BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028478
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 243 bits (619), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/173 (67%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGK
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 243 bits (619), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/173 (67%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
++LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGK
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 241 bits (616), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/173 (67%), Positives = 135/173 (78%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEA-MNPYGRTKLFIEEICRDVHRSDSEW 59
M AHG KNLVFSSSATVYG P+ +P E P NPYG++K FIEE+ RD+ ++D W
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
+LLRYFNP GAH SG IGEDP+GIPNNLMP+V+QVA+GRR L VFG DY T+DGTGV
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 238
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLA GHIAAL KL + + GC +YNLGTG G SVL+MV A EKASGK
Sbjct: 239 RDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGK 290
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/180 (62%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWK 60
M K +VFSSSATVYG P+ P E FPL A NPYG+TKL E+I RDV +D W+
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWR 175
Query: 61 IILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVR 120
+ LRYFNPVGAH SG IGEDP GIPNNLMP+V QVAVG+ +L VFG+DY T DGTGVR
Sbjct: 176 VATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVR 235
Query: 121 DYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKVHIFALFC 180
DYIHV+DLA GHIAAL L+ V NLGTG+G SVLE+V AFEKASG+ + L
Sbjct: 236 DYIHVVDLARGHIAALDALERRDASLTV-NLGTGRGYSVLEVVRAFEKASGRAVPYELVA 294
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 216 bits (551), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSSSATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 127/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS ATVYG +P E FP +PYG++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/173 (58%), Positives = 128/173 (73%), Gaps = 2/173 (1%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPL-EAMNPYGRTKLFIEEICRDVHRSDSEW 59
M A KN +FSS+ATVYG +P E FP +P+G++KL +E+I D+ ++ +W
Sbjct: 111 MRAANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDW 170
Query: 60 KIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGV 119
I LLRYFNPVGAHPSG +GEDP+GIPNNLMP++ QVAVGRR L +FG DY T+DGTGV
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 120 RDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
RDYIHV+DLADGH+ A+ KL + K G +YNLG G G SVL++V AF KA GK
Sbjct: 231 RDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGK 282
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/179 (56%), Positives = 127/179 (70%), Gaps = 8/179 (4%)
Query: 1 MAAHGCKNLVFSSSATVYG----WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSD 56
M + VFSSSATVYG +P ++P EE PL NPYG TK IE I D++ SD
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 57 SE-WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKD 115
+ WK +LRYFNP+GAHPSG IGEDP GIPNNL+P++ QVAVGRR +L +FG DY ++D
Sbjct: 182 KKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241
Query: 116 GTGVRDYIHVIDLADGHIAALHKL---DDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG 171
GT +RDYIHV+DLA GHIAAL L ++ + C +NLG+GKG++V E+ AF KASG
Sbjct: 242 GTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASG 300
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 9 LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFN 68
+FSS+A YG V TEE N YG TKL IE++ + S + + RYFN
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLH-WYSQASNLRYKIFRYFN 171
Query: 69 PVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDL 128
GA P+G IGED R +L+P V QVA+G+R ++ +FG DY+T DGT +RDYIHV DL
Sbjct: 172 VAGATPNGIIGEDHRP-ETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 129 ADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKAS 170
H L L + + YNLG G G SV E+V A + +
Sbjct: 231 VAAHFLGLKDLQNGG-ESDFYNLGNGNGFSVKEIVDAVREVT 271
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 1 MAAHGCKNLVFSSSATVYGWP---KVVPCTEEFPLEAM----NPYGRTKLFIEEICRDVH 53
M H C ++FSSSA ++G P V E + A +PYG +KL E + RD
Sbjct: 131 MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCA 190
Query: 54 RSDSEWKIILLRYFNPVGAHPSGKIGEDPRG----IPNNLMPFVTQVAVGRR-------- 101
+ K I LRYFN GAH G IGE +G IP L ++ +A +R
Sbjct: 191 EAYG-IKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 102 --PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL---HKL--DDPKIGCEVYNLGTG 154
+ +FGTDY T DGT VRDY+HV DLA HI AL KL +D V+NLGT
Sbjct: 250 TDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS 309
Query: 155 KGTSVLEMVAAFEKASG 171
+G SV E++ K +G
Sbjct: 310 RGYSVREVIEVARKTTG 326
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 4 HGCKNLVFSSSA-TVYGW-PKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKI 61
