR 91 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~tg~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~g~ 91 (208)
.+..+...++|||+|||+++++++|+++|++||.|++|.|+.+ +.+++++|||||+|.+.++|++||+ + ++..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4456678899999999999999999999999999999999999 7889999999999999999999996 7 89999999
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 9999999654
No 35
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=9.6e-21 Score=139.30 Aligned_cols=88 Identities=22% Similarity=0.267 Sum_probs=81.0
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4455668899999999999999999999999999999999999999999999999999999999996 799999999999
Q ss_pred EEEcccCCC
Q 028475 95 CNLACLGVQ 103 (208)
Q Consensus 95 v~~a~~~~~ 103 (208)
|+++..+..
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999965543
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=135.49 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+....++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999996 69999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++..+
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99643
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.3e-20 Score=132.09 Aligned_cols=86 Identities=26% Similarity=0.273 Sum_probs=78.5
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC---e
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG---R 91 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g---~ 91 (208)
...+...++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..+.+ +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3455678999999999999999999999999999999999998 79999999999999999999996 79999988 9
Q ss_pred EeEEEEcccCC
Q 028475 92 RANCNLACLGV 102 (208)
Q Consensus 92 ~i~v~~a~~~~ 102 (208)
.|+|+++..+.
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999996544
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=131.48 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCC---CCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
..+.++|||+|||+++++++|+++|++||+|++|.|+.++. |++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35678999999999999999999999999999999999876 66899999999999999999997 699999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999544
No 39
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=130.99 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=78.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
........++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455678899999999999999999999999999999999999999999999999999999999996 79999999999
Q ss_pred EEEEcc
Q 028475 94 NCNLAC 99 (208)
Q Consensus 94 ~v~~a~ 99 (208)
+|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=2.1e-20 Score=127.98 Aligned_cols=80 Identities=33% Similarity=0.459 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
+.+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4578899999999999999999999999999999999999899999999999999999999995 799999999999998
Q ss_pred c
Q 028475 98 A 98 (208)
Q Consensus 98 a 98 (208)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 7
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=132.90 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=80.4
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+......++|||+|||+++++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 33445677899999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 99999654
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=134.17 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEe--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP 86 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~ 86 (208)
...+...++|||+|||+++|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+ +++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45667889999999999999999999999999999 69999999999999999999999999999997 7999
Q ss_pred eeCCeEeEEEEcccC
Q 028475 87 VIDGRRANCNLACLG 101 (208)
Q Consensus 87 ~i~g~~i~v~~a~~~ 101 (208)
.|+|+.|+|+++..+
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 999999999998543
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=130.41 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=78.4
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+...++|||+|||+++|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..++|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999998 89999999999999999999995 699999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999544
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=129.98 Aligned_cols=85 Identities=24% Similarity=0.374 Sum_probs=79.2
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
......+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred EEEEcc
Q 028475 94 NCNLAC 99 (208)
Q Consensus 94 ~v~~a~ 99 (208)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999884
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=130.40 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=77.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
.......++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455678899999999999999999999999999999999997 59999999999999999999997 799999999999
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
|+++..
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 999854
No 46
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-21 Score=136.06 Aligned_cols=88 Identities=17% Similarity=0.382 Sum_probs=74.2
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecC-CCCCcceEEEEEECCHHHHHHHHHhCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~ 91 (208)
...+......++|||+|||+++++++|+++|++|| |.+|+|+.++ .+++++|||||+|.+.++|++||++++..|+|+
T Consensus 10 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 10 HRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp ----------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 34445567789999999999999999999999999 9999999998 689999999999999999999998899999999
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998543
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.7e-20 Score=129.82 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=77.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
....+...++|||+|||+++++++|+++|++||.|++|.|+.++.+ ++|||||+|.+.++|++||+ +++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456677899999999999999999999999999999999998643 68999999999999999997 79999999999
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
+|+++..+.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999996543
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=131.01 Aligned_cols=86 Identities=30% Similarity=0.447 Sum_probs=78.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
....+...++|||+|||+++|+++|+++|++||.|.+|.|+.+ +++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 4455668899999999999999999999999999999999998 79999999999999999999997 79999999999
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
+|+++..+.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 999996543
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=3.1e-20 Score=134.84 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|++.++|++||+ +++..|+|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 4579999999999999999996 79999999999999986
Q ss_pred cCC
Q 028475 100 LGV 102 (208)
Q Consensus 100 ~~~ 102 (208)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.9e-21 Score=133.56 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=71.2
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
.+|||+|||+++|+++|+++|++|| .|.+++|+.++.+++++|||||+|.+.++|++||+ +++.+++|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999996 79999999999999886
Q ss_pred cCC
Q 028475 100 LGV 102 (208)
Q Consensus 100 ~~~ 102 (208)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=129.38 Aligned_cols=84 Identities=26% Similarity=0.400 Sum_probs=76.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+..+...++|||+|||+++++++|+++|++||+|++|.|+.++. ++++|||||+|.+.++|++||+ +++..++|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345566789999999999999999999999999999999999986 8999999999999999999997 79999999999
Q ss_pred EEEEcc
Q 028475 94 NCNLAC 99 (208)
Q Consensus 94 ~v~~a~ 99 (208)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999884
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=4.1e-20 Score=132.78 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=81.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
+|+++..+.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999996543
No 53
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=3.9e-20 Score=127.67 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
..++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||++++..++|+.|+|++++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45799999999999999999999999999999999999999999999999999999999997799999999999999853
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=130.30 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEe-EEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE--
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR-- 92 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~-- 92 (208)
......++|||+|||+++++++|+++|++||+|. +|+|+.++.+++++|||||+|.+.++|++||+ +++..++|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3455789999999999999999999999999999 99999999999999999999999999999998 7999999999
Q ss_pred --eEEEEcc
Q 028475 93 --ANCNLAC 99 (208)
Q Consensus 93 --i~v~~a~ 99 (208)
|+|+++.
T Consensus 84 ~~l~v~~a~ 92 (99)
T 2div_A 84 KRFKLNYAT 92 (99)
T ss_dssp EECCEEETT
T ss_pred eeEEEeecC
Confidence 9999884
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=133.77 Aligned_cols=89 Identities=31% Similarity=0.486 Sum_probs=81.6
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
.+.+..+...++|||+|||..+++++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345566778999999999999999999999999999999999999999999999999999999999996 799999999
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999998544
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=5e-20 Score=129.27 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
+.++|||+|||.++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999996 79999999999999996
Q ss_pred cCC
Q 028475 100 LGV 102 (208)
Q Consensus 100 ~~~ 102 (208)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=130.17 Aligned_cols=84 Identities=27% Similarity=0.408 Sum_probs=78.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA 85 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~ 85 (208)
.+......++|||+|||+++++++|+++|++||.|.+ ++|+.++.+++++|||||+|.+.++|++||+ +++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445567899999999999999999999999999999 9999999999999999999999999999996 799
Q ss_pred CeeCCeEeEEEEc
Q 028475 86 PVIDGRRANCNLA 98 (208)
Q Consensus 86 ~~i~g~~i~v~~a 98 (208)
..++|+.|+|++|
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 9999999999987
No 58
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=132.59 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
.......++|||+|||+++||++|+++|++||.+ +|+|+.++ +++++|||||+|+++++|++||++++..|+++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 3455677899999999999999999999999954 99999998 899999999999999999999988999999999999
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
..+.
T Consensus 87 ~~~~ 90 (102)
T 1wez_A 87 FLNS 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9884
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=128.02 Aligned_cols=86 Identities=29% Similarity=0.488 Sum_probs=77.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
....+...++|||+|||+++|+++|+++|++||.|.+|.|+.++. .++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567789999999999999999999999999999999999864 389999999999999999997 79999999999
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
+|+++..+.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999996543
No 60
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=134.14 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
.+...++|||+|||+++|+++|+++|++||+|.+|.|+.++. ++++|||||+|.++++|++||+++++.++|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999999999999999999998
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 865
No 61
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=130.09 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=75.8
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
......+...++|||+|||+++|+++|+++|++||.|++|.|..+ ++++|||||+|++.++|++||+ +++..|+|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 334556678899999999999999999999999999999999654 5579999999999999999995 799999999
Q ss_pred EeEEEEccc
Q 028475 92 RANCNLACL 100 (208)
Q Consensus 92 ~i~v~~a~~ 100 (208)
.|+|+++..
T Consensus 90 ~l~V~~a~~ 98 (109)
T 1x4a_A 90 RLRVEFPRS 98 (109)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEccc
Confidence 999999854
No 62
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=141.03 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=80.0
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE--EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC---
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP--- 86 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~--- 86 (208)
...+..+...++|||+|||+++||++|+++|++||.|.. |+|++|+.|++++|||||+|.+. +|++||+ +++.
