Query 028477
Match_columns 208
No_of_seqs 103 out of 467
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 1.2E-41 2.7E-46 277.9 12.6 146 41-186 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 7.7E-37 1.7E-41 247.0 13.7 141 34-174 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.5 2.8E-06 6.1E-11 66.2 11.8 139 37-180 3-143 (144)
4 PF12606 RELT: Tumour necrosis 26.3 1E+02 0.0022 20.8 3.2 32 167-198 4-35 (50)
5 PF10856 DUF2678: Protein of u 25.7 1.2E+02 0.0026 24.1 4.0 79 1-97 1-79 (118)
6 PF07584 BatA: Aerotolerance r 23.8 81 0.0018 22.3 2.6 23 34-56 53-75 (77)
7 PF05767 Pox_A14: Poxvirus vir 21.4 3.4E+02 0.0073 20.6 5.5 31 119-149 15-46 (92)
8 PF05702 Herpes_UL49_5: Herpes 21.3 2.2E+02 0.0048 21.9 4.6 49 138-186 36-84 (98)
9 COG3763 Uncharacterized protei 20.6 1.4E+02 0.0029 21.7 3.1 31 167-197 5-42 (71)
10 PF15128 T_cell_tran_alt: T-ce 18.0 3.6E+02 0.0078 20.4 5.0 41 159-200 21-66 (92)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=1.2e-41 Score=277.86 Aligned_cols=146 Identities=32% Similarity=0.568 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccc------ceeeccchhHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCcceEe
Q 028477 41 PIARLVPMALCVAALVLMLKNSETSDFG------SLSYSDLGAFRYLVHANGICAGYSLLSAIIAA--MPRPSTMSQAWT 112 (208)
Q Consensus 41 lvLRv~a~~~slaA~vvM~t~~qt~~~~------~~~fs~~~af~ylVaan~I~~~Ysllql~~~~--i~r~~~~~~~~~ 112 (208)
++||+++++++++|+++|+||+|+..+. +.||+|+++|+|+|++|+|+|+|+++|+++.. +.++....+.|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 4799999999999999999999998753 47999999999999999999999999998643 344433456899
Q ss_pred eeehhHHHHHHHHHHhhHHHHHHHHHHhCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028477 113 FFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 186 (208)
Q Consensus 113 ~f~~Dqv~ayLL~SAasAAaaia~l~~~G~~~~~W~~vC~~~~~FC~~~~~SvalsflA~v~l~l~s~iS~~~L 186 (208)
+|++||+++||++||++||++++|++|+||++.+|+++|+++++||+|+.+|++++|+|++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=7.7e-37 Score=246.98 Aligned_cols=141 Identities=40% Similarity=0.709 Sum_probs=129.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCCcccc----cceeeccchhHHHHHHHHHHHHHHHHHHHHHHH--hcC--CC
Q 028477 34 AALRTAEPIARLVPMALCVAALVLMLKNSETSDF----GSLSYSDLGAFRYLVHANGICAGYSLLSAIIAA--MPR--PS 105 (208)
Q Consensus 34 ~~~~~~~lvLRv~a~~~slaA~vvM~t~~qt~~~----~~~~fs~~~af~ylVaan~I~~~Ysllql~~~~--i~r--~~ 105 (208)
|..+..+++||+++++++++|+++|++|+||.++ .+.+|+|+++|+|+|++|+|+|+|+++|++... +.+ .+
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~ 80 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR 80 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 4568899999999999999999999999998765 478999999999999999999999999998543 322 24
Q ss_pred CCcceEeeeehhHHHHHHHHHHhhHHHHHHHHHHhCCcccccccccccccchhhhHHHHHHHHHHHHHH
Q 028477 106 TMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVAC 174 (208)
Q Consensus 106 ~~~~~~~~f~~Dqv~ayLL~SAasAAaaia~l~~~G~~~~~W~~vC~~~~~FC~~~~~SvalsflA~v~ 174 (208)
.+...|++|++||+++||++||++||+++++++++|+++.+|+++|+.+++||+|+++|++++|+|+++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 567789999999999999999999999999999999999999999999999999999999999999974
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.49 E-value=2.8e-06 Score=66.21 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=98.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCcccccceeeccchhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCcceEeee
Q 028477 37 RTAEPIARLVPMALCVAALVLMLKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMP--RPSTMSQAWTFF 114 (208)
Q Consensus 37 ~~~~lvLRv~a~~~slaA~vvM~t~~qt~~~~~~~fs~~~af~ylVaan~I~~~Ysllql~~~~i~--r~~~~~~~~~~f 114 (208)
+....+||+++++++++.+.+++....+.. .......+...|.+.+.++...+++..++..... .....+..+.++
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS--QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWPLVEF 80 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 456789999999999999999998874211 1235566788999999999999988877754432 223344455789
Q ss_pred ehhHHHHHHHHHHhhHHHHHHHHHHhCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 028477 115 FLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSL 180 (208)
Q Consensus 115 ~~Dqv~ayLL~SAasAAaaia~l~~~G~~~~~W~~vC~~~~~FC~~~~~SvalsflA~v~l~l~s~ 180 (208)
+.|.+++.+-+.+..+-+.-....+.+++ +...+...++-|+...++.+++|++++++..+.+
T Consensus 81 ~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 81 IFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877665422111111111 2233444567799999999999999999988765
No 4
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.34 E-value=1e+02 Score=20.82 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 028477 167 ITFVAVACYVVLSLISSYKLFSKYDAPIACSG 198 (208)
Q Consensus 167 lsflA~v~l~l~s~iS~~~L~~~~~~~~~~~~ 198 (208)
+..+.+++.+.+-.++..++.|.|+=+.+-+.