+G + LVF+S+ +YG P+ E +P +PY +K E V+ K
Sbjct: 107 YGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYL-SVYGQSYGLKW 165
Query: 62 ILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRD 121
+ LRY N G +DP G + F +V G +T++ +G VRD
Sbjct: 166 VSLRYGNVYGPR------QDPHGEAGVVAIFAERVLKGL--PVTLYARKTPGDEGC-VRD 216
Query: 122 YIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKV 173
Y++V D+A+ H AL L+ +YN+GTG+G + E++ A +A+GK
Sbjct: 217 YVYVGDVAEAHALALFSLEG------IYNVGTGEGHTTREVLMAVAEAAGKA 262
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG +P E+ PL +PY +K+ +E + R+ ++ ++
Sbjct: 110 GVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
R+FN G P P+ L+P + + R EL V G DG RD+ +
Sbjct: 170 RFFNVYG----------PGERPDALVPRLCANLLTRN-ELPVEG------DGEQRRDFTY 212
Query: 125 VIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKVHI 175
+ D+ D + AL P V N G+G+ SV +++ + S +
Sbjct: 213 ITDVVD-KLVALANRPLPS----VVNFGSGQSLSVNDVIRILQATSPAAEV 258
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 100 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 158
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPE-LTVFGTDYSTKDGTGVRDYI 123
RY N VG PR + F+ ++ R P L V G DGT + Y+
Sbjct: 159 RYANVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYL 200
Query: 124 HVIDLADGHIAALHK---LDDPKIGCEVYNLGTGKGTSVLEMVA 164
+V D + +AA K +D P + V N+ + + ++VA
Sbjct: 201 YVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVA 244
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G + +VF+SS+TVYG V+P EE P + ++ YG K E +C R + + +
Sbjct: 104 GVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGV-RCLAV 162
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPE-LTVFGTDYSTKDGTGVRDYI 123
RY N VG PR + F+ ++ R P L V G DGT + Y+
Sbjct: 163 RYANVVG----------PRLRHGVIYDFIMKLR--RNPNVLEVLG------DGTQRKSYL 204
Query: 124 HVIDLADGHIAALHK---LDDPKIGCEVYNLGTGKGTSVLEMVA 164
+V D + +AA K +D P + V N+ + + ++VA
Sbjct: 205 YVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVA 248
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 2 AAHGCKNLVFSSSATVY--GWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEW 59
+A G + VF+SS VY P+ +P TE+ PL +PYG TKL EE+ R H+
Sbjct: 114 SAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVR-FHQRSGAM 172
Query: 60 KIILLRY 66
+ ++LR+
Sbjct: 173 ETVILRF 179
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 240
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEM 162
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 241 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNEL 283
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 149 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 207
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 208 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 253
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEM 162
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 254 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNEL 296
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 194
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 195 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 240
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEM 162
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 241 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNEL 283
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 4 HGCKN-----LVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSE 58
H KN +++S++ YG +P EE ++PY TK ++ EI V+
Sbjct: 130 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTK-YVNEIYAQVYARTYG 188
Query: 59 WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGT 117
+K I LRYFN G +DP G ++P T + G D Y DG
Sbjct: 189 FKTIGLRYFNVFGRR------QDPNGAYAAVIPKWTAAMLK--------GDDVYINGDGE 234
Query: 118 GVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEM 162
RD+ ++ ++ +I + D K +YN+ G T++ E+
Sbjct: 235 TSRDFCYIDNVIQMNILSALAKDSAK--DNIYNVAVGDRTTLNEL 277
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 1 MAAHGCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKL----FIEEICRDVHRSD 56
M G +VF+S++TVYG KV+P E++P ++ YG +KL IE C H D
Sbjct: 101 MRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYC---HTFD 157
Query: 57 SE-WKIILLRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRP-ELTVFGTDYSTK 114
+ W + R+ N +G + + + F+ ++ R P EL + G
Sbjct: 158 MQAW---IYRFANVIGRRSTHGV----------IYDFIMKLK--RNPEELEILG------ 196
Query: 115 DGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGT 153
+G + YI++ D D + L D ++ ++N+G+
Sbjct: 197 NGEQNKSYIYISDCVDAMLFGLRG--DERVN--IFNIGS 231
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 9 LVFSSSATVYG-WPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRYF 67
LV S+ VYG K TEE PL +PY +K + I +++ + +I+ R
Sbjct: 144 LVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKT-YQLPVIVTRCS 202