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 344556678899999999999999999999999999976 99999999999999999999999 9999996 6998
Q ss_pred -eeCCeEeEEEEcccC
Q 028475 87 -VIDGRRANCNLACLG 101 (208)
Q Consensus 87 -~i~g~~i~v~~a~~~ 101 (208)
.|+|+.|+|+++..+
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999999654
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=6.6e-21 Score=135.12 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCC------CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC-
Q 028475 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG- 90 (208)
Q Consensus 19 ~~~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g- 90 (208)
+...++|||+|||. ++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++||+ +|+..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 99999999999999999999999999999999999999999999999996 79999999
Q ss_pred eEeEEEEcccC
Q 028475 91 RRANCNLACLG 101 (208)
Q Consensus 91 ~~i~v~~a~~~ 101 (208)
+.|+|+++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999654
No 64
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-21 Score=137.92 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCE-eEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
..+...++|||+|||+++|+++|+++|++||.| .+|+|+.++ +++++|||||+|.++++|++||++++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 345667899999999999999999999999999 899999998 899999999999999999999988999999999999
Q ss_pred EEcccCC
Q 028475 96 NLACLGV 102 (208)
Q Consensus 96 ~~a~~~~ 102 (208)
+++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9996544
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=125.85 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=77.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
.......++|||+|||+++++++|+++|++| .|.+|+|+.+ .+++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3455678899999999999999999999999 9999999999 7899999999999999999999999999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.++..+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999544
No 66
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=9.9e-21 Score=126.81 Aligned_cols=75 Identities=40% Similarity=0.738 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
+|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.++++|++|+++++..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999999999999999999865
No 67
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=140.78 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.|++++|||||+|.+.++|++||+ +++..|+|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999997 599999999999999
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 68
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=126.38 Aligned_cols=81 Identities=27% Similarity=0.419 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCC-cceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~-~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
...++|||+|||+++|+++|+++|++||.|.++.|+.++.++. ++|||||+|.+.++|++|++ +++..++|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 89999999999999999997 799999999999999
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 954
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=4.2e-20 Score=137.05 Aligned_cols=87 Identities=23% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
......+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998543
No 70
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=9.4e-20 Score=133.59 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
..++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||++++..|+|+.|+|++++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999997799999999999999853
No 71
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=129.72 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 355677899999999999999999999999999999999998999999999999999999999995 7999999999999
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
+++.
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9984
No 72
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=129.51 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+++++|||||+|+++++|++||+.++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34456789999999999999999999999999987 888888 6899999999999999999999988999999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 98853
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2e-19 Score=128.39 Aligned_cols=83 Identities=30% Similarity=0.421 Sum_probs=77.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+......++|||+|||+.+|+++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678999999999999999999999999999999999998 89999999999999999999997 799999999999
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99883
No 74
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=129.33 Aligned_cols=85 Identities=18% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEe-ecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEe
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i 93 (208)
....++|||+|||+++|+++|+++|++||. |.+|.++ .++.+++++|||||+|.+.++|++||+ ++ +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 888889999999999999999999997 55 488999999
Q ss_pred EEEEcccCCC
Q 028475 94 NCNLACLGVQ 103 (208)
Q Consensus 94 ~v~~a~~~~~ 103 (208)
+|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=126.35 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 20 TTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...++|||+|||+++++++|+ ++|++||+|.+|+|+.++.+ +|||||+|.+.++|++||+ +|+..|+|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999999765 8899999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999544
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=4.6e-20 Score=128.92 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.++++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 344556899999999999999999999999999999999999999999999999999999999997 7999999999999
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
+++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9874
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-20 Score=132.39 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.+...++|||+|||+.+++++|+++|++||.|.++.|+.++.+++++|||||+|.+.++|++||+ +++..++|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
++..+.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 996544
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=130.24 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=77.5
Q ss_pred cCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
......+...++|||+|||.++++++|+++|++||+|++|.|+.++ ++++|||||+|.+.++|++|++ +++..++|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345566788999999999999999999999999999999999885 4589999999999999999997 799999999
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999644
No 79
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=6.4e-19 Score=125.18 Aligned_cols=82 Identities=28% Similarity=0.382 Sum_probs=72.6
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+....+.++|||+|||+++|+++|+++|++||.|.+|.|+ ++||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3445677999999999999999999999999999999986 4599999999999999997 799999999999
Q ss_pred EEEcccCCCCC
Q 028475 95 CNLACLGVQRS 105 (208)
Q Consensus 95 v~~a~~~~~~~ 105 (208)
|+++..+..+.
T Consensus 77 v~~a~~~~~~~ 87 (103)
T 2dgu_A 77 IVFAKPPDQKR 87 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEcCCCcccc
Confidence 99997654433
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=134.30 Aligned_cols=84 Identities=31% Similarity=0.416 Sum_probs=77.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
........++|||+|||+++++++|+++|++||+|++++|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999996 79999999999
Q ss_pred EEEEc
Q 028475 94 NCNLA 98 (208)
Q Consensus 94 ~v~~a 98 (208)
+|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=129.17 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i~ 94 (208)
...+.++|||+|||+++||++|+++|++||+|++|.|+++ ||||||+|++.++|++||+ ++ +.+|+|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567889999999999999999999999999999999875 7899999999999999997 54 4789999999
Q ss_pred EEEcccCC
Q 028475 95 CNLACLGV 102 (208)
Q Consensus 95 v~~a~~~~ 102 (208)
|+++..+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99996543
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2.2e-20 Score=124.97 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
+|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++||+++++.++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998889999999999875
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=9e-20 Score=133.10 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i 93 (208)
......++|||+|||+++|+++|+++|+.||. |.+|+|+.++. ++++|||||+|.++++|++||+++++.|+|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEE
Confidence 44567789999999999999999999999999 89999999987 999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99988543
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.3e-19 Score=123.86 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.+...++|||+|||+++++++|+++|++||+|.+|.|+.+ +++++|||||+|.+.++|++||+ +++..++|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4557789999999999999999999999999999999985 78999999999999999999997 69999999999999
Q ss_pred Eccc
Q 028475 97 LACL 100 (208)
Q Consensus 97 ~a~~ 100 (208)
++..
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9854
No 85
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.4e-20 Score=131.95 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
.....++|||+|||+++|+++|+++|+.| .|.+|+|+.++. ++++|||||+|.++++|++||+++++.|+|+.|+|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 33456799999999999999999999999 899999999976 9999999999999999999999899999999999988
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 853
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=5.6e-19 Score=155.51 Aligned_cols=86 Identities=21% Similarity=0.446 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||+.+|+++|+++|++||.|+.|.|+.++.|++++|||||+|.+.++|++||+ +|+..|+|+.|.|+
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999995 69999999999999
Q ss_pred EcccCCC
Q 028475 97 LACLGVQ 103 (208)
Q Consensus 97 ~a~~~~~ 103 (208)
++..+..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9975443
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.8e-19 Score=136.22 Aligned_cols=85 Identities=27% Similarity=0.478 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999996 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 999653
No 88
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-19 Score=125.76 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC-----e
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG-----R 91 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g-----~ 91 (208)
.....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+ +|+.+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999876 799999999999999997 79999999 9
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 84 ~i~V~~a~~~ 93 (108)
T 1x4c_A 84 YIRVKVDGPR 93 (108)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999999653
No 89
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=4.7e-19 Score=136.39 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=79.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
+......++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445667899999999999999999999999999999999999999999999999999999999996 799999999999
Q ss_pred EEEcccCCC
Q 028475 95 CNLACLGVQ 103 (208)
Q Consensus 95 v~~a~~~~~ 103 (208)
|.++..+..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976543
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.1e-20 Score=123.33 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
++|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++|++..+..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999985339999999999886
No 91
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=1.2e-19 Score=128.54 Aligned_cols=85 Identities=29% Similarity=0.502 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
..+...++|||+|||+++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+ ++..++|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 445567899999999999999999999999999999999998 89999999999999999999999 9999999999999
Q ss_pred EcccCCC
Q 028475 97 LACLGVQ 103 (208)
Q Consensus 97 ~a~~~~~ 103 (208)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9875543
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=8.7e-20 Score=136.29 Aligned_cols=87 Identities=26% Similarity=0.439 Sum_probs=80.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
.+......++|||+|||+++|+++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678899999999999999999999999999999999999899999999999999999999996 69999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|++++..
T Consensus 120 ~V~~a~~~ 127 (135)
T 2lea_A 120 RVQMARYG 127 (135)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999543
No 93
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=124.88 Aligned_cols=83 Identities=33% Similarity=0.463 Sum_probs=74.8
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
.......++|||+|||+++|+++|+++|+.| ..|.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456678999999999999999999999977 367888898899999999999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999543
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-19 Score=124.41 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=71.9
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h--CCCeeCCeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRR 92 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~--~~~~i~g~~ 92 (208)
.....+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ||||||+|++.++|++||+ + ++.++.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 345567889999999999999999999999999999998765 7899999999999999996 3 577899999
Q ss_pred eEEEEcccCC
Q 028475 93 ANCNLACLGV 102 (208)
Q Consensus 93 i~v~~a~~~~ 102 (208)
|.|+++..+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999996543
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-19 Score=124.79 Aligned_cols=82 Identities=26% Similarity=0.339 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456678999999999999999999999999987 56666 578999999999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999543
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=128.09 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=77.1
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHH---HHHhcCCCEeEEEEeecCCCC---CcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg---~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
.......++|||+|||+++++++|+ ++|++||+|.+|.|+.++.++ +++|||||+|+++++|++||+ +|+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3455678899999999999999999 999999999999999988654 556999999999999999997 699999
Q ss_pred CCeEeEEEEcccC
Q 028475 89 DGRRANCNLACLG 101 (208)
Q Consensus 89 ~g~~i~v~~a~~~ 101 (208)
+|+.|+|+++..+
T Consensus 89 ~gr~l~V~~a~~k 101 (111)
T 2cpi_A 89 DGRTLKASLGTTK 101 (111)
T ss_dssp TTEEEEEESCCCC
T ss_pred CCEEEEEEecccc
Confidence 9999999999544
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=6.6e-19 Score=129.20 Aligned_cols=84 Identities=29% Similarity=0.398 Sum_probs=78.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345677899999999999999999999999999999999998 89999999999999999999997 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++...
