Your job contains 1 sequence.
>028476
MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTA
VTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGSKTQGSEVS
KTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSK
TSSSSVSQVNGKGNIEKAAITGEADGVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028476
(208 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151271 - symbol:MOS11 "AT5G02770" species:370... 366 1.2e-33 1
UNIPROTKB|P82979 - symbol:SARNP "SAP domain-containing ri... 148 1.5e-10 1
UNIPROTKB|F1PVE3 - symbol:SARNP "Uncharacterized protein"... 147 2.0e-10 1
UNIPROTKB|F1SPJ5 - symbol:SARNP "Uncharacterized protein"... 147 2.0e-10 1
UNIPROTKB|Q567R9 - symbol:CIP29 "CIP29 protein" species:9... 146 2.5e-10 1
UNIPROTKB|Q2TBX1 - symbol:CIP29 "Uncharacterized protein"... 145 3.2e-10 1
UNIPROTKB|H0YHG0 - symbol:H0YHG0 "Uncharacterized protein... 148 1.5e-09 1
RGD|1305692 - symbol:Sarnp "SAP domain containing ribonuc... 142 2.0e-09 1
UNIPROTKB|H9L0M1 - symbol:SARNP "Uncharacterized protein"... 140 2.6e-09 1
UNIPROTKB|H9L222 - symbol:SARNP "Uncharacterized protein"... 140 5.8e-09 1
UNIPROTKB|F8VZQ9 - symbol:SARNP "SAP domain-containing ri... 137 2.4e-08 1
ZFIN|ZDB-GENE-050522-161 - symbol:zgc:109957 "zgc:109957"... 133 7.4e-08 1
UNIPROTKB|E1BEF1 - symbol:E1BEF1 "Uncharacterized protein... 120 7.7e-07 1
POMBASE|SPCC31H12.03c - symbol:SPCC31H12.03c "RNA binding... 129 7.9e-07 1
WB|WBGene00021813 - symbol:Y53G8AR.6 species:6239 "Caenor... 110 0.00025 1
>TAIR|locus:2151271 [details] [associations]
symbol:MOS11 "AT5G02770" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL162973 GO:GO:0016973
UniGene:At.23648 UniGene:At.69718 EMBL:AF378893 EMBL:AY050475
EMBL:AK221715 IPI:IPI00543064 PIR:T48298 RefSeq:NP_195897.1
STRING:Q9LZ08 PaxDb:Q9LZ08 PRIDE:Q9LZ08 EnsemblPlants:AT5G02770.1
GeneID:831253 KEGG:ath:AT5G02770 TAIR:At5g02770 eggNOG:NOG331815
HOGENOM:HOG000153182 InParanoid:Q9LZ08 OMA:ARFGKET PhylomeDB:Q9LZ08
ProtClustDB:CLSN2687365 Genevestigator:Q9LZ08 Uniprot:Q9LZ08
Length = 214
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 96/215 (44%), Positives = 122/215 (56%)
Query: 1 MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTA 60
MA + EK+ AT + S NPK V E + D+ V+ + + K
Sbjct: 1 MATNGEKVT--ATVVNGGGLSTGENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEE 58
Query: 61 VTITAVSPV----SGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGT--GSKT 114
+ SGD V D QKKIRRAERFG+ V+++EEEKRN+RAERFGT +
Sbjct: 59 TDSNGIGSTAGVDSGDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVV 118
Query: 115 QGSEVSKTSEELKRKARAERFGLPVPSSVS---EEEAKRKARLARFAPYPKTDSVEEDKR 171
GSE +K +EELKRKARA+RFG+P +S + EEEAK+KARLARF K DS EE+KR
Sbjct: 119 NGSEGTKKAEELKRKARADRFGVPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKR 178
Query: 172 KARALRFXXXXXX-XXXQVNGKGNIEK-AAITGEA 204
KARALRF + K I K AA++G A
Sbjct: 179 KARALRFSKEASADASSDLPEKQIIGKEAAVSGSA 213
>UNIPROTKB|P82979 [details] [associations]
symbol:SARNP "SAP domain-containing ribonucleoprotein"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR003034
Pfam:PF02037 PROSITE:PS50800 SMART:SM00513 GO:GO:0005634
GO:GO:0006417 GO:GO:0006355 GO:GO:0003677 EMBL:CH471054
GO:GO:0006351 GO:GO:0003676 GO:GO:0003723 Gene3D:1.10.720.30
EMBL:AJ409089 EMBL:AF486281 EMBL:AF161434 EMBL:AK290508
EMBL:BC007099 IPI:IPI00014938 PIR:JC7830 RefSeq:NP_149073.1
UniGene:Hs.505676 PDB:2DO1 PDBsum:2DO1 ProteinModelPortal:P82979
SMR:P82979 IntAct:P82979 STRING:P82979 PhosphoSite:P82979
DMDM:18202440 PaxDb:P82979 PRIDE:P82979 DNASU:84324
Ensembl:ENST00000336133 Ensembl:ENST00000546604 GeneID:84324
KEGG:hsa:84324 UCSC:uc001sht.3 CTD:84324 GeneCards:GC12M056146
HGNC:HGNC:24432 HPA:HPA030902 HPA:HPA030903 MIM:610049
neXtProt:NX_P82979 PharmGKB:PA165513309 eggNOG:NOG290157
