Query 028476
Match_columns 208
No_of_seqs 130 out of 285
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 20:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028476.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028476hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okga3 d.26.1.3 (A:302-373) 3 10.5 49 0.0035 22.0 1.4 16 20-35 8-23 (72)
2 d2iela1 c.26.2.4 (A:2-135) Hyp 8.7 46 0.0033 24.7 0.7 11 83-93 119-129 (134)
3 d1kjqa3 d.142.1.2 (A:113-318) 6.2 1.9E+02 0.014 19.6 3.2 32 80-111 3-39 (206)
4 d2gz4a1 a.211.1.1 (A:6-205) Hy 5.8 1.7E+02 0.013 22.4 2.9 22 77-98 103-126 (200)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 5.1 86 0.0063 20.1 0.5 32 103-138 30-62 (66)
6 d1o57a1 a.4.5.40 (A:2-74) N-te 4.7 74 0.0054 21.2 -0.1 9 199-207 60-68 (73)
7 d1z6ra2 c.55.1.10 (A:82-210) M 4.5 1.4E+02 0.01 19.3 1.4 29 82-110 98-127 (129)
8 d1woqa1 c.55.1.10 (A:11-139) I 4.4 1.4E+02 0.0099 19.4 1.2 26 85-110 100-126 (129)
9 d2lhba_ a.1.1.2 (A:) Lamprey g 3.6 3.1E+02 0.023 18.5 2.8 19 68-86 3-21 (149)
10 d1rfma_ c.122.1.1 (A:) L-sulfo 3.5 2.4E+02 0.018 22.6 2.3 24 88-111 315-338 (344)
No 1
>d1okga3 d.26.1.3 (A:302-373) 3-mercaptopyruvate sulfurtransferase, C-terminal domain {Leishmania major [TaxId: 5664]}
Probab=10.52 E-value=49 Score=21.98 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=13.9
Q ss_pred CcCCCCCCCCCCCCCC
Q 028476 20 ASAEGNPKNNVGPMDL 35 (208)
Q Consensus 20 ~~~~~~~~~~~~~~~~ 35 (208)
.+..+||+-+||.+++
T Consensus 8 p~LgdNpKA~ld~~Tl 23 (72)
T d1okga3 8 PSLGDNPKANLDTMTL 23 (72)
T ss_dssp CCCTTSCBCCTTTCCE
T ss_pred cccCCCchhcccceEE
Confidence 3578999999999987
No 2
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus thermophilus [TaxId: 274]}
Probab=8.70 E-value=46 Score=24.72 Aligned_cols=11 Identities=64% Similarity=1.126 Sum_probs=8.8
Q ss_pred HHHHhhhCCCC
Q 028476 83 IRRAERFGMPV 93 (208)
Q Consensus 83 ~~RAeRFGip~ 93 (208)
-.||.|||+|+
T Consensus 119 ~~raRr~~lPV 129 (134)
T d2iela1 119 HTQAERFGLPV 129 (134)
T ss_dssp HHHGGGGSSCE
T ss_pred HHHHHHcCCCe
Confidence 45788999996
No 3
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}
Probab=6.17 E-value=1.9e+02 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=20.1
Q ss_pred HHHHHHH-hhhCCCCCC----CHHHHHHHHHhhhCCC
Q 028476 80 QKKIRRA-ERFGMPVQM----SEEEKRNTRAERFGTG 111 (208)
Q Consensus 80 EKk~~RA-eRFGip~~~----se~eKkk~RAeRFG~~ 111 (208)
||..+.| +..|||++- ...+-...=++++|.+
T Consensus 3 ~~~rrla~~~~Gip~p~~~~v~s~~dl~~~~~~ig~P 39 (206)
T d1kjqa3 3 EGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYP 39 (206)
T ss_dssp HHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCCCCCeEECCHHHHHHHHHHhCCC
Confidence 3443335 679999763 2344455668889976
No 4
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.77 E-value=1.7e+02 Score=22.37 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=13.7
Q ss_pred ChHHHHHHHH--hhhCCCCCCCHH
Q 028476 77 TDTQKKIRRA--ERFGMPVQMSEE 98 (208)
Q Consensus 77 Sd~EKk~~RA--eRFGip~~~se~ 98 (208)
-+.|.+...| .|||+|..++..