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999653
No 98
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.4e-19 Score=135.49 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i 93 (208)
......++|||+|||+++|+++|+++|++||. |++|+|+.|+. ++++|||||+|+++++|++||++++..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34566789999999999999999999999999 89999999987 999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988543
No 99
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=4.3e-19 Score=127.55 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=71.0
Q ss_pred hhccCCCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 10 AAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 10 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
.+....+..+...++|||+|||+++|+++|+++|++||.|++|.++ +|||||+|.+.++|++||+ +++..+
T Consensus 19 ~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 19 SHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp ---------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3344455667788999999999999999999999999999999987 6899999999999999996 799999
Q ss_pred CCeEeEEEEcccCC
Q 028475 89 DGRRANCNLACLGV 102 (208)
Q Consensus 89 ~g~~i~v~~a~~~~ 102 (208)
+|+.|+|+++..+.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 91 ANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEECEEESCSCCC
T ss_pred CCeEEEEEEecCCC
Confidence 99999999996543
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=126.59 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEe
Q 028475 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i 93 (208)
...+.++|||+|||+ ++||++|+++|++||.|.+|.|+++ +|||||+|+++++|++||+ ++ ..+|+|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445788999999999 9999999999999999999999876 5799999999999999996 45 456999999
Q ss_pred EEEEccc
Q 028475 94 NCNLACL 100 (208)
Q Consensus 94 ~v~~a~~ 100 (208)
.|+++..
T Consensus 85 ~V~~a~~ 91 (102)
T 1x4d_A 85 RVHLSQK 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999964
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-20 Score=126.19 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++++++|+++|++||+|.++.|+.++.+++++|||||+|.+.++|++||+ +|+..++|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999997 7999999998776554
No 102
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-20 Score=134.06 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
.....++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||++++..|+|+.|+|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999999987777777789999999999999999999999999999999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 103
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=3.9e-20 Score=138.97 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
...+.++|||+|||+++||++|+++|++|| |.+|+|+.|+. ++++|||||+|+++++|++||++++..|+++.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 67999999986 9999999999999999999998899999999999988
Q ss_pred ccc
Q 028475 98 ACL 100 (208)
Q Consensus 98 a~~ 100 (208)
+..
T Consensus 120 a~~ 122 (139)
T 2hgn_A 120 NST 122 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 843
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=6.2e-20 Score=127.12 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
.++|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.+.+ |++|++ +++..++|+.|+|++|..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 368999999999999999999999999999999999999999999999999999 999997 699999999999999965
Q ss_pred CC
Q 028475 101 GV 102 (208)
Q Consensus 101 ~~ 102 (208)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 105
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.8e-19 Score=126.30 Aligned_cols=82 Identities=17% Similarity=0.386 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee-------
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI------- 88 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i------- 88 (208)
..+...++|||+|||+++|+++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+ +|+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 455678999999999999999999999999999999999998 89999999999999999999997 799988
Q ss_pred -CCeEeEEEEcc
Q 028475 89 -DGRRANCNLAC 99 (208)
Q Consensus 89 -~g~~i~v~~a~ 99 (208)
.++.|.|+++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 57779998884
No 106
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.79 E-value=1.9e-19 Score=132.97 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEe--EEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
.....++|||+|||+++||++|+++|++| .|. +|+|+.|+. ++++|||||+|+++++|++||++++..|+|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 44567899999999999999999999999 677 899999987 99999999999999999999998889999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=124.74 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=70.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i 93 (208)
....+.++|||+|||++++|++|+++|++||.|.+|.|+.+ ||||||+|+++++|++||+ ++ ...|+|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 44567789999999999999999999999999999998764 7899999999999999996 44 456999999
Q ss_pred EEEEcccCC
Q 028475 94 NCNLACLGV 102 (208)
Q Consensus 94 ~v~~a~~~~ 102 (208)
.|+++..+.
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999996543
No 108
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=125.65 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=74.8
Q ss_pred CCCCCCCCEEEEcCCCCCC------cHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 16 QFGDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
+..+...++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|++||+ +++..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3445567899999999999 889999999999999999988 4678999999999999999999997 699999
Q ss_pred CCe-EeEEEEccc
Q 028475 89 DGR-RANCNLACL 100 (208)
Q Consensus 89 ~g~-~i~v~~a~~ 100 (208)
+|+ .|+|+++..
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 998 999999854
No 109
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-20 Score=130.55 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~ 97 (208)
.....++|||+|||+++|+++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++||++++..|+|+.|+|++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEE
Confidence 3456789999999999999999999999999988 677777789999999999999999999999999999999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+..+
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8543
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=120.08 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||+++++++|+++|++||+|++|.++ +|||||+|.+.++|++||+ +++..++|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 5799999999999999996 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++..+
T Consensus 76 ~a~~~ 80 (90)
T 2dnq_A 76 ASKNK 80 (90)
T ss_dssp CSSCC
T ss_pred ECCCC
Confidence 98543
No 111
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=120.84 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
....++|||+|||+++|+++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||++++..|+|+.|+|+++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 3466899999999999999999999999999987 66666665 999999999999999999999999999999877
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
..+
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 443
No 112
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-18 Score=119.29 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=71.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
........++|||+|||+++++++|+++|++||.|++|.+++ +||||+|++.++|++||+ +++..|+|+.|
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 345567789999999999999999999999999999999973 399999999999999996 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999543
No 113
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=130.22 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~ 92 (208)
.......++|||+|||+++|+++|+++|+.||. |.+|+|+.++. ++++|||||+|.+.++|++||++++..|+|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345567889999999999999999999999998 89999999987 99999999999999999999999999999999
Q ss_pred eEEEEcccC
Q 028475 93 ANCNLACLG 101 (208)
Q Consensus 93 i~v~~a~~~ 101 (208)
|+|.++..+
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988653
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=123.53 Aligned_cols=79 Identities=30% Similarity=0.514 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.+...++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999876 7899999999999999995 79999999999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
+++.+.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 996544
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=129.48 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
....+.++|||+|||+++|+++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567999999999999999999999999998443332222368899999999999999999996 6999999999999
Q ss_pred EEcccCC
Q 028475 96 NLACLGV 102 (208)
Q Consensus 96 ~~a~~~~ 102 (208)
+++..+.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9996543
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=117.92 Aligned_cols=78 Identities=29% Similarity=0.450 Sum_probs=71.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h-CCCeeCCeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRR 92 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~g~~ 92 (208)
.+..+...++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++ + ++..++|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4456677899999999999999999999999999999999864 7899999999999999997 6 899999999
Q ss_pred eEEEEc
Q 028475 93 ANCNLA 98 (208)
Q Consensus 93 i~v~~a 98 (208)
|+|+++
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999987
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.7e-18 Score=135.39 Aligned_cols=86 Identities=28% Similarity=0.568 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEc
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a 98 (208)
....++|||+|||+++|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.++..|+|+.|.|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999988899999999999999
Q ss_pred ccCCCC
Q 028475 99 CLGVQR 104 (208)
Q Consensus 99 ~~~~~~ 104 (208)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 665443
No 118
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=122.88 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=69.3
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC--eeCCeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAP--VIDGRR 92 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~--~i~g~~ 92 (208)
.....+.++|||+|||+++|+++|+++|++||.|+++.++++ ||||||+|++.++|.+||+ +++. .|.|+.
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 344567889999999999999999999999999999999753 7899999999999999996 5655 489999
Q ss_pred eEEEEcccC
Q 028475 93 ANCNLACLG 101 (208)
Q Consensus 93 i~v~~a~~~ 101 (208)
|.|++++.+
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999543
No 119
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-20 Score=136.14 Aligned_cols=84 Identities=27% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
++.+.++|||+|||+++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+ +++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567889999999999999999999999999998 9999999899999999999999999999997 799999
Q ss_pred CCeEeEEEEcccC
Q 028475 89 DGRRANCNLACLG 101 (208)
Q Consensus 89 ~g~~i~v~~a~~~ 101 (208)
+|+.|+|+++..+
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999998543
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=125.93 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=71.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC--CCeeCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA--APVIDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~--~~~i~g~~i 93 (208)
....+.++|||+|||+++||++|+++|++||.|++|.|+.+ ||||||+|++.++|++||+ ++ +.+|.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34556889999999999999999999999999999999876 7899999999999999996 44 568999999
Q ss_pred EEEEcccCCC
Q 028475 94 NCNLACLGVQ 103 (208)
Q Consensus 94 ~v~~a~~~~~ 103 (208)
+|+++..+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999965443
No 121
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=131.04 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCE----eEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....++|||+|||+++|+++|+++|++||.| .+|.|+.++ +++++|||||+|+++++|++||+++++.|.++.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999975 689999985 79999999999999999999998899999999999
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 122
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.3e-18 Score=119.77 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
....|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.++++|++||+ +|+.++.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 58999999999999999996 79999999999999883
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=122.90 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=69.8
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcccC
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACLG 101 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~~ 101 (208)
++|||+|||+++|+++|+++|++||+|++|.++.+ ++|||||+|.+.++|++||+ +++..++|+.|+|+++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 68999999999999999997 6999999999999999654
Q ss_pred C
Q 028475 102 V 102 (208)
Q Consensus 102 ~ 102 (208)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.9e-18 Score=134.02 Aligned_cols=87 Identities=33% Similarity=0.536 Sum_probs=79.4
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
.+......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.++..++|+.|.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|.++...