HOGENOM:HOG000013054 InParanoid:P82979 OrthoDB:EOG41RPWD
ChiTaRS:SARNP EvolutionaryTrace:P82979 GenomeRNAi:84324
NextBio:74056 ArrayExpress:P82979 Bgee:P82979 Genevestigator:P82979
GermOnline:ENSG00000205323 Uniprot:P82979
Length = 210
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 60/170 (35%), Positives = 81/170 (47%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ + + VK+ KT V + A V + T
Sbjct: 46 AEEEANEEDVLGDETEEE----ETKPIELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 114 (45.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>UNIPROTKB|F1PVE3 [details] [associations]
symbol:SARNP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00390000002944 OMA:KGNKQDL EMBL:AAEX03006913
Ensembl:ENSCAFT00000000120 Uniprot:F1PVE3
Length = 210
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 59/170 (34%), Positives = 81/170 (47%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ P + VK+ KT T V ++ + T
Sbjct: 46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKTVDVATEKKVVKITSE-IPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S ++G S +K L K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVSSKGLSSDAKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 120 (47.3 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 33/96 (34%), Positives = 54/96 (56%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ + +S DA + + K RA+RFG+ V + SE+ EK
Sbjct: 115 SLESKKAARAARFGISSVSSKGLSSDAKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>UNIPROTKB|F1SPJ5 [details] [associations]
symbol:SARNP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00390000002944
OMA:KGNKQDL EMBL:CU606916 Ensembl:ENSSSCT00000000387 Uniprot:F1SPJ5
Length = 210
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 60/170 (35%), Positives = 81/170 (47%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ P + VK+ KT V + A V + T
Sbjct: 46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKT-VDVAAEKKVVKITSEMPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S ++G S +K L K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 114 (45.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 115 SLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>UNIPROTKB|Q567R9 [details] [associations]
symbol:CIP29 "CIP29 protein" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] GO:GO:0005634 UniGene:Hs.505676
HGNC:HGNC:24432 EMBL:AC023055 EMBL:AC073487 EMBL:BC093051
IPI:IPI01015600 STRING:Q567R9 PRIDE:Q567R9 Ensembl:ENST00000444631
HOVERGEN:HBG051887 ArrayExpress:Q567R9 Bgee:Q567R9 Uniprot:Q567R9
Length = 150
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 55/140 (39%), Positives = 70/140 (50%)
Query: 50 VKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFG 109
VK+ KT V + A V + T++ +RAERF +PV + E K+ RA RFG
Sbjct: 12 VKEEEPPEKT-VDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFG 68
Query: 110 TGS-KTQG-SEVSKTSEEL-KRKARAERFGLPVPS--SVSEEEAKRKARLARF------A 158
S T+G S +K L K K RA+RFGL V S SE++ K K R RF A
Sbjct: 69 ISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSA 128
Query: 159 PYPKTDSVEEDKRKARALRF 178
T+ E KRK RA RF
Sbjct: 129 GTGTTEDTEAKKRK-RAERF 147
Score = 114 (45.2 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 55 SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 114
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 115 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 149
>UNIPROTKB|Q2TBX1 [details] [associations]
symbol:CIP29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
GO:GO:0003676 Gene3D:1.10.720.30 CTD:84324 eggNOG:NOG290157
HOGENOM:HOG000013054 OrthoDB:EOG41RPWD GeneTree:ENSGT00390000002944
OMA:KGNKQDL HOVERGEN:HBG051887 EMBL:DAAA02013539 EMBL:DAAA02013538
EMBL:BC109532 IPI:IPI00697070 RefSeq:NP_001036119.1
UniGene:Bt.56898 SMR:Q2TBX1 STRING:Q2TBX1
Ensembl:ENSBTAT00000027539 GeneID:732539 KEGG:bta:732539
