Query 028476
Match_columns 208
No_of_seqs 130 out of 285
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4259 Putative nucleic acid- 99.8 1.4E-19 3E-24 158.6 10.0 127 52-183 106-259 (260)
2 KOG4259 Putative nucleic acid- 99.6 9E-15 1.9E-19 128.5 7.6 86 74-162 149-259 (260)
3 KOG1861 Leucine permease trans 26.0 45 0.00097 33.3 2.0 24 163-186 229-252 (540)
4 PF06884 DUF1264: Protein of u 14.1 1.5E+02 0.0033 25.7 2.4 12 127-138 146-157 (171)
5 PF15178 TOM_sub5: Mitochondri 12.4 2.1E+02 0.0045 20.2 2.3 18 158-176 6-23 (51)
6 PF02042 RWP-RK: RWP-RK domain 12.1 1.2E+02 0.0027 21.2 1.1 11 128-138 32-42 (52)
7 PF10642 Tom5: Mitochondrial i 8.9 3.3E+02 0.0072 18.9 2.4 19 89-107 2-21 (49)
8 KOG1861 Leucine permease trans 7.8 2.4E+02 0.0052 28.4 1.7 13 145-157 232-244 (540)
9 PF05673 DUF815: Protein of un 6.7 4.6E+02 0.0099 23.9 2.8 9 84-92 180-188 (249)
10 PF04081 DNA_pol_delta_4: DNA 6.7 3.2E+02 0.007 22.5 1.7 15 99-113 86-100 (124)
No 1
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.4e-19 Score=158.58 Aligned_cols=127 Identities=35% Similarity=0.407 Sum_probs=79.2
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCChHHHHHHHHh---hhCCCCCCCH---HHHHHHHHhhhCCCCCCCC-------C-
Q 028476 52 KNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAE---RFGMPVQMSE---EEKRNTRAERFGTGSKTQG-------S- 117 (208)
Q Consensus 52 k~~~~~kk~vkIts~~~~~~~~~~lSd~EKk~~RAe---RFGip~~~se---~eKkk~RAeRFG~~~~~~~-------s- 117 (208)
+....++++|+|+++.-. .....+.....|++ ||++|+++.+ ++++..||+||||+..... +
T Consensus 106 k~~~~Eks~v~~tstgk~----~E~paet~~~srae~~~rf~~Pvvae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas 181 (260)
T KOG4259|consen 106 KIISKEKSQVPETSTGKE----AEEPAETTEESRAEVSNRFSSPVVAEEKTAQEKLAARAKRFGIPVDDTQIKSADNKAS 181 (260)
T ss_pred hhhhhccccccccccccc----cccchhhhhhhhcccccccCCCcccccccchHHHHHHHHhcCCCCchHHHHhhccchh
Confidence 334457888888875311 12233444555555 5555554432 2555556666655532210 0
Q ss_pred -------CcccchHHHHHHHHHhhhCCCCCCC--cc---hHHHHHHHhhhhcCCCCCCCchHHHHH-HHHHhccCCCCC
Q 028476 118 -------EVSKTSEELKRKARAERFGLPVPSS--VS---EEEAKRKARLARFAPYPKTDSVEEDKR-KARALRFSKTSS 183 (208)
Q Consensus 118 -------~~~k~~eeeKlKkRAERFG~~~s~~--~~---eeeeKkKkRaERFG~~~~~d~deEaKk-kkRAeRFG~~~s 183 (208)
.+......+++|+||+|||+++++. .. +-..|+++|++|||. .-.+...|+|| ++|+||||...+
T Consensus 182 ~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~Sr~s~~de~~~kl~arkkRfgg-titde~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 182 SAANFGNKIQQPLASDKLKNRAQRFGPQVRSNSRSSQRDENAPKLSARKKRFGG-TITDEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhhhcCCcccchhhhHHHHHHHHhcCCCCCcccccCccccccchhhhhHHhcCC-CCCCchhhHHHHHHHHHHhcccCC
Confidence 0112245679999999999999864 11 223599999999993 34567788888 999999998765
No 2
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=9e-15 Score=128.49 Aligned_cols=86 Identities=36% Similarity=0.520 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHhhhCCCCCC-----------------------CHHHHHHHHHhhhCCCCCCCCCCcccc-hHHHHHH
Q 028476 74 DLVTDTQKKIRRAERFGMPVQM-----------------------SEEEKRNTRAERFGTGSKTQGSEVSKT-SEELKRK 129 (208)
Q Consensus 74 ~~lSd~EKk~~RAeRFGip~~~-----------------------se~eKkk~RAeRFG~~~~~~~s~~~k~-~eeeKlK 129 (208)
-+.+.++++.+||+|||||+.. -..++++.||+|||+.++.. +..++. ...-+|+
T Consensus 149 e~k~a~e~laaRAkRFgIp~d~t~i~sadnKas~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~-Sr~s~~de~~~kl~ 227 (260)
T KOG4259|consen 149 EEKTAQEKLAARAKRFGIPVDDTQIKSADNKASSAANFGNKIQQPLASDKLKNRAQRFGPQVRSN-SRSSQRDENAPKLS 227 (260)
T ss_pred ccccchHHHHHHHHhcCCCCchHHHHhhccchhhhhhcCCcccchhhhHHHHHHHHhcCCCCCcc-cccCccccccchhh
Confidence 4556778999999999999642 13789999999999986532 222221 1224899
Q ss_pred HHHhhhCCCCCCCcchHHHHH-HHhhhhcCCCCC
Q 028476 130 ARAERFGLPVPSSVSEEEAKR-KARLARFAPYPK 162 (208)
Q Consensus 130 kRAERFG~~~s~~~~eeeeKk-KkRaERFG~~~~ 162 (208)
+|++|||...- ....|.|| ++|+||||+.++
T Consensus 228 arkkRfggtit--de~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 228 ARKKRFGGTIT--DEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhHHhcCCCCC--CchhhHHHHHHHHHHhcccCC
Confidence 99999993322 23566677 999999998653
No 3
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=26.02 E-value=45 Score=33.34 Aligned_cols=24 Identities=50% Similarity=0.566 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHhccCCCCCCcc
Q 028476 163 TDSVEEDKRKARALRFSKTSSSSV 186 (208)
Q Consensus 163 ~d~deEaKkkkRAeRFG~~~s~s~ 186 (208)
...|++++++.||+||....+.+.