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998543
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=120.73 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||+|++|.+..+ +|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44567789999999999999999999999999999999754 7899999999999999995 6999999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
+++..
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99954
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-18 Score=123.58 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=69.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++||+ +++..++|+.|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 445678999999999999999999999999999999973 47899999999999999996 69999999999999
Q ss_pred Eccc
Q 028475 97 LACL 100 (208)
Q Consensus 97 ~a~~ 100 (208)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8853
No 127
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=3.5e-18 Score=136.42 Aligned_cols=81 Identities=27% Similarity=0.367 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+ +++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 6999999999999987
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 128
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-18 Score=117.33 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
..+...++|||+|||+++|+++|+++|++||.|.+|.+++ +||||+|.+.++|++||+ +++..++|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999973 399999999999999997 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999544
No 129
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=120.29 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC--CeEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID--GRRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~--g~~i~ 94 (208)
...+.++|||+|||+++|+++|+++|++||+|++|.+..+ +|||||+|.+.++|++||+ +++..|+ |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999998754 7899999999999999997 7999999 99999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999543
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=124.64 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h--CCCeeCCeE
Q 028475 17 FGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D--AAPVIDGRR 92 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~--~~~~i~g~~ 92 (208)
....+.++|||+|||++ +|+++|+++|++||+|.+|.|+++ +|||||+|++.++|++||+ + ++..|+|+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34567899999999998 999999999999999999999743 7899999999999999996 4 456799999
Q ss_pred eEEEEccc
Q 028475 93 ANCNLACL 100 (208)
Q Consensus 93 i~v~~a~~ 100 (208)
|+|+++..
T Consensus 94 l~V~~a~~ 101 (112)
T 1x4f_A 94 VKVDLSEK 101 (112)
T ss_dssp CEEEEECS
T ss_pred EEEEECcc
Confidence 99999954
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=126.84 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=73.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
....+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++||+ +|+..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 445668899999999999999876 6999999999988753 57889999999999999999996 799999999
Q ss_pred EeEEEEcccCC
Q 028475 92 RANCNLACLGV 102 (208)
Q Consensus 92 ~i~v~~a~~~~ 102 (208)
.|+|+++..+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999996543
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.9e-18 Score=118.83 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=69.0
Q ss_pred cCCCCCCCCCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC
Q 028475 13 GAGQFGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (208)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g 90 (208)
..........++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|++||+ +++..++|
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 13 GLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33445566789999999998 99999999999999999999983 7899999999999999997 79999999
Q ss_pred eEeEEEEccc
Q 028475 91 RRANCNLACL 100 (208)
Q Consensus 91 ~~i~v~~a~~ 100 (208)
+.|+|++++.
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999999854
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=119.68 Aligned_cols=77 Identities=17% Similarity=0.367 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCC-CeeCCeEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAA-PVIDGRRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~-~~i~g~~i~ 94 (208)
.....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++||+ +++ ..++|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3457789999999999999999999999999 6666552 47899999999999999996 799 999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999543
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=8.8e-19 Score=119.13 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCCC------cHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe-Ee
Q 028475 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR-RA 93 (208)
Q Consensus 22 ~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~-~i 93 (208)
.++|||+|||..+ ++++|+++|++||+|.+|.|+ +.+++++|||||+|.+.++|++||+ +|+..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 4578999999999999999999997 699999999 88
Q ss_pred EE
Q 028475 94 NC 95 (208)
Q Consensus 94 ~v 95 (208)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=7.3e-18 Score=121.08 Aligned_cols=75 Identities=27% Similarity=0.513 Sum_probs=68.4
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
.....++|||+|||++ +++++|+++|++||+|++|.| ++|||||+|++.++|++||+ +++..|+|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999998 47899999999999999995 7999999999999
Q ss_pred EEccc
Q 028475 96 NLACL 100 (208)
Q Consensus 96 ~~a~~ 100 (208)
+++..
T Consensus 95 ~~a~~ 99 (110)
T 1wf1_A 95 NMAGE 99 (110)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99953
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=2e-18 Score=124.84 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
...++|||+|||+++++++|+++|++|| +|..+.|..+ +++|||||+|++.++|++||+ +|+.+|+|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 9999988543 478999999999999999996 799999999999999
Q ss_pred cc
Q 028475 98 AC 99 (208)
Q Consensus 98 a~ 99 (208)
+.
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 84
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=119.53 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999997 667654 568999999999999999996 6999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999654
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.6e-18 Score=120.58 Aligned_cols=76 Identities=18% Similarity=0.445 Sum_probs=68.3
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
...+.++|||+|||+ ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++||+ +++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999984 6899999999999999997 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999654
No 139
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.7e-18 Score=124.59 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=63.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE-----
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR----- 92 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~----- 92 (208)
....++|||+|||+++|+++|+++|++||+|++|.|+.+ |||||+|++.++|++||+ +|+.+|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 346789999999999999999999999999999999765 899999999999999997 7999999998
Q ss_pred eEEEEc
Q 028475 93 ANCNLA 98 (208)
Q Consensus 93 i~v~~a 98 (208)
|+|+.+
T Consensus 86 i~v~~~ 91 (115)
T 3beg_B 86 IRVKVD 91 (115)
T ss_dssp CEEEEC
T ss_pred EEeccC
Confidence 555555
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=4e-18 Score=119.41 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~ 92 (208)
+..+.++|||+|||+++++++|+ ++|++||.|.+|.++. +++++|||||+|.+.++|++|++ +++..++|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45577899999999999999999 9999999999998874 46788999999999999999996 6999999999
Q ss_pred eEEEEcccC
Q 028475 93 ANCNLACLG 101 (208)
Q Consensus 93 i~v~~a~~~ 101 (208)
|+|+++..+
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 141
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=119.63 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
...+...++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455678999999999999999999999999988766 3468899999999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++..+
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 9999543
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-17 Score=115.72 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=69.4
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcC--CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
......++|||+|||+++|+++|+++|++| |.|.+|.+. +|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999998874 5699999999999999997 79999999999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|+++..+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpd_A 82 EVTLAKPV 89 (99)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 99999543
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=6.8e-18 Score=131.60 Aligned_cols=83 Identities=29% Similarity=0.418 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||+.+++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999997 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99654
No 144
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=8.5e-18 Score=121.51 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|++||+ +++..++|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999876 4459999999999999999997 7999999999999999
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
.++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=8.1e-18 Score=116.72 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=62.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
.......+|||+|||+++||++|+++|++||+|.+|+|+.+ ++|||||+|+++++|+++.. ....+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34567789999999999999999999999999999999875 68999999999999984321 2334679999999
Q ss_pred EcccCC
Q 028475 97 LACLGV 102 (208)
Q Consensus 97 ~a~~~~ 102 (208)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 986543
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.1e-17 Score=123.76 Aligned_cols=83 Identities=31% Similarity=0.473 Sum_probs=78.1
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||.++|+++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|++ +++..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999997 7999999999999
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
++|.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9984
No 147
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.9e-18 Score=123.29 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=69.6
Q ss_pred CEEEEcCC----CCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECC----HHH----HHHHHH---hCCCe
Q 028475 23 TKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV---DAAPV 87 (208)
Q Consensus 23 ~~lfVgnL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~----~~~----a~~Ai~---~~~~~ 87 (208)
++|||+|| |+.++|++|+++|++||+|.+|.++.|+.|++++|||||+|.+ +++ |.+||+ +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788876 38999
Q ss_pred eCCeEeEEEEcc
Q 028475 88 IDGRRANCNLAC 99 (208)
Q Consensus 88 i~g~~i~v~~a~ 99 (208)
|+|+.|+|++.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999874
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=3.9e-17 Score=124.00 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
.++|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++|++ +++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999899999999999999999999997 799999999999999854
Q ss_pred C
Q 028475 101 G 101 (208)
Q Consensus 101 ~ 101 (208)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=3.6e-17 Score=127.92 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
....++|||+|||+.+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3677999999999999999999999999999999999999899999999999999999999997 699999999999999
Q ss_pred cccCC
Q 028475 98 ACLGV 102 (208)
Q Consensus 98 a~~~~ 102 (208)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 96543
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=121.15 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNL 97 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~ 97 (208)
