Query 028476
Match_columns 208
No_of_seqs 130 out of 285
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lsj_B DNA polymerase kappa; R 6.4 1.7E+02 0.0058 17.2 0.0 6 129-134 12-17 (26)
2 3zs9_C Golgi to ER traffic pro 4.3 4.6E+02 0.016 16.6 1.9 9 75-83 3-11 (38)
3 3ogk_Q JAZ1 incomplete degron 3.7 4.9E+02 0.017 14.6 1.5 10 128-137 9-18 (22)
4 3cra_A Protein MAZG; tandem-re 3.4 9.5E+02 0.032 20.6 3.8 16 125-140 147-162 (265)
5 2iel_A Hypothetical protein TT 3.4 3.2E+02 0.011 21.7 0.7 11 83-93 120-130 (138)
6 2esy_A LUNG surfactant protein 3.1 3.1E+02 0.011 16.7 0.3 7 87-93 11-17 (32)
7 1ibx_B Chimera of IGG binding 2.9 1.6E+03 0.054 17.8 4.3 27 85-112 73-99 (145)
8 1tc3_C Protein (TC3 transposas 2.8 3.6E+02 0.012 14.9 0.3 7 105-111 28-34 (51)
9 1m5i_A APC protein; coiled-coi 2.7 6.8E+02 0.023 19.6 1.9 6 133-138 77-82 (125)
10 1t5i_A C_terminal domain of A 2.6 5.6E+02 0.019 19.0 1.3 14 97-110 114-127 (172)
No 1
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=6.36 E-value=1.7e+02 Score=17.25 Aligned_cols=6 Identities=67% Similarity=0.938 Sum_probs=3.5
Q ss_pred HHHHhh
Q 028476 129 KARAER 134 (208)
Q Consensus 129 KkRAER 134 (208)
|||+||
T Consensus 12 KKRser 17 (26)
T 2lsj_B 12 KKRSER 17 (26)
Confidence 456665
No 2
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=4.26 E-value=4.6e+02 Score=16.64 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.1
Q ss_pred CCChHHHHH
Q 028476 75 LVTDTQKKI 83 (208)
Q Consensus 75 ~lSd~EKk~ 83 (208)
+||+.|+..
T Consensus 3 els~~ekaR 11 (38)
T 3zs9_C 3 ELTEAEKRR 11 (38)
T ss_dssp -CCHHHHHH
T ss_pred ccCHHHHHH
Confidence 455555433
No 3
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=3.68 E-value=4.9e+02 Score=14.63 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=4.8
Q ss_pred HHHHHhhhCC
Q 028476 128 RKARAERFGL 137 (208)
Q Consensus 128 lKkRAERFG~ 137 (208)
+.||.+|++.
T Consensus 9 leKRk~R~~~ 18 (22)
T 3ogk_Q 9 LEKRKDRVTS 18 (26)
T ss_pred HHHHHHHhhc
Confidence 3455555543
No 4
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=3.43 E-value=9.5e+02 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhCCCCC
Q 028476 125 ELKRKARAERFGLPVP 140 (208)
Q Consensus 125 eeKlKkRAERFG~~~s 140 (208)
..|+.+||.|.|..-+
T Consensus 147 A~kiq~raa~vGfdw~ 162 (265)
T 3cra_A 147 AQKIQKRCANVGFDWT 162 (265)
T ss_dssp HHHHHHHHHTTTCSCS
T ss_pred HHHHHHHHHhcCCCCC
Confidence 3456666666666543
No 5
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=3.37 E-value=3.2e+02 Score=21.70 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.7
Q ss_pred HHHHhhhCCCC
Q 028476 83 IRRAERFGMPV 93 (208)
Q Consensus 83 ~~RAeRFGip~ 93 (208)
..||.+||+|+
T Consensus 120 asrAr~~gvPV 130 (138)
T 2iel_A 120 HTQAERFGLPV 130 (138)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHhcCCCE
Confidence 45888899986
No 6
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=3.06 E-value=3.1e+02 Score=16.74 Aligned_cols=7 Identities=57% Similarity=1.317 Sum_probs=4.5
Q ss_pred hhhCCCC
Q 028476 87 ERFGMPV 93 (208)
Q Consensus 87 eRFGip~ 93 (208)
-|||||-
T Consensus 11 grf~IPc 17 (32)
T 2esy_A 11 GRFGIPF 17 (32)
T ss_dssp SSSSCCS
T ss_pred ccccCcc
Confidence 3677764
No 7
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=2.86 E-value=1.6e+03 Score=17.81 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=17.1
Q ss_pred HHhhhCCCCCCCHHHHHHHHHhhhCCCC
Q 028476 85 RAERFGMPVQMSEEEKRNTRAERFGTGS 112 (208)
Q Consensus 85 RAeRFGip~~~se~eKkk~RAeRFG~~~ 112 (208)
|-.|+||.+. |=.|=+.+=+.+|+++.
T Consensus 73 Rs~KkGV~A~-SL~EL~~K~~~kL~l~~ 99 (145)
T 1ibx_B 73 SREQHGVAAS-CLEDLRSKACDILAIDK 99 (145)
T ss_dssp CCSBCCCCCS-SHHHHHHHHHHHHTCSC
T ss_pred CCeEEeEEcC-CHHHHHHHHHHHhcCCC
Confidence 6689998753 22343444458999964
No 8
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=2.80 E-value=3.6e+02 Score=14.87 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=5.3
Q ss_pred HhhhCCC
Q 028476 105 AERFGTG 111 (208)
Q Consensus 105 AeRFG~~ 111 (208)
|+.||++
T Consensus 28 A~~lgis 34 (51)
T 1tc3_C 28 SRKISRS 34 (51)
T ss_dssp HHHHTCC
T ss_pred HHHHCcC
Confidence 6778875
No 9
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=2.72 E-value=6.8e+02 Score=19.58 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.9
Q ss_pred hhhCCC
Q 028476 133 ERFGLP 138 (208)
Q Consensus 133 ERFG~~ 138 (208)
||||..
T Consensus 77 Er~Gt~ 82 (125)
T 1m5i_A 77 EQLGTC 82 (125)
T ss_dssp HHHCCS
T ss_pred HHhccc
Confidence 455544
No 10
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=2.57 E-value=5.6e+02 Score=19.05 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhCC
Q 028476 97 EEEKRNTRAERFGT 110 (208)
Q Consensus 97 e~eKkk~RAeRFG~ 110 (208)
.-..+.-|+-|+|-
T Consensus 114 ~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 114 TYLHRVARAGRFGT 127 (172)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHhcccccCCC
Confidence 34566667777764
Done!