T Consensus 229 ~~~d~e~rr~~Ra~RF~~~~s~s~ 252 (540)
T KOG1861|consen 229 AGSDEEARRKRRARRFSQGGSRST 252 (540)
T ss_pred cCchHHHHHHHHHHHHhhcccccc
Confidence 367888999999999987766554
No 4
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=14.07 E-value=1.5e+02 Score=25.67 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=7.0
Q ss_pred HHHHHHhhhCCC
Q 028476 127 KRKARAERFGLP 138 (208)
Q Consensus 127 KlKkRAERFG~~ 138 (208)
-.+.|=+|||+.
T Consensus 146 lv~~RD~r~gv~ 157 (171)
T PF06884_consen 146 LVKERDERFGVD 157 (171)
T ss_pred HHHHHHHhcCCC
Confidence 355566666665
No 5
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=12.35 E-value=2.1e+02 Score=20.20 Aligned_cols=18 Identities=44% Similarity=0.377 Sum_probs=11.4
Q ss_pred CCCCCCCchHHHHHHHHHh
Q 028476 158 APYPKTDSVEEDKRKARAL 176 (208)
Q Consensus 158 G~~~~~d~deEaKkkkRAe 176 (208)
|.+++.|++|+ |++.|.+
T Consensus 6 gl~pk~DPeE~-k~kmR~d 23 (51)
T PF15178_consen 6 GLGPKMDPEEM-KRKMRED 23 (51)
T ss_pred cCCCCCCHHHH-HHHHHHH
Confidence 55567777654 6666754
No 6
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=12.09 E-value=1.2e+02 Score=21.19 Aligned_cols=11 Identities=45% Similarity=0.899 Sum_probs=6.2
Q ss_pred HHHHHhhhCCC
Q 028476 128 RKARAERFGLP 138 (208)
Q Consensus 128 lKkRAERFG~~ 138 (208)
+|++.-++||.
T Consensus 32 LKr~CR~~GI~ 42 (52)
T PF02042_consen 32 LKRRCRRLGIP 42 (52)
T ss_pred HHHHHHHcCCC
Confidence 45555566654
No 7
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=8.94 E-value=3.3e+02 Score=18.92 Aligned_cols=19 Identities=47% Similarity=0.597 Sum_probs=11.5
Q ss_pred hCCC-CCCCHHHHHHHHHhh
Q 028476 89 FGMP-VQMSEEEKRNTRAER 107 (208)
Q Consensus 89 FGip-~~~se~eKkk~RAeR 107 (208)
||.+ ..+|+++++...++-
T Consensus 2 Fgg~~~qpS~eE~k~~e~~A 21 (49)
T PF10642_consen 2 FGGPPPQPSEEEIKAAEAQA 21 (49)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 6663 456777776666553
No 8
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=7.78 E-value=2.4e+02 Score=28.43 Aligned_cols=13 Identities=62% Similarity=0.946 Sum_probs=7.2
Q ss_pred hHHHHHHHhhhhc
Q 028476 145 EEEAKRKARLARF 157 (208)
Q Consensus 145 eeeeKkKkRaERF 157 (208)
+++++++.|+.||
T Consensus 232 d~e~rr~~Ra~RF 244 (540)
T KOG1861|consen 232 DEEARRKRRARRF 244 (540)
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555555
No 9
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=6.70 E-value=4.6e+02 Score=23.86 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=4.4
Q ss_pred HHHhhhCCC
Q 028476 84 RRAERFGMP 92 (208)
Q Consensus 84 ~RAeRFGip 92 (208)
.=+.|||+-
T Consensus 180 SLsDRFGL~ 188 (249)
T PF05673_consen 180 SLSDRFGLW 188 (249)
T ss_pred hHHHhCCcE
Confidence 334555554
No 10
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=6.70 E-value=3.2e+02 Score=22.50 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.0
Q ss_pred HHHHHHHhhhCCCCC
Q 028476 99 EKRNTRAERFGTGSK 113 (208)
Q Consensus 99 eKkk~RAeRFG~~~~ 113 (208)
-++=.||++|||+.|
T Consensus 86 l~RW~RA~~lgL~PP 100 (124)
T PF04081_consen 86 LERWERAKRLGLNPP 100 (124)
T ss_pred HHHHHHHHHcCCCCC
Confidence 456689999999865
Done!