Query 028477
Match_columns 208
No_of_seqs 103 out of 467
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 20:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028477.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028477hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 4.7 2.6E+02 0.019 14.3 2.2 14 80-93 12-25 (29)
2 d1wm8a_ g.3.7.2 (A:) Neurotoxi 3.4 1.3E+02 0.0098 15.4 0.3 11 192-202 6-16 (28)
3 d1v54j_ f.23.4.1 (J:) Mitochon 3.3 5E+02 0.037 15.4 4.0 29 73-101 27-55 (58)
4 d1v54b2 f.17.2.1 (B:1-90) Mito 3.3 5.4E+02 0.039 15.9 3.6 23 181-203 41-63 (90)
5 d2p06a1 a.204.1.3 (A:1-84) Hyp 3.0 1.9E+02 0.014 18.1 0.9 23 101-123 22-44 (84)
6 d1ppje2 f.23.12.1 (E:1-69) Iro 2.8 5.2E+02 0.038 15.8 2.9 22 117-140 32-53 (69)
7 d1rh5a_ f.41.1.1 (A:) Preprote 2.6 1.2E+03 0.085 18.3 6.7 31 33-63 100-130 (422)
8 d1czsa_ b.18.1.2 (A:) C2 domai 2.6 4.3E+02 0.031 17.6 2.6 19 1-19 8-26 (160)
9 d1rrza_ a.7.10.1 (A:) Glycogen 2.4 1.5E+02 0.011 18.3 -0.3 19 143-163 40-58 (66)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.3 7.9E+02 0.058 15.4 7.5 77 112-193 31-107 (107)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.75 E-value=2.6e+02 Score=14.31 Aligned_cols=14 Identities=29% Similarity=0.391 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 028477 80 YLVHANGICAGYSL 93 (208)
Q Consensus 80 ylVaan~I~~~Ysl 93 (208)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677777777754
No 2
>d1wm8a_ g.3.7.2 (A:) Neurotoxin bmp03 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=3.43 E-value=1.3e+02 Score=15.38 Aligned_cols=11 Identities=45% Similarity=1.063 Sum_probs=7.8
Q ss_pred CCCCCCCCcee
Q 028477 192 APIACSGKNIE 202 (208)
Q Consensus 192 ~~~~~~~~~~~ 202 (208)
-|+-|+|||-.
T Consensus 6 cp~hckgk~a~ 16 (28)
T d1wm8a_ 6 CPMHCKGKNAN 16 (28)
T ss_dssp TTGGGCSSSCC
T ss_pred CcccccCcCCC
Confidence 36778888854
No 3
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.33 E-value=5e+02 Score=15.41 Aligned_cols=29 Identities=21% Similarity=0.005 Sum_probs=19.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028477 73 SDLGAFRYLVHANGICAGYSLLSAIIAAM 101 (208)
Q Consensus 73 s~~~af~ylVaan~I~~~Ysllql~~~~i 101 (208)
.|.--|+.-.+..+++.+|++..+...+.