Query: 68 NPVGAHPSGKIGEDPRGIPNNLMPF-VTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVI 126
N G P P L+P VT G++ L ++G DG VRD++HV
Sbjct: 203 NNYG----------PYQYPEKLIPLXVTNALEGKK--LPLYG------DGLNVRDWLHVT 244
Query: 127 DLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKV 173
D LHK ++G EVYN+G + +E+V GK
Sbjct: 245 DHCSAIDVVLHK---GRVG-EVYNIGGNNEKTNVEVVEQIITLLGKT 287
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 7 KNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILLRY 66
++ +++S++ YG +P E+ + ++PY TK ++ E+ DV + I LRY
Sbjct: 146 QSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTK-YVNELYADVFSRCYGFSTIGLRY 204
Query: 67 FNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTD-YSTKDGTGVRDYIHV 125
FN G +DP G ++P T + G D Y DG RD+ ++
Sbjct: 205 FNVFGRR------QDPNGAYAAVIPKWTSSMIQ--------GDDVYINGDGETSRDFCYI 250
Query: 126 IDLADGH-IAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFE 167
+ + +AA LD +VYN+ G TS+ ++ A
Sbjct: 251 ENTVQANLLAATAGLDARN---QVYNIAVGGRTSLNQLFFALR 290
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG TE PLE +PY +K + + R HR+ + +
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDVRIT 176
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R N G P P L+P FVT + G L ++G DG VR+++
Sbjct: 177 RCCNNYG----------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVREWV 218
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTG 154
H D G IA + L + G E+Y++G G
Sbjct: 219 HTDDHCRG-IALV--LAGGRAG-EIYHIGGG 245
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 26/168 (15%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E +C + + ++ +
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG-VEVRV 172
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN G P + D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 173 ARIFNTFG--PRMHMN-DGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 217
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG 171
+V DL +G +A L + + V NLG + ++LE + G
Sbjct: 218 YVSDLVNGLVA----LMNSNVSSPV-NLGNPEEHTILEFAQLIKNLVG 260
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 9 LVFSSSATVYGWPKVVPCTEEF-----PLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
L+ +S++ VYG P+V P +E++ P+ Y K E C + + ++ +
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEG-VEVRV 194
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN G D R + N F+ Q G LTV+G+ G+ R +
Sbjct: 195 ARIFNTFGPRXHXN---DGRVVSN----FILQALQGE--PLTVYGS------GSQTRAFQ 239
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASG 171
+V DL +G +A L + + V NLG + ++LE + G
Sbjct: 240 YVSDLVNGLVA----LXNSNVSSPV-NLGNPEEHTILEFAQLIKNLVG 282
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 20/160 (12%)
Query: 6 CKNLVFSSSATVYGW--PKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIIL 63
C+ L SS YG P+ P +EE L M+PYG +K + + R ++ II
Sbjct: 119 CRILTIGSSEE-YGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYG-MDIIH 176
Query: 64 LRYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R FN +G P +G + + + + + ++ + G + +D T VRD +
Sbjct: 177 TRTFNHIG--PGQSLG----FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIV 230
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMV 163
L + K G +VYN+ +G GT + +++
Sbjct: 231 QAYWLLSQY---------GKTG-DVYNVCSGIGTRIQDVL 260
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G +V S+ VYG TE PLE +PY +K + + R HR+ + +
Sbjct: 118 GVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYG-LDVRIT 176
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYI 123
R N G P P L+P FVT + G L ++G DG VR+++
Sbjct: 177 RCCNNYG----------PYQHPEKLIPLFVTNLLDG--GTLPLYG------DGANVREWV 218
Query: 124 HVIDLADGHIAALHKLDDPKIGCEVYNLGTG 154
H D G IA + L + G E+Y++G G
Sbjct: 219 HTDDHCRG-IALV--LAGGRAG-EIYHIGGG 245
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 116 GTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
G RD+I V D+A+G IA D G VYN+ +GK TS+ ++ + +G
Sbjct: 254 GVATRDFIFVEDVANGLIACAA---DGTPGG-VYNIASGKETSIADLATKINEITGN 306
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 8 NLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHR 54
+VF+SS V+G P P +EF + YG K E + D R
Sbjct: 135 RVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSR 181
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 27/185 (14%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F S+ +Y P E + LE N PY K+ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPVGA-HPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQKAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 260
Query: 167 EKASG 171
K G
Sbjct: 261 AKVVG 265
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHR 54
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK 192
>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
Iterative Cs-Rosetta From Backbone Nmr Data
Length = 201
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 7 KNLVFSSSATVYGWPKVVPC--TEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
K L + ATV +PK+V C ++EF E + YG +L I+ R+ SE++ ++
