Query 028479
Match_columns 208
No_of_seqs 144 out of 1396
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 20:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcpa_ b.47.1.3 (A:) Viral ca 40.7 7.2 0.00053 26.7 2.2 32 157-188 81-119 (149)
2 d1ep5a_ b.47.1.3 (A:) Viral ca 36.9 9.1 0.00067 26.3 2.3 32 157-188 87-125 (156)
3 d1wyka_ b.47.1.3 (A:) Viral ca 36.3 9.4 0.00069 26.1 2.3 32 157-188 83-121 (152)
4 d1ucra_ a.4.5.45 (A:) Dissimil 14.8 65 0.0047 19.3 2.8 25 92-116 39-65 (74)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 14.2 52 0.0038 20.5 2.5 12 196-207 46-57 (100)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 10.4 93 0.0067 15.5 2.1 12 186-197 7-18 (34)
7 d1cl4a_ g.40.1.1 (A:) Nucleoca 9.0 16 0.0012 18.5 -1.2 20 40-59 2-21 (32)
8 d1g25a_ g.44.1.1 (A:) TFIIH Ma 8.6 55 0.004 18.6 1.0 20 26-45 29-48 (65)
9 d2iuba2 f.17.3.1 (A:286-349) M 7.3 94 0.0068 17.5 1.6 21 188-208 44-64 (64)
10 d1j2oa2 g.39.1.3 (A:31-63) Rho 6.3 15 0.0011 18.5 -2.2 19 4-22 11-29 (33)
No 1
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=40.69 E-value=7.2 Score=26.68 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=20.4
Q ss_pred eEEEeccCCCCCCCCCCC-------CCCCCcEEEEeeHH
Q 028479 157 YARYWASGYYDLTVDSSH-------DDQVGKTVAIIVGV 188 (208)
Q Consensus 157 ~lRYe~~~F~~~~~~~~~-------~~~~~~~iaiv~~~ 188 (208)
.++|+.-.|--.....++ -+++|++++||+|.
T Consensus 81 avq~~~grft~p~g~g~~GDSGRpi~DN~GkVVaIVLGG 119 (149)
T d1vcpa_ 81 AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGG 119 (149)
T ss_dssp EEEEETTEEEEETTSCCTTCTTCEEECTTSCEEEEEEEE
T ss_pred eEEEeCCeEEeccccCCCCCCCCccCcCCCCEEEEEecC
Confidence 377887776543322111 26789999999873
No 2
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=36.86 E-value=9.1 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEeccCCCCCCCCCCC-------CCCCCcEEEEeeHH
Q 028479 157 YARYWASGYYDLTVDSSH-------DDQVGKTVAIIVGV 188 (208)
Q Consensus 157 ~lRYe~~~F~~~~~~~~~-------~~~~~~~iaiv~~~ 188 (208)
.++|+.-.|--.+...++ -+++|++++||+|.
T Consensus 87 avq~~~grftip~g~g~~GDSGRpi~DN~GkVVaIVLGG 125 (156)
T d1ep5a_ 87 AVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAIVLGG 125 (156)
T ss_dssp EEEEETTEEEEETTCCCTTCTTCEEECTTSCEEEEEEEE
T ss_pred eEEEeCCeEEeccCCCCCCCCCCccCcCCCcEEEEEecC
Confidence 477887777543322111 26789999999873
No 3
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=36.25 E-value=9.4 Score=26.08 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=20.2
Q ss_pred eEEEeccCCCCCCCCCCC-------CCCCCcEEEEeeHH
Q 028479 157 YARYWASGYYDLTVDSSH-------DDQVGKTVAIIVGV 188 (208)
Q Consensus 157 ~lRYe~~~F~~~~~~~~~-------~~~~~~~iaiv~~~ 188 (208)
.++|++-.|--.+...++ -+++|++++||+|.
T Consensus 83 avq~~~grftip~g~g~~GDSGRpi~DN~GrVVaIVLGG 121 (152)
T d1wyka_ 83 AVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGG 121 (152)
T ss_dssp EEEEETTEEEEETTTCCTTCTTCEEECTTSCEEEEEEEE
T ss_pred eEEEeCCeEEecccCCCCCCCCCccCcCCCcEEEEEecC
Confidence 477887776543322111 26789999999873
No 4
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=14.76 E-value=65 Score=19.29 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhh--cccccCCcceEEE
Q 028479 92 RDDVLADLQTAV--SFKVSSSGFVEGF 116 (208)
Q Consensus 92 ~~~ll~~l~~~a--~~~~~~~~~vYgL 116 (208)
+..+++.|..+. .|-.+++.++|||
T Consensus 39 vKK~~~~lV~e~~L~ywSSGSTTMYgl 65 (74)
T d1ucra_ 39 VKKILTALVNDEVLEYWSSGSTTMYGL 65 (74)
T ss_dssp HHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhccceEEEEcCCCcEEecc
Confidence 456677776654 4556667899998
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.20 E-value=52 Score=20.54 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhc
Q 028479 196 IVFLSICRRAME 207 (208)
Q Consensus 196 ~~~~~~~~~~~~ 207 (208)
+++...+|.|+|
T Consensus 46 ~l~~~~~~~r~~ 57 (100)
T d3dtub2 46 LILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHBTT
T ss_pred HHHHHhhhhhcc
Confidence 333444555544
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.40 E-value=93 Score=15.54 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=5.8
Q ss_pred eHHHHHHHHHHH
Q 028479 186 VGVVAGLAILIV 197 (208)
Q Consensus 186 ~~~~~~~~~~~~ 197 (208)
++.++++.++.+
T Consensus 7 v~tv~G~~vi~~ 18 (34)
T d2axtj1 7 VATVAGMGVIVI 18 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehhhhhhHhh
Confidence 455555544433
No 7
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=8.97 E-value=16 Score=18.46 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=14.8
Q ss_pred hhhCCCCcceEEEcceeEEE
Q 028479 40 SLVCPYTYGASLQLEGCYVR 59 (208)
Q Consensus 40 ~~~C~~~~~a~i~~~~C~lr 59 (208)
+..||.=+.+..|-..|.-+
T Consensus 2 P~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CccCccccCcchHHHHhhhh
Confidence 56788888888888877543
No 8
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.59 E-value=55 Score=18.55 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=16.0
Q ss_pred hchHHHHHHHHHHHhhhCCC
Q 028479 26 TDCSRCIESAVNQISLVCPY 45 (208)
Q Consensus 26 ~~C~~Cl~~a~~~~~~~C~~ 45 (208)
.-|..|+...+......||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 45999999998766667885
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.34 E-value=94 Score=17.47 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 028479 188 VVAGLAILIVFLSICRRAMER 208 (208)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (208)
++.++.+++.++.+..-++||
T Consensus 44 ~~~~~~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 44 VVLAVMGVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccC
No 10
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.33 E-value=15 Score=18.48 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCCCCcEEEEEeccCC
Q 028479 4 GTSTPPEATVYGLYQCRGD 22 (208)
Q Consensus 4 ~~~~~~~~~vygl~~Cr~D 22 (208)
|++|..--+..++.+|.+|
T Consensus 11 GEVG~tlytk~nliLCkrD 29 (33)
T d1j2oa2 11 GEVGRRLYYKLGRKLCRRD 29 (33)
T ss_dssp CCSSSCCCCBTTBCCCHHH
T ss_pred cchhhHHHhhcceeeehhh
Done!