Query 028477
Match_columns 208
No_of_seqs 103 out of 467
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3un6_A Hypothetical protein sa 22.1 19 0.00064 30.2 0.0 12 20-31 1-12 (341)
2 2krk_A 26S protease regulatory 18.9 45 0.0015 23.1 1.4 25 20-44 1-25 (86)
3 1v54_J Cytochrome C oxidase po 18.2 1.3E+02 0.0045 19.8 3.6 30 73-102 27-56 (59)
4 2y69_J Cytochrome C oxidase po 11.5 2.2E+02 0.0077 19.9 3.4 31 72-102 47-77 (80)
5 3rlb_A THIT; S-component, ECF 10.0 6.6E+02 0.022 20.0 10.2 31 163-193 119-149 (192)
6 1xhn_A CREG, cellular represso 6.6 1.8E+02 0.0061 22.3 1.4 39 20-62 1-39 (184)
7 1n0w_B Breast cancer type 2 su 6.3 1.3E+02 0.0043 18.0 0.2 10 195-204 10-19 (35)
8 2knc_A Integrin alpha-IIB; tra 5.9 6.3E+02 0.021 16.3 5.1 34 166-199 16-51 (54)
9 2lg4_A Aurelin; antimicrobial 7.0 1.5E+02 0.0051 18.3 0.0 14 148-161 9-22 (40)
10 1jb0_X Photosystem I subunit P 4.7 4.3E+02 0.015 15.6 1.9 14 80-93 18-31 (35)
No 1
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=22.14 E-value=19 Score=30.23 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCCCccccccc
Q 028477 20 MGSRAHQEINED 31 (208)
Q Consensus 20 ~~~~~~~~~~~~ 31 (208)
||+.||||-||.
T Consensus 1 ~~~~~~~~~~~~ 12 (341)
T 3un6_A 1 MGSSHHHHHHEN 12 (341)
T ss_dssp ------------
T ss_pred CCCccccccchh
Confidence 576666666655
No 2
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=18.92 E-value=45 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.9
Q ss_pred CCCCCccccccccchhhhhhhHHHH
Q 028477 20 MGSRAHQEINEDGNAALRTAEPIAR 44 (208)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~lvLR 44 (208)
||-.+||+-+|+...+..+..+.||
T Consensus 1 ~~~~~~~~~~Pd~~~R~~IL~~~l~ 25 (86)
T 2krk_A 1 MGHHHHHHSHPNEEARLDILKIHSR 25 (86)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHc
Confidence 6778899999998777777777666
No 3
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=18.19 E-value=1.3e+02 Score=19.79 Aligned_cols=30 Identities=23% Similarity=0.089 Sum_probs=22.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028477 73 SDLGAFRYLVHANGICAGYSLLSAIIAAMP 102 (208)
Q Consensus 73 s~~~af~ylVaan~I~~~Ysllql~~~~i~ 102 (208)
+|.--|++..+..+++.+|++..+...+..
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~~~p 56 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWASFP 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667888889999999998887765443
No 4
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.47 E-value=2.2e+02 Score=19.89 Aligned_cols=31 Identities=23% Similarity=0.062 Sum_probs=23.1
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028477 72 YSDLGAFRYLVHANGICAGYSLLSAIIAAMP 102 (208)
Q Consensus 72 fs~~~af~ylVaan~I~~~Ysllql~~~~i~ 102 (208)
=+|.--|.+..+..+++.+|++..+...+..
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~~~~p 77 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGWASFP 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455678888888999999998887754443
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=10.02 E-value=6.6e+02 Score=19.95 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 028477 163 ASVIITFVAVACYVVLSLISSYKLFSKYDAP 193 (208)
Q Consensus 163 ~SvalsflA~v~l~l~s~iS~~~L~~~~~~~ 193 (208)
..+.-.+++.+...+...+|.+-++..|-|+
T Consensus 119 ~~~lg~~ig~~~r~~~~~isgvvff~~yaP~ 149 (192)
T 3rlb_A 119 PVLLGTFVAVLLKYFFHFIAGIIFWSQYAWK 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 3556678888889999999999888777653
No 6
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1
Probab=6.62 E-value=1.8e+02 Score=22.34 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=16.0
Q ss_pred CCCCCccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 028477 20 MGSRAHQEINEDGNAALRTAEPIARLVPMALCVAALVLMLKNS 62 (208)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~lvLRv~a~~~slaA~vvM~t~~ 62 (208)
||+.+||+-+.++.+.....+.+.+++. -....+++|-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ar~ll~----~~~~g~LaTi~ 39 (184)
T 1xhn_A 1 MGSSHHHHHHGSLPPREDAARVARFVTH----VSDWGALATIS 39 (184)
T ss_dssp ----------CCCCCTTCHHHHHHHHHH----HCSEEEEEEEC
T ss_pred CCcccccccCCCCCCChHHHHHHHHHHH----hCCEEEEEecc
Confidence 6888888888887777666665555432 22335555554
No 7
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=6.28 E-value=1.3e+02 Score=18.02 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=7.7
Q ss_pred CCCCCceeee
Q 028477 195 ACSGKNIEVA 204 (208)
Q Consensus 195 ~~~~~~~~~~ 204 (208)
+-|||+|+++
T Consensus 10 TASGKkv~Ia 19 (35)
T 1n0w_B 10 TASGKKVKIA 19 (35)
T ss_dssp ETTSCBCCCC
T ss_pred ecCCcEEEeh
Confidence 5688988875
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.91 E-value=6.3e+02 Score=16.25 Aligned_cols=34 Identities=9% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhcCCCCCCCCC
Q 028477 166 IITFVAVACYVVLSLISSYK--LFSKYDAPIACSGK 199 (208)
Q Consensus 166 alsflA~v~l~l~s~iS~~~--L~~~~~~~~~~~~~ 199 (208)
+++.++.+.+..+.++.-|+ .|+|-.+|..++.+
T Consensus 16 i~svl~GLllL~li~~~LwK~GFFkR~~~~~~e~~~ 51 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDE 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCCCcchhhh
Confidence 35555555555555555563 57777777665443
No 9
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=7.04 E-value=1.5e+02 Score=18.26 Aligned_cols=14 Identities=36% Similarity=1.013 Sum_probs=11.6
Q ss_pred ccccccccchhhhH
Q 028477 148 SAVCGSFGGFCHKA 161 (208)
Q Consensus 148 ~~vC~~~~~FC~~~ 161 (208)
+.+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 44799999999986
No 10
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.74 E-value=4.3e+02 Score=15.63 Aligned_cols=14 Identities=29% Similarity=0.391 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 028477 80 YLVHANGICAGYSL 93 (208)
Q Consensus 80 ylVaan~I~~~Ysl 93 (208)
.++++|-++++|=+
T Consensus 18 llLaINflVAayYF 31 (35)
T 1jb0_X 18 LLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888887743
Done!