+...++|||+|||+++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|++||+ +|+..++|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999998864 47899999999999999996 799999999999999
Q ss_pred cccC
Q 028475 98 ACLG 101 (208)
Q Consensus 98 a~~~ 101 (208)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 9653
No 151
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=1.3e-17 Score=126.16 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=73.9
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
.......++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+ +++..|+|+.|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999877 58999999999999999997 799999999999
Q ss_pred EEEcccC
Q 028475 95 CNLACLG 101 (208)
Q Consensus 95 v~~a~~~ 101 (208)
|+++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999543
No 152
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=3.2e-17 Score=125.74 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC--eEe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRA 93 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g--~~i 93 (208)
.......+|||+||++.+|+++|+++|++||+|++|.|..++ ++|||||+|++.++|++|++ +++.+|.+ +.|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344567889999999999999999999999999999987543 57899999999999999996 79999965 999
Q ss_pred EEEEcccC
Q 028475 94 NCNLACLG 101 (208)
Q Consensus 94 ~v~~a~~~ 101 (208)
+|++++++
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999765
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.2e-17 Score=124.84 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
..++|||+|||+++++++|+++|++||+|.++.++.++.+++++|||||+|.++++|++|++ +++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999999899999999999999999999996 79999999999999985
Q ss_pred cC
Q 028475 100 LG 101 (208)
Q Consensus 100 ~~ 101 (208)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.3e-17 Score=113.23 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999984 458899999999999999995 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999544
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=116.14 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
...++|||+|||+++|+++|+++|++||+|.+|+|+.+ ++|||||+|++.++|++|+.. ...+.++.|+|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 689999999999999865433 345799999999885
Q ss_pred cC
Q 028475 100 LG 101 (208)
Q Consensus 100 ~~ 101 (208)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=4.5e-17 Score=129.04 Aligned_cols=82 Identities=22% Similarity=0.467 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||.++|+++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+ +++..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999997 7999999999999999
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
..+
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 157
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=7.4e-18 Score=128.45 Aligned_cols=81 Identities=31% Similarity=0.602 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
..++|||+|||.++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|+++++..++|+.|+|+++.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 35699999999999999999999999999999999999899999999999999999999999988999999999999965
Q ss_pred C
Q 028475 101 G 101 (208)
Q Consensus 101 ~ 101 (208)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=115.42 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEE-EEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
.....++|||+|||+++++++|+++|++||.|.+| .|+.++.++ .|||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 33457899999999999999999999999999999 488886543 39999999999999996 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999654
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=7e-17 Score=123.56 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+.+|+++|+++|++||+|.++.++.++.+++++|||||+|.+.++|++|++ +++..++|+.|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447899999999999999999999999999999999999899999999999999999999997 6999999999999987
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.3e-18 Score=126.54 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEE--------EEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA--------VVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI 88 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v--------~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i 88 (208)
.....++|||+|||+++|+++|+++|++||.|..+ .+. .+++++|||||+|.+.++|++||+ +|+..|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35567899999999999999999999999998764 222 368899999999999999999997 799999
Q ss_pred CCeEeEEEEcccCC
Q 028475 89 DGRRANCNLACLGV 102 (208)
Q Consensus 89 ~g~~i~v~~a~~~~ 102 (208)
.|+.|.|+++....
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999996543
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=119.42 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
....++|||+|||+++|+++|+++|++||+|. +.++.++.+ ++++|||||+|+++++|++||+.. ..++|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 34678999999999999999999999999999 888888877 799999999999999999999743 3488888887
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6553
No 162
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.9e-17 Score=113.36 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++++++|+++|++| +|.++++. +++|||||+|.+.++|++||+ +++.+++|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 468999999999999999997 7999999999999998
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=117.68 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCCCCCCEEEE--cCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCee-----
Q 028475 17 FGDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVI----- 88 (208)
Q Consensus 17 ~~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i----- 88 (208)
..+.+.++||| +||++++||++|+++|++||+|++|.|+.+ +|||||+|++.++|++|++ +|+.++
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 779999999999999999999999988643 7899999999999999996 799998
Q ss_pred CCeEeEEEEcc
Q 028475 89 DGRRANCNLAC 99 (208)
Q Consensus 89 ~g~~i~v~~a~ 99 (208)
.++.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68899999985
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=1.4e-16 Score=117.90 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceE-EEEEECCHHHHHHHHH-hCCCeeCC--
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG-- 90 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~-afV~F~~~~~a~~Ai~-~~~~~i~g-- 90 (208)
.........+|||+||++.+|+++|+++|++||+|.+|.+..+ .+|| |||+|++.++|++|++ +|+.+|.+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 3444467778999999999999999999999999999988764 2678 9999999999999996 79999988
Q ss_pred eEeEEEEcccC
Q 028475 91 RRANCNLACLG 101 (208)
Q Consensus 91 ~~i~v~~a~~~ 101 (208)
+.|+|++++++
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 89999999654
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=6.1e-17 Score=111.00 Aligned_cols=71 Identities=20% Similarity=0.457 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCee
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVI 88 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i 88 (208)
...++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|++||++++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999 8 9999998755 7899999999999999997799999
Q ss_pred CCeEeEEE
Q 028475 89 DGRRANCN 96 (208)
Q Consensus 89 ~g~~i~v~ 96 (208)
+|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999986
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=5.7e-17 Score=129.32 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEcc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLAC 99 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~ 99 (208)
..++|||+|||+++|+++|+++|++||.|++|+|+.|+ +.++|||||+|.+.++|++||+ +|+..|+|+.|+|+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 4579999999999999999996 79999999999999997
Q ss_pred cCC
Q 028475 100 LGV 102 (208)
Q Consensus 100 ~~~ 102 (208)
.+.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 167
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.7e-16 Score=125.33 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
..++|||+|||+++|+++|+++|++||.|.+|+|+++. +++++|||||+|+++++|++||+..+..++|+.|+|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999986 48999999999999999999999767799999999998854
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=5.9e-17 Score=123.41 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEccc
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~~ 100 (208)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.++++|++||+. .+.++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999984 5789999999988754
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=3e-16 Score=119.41 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCC--eEeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDG--RRAN 94 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g--~~i~ 94 (208)
.....++|||+|||..+++++|+++|++||.|.++.++.++.+++++|+|||+|.+.++|++|++ +++..++| +.|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999997 79999988 9999
Q ss_pred EEEc
Q 028475 95 CNLA 98 (208)
Q Consensus 95 v~~a 98 (208)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=1.4e-16 Score=126.26 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.++++|++||+ +++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346899999999999999999999999999999999999899999999999999999999997 7999999999999876
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.1e-16 Score=118.89 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=71.5
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
++|||+|||+++|+++|+++|++||+|.+|.++.++. ++++|||||+|.+.++|++|++ +++..+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999999999999999999974 7799999999999999999994 799999999999999854
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.6e-16 Score=118.02 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE--eEE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR--ANC 95 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~--i~v 95 (208)
....++|||+|||..+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++ +++..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 4467899999999999999999999999999999999999899999999999999999999997 7999999975 777
Q ss_pred EEc
Q 028475 96 NLA 98 (208)
Q Consensus 96 ~~a 98 (208)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.9e-16 Score=113.81 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceE-EEEEECCHHHHHHHHH-hCCCeeCC--eEeEEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACV-DAAPVIDG--RRANCN 96 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~-afV~F~~~~~a~~Ai~-~~~~~i~g--~~i~v~ 96 (208)
....|||+||++.+|+++|+++|++||+|++|.|... .|| |||+|++.++|++|++ +++.+|.| +.|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3456789999999999999999999999999998652 276 9999999999999996 79999987 689999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
+++++
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 98654
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2.9e-16 Score=114.96 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=68.3
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|| ++|+++|+++|++||+|.+|.|. +++|||||+|++.++|++||+ +++..|+|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457889999996 69999999999999999999985 358899999999999999995 6999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++..+
T Consensus 106 ~~a~~~ 111 (121)
T 2bz2_A 106 NIARKQ 111 (121)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 999654
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=107.21 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCCE-EEEcCCCCCCcHHH----HHHHHhcC-CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE
Q 028475 20 TTYTK-VFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (208)
Q Consensus 20 ~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~ 92 (208)
.++.+ |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++ +++.++.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999988 55899999 599988 23 999999999999999996 7999999999
Q ss_pred eEEEEcccCC
Q 028475 93 ANCNLACLGV 102 (208)
Q Consensus 93 i~v~~a~~~~ 102 (208)
|+|++|+.+.