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l~~a~~ 55 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCLGWASF 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455666777778888888887664433
No 4
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.30 E-value=5.4e+02 Score=15.95 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHhhhhcCCCCCCCCCceee
Q 028477 181 ISSYKLFSKYDAPIACSGKNIEV 203 (208)
Q Consensus 181 iS~~~L~~~~~~~~~~~~~~~~~ 203 (208)
+-.+.+.+++..+-..++..+|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~lEi 63 (90)
T d1v54b2 41 IISLMLTTKLTHTSTMDAQEVET 63 (90)
T ss_dssp HHHHHHSCSCCCCSCCCCTTHHH
T ss_pred HHHHHHhccccccccccccchhh
Confidence 34456667776676777777886
No 5
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.05 E-value=1.9e+02 Score=18.12 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=18.3
Q ss_pred hcCCCCCcceEeeeehhHHHHHH
Q 028477 101 MPRPSTMSQAWTFFFLDQLLTYL 123 (208)
Q Consensus 101 i~r~~~~~~~~~~f~~Dqv~ayL 123 (208)
++|++.+|+.|++|--..++.-|
T Consensus 22 vsrpgntprpwfdfseerllsrl 44 (84)
T d2p06a1 22 VSRPGNTPRPWFDFSEERLLSRL 44 (84)
T ss_dssp HTSTTCCSCHHHHSCHHHHHHHH
T ss_pred ccCCCCCCCCcccccHHHHHHHH
Confidence 35667889999999888877665
No 6
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.80 E-value=5.2e+02 Score=15.77 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHh
Q 028477 117 DQLLTYLILAAGAVSTEVLYLERK 140 (208)
Q Consensus 117 Dqv~ayLL~SAasAAaaia~l~~~ 140 (208)
.+.+.||+..+++.+. +|-+|+
T Consensus 32 Rk~fsYl~~g~~~v~~--ay~AK~ 53 (69)
T d1ppje2 32 RKGFSYLVTATTTVGV--AYAAKN 53 (69)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHH
T ss_pred hceehhhhhhhHHHHH--HHHHHH
Confidence 3789998777766643 344443
No 7
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.64 E-value=1.2e+03 Score=18.32 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=23.7
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 028477 33 NAALRTAEPIARLVPMALCVAALVLMLKNSE 63 (208)
Q Consensus 33 ~~~~~~~~lvLRv~a~~~slaA~vvM~t~~q 63 (208)
+.+.+..+-.-|.+++++++.-...++....
T Consensus 100 ~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~ 130 (422)
T d1rh5a_ 100 PENRALFQGCQKLLSIIMCFVEAVLFVGAGA 130 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3356677778899999999998888776544
No 8
>d1czsa_ b.18.1.2 (A:) C2 domain of factor V {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.63 E-value=4.3e+02 Score=17.64 Aligned_cols=19 Identities=26% Similarity=0.109 Sum_probs=15.2
Q ss_pred CCCCCCcccccccCCCCCC
Q 028477 1 MEKSNNIGGAVAASSPLPM 19 (208)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (208)
||...-.|-.++|+|..+.
T Consensus 8 me~g~I~d~~itASS~~~~ 26 (160)
T d1czsa_ 8 MENGKIENKQITASSFKKS 26 (160)
T ss_dssp TTTSCSCGGGEEESCCCBC
T ss_pred ccCCccchHhEEEeeECCC
Confidence 8887777888999987663
No 9
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=2.41 E-value=1.5e+02 Score=18.35 Aligned_cols=19 Identities=21% Similarity=0.791 Sum_probs=13.0
Q ss_pred cccccccccccccchhhhHHH
Q 028477 143 LAITWSAVCGSFGGFCHKAIA 163 (208)
Q Consensus 143 ~~~~W~~vC~~~~~FC~~~~~ 163 (208)
.+-.| .|..|.-||.++.-
T Consensus 40 e~r~W--Fc~Ry~~Yc~q~~q 58 (66)
T d1rrza_ 40 EHRTW--FCARYAWYCQQMMQ 58 (66)
T ss_dssp HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHH
Confidence 34456 68888888887653
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.29 E-value=7.9e+02 Score=15.44 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=46.1
Q ss_pred eeeehhHHHHHHHHHHhhHHHHHHHHHHhCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028477 112 TFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSKYD 191 (208)
Q Consensus 112 ~~f~~Dqv~ayLL~SAasAAaaia~l~~~G~~~~~W~~vC~~~~~FC~~~~~SvalsflA~v~l~l~s~iS~~~L~~~~~ 191 (208)
++..+|.++....+-...-...+.|..-+-..+.+ + ...+|.+....=++-..+=.+.+..+++-|...|+.+-.
T Consensus 31 i~~lh~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~--~---~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~mde 105 (107)
T d3ehbb2 31 QQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRAN--P---VPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQE 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTS--S---SCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--c---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777666555554444455555543222111 0 113455566677777888888888888888888877655
Q ss_pred CC
Q 028477 192 AP 193 (208)
Q Consensus 192 ~~ 193 (208)
+|
T Consensus 106 ~P 107 (107)
T d3ehbb2 106 MP 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 54
Done!