InParanoid:Q2TBX1 NextBio:20902657 Uniprot:Q2TBX1
Length = 210
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 58/170 (34%), Positives = 77/170 (45%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ P + VK+ KT V + A V + T
Sbjct: 46 AEEEANEEDVLGDETEEEEP----KPLELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTG---SKTQGSEVSKTSEELKRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG SK S+ K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISPVPSKGLSSDTKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 113 (44.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 115 SLESKKAARAARFGISPVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>UNIPROTKB|H0YHG0 [details] [associations]
symbol:H0YHG0 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR003034 Pfam:PF02037
PROSITE:PS50800 SMART:SM00513 InterPro:IPR001623 Pfam:PF00226
GO:GO:0006457 GO:GO:0005730 GO:GO:0003676 Gene3D:1.10.720.30
Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565
PROSITE:PS50076 EMBL:AC023055 EMBL:AC073487 IntAct:H0YHG0
Ensembl:ENST00000546837 Uniprot:H0YHG0
Length = 523
Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 60/170 (35%), Positives = 81/170 (47%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ + + VK+ KT V + A V + T
Sbjct: 359 AEEEANEEDVLGDETEEE----ETKPIELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 413
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA+RFG
Sbjct: 414 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFG 471
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 472 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 520
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 428 SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 487
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 488 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 522
>RGD|1305692 [details] [associations]
symbol:Sarnp "SAP domain containing ribonucleoprotein"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=ISO] [GO:0001078 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in negative
regulation of transcription" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0050733 "RS domain binding"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
RGD:1305692 GO:GO:0005634 GO:GO:0006417 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.720.30 CTD:84324
eggNOG:NOG290157 HOGENOM:HOG000013054 OrthoDB:EOG41RPWD
EMBL:BC100070 IPI:IPI00365946 RefSeq:NP_001028242.1 UniGene:Rn.1506
ProteinModelPortal:Q498U4 SMR:Q498U4 STRING:Q498U4 PRIDE:Q498U4
Ensembl:ENSRNOT00000009155 GeneID:362819 KEGG:rno:362819
UCSC:RGD:1305692 GeneTree:ENSGT00390000002944 InParanoid:Q498U4
OMA:KGNKQDL NextBio:681377 Genevestigator:Q498U4
GermOnline:ENSRNOG00000030520 Uniprot:Q498U4
Length = 210
Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 59/170 (34%), Positives = 80/170 (47%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ P + VK+ K V + + V + T
Sbjct: 46 AEEEANEEDVLGDETEEEEP----KPIELPVKEEEPPEKV-VDMASEKKVVKITSGIPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
L V S SE++ K K R RF A T+ E KRK RA RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 116 (45.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + SE+ EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>UNIPROTKB|H9L0M1 [details] [associations]
symbol:SARNP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00390000002944 EMBL:AADN02031522
Ensembl:ENSGALT00000023589 Uniprot:H9L0M1
Length = 199
Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 56/171 (32%), Positives = 82/171 (47%)
Query: 20 ASAEGNPKNNVGP-MDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTD 78
A E N ++ +G ++ E+ A+ + E D T + ++ ++
Sbjct: 35 AEEEANEEDVLGEEIEEEEQKPAEPPTKVEEPPVKSPDVSTEKKVVKITSE------ISQ 88