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999996543
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=4.7e-16 Score=123.79 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCEEEEcCCC-CCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 21 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..++|||+||+ +.+|+++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+ +|+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999999876 37999999999999999996 7999999999999998
Q ss_pred cc
Q 028475 99 CL 100 (208)
Q Consensus 99 ~~ 100 (208)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=6.7e-16 Score=118.12 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCC--CcceEEEEEECCHHHHHHHHH-hCCCeeC---CeEeE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg--~~~G~afV~F~~~~~a~~Ai~-~~~~~i~---g~~i~ 94 (208)
..++|||+|||+++|+++|+++|++||+|.+|+|+.++.++ +++|||||+|.+.++|++|++ +++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999877 899999999999999999996 6887665 56777
Q ss_pred EEEccc
Q 028475 95 CNLACL 100 (208)
Q Consensus 95 v~~a~~ 100 (208)
+..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776643
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=9.8e-16 Score=117.17 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC---CeEeE
Q 028475 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---GRRAN 94 (208)
Q Consensus 19 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~---g~~i~ 94 (208)
....++|||+|||+++|+++|+++|++||.|+++.++.++ +++++|||||+|.+.++|++||+ +|+..+. ++.|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 58999999999999999999995 6887765 49999
Q ss_pred EEEc
Q 028475 95 CNLA 98 (208)
Q Consensus 95 v~~a 98 (208)
|++|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.2e-15 Score=107.69 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCC-----CCcHHHHHHHHhcCCCEeEEEEeecCCC-CCcceEEEEEECCHHHHHHHHH-hCCCeeCCeE
Q 028475 20 TTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACV-DAAPVIDGRR 92 (208)
Q Consensus 20 ~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~ 92 (208)
.+++.|+|.||.. +.++++|+++|++||+|.+|.|+.++.+ ++++||+||+|.+.++|++|++ +|+..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999952 2478999999999999999999998754 6889999999999999999996 7999999999
Q ss_pred eEEEEccc
Q 028475 93 ANCNLACL 100 (208)
Q Consensus 93 i~v~~a~~ 100 (208)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.3e-15 Score=125.78 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe
Q 028475 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR 91 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~ 91 (208)
.+....++|||+|||+++|+++|+ ++|++||.|.+|.++. +++++|||||+|.+.++|++||+ +++..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 355678999999999999999977 8999999999999876 57899999999999999999995 799999999
Q ss_pred EeEEEEcccCC
Q 028475 92 RANCNLACLGV 102 (208)
Q Consensus 92 ~i~v~~a~~~~ 102 (208)
.|+|+++..+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.2e-15 Score=117.11 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
.....++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988766 4578899999999999999999997 79999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99643
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=8.6e-16 Score=124.85 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCC---------cHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCe
Q 028475 18 GDTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPV 87 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~ 87 (208)
.+...++|||+||+..+ +|++|+++|++||+|++|+|+.+ +|||||+|.++++|++|++ +++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45678999999999998 79999999999999999999864 7899999999999999996 79999
Q ss_pred e------------CCeEeEEEEcccCC
Q 028475 88 I------------DGRRANCNLACLGV 102 (208)
Q Consensus 88 i------------~g~~i~v~~a~~~~ 102 (208)
| .|+.|.|+||....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 8 89999999996543
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=1.3e-15 Score=126.46 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCC-CCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~-tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v 95 (208)
.....++|||+|||+. +|+++|+++|++||.|..|+|+.+.. |++++|||||+|.+.++|++||++++..|+|+.|+|
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISV 285 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEE
Confidence 3456789999999999 99999999999999999999999876 699999999999999999999966999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999644
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=2e-16 Score=121.59 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~ 96 (208)
......++|||+|||+++|+++|+++|++||.+.. .++.+..+++++|||||+|.++++|++||++++..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 45567899999999999999999999999998766 34445567889999999999999999999999999999999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
++..+
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88543
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=5.3e-15 Score=122.15 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=71.2
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-CeEeE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRAN 94 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~~i~ 94 (208)
......++|||+|||..+|+++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+ +++..|. |+.|+
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 345567899999999999999999999999999999998664 6899999999999999997 7999999 99999
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
|++++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99984
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=9.6e-15 Score=120.70 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
...++|||+|||+++|+++|+++|++||.|.++.++.++.+++++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999999999995 7999999999999999
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
..+
T Consensus 173 ~~~ 175 (284)
T 3smz_A 173 DAG 175 (284)
T ss_dssp CGG
T ss_pred CCC
Confidence 654
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=4.9e-15 Score=122.48 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEcCCCCCC-cHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeE
Q 028475 17 FGDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRAN 94 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~ 94 (208)
......++|||+|||+++ |+++|+++|++||.|.++.|+.++ +++++|+|||+|.+.++|.+|++ +++..++|+.|+
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 344677899999999995 999999999999999999999987 69999999999999999999997 799999999999
Q ss_pred EEEcccCCC
Q 028475 95 CNLACLGVQ 103 (208)
Q Consensus 95 v~~a~~~~~ 103 (208)
|+++.++..
T Consensus 258 v~~a~~~~~ 266 (284)
T 3smz_A 258 VSFCAPGPP 266 (284)
T ss_dssp EEECCSSSC
T ss_pred EEEecCCCc
Confidence 999965543
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=3.5e-15 Score=120.17 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
.....++|||+|||+ ++++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++||+ +++..+.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999875 7899999999999999996 7999999999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
.++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998654
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-14 Score=101.88 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCCCCCEEEEcCCCCCCc-----------HHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC
Q 028475 17 FGDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DA 84 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~ 84 (208)
......++|+|.||....+ +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|++||+ +|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4556788999999944432 6899999999999999965 553 379999999999999999995 79
Q ss_pred CCeeCCeEeEEEEcccCC
Q 028475 85 APVIDGRRANCNLACLGV 102 (208)
Q Consensus 85 ~~~i~g~~i~v~~a~~~~ 102 (208)
+..++|+.|+|+++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999996543
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=9.7e-15 Score=121.14 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeE
Q 028475 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (208)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~ 94 (208)
....+...++|||+|||+++|+++|+++|+.||+|.+|.|+.++.+ ++|||||+|.+.++|++||++++..+.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 3445677899999999999999999999999999999999998743 48999999999999999998899999999999
Q ss_pred EEEcc
Q 028475 95 CNLAC 99 (208)
Q Consensus 95 v~~a~ 99 (208)
|.++.
T Consensus 112 v~~~~ 116 (292)
T 2ghp_A 112 VSHLT 116 (292)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98764
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=8.6e-15 Score=114.75 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEc
Q 028475 21 TYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLA 98 (208)
Q Consensus 21 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a 98 (208)
..++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++||+ +++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998874 7899999999999999997 7999999999999998
Q ss_pred ccC
Q 028475 99 CLG 101 (208)
Q Consensus 99 ~~~ 101 (208)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=2.2e-14 Score=109.59 Aligned_cols=73 Identities=18% Similarity=0.416 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeC
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~ 89 (208)
+.++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.++++|++||++++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 777777643 479999999999999999977999999
Q ss_pred CeEeEEEEcc
Q 028475 90 GRRANCNLAC 99 (208)
Q Consensus 90 g~~i~v~~a~ 99 (208)
|+.|+|.++.
T Consensus 77 g~~i~v~~~~ 86 (172)
T 2g4b_A 77 GQSLKIRRPH 86 (172)
T ss_dssp TEECEEECCS
T ss_pred CceeeecCCc
Confidence 9999998764
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.1e-14 Score=115.87 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCCCE--eEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCe----E
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGR----R 92 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~----~ 92 (208)
.+.++|||+|||+++|+++|+++|++||.| ++++++.++ ++.+|+|||+|++.++|.+||+ +|+.+|.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999999 899998875 5567999999999999999996 799999887 3
Q ss_pred eEEEEc
Q 028475 93 ANCNLA 98 (208)
Q Consensus 93 i~v~~a 98 (208)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 555543
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=97.70 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCCCCEEEEcCCC-------CCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCe
Q 028475 19 DTTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (208)
Q Consensus 19 ~~~~~~lfVgnLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~ 91 (208)
+....+|-|.-.. ..+++++|+++|++||+|++|.|+ ++++|||||+|++.++|++||+. ...+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCC
Confidence 4446677776443 458999999999999999999997 35799999999999999999986 3447899
Q ss_pred EeEEEEcccC
Q 028475 92 RANCNLACLG 101 (208)
Q Consensus 92 ~i~v~~a~~~ 101 (208)
.|+|+++..+
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 9999998544
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.1e-14 Score=116.85 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEE
Q 028475 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANC 95 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v 95 (208)
......++|||+|||+++|+++|+++|++||.|.+|.|.++ +|||||+|.+.++|++||+ +++..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 33456789999999999999999999999999999999654 7899999999999999997 7999999999999
Q ss_pred EEcc
Q 028475 96 NLAC 99 (208)
Q Consensus 96 ~~a~ 99 (208)
.++.
T Consensus 91 ~~a~ 94 (261)
T 3sde_A 91 RFAT 94 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 9885
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=8.8e-15 Score=104.31 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=62.6
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEe
Q 028475 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRA 93 (208)
Q Consensus 27 VgnLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i 93 (208)
+.+|++.+++++|++.| ++||+|.+|.|++++. ++++|||||+|.+.++|++|++ +|+..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677778888777666 9999999999998864 7899999999999999999996 79999999999
Q ss_pred EEEEc
Q 028475 94 NCNLA 98 (208)
Q Consensus 94 ~v~~a 98 (208)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=4.1e-14 Score=110.42 Aligned_cols=74 Identities=18% Similarity=0.404 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeC
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVID 89 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~ 89 (208)
..++|||+|||+++|+++|+++|++| | .|.++.+ ++++|||||+|.++++|++||++++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 6666665 34589999999999999999977999999
Q ss_pred CeEeEEEEccc
Q 028475 90 GRRANCNLACL 100 (208)
Q Consensus 90 g~~i~v~~a~~ 100 (208)
|+.|+|.++..
