Query 028482
Match_columns 208
No_of_seqs 119 out of 134
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 20:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028482.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028482hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qrjb1 a.28.3.1 (B:131-214) H 30.1 11 0.00083 25.7 1.9 17 187-203 14-30 (84)
2 d1d1da1 a.28.3.1 (A:151-230) R 29.1 12 0.00086 25.4 1.8 17 187-203 14-30 (80)
3 d2eiaa1 a.28.3.1 (A:148-222) E 26.8 16 0.0011 24.3 2.1 17 187-203 14-30 (75)
4 d1q2oa_ d.174.1.1 (A:) Nitric 20.2 22 0.0016 31.0 2.1 22 180-201 56-77 (416)
5 d1ivsa2 a.27.1.1 (A:579-796) V 18.1 26 0.0019 26.3 2.0 18 11-29 1-18 (218)
6 d1dzfa1 c.52.3.1 (A:5-143) Euk 17.6 36 0.0026 24.6 2.7 29 11-39 5-36 (139)
7 d1v31a_ a.42.1.1 (A:) Hypothet 17.6 25 0.0019 23.9 1.7 31 4-40 26-60 (93)
8 d2b3ja1 c.97.1.2 (A:1-151) tRN 16.5 40 0.0029 24.0 2.7 18 183-200 133-150 (151)
9 d1v32a_ a.42.1.1 (A:) Hypothet 15.8 33 0.0024 23.9 2.0 30 5-40 35-68 (101)
10 d1uhra_ a.42.1.1 (A:) SWI/SNF 15.4 25 0.0018 24.0 1.2 30 5-40 27-60 (93)
No 1
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=30.06 E-value=11 Score=25.68 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 028482 187 AEEFIQKFYKELKNQKR 203 (208)
Q Consensus 187 Ae~FI~~Fy~qlr~q~~ 203 (208)
-.+|++||++.++.+..
T Consensus 14 f~dfVdRl~~a~~~~~~ 30 (84)
T d1qrjb1 14 YHAFVERLNIALDNGLP 30 (84)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 56899999999997754
No 2
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=29.06 E-value=12 Score=25.41 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q 028482 187 AEEFIQKFYKELKNQKR 203 (208)
Q Consensus 187 Ae~FI~~Fy~qlr~q~~ 203 (208)
-++|+.||++.++.++.
T Consensus 14 f~dfVdRl~~al~~~~~ 30 (80)
T d1d1da1 14 FVDFANRLIKAVEGSDL 30 (80)
T ss_dssp HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 57899999999998764
No 3
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=26.80 E-value=16 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhh
Q 028482 187 AEEFIQKFYKELKNQKR 203 (208)
Q Consensus 187 Ae~FI~~Fy~qlr~q~~ 203 (208)
-++|+.||++.++.+..
T Consensus 14 f~dfVdRl~~a~~~~~~ 30 (75)
T d2eiaa1 14 YPEFVDRLLSQIKSEGH 30 (75)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 46799999999998753
No 4
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.20 E-value=22 Score=31.00 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=19.1
Q ss_pred chhhhHHHHHHHHHHHHHHhhh
Q 028482 180 SGYVDKAAEEFIQKFYKELKNQ 201 (208)
Q Consensus 180 ~~~vD~~Ae~FI~~Fy~qlr~q 201 (208)
-++|=.+|++||+.||..|+..
T Consensus 56 ~e~ll~eA~~Fi~q~y~e~~~~ 77 (416)
T d1q2oa_ 56 AEQLLSQARDFINQYYSSIKRS 77 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhhCcc
Confidence 3689999999999999998754
No 5
>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=18.11 E-value=26 Score=26.30 Aligned_cols=18 Identities=22% Similarity=0.693 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 028482 11 GKRIWSVVRVVFFMLRKGL 29 (208)
Q Consensus 11 aKRlW~vvR~v~fMlRKGi 29 (208)
|-||||..|.++ |-..|.