Query: 79 TQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERF 135
++ +RAERF +PV + E K+ RA RFG + T+G S SK + + K K RA+RF
Sbjct: 89 MERMQKRAERFNVPVSL--ESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRF 146
Query: 136 GLPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
GL V S SEE+ K K R RF A T+ E KRK RA RF
Sbjct: 147 GLNVSSLSKKSEEDEKLKKRKERFGIVTSSAGAGATEDTEAKKRK-RAERF 196
Score = 119 (46.9 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ + + +S D+ + K RA+RFG+ V + SEE EK
Sbjct: 104 SLESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRFGLNVSSLSKKSEEDEKL 163
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 164 KKRKERFGIVTSSAGAGATEDTEAKKRK-RAERFGI 198
>UNIPROTKB|H9L222 [details] [associations]
symbol:SARNP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00390000002944 OMA:KGNKQDL EMBL:AADN02031522
Ensembl:ENSGALT00000035736 Uniprot:H9L222
Length = 210
Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 56/171 (32%), Positives = 82/171 (47%)
Query: 20 ASAEGNPKNNVGP-MDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTD 78
A E N ++ +G ++ E+ A+ + E D T + ++ ++
Sbjct: 46 AEEEANEEDVLGEEIEEEEQKPAEPPTKVEEPPVKSPDVSTEKKVVKITSE------ISQ 99
Query: 79 TQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERF 135
++ +RAERF +PV + E K+ RA RFG + T+G S SK + + K K RA+RF
Sbjct: 100 MERMQKRAERFNVPVSL--ESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRF 157
Query: 136 GLPVPS--SVSEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
GL V S SEE+ K K R RF A T+ E KRK RA RF
Sbjct: 158 GLNVSSLSKKSEEDEKLKKRKERFGIVTSSAGAGATEDTEAKKRK-RAERF 207
Score = 119 (46.9 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV----QMSEE-EKR 101
++E KK ++ + + +S D+ + K RA+RFG+ V + SEE EK
Sbjct: 115 SLESKKAARAARFGLATVSTKGLSADSKPTVNMDKLKERAQRFGLNVSSLSKKSEEDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGAGATEDTEAKKRK-RAERFGI 209
>UNIPROTKB|F8VZQ9 [details] [associations]
symbol:SARNP "SAP domain-containing ribonucleoprotein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR003034
Pfam:PF02037 PROSITE:PS50800 SMART:SM00513 GO:GO:0005634
GO:GO:0003676 Gene3D:1.10.720.30 HGNC:HGNC:24432 ChiTaRS:SARNP
OMA:KGNKQDL EMBL:AC023055 EMBL:AC073487 IPI:IPI01022436
ProteinModelPortal:F8VZQ9 SMR:F8VZQ9 Ensembl:ENST00000552080
ArrayExpress:F8VZQ9 Bgee:F8VZQ9 Uniprot:F8VZQ9
Length = 213
Score = 137 (53.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 50/143 (34%), Positives = 70/143 (48%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ + + VK+ KT V + A V + T
Sbjct: 46 AEEEANEEDVLGDETEEE----ETKPIELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFG 158
Query: 137 LPVPS--SVSEEEAKRKARLARF 157
L V S SE++ K K R RF
Sbjct: 159 LNVSSISRKSEDDEKLKKRKERF 181
>ZFIN|ZDB-GENE-050522-161 [details] [associations]
symbol:zgc:109957 "zgc:109957" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 ZFIN:ZDB-GENE-050522-161 GO:GO:0003676
Gene3D:1.10.720.30 eggNOG:NOG290157 HOGENOM:HOG000013054
OrthoDB:EOG41RPWD HOVERGEN:HBG051887 EMBL:BC095082 IPI:IPI00486277
RefSeq:NP_001019578.1 UniGene:Dr.45781 ProteinModelPortal:Q504C3
SMR:Q504C3 GeneID:554106 KEGG:dre:554106 InParanoid:Q504C3
NextBio:20880673 Uniprot:Q504C3
Length = 204
Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 48/142 (33%), Positives = 74/142 (52%)
Query: 51 KKNGNDSKTAVTITAVSP----VSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAE 106
K+ D K ++ T + P V + +V D + + +RAERF +P ++ + K+ RA
Sbjct: 64 KEESTDKKEELSPTGMEPEKKLVKLNPPVVADERLQ-KRAERFNVP--LTGDNKKAARAA 120
Query: 107 RFG-TGSKTQGSEVSKTSEELK-RKARAERFGLPVPSSVS---EEEAKRKARLARFAPYP 161
RFG T ++ +KT+ +++ K RAERFG+ V SSVS E++ K K R RF
Sbjct: 121 RFGVTAPESSKGASTKTNVDVEVLKKRAERFGMNV-SSVSKKVEDDEKLKKRKERFGIVT 179
Query: 162 KTDSV-----EEDKRKARALRF 178
S E K++ RA RF
Sbjct: 180 SASSSGGGDDSEAKKRKRAERF 201