T Consensus 77 g~~i~v~~~~~ 87 (198)
T 2yh0_A 77 GQSLKIRRPHD 87 (198)
T ss_dssp TEEEEEECCCC
T ss_pred CceEEEeCCCC
Confidence 99999998754
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=111.10 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-CeEeEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~~i~v~ 96 (208)
.+.++|||+|||..+++++|+++|++|| .|.+++++.+ .+|+|||+|.+.++|++|++ +++..++ |+.|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4588999999999999999999999999 9999999764 27899999999999999997 7999999 9999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98543
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=5.9e-14 Score=100.19 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCC--CCCC--------cHHHHHHHHhcCCCEeEEEEeecCCC--CCcceEEEEEECCHHHHHHHHH-hCC
Q 028475 19 DTTYTKVFVGGL--AWET--------QKETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACV-DAA 85 (208)
Q Consensus 19 ~~~~~~lfVgnL--p~~~--------te~~L~~~F~~~G~i~~v~i~~~~~t--g~~~G~afV~F~~~~~a~~Ai~-~~~ 85 (208)
..+++.|.|.|+ +.+. .+++|++.|++||+|++|.|++++.+ ++++|++||+|++.++|++|++ +|+
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346788999987 3333 34789999999999999999998765 3679999999999999999995 799
Q ss_pred CeeCCeEeEEEEccc
Q 028475 86 PVIDGRRANCNLACL 100 (208)
Q Consensus 86 ~~i~g~~i~v~~a~~ 100 (208)
..++|+.|.|++...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998854
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=4.9e-14 Score=113.41 Aligned_cols=77 Identities=8% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC-CeEeEEE
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID-GRRANCN 96 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~-g~~i~v~ 96 (208)
.+.++|||+|||+++++++|+++|++|| .|.+|+++.+ .+|+|||+|.+.++|++||+ +++..+. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 37899999999999999997 7999999 9999999
Q ss_pred EcccC
Q 028475 97 LACLG 101 (208)
Q Consensus 97 ~a~~~ 101 (208)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99643
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=9.5e-14 Score=113.92 Aligned_cols=80 Identities=29% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h-CCCeeC---CeEeEE
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-D-AAPVID---GRRANC 95 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~---g~~i~v 95 (208)
..++|||+|||..+|+++|+++|++||.|.+|.|+.+ .+++++|||||+|.+.++|.+||+ + ++..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999996 5 455554 999999
Q ss_pred EEcccC
Q 028475 96 NLACLG 101 (208)
Q Consensus 96 ~~a~~~ 101 (208)
+++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998654
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=2.5e-13 Score=98.91 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCC-----CCcHHHHHHHHhcCCCEeEEEEeecCC----CCCcceEEEEEECCHHHHHHHHH-hCCCeeCC
Q 028475 21 TYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACV-DAAPVIDG 90 (208)
Q Consensus 21 ~~~~lfVgnLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~----tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g 90 (208)
+++.|+|.|+-. +-.+++|++.|++||+|.+|.|+.++. +++++|++||+|.+.++|.+|++ +|+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 224789999999999999999999865 45678999999999999999996 79999999
Q ss_pred eEeEEEEccc
Q 028475 91 RRANCNLACL 100 (208)
Q Consensus 91 ~~i~v~~a~~ 100 (208)
+.|.|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998854
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=5.3e-13 Score=113.74 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=64.0
Q ss_pred CCCCCCCEEEEcC--CCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC---C
Q 028475 17 FGDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID---G 90 (208)
Q Consensus 17 ~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~---g 90 (208)
..+.++++|||+| |+..+||++|+++|++||+|++|.+.. +||||||+|++.++|++||+ +|+.++. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3466788999999 588999999999999999999987753 47999999999999999996 7999872 4
Q ss_pred e--EeEEEEc
Q 028475 91 R--RANCNLA 98 (208)
Q Consensus 91 ~--~i~v~~a 98 (208)
+ .|.|.++
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 4 5666665
No 204
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-11 Score=83.73 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCC----CCcH----HHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCC
Q 028475 19 DTTYTKVFVGGLAW----ETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (208)
Q Consensus 19 ~~~~~~lfVgnLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g 90 (208)
.++..+|+|.-++. +..+ .+|.+.|++||+|..+++..++ +||+|.+.++|.+||++++.+++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 35677888987762 3333 6799999999999999999873 899999999999999999999999
Q ss_pred eEeEEEEccc
Q 028475 91 RRANCNLACL 100 (208)
Q Consensus 91 ~~i~v~~a~~ 100 (208)
+.|+|+++++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998853
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=9e-12 Score=90.07 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCC--C--------CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeC
Q 028475 21 TYTKVFVGGLAW--E--------TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVID 89 (208)
Q Consensus 21 ~~~~lfVgnLp~--~--------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~ 89 (208)
+++.|.+.|+=. + -.+++|++.|++||.|++|.|.++. .+|++||+|.+.++|++|++ +|+..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456777887621 1 1246889999999999999997653 48999999999999999996 7999999
Q ss_pred CeEeEEEEccc
Q 028475 90 GRRANCNLACL 100 (208)
Q Consensus 90 g~~i~v~~a~~ 100 (208)
|+.|.|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.9e-11 Score=85.73 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECC-HHHHHHHHH-h--CCCeeCCe
Q 028475 17 FGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACV-D--AAPVIDGR 91 (208)
Q Consensus 17 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~-~~~a~~Ai~-~--~~~~i~g~ 91 (208)
..-.+.+.|+|+||+.. +++++|+++|++||+|..|.+..+.. .|||+|.+ +++|++|++ + .+.+|++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44567899999999999 99999999999999999999988865 69999999 899999996 4 46779998
Q ss_pred EeEEEEcc
Q 028475 92 RANCNLAC 99 (208)
Q Consensus 92 ~i~v~~a~ 99 (208)
.++++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=80.24 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCCCCCCCEEEEcCCCCC-----CcH----HHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCC
Q 028475 16 QFGDTTYTKVFVGGLAWE-----TQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (208)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~ 86 (208)
+...++..+|+|.-++.. +.+ .+|.+.|++||+|..++|..++ +||+|.+.++|.+||++++.
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGS
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCe
Confidence 345567889999988643 222 5689999999999999999884 99999999999999999999
Q ss_pred eeCCeEeEEEEcc
Q 028475 87 VIDGRRANCNLAC 99 (208)
Q Consensus 87 ~i~g~~i~v~~a~ 99 (208)
+++|+.|+|++..
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998763
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=2.4e-09 Score=85.35 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHhcCCCEeEEEEeecC----CCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEEEccc
Q 028475 33 ETQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCNLACL 100 (208)
Q Consensus 33 ~~te~~L~~~F~~~G~i~~v~i~~~~----~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~~a~~ 100 (208)
+-.+++|++.|++||.|.++.|.++. .+++++|++||+|.+.++|++||+ +++..++||.|.|++...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999998554 445899999999999999999996 799999999999998743
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=9.7e-07 Score=62.37 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHHHhcC-----CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEe
Q 028475 20 TTYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRA 93 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i 93 (208)
...++|-+=+||..++++.|+.+.+.+ |.++.+.+..|. +-|+|+|.|...|-+|. .+++.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346677788999999999999999999 999999998884 48999999999999987 689999999999
Q ss_pred EEEEc
Q 028475 94 NCNLA 98 (208)
Q Consensus 94 ~v~~a 98 (208)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98643
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.7e-05 Score=55.47 Aligned_cols=73 Identities=29% Similarity=0.352 Sum_probs=62.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhc-C----CCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-F----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-~----G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~ 92 (208)
...-.++|.|.|||+.+.++.|+-+|+. - |+|++++... +-|+|+|.+.+.|++.|+...|.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3455689999999999999999999976 2 6888887753 3789999999999999988889999999
Q ss_pred eEEEEc
Q 028475 93 ANCNLA 98 (208)
Q Consensus 93 i~v~~a 98 (208)
|.|...