T Consensus 1 aNKlwNa~rF~~-~~~~~~ 18 (218)
T d1ivsa2 1 ANKLYNAARFVL-LSREGF 18 (218)
T ss_dssp HHHHHHHHHHHH-HHSSSC
T ss_pred ChHHHHHHHHHH-hCcCCC
Confidence 569999999874 445553
No 6
>d1dzfa1 c.52.3.1 (A:5-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.65 E-value=36 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHH-hc--cCcchhhhchH
Q 028482 11 GKRIWSVVRVVFFMLR-KG--LCKRKLLVDLN 39 (208)
Q Consensus 11 aKRlW~vvR~v~fMlR-KG--isKrKLmmDl~ 39 (208)
..|||.+-|.++-||+ +| |+..-|-+.+.
T Consensus 5 ~~rlfr~rrTv~EMl~DRGY~V~~~el~~s~~ 36 (139)
T d1dzfa1 5 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLE 36 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCHHHHcCCHH
Confidence 4799999999999998 45 56666666664
No 7
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.64 E-value=25 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcc----CcchhhhchHH
Q 028482 4 SQNVQVIGKRIWSVVRVVFFMLRKGL----CKRKLLVDLNM 40 (208)
Q Consensus 4 e~~~pvvaKRlW~vvR~v~fMlRKGi----sKrKLmmDl~L 40 (208)
|...+.|.|++|.+++ -+|+ -||++..|=.|
T Consensus 26 ~~sR~~v~k~iw~YIk------~n~Lqd~~nkr~I~~D~~L 60 (93)
T d1v31a_ 26 VETRPRIIAAIWHYVK------ARKLQNPNDPSFFNCDAAL 60 (93)
T ss_dssp EECSHHHHHHHHHHHH------HTTCBCSSCSSEEECCSHH
T ss_pred cCcHHHHHHHHHHHHH------HhCCCCCCCCCEEecCHHH
Confidence 3457889999999998 4676 57888887544
No 8
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=16.45 E-value=40 Score=24.02 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 028482 183 VDKAAEEFIQKFYKELKN 200 (208)
Q Consensus 183 vD~~Ae~FI~~Fy~qlr~ 200 (208)
-.++|.+.++.||+++|.
T Consensus 133 l~~e~~~L~~~Ff~~~r~ 150 (151)
T d2b3ja1 133 LKEACSTLLTTFFKNLRA 150 (151)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 378899999999999884
No 9
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.77 E-value=33 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcc----CcchhhhchHH
Q 028482 5 QNVQVIGKRIWSVVRVVFFMLRKGL----CKRKLLVDLNM 40 (208)
Q Consensus 5 ~~~pvvaKRlW~vvR~v~fMlRKGi----sKrKLmmDl~L 40 (208)
.+.+.|.|++|.+++ .+++ -||.++.|=.|
T Consensus 35 ~sR~eVtk~iw~YIK------~nnLqdp~nkr~I~~D~~L 68 (101)
T d1v32a_ 35 ISRYDVSDTIAKYIS------KEGLLDPSNKKKVVCDKRL 68 (101)
T ss_dssp CCHHHHHHHHHHHHH------HHTCBCSSCTTEEECCSHH
T ss_pred CCHHHHHHHHHHHHH------HhcCCCCccCCEEccCHHH
Confidence 346789999999998 5776 48888888554
No 10
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.37 E-value=25 Score=24.03 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcc----CcchhhhchHH
Q 028482 5 QNVQVIGKRIWSVVRVVFFMLRKGL----CKRKLLVDLNM 40 (208)
Q Consensus 5 ~~~pvvaKRlW~vvR~v~fMlRKGi----sKrKLmmDl~L 40 (208)
...+.|.|++|++++ .+|+ -||.+..|=.|
T Consensus 27 ~sR~~v~k~iw~YIk------~n~Lqdp~nkr~I~cD~~L 60 (93)
T d1uhra_ 27 QTRPVIIQALWQYIK------THKLQDPHEREFVLCDKYL 60 (93)
T ss_dssp EEHHHHHHHHHHHHH------HTTCBCSSCSSEECCCTTH
T ss_pred cCHHHHHHHHHHHHH------HhcCCCCCCCCEEecCHHH
Confidence 346789999999997 5786 46777777543
Done!