>UNIPROTKB|E1BEF1 [details] [associations]
symbol:E1BEF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
GO:GO:0003676 Gene3D:1.10.720.30 GeneTree:ENSGT00390000002944
EMBL:DAAA02007228 IPI:IPI00825325 Ensembl:ENSBTAT00000046016
ArrayExpress:E1BEF1 Uniprot:E1BEF1
Length = 168
Score = 120 (47.3 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 43/130 (33%), Positives = 61/130 (46%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A E N ++ +G E+ P + VK+ KT V + A V + T
Sbjct: 46 AEEEANEEDVLGDETEEEEP----KPLELPVKEEEPPEKT-VDVAAEKKVVKITSEIPQT 100
Query: 80 QKKIRRAERFGMPVQMSEEEKRNTRAERFGTG---SKTQGSEVSKTSEELKRKARAERFG 136
++ +RAERF +PV + E K+ RA RFG SK S+ K K RA+RFG
Sbjct: 101 ERMQKRAERFNVPVSL--ESKKAARAARFGISPVPSKGLSSDTKPMVNLDKLKERAQRFG 158
Query: 137 LPVPSSVSEE 146
L V SS+S +
Sbjct: 159 LNV-SSISRK 167
>POMBASE|SPCC31H12.03c [details] [associations]
symbol:SPCC31H12.03c "RNA binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=ISO] InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800
SMART:SM00513 PomBase:SPCC31H12.03c GO:GO:0005634 EMBL:CU329672
GO:GO:0003676 Gene3D:1.10.720.30 GO:GO:0016973 eggNOG:NOG290157
OrthoDB:EOG4RNFK1 EMBL:U73337 PIR:T41291 RefSeq:NP_587896.1
ProteinModelPortal:O74871 PRIDE:O74871 EnsemblFungi:SPCC31H12.03c.1
GeneID:2538932 KEGG:spo:SPCC31H12.03c OMA:DMENDTI NextBio:20800109
Uniprot:O74871
Length = 245
Score = 129 (50.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 49/183 (26%), Positives = 81/183 (44%)
Query: 1 MAADAEKLATVATTTDNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTA 60
++ D K A + +A A+A K N + E + + ++ A E ++ +SK +
Sbjct: 73 ISTDVNKPAEPESKETSAPAAAVEIEKENESIISKETSQAPETSTGAEEHQETTEESKQS 132
Query: 61 VTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFG-----TGSKTQ 115
V+ SP D+ + +K I+RA+RFG+PV E+ K+ RA RFG S +
Sbjct: 133 VSNEVSSP-----DVAKEQEKLIQRAKRFGIPVD-DEQIKKAARAARFGIQQPLASSNNK 186
Query: 116 GSEVSKTSEELKRKARAERFGLPVPSSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARA 175
SK + +R P S +KRK+ + D +E +K + RA
Sbjct: 187 NHNQSKNPQNRSNSRSKQRNKNAPPKSAP---SKRKSNIL-------DDPIEAEKARKRA 236
Query: 176 LRF 178
RF
Sbjct: 237 ERF 239
>WB|WBGene00021813 [details] [associations]
symbol:Y53G8AR.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003034 Pfam:PF02037 PROSITE:PS50800 SMART:SM00513
GO:GO:0009792 GO:GO:0003676 Gene3D:1.10.720.30 HOGENOM:HOG000013054
GeneTree:ENSGT00390000002944 EMBL:FO081803 RefSeq:NP_497687.1
ProteinModelPortal:Q9N3G0 SMR:Q9N3G0 PaxDb:Q9N3G0
EnsemblMetazoa:Y53G8AR.6 GeneID:175432 KEGG:cel:CELE_Y53G8AR.6
UCSC:Y53G8AR.6 CTD:175432 WormBase:Y53G8AR.6 eggNOG:KOG4259
InParanoid:Q9N3G0 OMA:DSAGNKP NextBio:888134 Uniprot:Q9N3G0
Length = 253
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 49/176 (27%), Positives = 78/176 (44%)
Query: 16 DNAKASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADL 75
D S +G ++ + E+ + ++ + K A I PV+ + DL
Sbjct: 84 DKLLGSVDGAEEHKTDKSEGEEKHEVHLIDKKID-EVTAETDKRARAIRFGLPVTAE-DL 141
Query: 76 VTDTQKKIRRAERFGMPV---QMSEEEKRNTRAERFGTGSKTQGSEVSKTSEELKRKARA 132
+D K R A+RF +P +++ + + +RAERFG KT ++ K ARA
Sbjct: 142 GSDGAKAAR-AKRFDLPEDSKRLTSNDAKASRAERFGITPKTPAADD-------KLAARA 193
Query: 133 ERFGLPVPSSVSEEEAKR----KARLARFAPYPKT-----DSVE-EDKRKARALRF 178
RFG+PV + S +K + + A+ A K D E E K+KAR RF
Sbjct: 194 ARFGIPVGGAASASASKNAPNSEGKAAKLAARAKRFGGEIDDEEMEAKKKARMERF 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.304 0.121 0.316 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 208 199 0.00085 111 3 10 23 0.48 33
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 523 (56 KB)
Total size of DFA: 161 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.33u 0.08s 33.41t Elapsed: 00:00:01
Total cpu time: 33.34u 0.08s 33.42t Elapsed: 00:00:01
Start: Fri May 10 22:16:40 2013 End: Fri May 10 22:16:41 2013