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 999654
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00023 Score=49.80 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=60.4
Q ss_pred CCCCEEEEcCCCCCCc-----HHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCeeCCeEe
Q 028475 20 TTYTKVFVGGLAWETQ-----KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC-VDAAPVIDGRRA 93 (208)
Q Consensus 20 ~~~~~lfVgnLp~~~t-----e~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai-~~~~~~i~g~~i 93 (208)
.-..+|+|.||+.++- .+.++++|..|+++.....+..- .-..|.|.+.++|.+|- ++++..++|+++
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 4467899999988652 25789999999998887776552 24679999999999997 479999999999
Q ss_pred EEEEcc
Q 028475 94 NCNLAC 99 (208)
Q Consensus 94 ~v~~a~ 99 (208)
+|-++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999985
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.00053 Score=49.20 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCC-eEeEEE
Q 028475 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCN 96 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g-~~i~v~ 96 (208)
.....+-|.|-+.|++. .+.|.+.|++||+|.+...... ..+-.|.|+++.+|++||..|+..|++ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34457788888998884 6778889999999998876222 348999999999999999999999985 667776
Q ss_pred Ec
Q 028475 97 LA 98 (208)
Q Consensus 97 ~a 98 (208)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.00087 Score=45.87 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=53.9
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCC--cceEEEEEECCHHHHHHHHH-hCCCeeC
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACV-DAAPVID 89 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~--~~G~afV~F~~~~~a~~Ai~-~~~~~i~ 89 (208)
++|.|++||+.+||+++.+.++...++....+...+.+.+ .-.-|+|.|.+.+++..-.+ .+++.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 6899999999999999999999888877777766554433 23679999999999888886 4887753
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00045 Score=47.69 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=45.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
..+-++| ..|+++...||.++|+.||.| .|+++.|. .|||.|.+++.|..|+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 3455555 999999999999999999954 67788775 79999999999999986
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.0009 Score=46.32 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=43.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
-++| ..|+++...||.++|+.||. ..|.++.|. .|||.|.+++.|..|+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 4555 99999999999999999994 478888885 79999999999999996
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.59 E-value=0.004 Score=45.29 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=54.1
Q ss_pred CEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeec--------CCCCC-----cceEEEEEECCHHHHHHHHHhCCCee
Q 028475 23 TKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITD--------KATGR-----SKGYGFVTFREPEAAMKACVDAAPVI 88 (208)
Q Consensus 23 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~--------~~tg~-----~~G~afV~F~~~~~a~~Ai~~~~~~i 88 (208)
..|.|-+.|++ ....+.+.|++||.|.+ ..+..+ +.+.+ ...+-.|+|++..+|++||..|+..|
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 45666677655 45668889999999876 211110 00011 24577999999999999999999999
Q ss_pred CCeEeEEEEcc
Q 028475 89 DGRRANCNLAC 99 (208)
Q Consensus 89 ~g~~i~v~~a~ 99 (208)
+|..|-|....
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988887654
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=58.10 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
.++|+|. .+..+++.+|.++|++||+|.++.+-.++ .-|+.|||.+.++++++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 6899997 79999999999999999999998776542 36999999999999988744
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.10 E-value=0.0063 Score=41.98 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCC--cceEEEEEECCHHHHHHHHHh-CCCee
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVD-AAPVI 88 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~--~~G~afV~F~~~~~a~~Ai~~-~~~~i 88 (208)
-.-+|.|+.||+.+||+++.+.++..-++........+.+.+ .-.-|+|.|.+.+++..-.+. +++.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 345899999999999999888887654543333322222221 124689999999999888864 77764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.18 E-value=0.023 Score=41.92 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHh
Q 028475 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (208)
Q Consensus 51 ~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~ 83 (208)
.+.|+.+. .+++||+||+|.+.++|++|++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHh
Confidence 45677774 36899999999999999999953
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.01 E-value=0.026 Score=41.38 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=34.4
Q ss_pred CCcceEEEEEECCHHHHHHHHH-h-CCCeeCCeEeEEEEccc
Q 028475 61 GRSKGYGFVTFREPEAAMKACV-D-AAPVIDGRRANCNLACL 100 (208)
Q Consensus 61 g~~~G~afV~F~~~~~a~~Ai~-~-~~~~i~g~~i~v~~a~~ 100 (208)
.+.+|+++|+|.+.++|++|++ + ++.+++| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 5678999999999999999995 7 8999999 899987754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.57 E-value=1.3 Score=39.14 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
....++|+ +|..+...+|.+.|+.||.+ +|+++.+. .|||.|.+.+.|..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHH
Confidence 34566666 88899999999999999964 66666554 79999999999999885
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.31 E-value=0.97 Score=31.20 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHH
Q 028475 18 GDTTYTKVFVGGLAWETQKET 38 (208)
Q Consensus 18 ~~~~~~~lfVgnLp~~~te~~ 38 (208)
.....++|||+|||+++|++.
T Consensus 93 ~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 93 RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred ccCCCCceEeCCCCCCccccc
Confidence 334566899999999999874
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=63.24 E-value=25 Score=21.97 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCC-----CEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCeeCCeEeEEE
Q 028475 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV-DAAPVIDGRRANCN 96 (208)
Q Consensus 24 ~lfVg-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~-~~~~~i~g~~i~v~ 96 (208)
+|+|. +--..++..+|..++..-+ .|-.+++..+ |.||+-.... +.++++ ++...+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 45553 1223466677777775443 3556666443 8899887554 455664 67788899999887
Q ss_pred Ec
Q 028475 97 LA 98 (208)
Q Consensus 97 ~a 98 (208)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.01 E-value=54 Score=24.54 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=33.4
Q ss_pred CcHHHHHHHH--hcCCCEeEEEEeecCCCCCcceEEEEEEC-CHHHHHHHHHh
Q 028475 34 TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVD 83 (208)
Q Consensus 34 ~te~~L~~~F--~~~G~i~~v~i~~~~~tg~~~G~afV~F~-~~~~a~~Ai~~ 83 (208)
....+|++.| +.|.+++ ++.+.++ ..+.|++.|+|. +-.-...|+++
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 3457899977 8998875 5555554 347899999997 55566666654
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=47.49 E-value=30 Score=23.54 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCCCCcHHHHHHHH-hcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCeeCCeEeEEEEcc
Q 028475 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (208)
Q Consensus 30 Lp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~~i~g~~i~v~~a~ 99 (208)
++.-+.-++|.... +.||.-.++..+.+ -..|-..+.++.++||++-.....-+.|+|-...
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 45667778877766 56898777777633 3678899999999999852222233344554443
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=43.36 E-value=52 Score=19.71 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=42.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCC
Q 028475 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (208)
Q Consensus 22 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~~~~~ 86 (208)
..++.|.++.-..=...|++.+.+ ..|..+.+... .+-+.|+|++.++..++|+..+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 456788888777777889999988 78888877443 44677888866777777776554
No 227
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.14 E-value=60 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.9
Q ss_pred CEeEEEEeecCCCCCcceEEEEEECC
Q 028475 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (208)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (208)
+|++|++..-...++-+++|=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877666668889999999975
No 228
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=28.17 E-value=79 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.8
Q ss_pred CEeEEEEeecCCCCCcceEEEEEECC
Q 028475 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (208)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (208)
+|++|+|..-...++-+++|=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788877665568889999999975
No 229
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.00 E-value=86 Score=21.42 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.3
Q ss_pred CEeEEEEeecCCCCCcceEEEEEECC
Q 028475 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (208)
Q Consensus 48 ~i~~v~i~~~~~tg~~~G~afV~F~~ 73 (208)
+|++|+|..-...++-+++|=|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777776665568889999999975
No 230
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.59 E-value=11 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCEeEEEEeecCCCCCcceEEEEEEC
Q 028475 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (208)
Q Consensus 37 ~~L~~~F~~~G~i~~v~i~~~~~tg~~~G~afV~F~ 72 (208)
+|+.++|...|.|+.. .+ .+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 4556667666766532 22 3889999876
No 231
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.88 E-value=73 Score=28.81 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCCCcHHHHHHHH--h--cCCCEeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Q 028475 29 GLAWETQKETMEKYF--E--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (208)
Q Consensus 29 nLp~~~te~~L~~~F--~--~~G~i~~v~i~~~~~tg~~~G~afV~F~~~~~a~~Ai~ 82 (208)
..+.+.+--||..+| + .+|.|+++.|..-+. ...+..+++.|.+.++|.+++.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~ 406 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLR 406 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHH
Confidence 344555556788888 2 578899988766543 3446688999999999999884
No 232
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.86 E-value=1.9e+02 Score=19.52 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHHHhc-------CCCEeEEEEeecCCCCCcceE---EEEEECCHHHHHHHH
Q 028475 21 TYTKVFVGGLAWETQKETMEKYFEQ-------FGEILEAVVITDKATGRSKGY---GFVTFREPEAAMKAC 81 (208)
Q Consensus 21 ~~~~lfVgnLp~~~te~~L~~~F~~-------~G~i~~v~i~~~~~tg~~~G~---afV~F~~~~~a~~Ai 81 (208)
..+-|.+-.|...++++++.++.+. ...|+++.+-.+.. ...++| -.++|++.++.+.-.
T Consensus 21 mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 21 GIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 3444555578888888776555433 44677777766643 333443 346788887776443
No 233
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.65 E-value=77 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc
Q 028475 24 KVFVGGLAWETQKETMEKYFEQ 45 (208)
Q Consensus 24 ~lfVgnLp~~~te~~L~~~F~~ 45 (208)
-..|+|||.+++..-|.++++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 234
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.27 E-value=50 Score=20.65 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.2
Q ss_pred ceEEEEEECCHH
Q 028475 64 KGYGFVTFREPE 75 (208)
Q Consensus 64 ~G~afV~F~~~~ 75 (208)
+..|+|.|+|..
T Consensus 37 ~~~ClV~FeD~s 48 (68)
T 2e5p_A 37 REVCLVQFEDDS 48 (68)
T ss_dssp TTEEEEEETTTE
T ss_pred CcEEEEEEccCC
Confidence 568999998643
Done!