T Consensus 103 ~~~E~rl~~aI~~rFGLp~~lp~~ 126 (200)
T d2gz4a1 103 KTVEKRLEAAVHLRFGLPPHASRE 126 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHH
Confidence 3455555544 688888776654
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.07 E-value=86 Score=20.14 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHhhhCCCCCCCCCCcccc-hHHHHHHHHHhhhCCC
Q 028476 103 TRAERFGTGSKTQGSEVSKT-SEELKRKARAERFGLP 138 (208)
Q Consensus 103 ~RAeRFG~~~~~~~s~~~k~-~eeeKlKkRAERFG~~ 138 (208)
.=|..||++. ++++.- -..++...-.++||..
T Consensus 30 eIA~~fGv~~----STvs~IlKnK~kil~~~~~~g~~ 62 (66)
T d1hlva1 30 EIARRFNIPP----STLSTILKNKRAILASERKYGVA 62 (66)
T ss_dssp HHHHHHTCCH----HHHHHHHHTHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCh----hHHHHHHHHHHHHHHHHHHcCcc
Confidence 3477888863 111110 1233455566777754
No 6
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=4.69 E-value=74 Score=21.22 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=5.0
Q ss_pred cccccCCCC
Q 028476 199 AITGEADGV 207 (208)
Q Consensus 199 ~~~~~~~~~ 207 (208)
.|+|-||||
T Consensus 60 Ti~GAaGGv 68 (73)
T d1o57a1 60 TVPGAAGGV 68 (73)
T ss_dssp EECSTTCEE
T ss_pred EecCCCCCe
Confidence 455556654
No 7
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=4.52 E-value=1.4e+02 Score=19.32 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHh-hhCC
Q 028476 82 KIRRAERFGMPVQMSEEEKRNTRAE-RFGT 110 (208)
Q Consensus 82 k~~RAeRFGip~~~se~eKkk~RAe-RFG~ 110 (208)
+..=.++||+|+.+...-.-...|| +||.
T Consensus 98 ~~~l~~~~~~pV~~~NDa~a~alaE~~~G~ 127 (129)
T d1z6ra2 98 GEALEQHTGVPVYIQHDISAWTMAEALFGA 127 (129)
T ss_dssp HHHHHHHHSSCEEEEEHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCEEEEehHHHHHHHHHhhCC
Confidence 3344568899887766666777776 3554
No 8
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=4.37 E-value=1.4e+02 Score=19.38 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=18.2
Q ss_pred HHhhhCCCCCCCHHHHHHHHHhh-hCC
Q 028476 85 RAERFGMPVQMSEEEKRNTRAER-FGT 110 (208)
Q Consensus 85 RAeRFGip~~~se~eKkk~RAeR-FG~ 110 (208)
=.++||+|+.+..+-....-||+ ||.
T Consensus 100 l~~~~~~pv~i~NDan~aalgE~~~Ga 126 (129)
T d1woqa1 100 LTARLGRPVEVINDADAAGLAEARYGA 126 (129)
T ss_dssp HHHHHTSCEEEEEHHHHHHHHHHHHST
T ss_pred HHHhcCCcEEEEEhHHHHHHHHHhhcc
Confidence 34678888877777777777774 664
No 9
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=3.63 E-value=3.1e+02 Score=18.48 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCCCCCCCCChHHHHHHHH
Q 028476 68 PVSGDADLVTDTQKKIRRA 86 (208)
Q Consensus 68 ~~~~~~~~lSd~EKk~~RA 86 (208)
.++....+||+.|+...|.
T Consensus 3 ~~~~~~~~Ls~~e~~~I~~ 21 (149)
T d2lhba_ 3 VDTGSVAPLSAAEKTKIRS 21 (149)
T ss_dssp CSSSCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHH
Confidence 3445557899998877764
No 10
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.53 E-value=2.4e+02 Score=22.64 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=13.4
Q ss_pred hhCCCCCCCHHHHHHHHHhhhCCC
Q 028476 88 RFGMPVQMSEEEKRNTRAERFGTG 111 (208)
Q Consensus 88 RFGip~~~se~eKkk~RAeRFG~~ 111 (208)
+-||++...--++++.=|++||++
T Consensus 315 ~~GI~i~~~~~~~l~~la~~~gv~ 338 (344)
T d1rfma_ 315 KDGFEIDKNLYNQLKEICNELGLN 338 (344)
T ss_dssp GGCEECCHHHHHHHHHHHHHHTCC
T ss_pred cCCCCcCHHHHHHHHHHHHHcCCC
Confidence 346665444455555666666665
Done!