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 55678888888999999999999988876655
No 5
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=25.73 E-value=1.2e+02 Score=24.12 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=35.9
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccceeeccchhHHH
Q 028477 1 MEKSNNIGGAVAASSPLPMMGSRAHQEINEDGNAALRTAEPIARLVPMALCVAALVLMLKNSETSDFGSLSYSDLGAFRY 80 (208)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvLRv~a~~~slaA~vvM~t~~qt~~~~~~~fs~~~af~y 80 (208)
||.-+.-+|.-.+.-.+|--||+..|+ ++.+++.=.++.++.+++++.-.-=.|.. -.+.-|
T Consensus 1 ~~~~~~~~~g~~g~~~rPLFGE~~~r~---------riinliiG~vT~l~VLvtii~afvf~~~~---------p~p~~i 62 (118)
T PF10856_consen 1 MDDFTTRTYGTSGKDNRPLFGETSARD---------RIINLIIGAVTSLFVLVTIISAFVFPQDP---------PKPLHI 62 (118)
T ss_pred CCcccccccCCCCcCCCcccCCCCccc---------EEEEeehHHHHHHHHHHHHhheEEecCCC---------CCceEE
Confidence 554444444333444455555554444 44455555555555555443322111110 122345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028477 81 LVHANGICAGYSLLSAI 97 (208)
Q Consensus 81 lVaan~I~~~Ysllql~ 97 (208)
+++++.+.+.-+...++
T Consensus 63 ffavcI~l~~~s~~lLI 79 (118)
T PF10856_consen 63 FFAVCILLICISAILLI 79 (118)
T ss_pred ehHHHHHHHHHHHHhhe
Confidence 56666666555544433
No 6
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=23.75 E-value=81 Score=22.27 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 028477 34 AALRTAEPIARLVPMALCVAALV 56 (208)
Q Consensus 34 ~~~~~~~lvLRv~a~~~slaA~v 56 (208)
|..+...++||++++++.+++++
T Consensus 53 ~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 53 RLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHc
Confidence 35677889999999998887763
No 7
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.44 E-value=3.4e+02 Score=20.64 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhCCcc-ccccc
Q 028477 119 LLTYLILAAGAVSTEVLYLERKGDLA-ITWSA 149 (208)
Q Consensus 119 v~ayLL~SAasAAaaia~l~~~G~~~-~~W~~ 149 (208)
++..+++=+++-=+|--...|+++.. ..|..
T Consensus 15 li~GiiLL~~aCIfAfidfsK~~~~~~~~wRa 46 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKNTKPTDYTWRA 46 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCchhHHHH
Confidence 33444444445556777788888544 35754
No 8
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=21.27 E-value=2.2e+02 Score=21.86 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=33.4
Q ss_pred HHhCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028477 138 ERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 186 (208)
Q Consensus 138 ~~~G~~~~~W~~vC~~~~~FC~~~~~SvalsflA~v~l~l~s~iS~~~L 186 (208)
.+.++.+.-|.+-|+.-|-.-+.-.++.++=+++.+...+..+.-+|+.
T Consensus 36 ~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~a 84 (98)
T PF05702_consen 36 AREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRA 84 (98)
T ss_pred hHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555679999998887667777776666666666655556666664
No 9
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.58 E-value=1.4e+02 Score=21.73 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-------CCCCCCC
Q 028477 167 ITFVAVACYVVLSLISSYKLFSKY-------DAPIACS 197 (208)
Q Consensus 167 lsflA~v~l~l~s~iS~~~L~~~~-------~~~~~~~ 197 (208)
+..+..+...+.-++.+|-+.|++ .||+.++
T Consensus 5 lail~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~ 42 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEE 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHH
Confidence 333444444455555666666654 7777654
No 10
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=17.96 E-value=3.6e+02 Score=20.35 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCCCCCCCCc
Q 028477 159 HKAIASVIITFVAVACYVVLSLISSYKLFS-----KYDAPIACSGKN 200 (208)
Q Consensus 159 ~~~~~SvalsflA~v~l~l~s~iS~~~L~~-----~~~~~~~~~~~~ 200 (208)
+-..+++-.-++.++.+.++.+.=+|+.+- +|+.|... |+|
T Consensus 21 ~Dmrv~ifkllL~WlvlsLl~I~lAWk~yG~TV~dmyyRqG~g-gqN 66 (92)
T PF15128_consen 21 NDMRVQIFKLLLGWLVLSLLAIHLAWKVYGNTVNDMYYRQGTG-GQN 66 (92)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeCCCCC-ccC
Confidence 456778888999999999999999998765 56666443 444
Done!