Sbjct: 6 KALFVTCGATV-PFPKLVSCVLSDEFCQELIQ-YGFVRLIIQ-FGRNY---SSEFEHLVQ 59
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
G S KI D G + +V +L V G D+STK + +RDY
Sbjct: 60 ERG---GQRESQKIPIDQFGCGDTARQYVLM-----NGKLKVIGFDFSTKMQSIIRDYSD 111
Query: 125 VI--DLADGHIAALHKLDDPKIGC 146
++ G I +L+ P I C
Sbjct: 112 LVISHAGTGSILDSLRLNKPLIVC 135
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHR 54
+G K ++SSA +Y K + T + +P E + YG KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNK 192
>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
Of A Yeast N-Acetylglucosamine Transferase. Northeast
Structural Genomics Consortium Target Yg1
Length = 224
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 7 KNLVFSSSATVYGWPKVVPC--TEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
K L + ATV +PK+V C ++EF E + YG +L I+ R+ SE++ ++
Sbjct: 29 KALFVTCGATV-PFPKLVSCVLSDEFCQELIQ-YGFVRLIIQ-FGRNY---SSEFEHLVQ 82
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
G S KI D G + +V +L V G D+STK + +RDY
Sbjct: 83 ERG---GQRESQKIPIDQFGCGDTARQYVLMNG-----KLKVIGFDFSTKMQSIIRDYSD 134
Query: 125 VI--DLADGHIAALHKLDDPKIGC 146
++ G I +L+ P I C
Sbjct: 135 LVISHAGTGSILDSLRLNKPLIVC 158
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 5 GCKNLVFSSSATVYGWPKVVPCTEEFPLEAMNPYGRTKLFIEEICRDVHRSDSEWKIILL 64
G K L+ +A YG P VP + P YG +K E S+ ++ L
Sbjct: 127 GVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM-----MSDVPVVSL 181
Query: 65 RYFNPVGAHPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIH 124
R N G P IG P F ++ G++ F +D VRD++
Sbjct: 182 RLANVTG--PRLAIGPIPT--------FYKRLKAGQK----CFCSDT-------VRDFLD 220
Query: 125 VIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEM 162
+ D IA L + G V+N+ TG+G S+ E+
Sbjct: 221 MSDFL--AIADLSLQEGRPTG--VFNVSTGEGHSIKEV 254
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F S+ +Y P E + LE N PY K+ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPVGA-HPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQNAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 260
Query: 167 EKASG 171
K G
Sbjct: 261 AKVVG 265
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHR 54
+G K ++SSA +Y K + T + +P E + YG +L EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNK 192
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F S+ +Y P E + LE N PY ++ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIARIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPVGA-HPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQSAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 260
Query: 167 EKASG 171
K G
Sbjct: 261 AKVVG 265
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 4 HGCKNLVFSSSATVYGWPKVVPCT-------EEFPLEAMNPYGRTKLFIEEICRDVHR 54
+G K ++SSA +Y K + T + +P E + +G KL EE+C+ ++
Sbjct: 135 NGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK 192
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F S+ +Y P E + LE N PY K+ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPVGA-HPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQNAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ ++
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTI 260
Query: 167 EKASG 171
K G
Sbjct: 261 AKVVG 265
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 2 AAH--GCKNLVFSSSATVYGWPKVVPCTE----EFPLEAMN-PYGRTKLFIEEICRDVHR 54
AAH L+F ++ +Y P E + LE N PY K+ ++C +R
Sbjct: 93 AAHQNDVNKLLFLGASCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNR 152
Query: 55 S-DSEWKIIL-LRYFNPVGA-HPSGKIGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDY 111
+++ ++ + P HPS + IP L F + P++ V+G+
Sbjct: 153 QYGRDYRSVMPTNLYGPHDNFHPS-----NSHVIPALLRRF-HEATAQSAPDVVVWGS-- 204
Query: 112 STKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKGTSVLEMVAAF 166
GT +R+++HV D+A I + H+ L++ + N+GTG ++ E+
Sbjct: 205 ----GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 260
Query: 167 EKASG 171
K G
Sbjct: 261 AKVVG 265
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 82 PRGIPNNLMP-FVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLD 140
P P L+P + + ++G + + ++GT + +D V D++ I+L L K +
Sbjct: 184 PYQFPEKLIPKTIIRASLGLK--IPIYGTGKNVRDWLYVEDHVRAIEL------VLLKGE 235
Query: 141 DPKIGCEVYNLGTGKGTSVLEMVAAFEKASGK 172
E+YN+ G+ + LE+V + GK
Sbjct: 236 ----SREIYNISAGEEKTNLEVVKIILRLMGK 263
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 102 PELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL---HK--LDDPKIGCEVYNLGTGKG 156
P++ V+G+ GT +R+++HV D+A I + H+ L++ + N+GTG
Sbjct: 197 PDVVVWGS------GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVD 250
Query: 157 TSVLEMVAAFEKASG 171
++ E+ K G
Sbjct: 251 CTIRELAQTIAKVVG 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,888,613
Number of Sequences: 62578
Number of extensions: 307354
Number of successful extensions: 832
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 55
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)