BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028483
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSN7|BH147_ARATH Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147
PE=1 SV=1
Length = 230
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 118/159 (74%), Gaps = 8/159 (5%)
Query: 36 QWKSETQQQIYSSKLIQALNHVNGASPSAP-------RRGRAVREAADRVLAVAAKGRTR 88
+W+SE QQQIYS+KL+ AL + + + R GRAVRE ADR LAVAA+G+T
Sbjct: 49 KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108
Query: 89 WSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKV 148
WSRAIL+ +KLKFRKHK+ R+S P+ TGS RSKK +VLRLKAK LPAVQRKV
Sbjct: 109 WSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKV 167
Query: 149 RVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTAL 187
+VL RLVPGCRKQ PV+LEE TDYIAA+EMQ+R MTA+
Sbjct: 168 KVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206
>sp|Q9C8Z9|BH148_ARATH Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148
PE=1 SV=1
Length = 221
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/186 (55%), Positives = 123/186 (66%), Gaps = 15/186 (8%)
Query: 30 SKQNQTQWKSETQQQIYSSKLIQALNHVN-------GASPSAPRRGRAVREAADRVLAVA 82
S + +W+SE QQ+IYS+KL QAL V +SP+A +RG+AVREAADR LAV+
Sbjct: 41 SGEIHARWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVS 100
Query: 83 AKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFS--VLRLKAKS 140
A+GRT WSRAIL +R+KLKFRK ++ A A S ++ VLRL KS
Sbjct: 101 ARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKS 160
Query: 141 LPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSS 200
+P V RKVRVLGRLVPGC KQ PVILEEATDYI ALEMQVRAM +L +LLS G
Sbjct: 161 IPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYG----- 215
Query: 201 SSAAPP 206
SA PP
Sbjct: 216 -SAPPP 220
>sp|O80482|BH149_ARATH Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149
PE=1 SV=1
Length = 207
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 29/192 (15%)
Query: 10 VTNSDRSKRKKKKKASQSKE--------SKQNQTQWKSETQQQIYSSKLIQALNHVNGAS 61
+ N+ S R+KK + S++ E ++++ +WK+ QQIY+ KL++AL V S
Sbjct: 9 IENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRS 68
Query: 62 PSAPRR---------GRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVS 112
+ R +R+ ADRVLA +A+G TRWSRAIL R++ K
Sbjct: 69 STTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKL---------K 119
Query: 113 APSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATD 172
A +TG+ +S+K R+K LPAV+RK+++LGRLVPGCRK P +L+EATD
Sbjct: 120 KHRKAKKSTGNCKSRKGLTETNRIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATD 176
Query: 173 YIAALEMQVRAM 184
YIAALEMQVRAM
Sbjct: 177 YIAALEMQVRAM 188
>sp|Q9M9L6|BH150_ARATH Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150
PE=1 SV=1
Length = 211
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 19/157 (12%)
Query: 36 QWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILT 95
+W++ T Q++YS KL AL RR VR+ AD+VLA A+G TRWSRAIL
Sbjct: 62 RWRATTAQKVYSLKLYDALQR--------SRRSATVRDTADKVLATTARGATRWSRAILV 113
Query: 96 HRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLV 155
R R+ + SA +AA +G ++ L AV +VRVLG LV
Sbjct: 114 SRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR-----------KLSAVGNRVRVLGGLV 162
Query: 156 PGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLS 192
PGCR+ P +L+E DYIAALEMQVRAMTAL+++LS
Sbjct: 163 PGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199
>sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1
Length = 430
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 103 RKHKKVNRVSAPSAAAAATGSGRSKKAGFS-------VLRL-KAKSLPAVQRKVRVLGRL 154
RK K++N + + A G+ ++++G + V L + + + +++ L L
Sbjct: 224 RKRKRINHTDESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQEL 283
Query: 155 VPGCRKQPFPVILEEATDYIAALEMQVRAM 184
+P C K IL+EA DY+ +L++Q++ M
Sbjct: 284 IPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 98 LKLKFRKHKKVNRVSAPSA-AAAATGSGRSKKAGFSVLRLKAK--------SLPA----- 143
L LK RKH + + S +G GR K+AG S L +K +L
Sbjct: 300 LSLK-RKHSNIQDIDCHSEDVEEESGDGR-KEAGPSRTGLGSKRSRSAEVHNLSERRRRD 357
Query: 144 -VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
+ K+R L L+P C K +L+EA +Y+ +L++QV+ M+
Sbjct: 358 RINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMS 400
>sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1
Length = 444
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAM 184
+ +++ L L+P C + IL+EA DY+ +L+MQ++ M
Sbjct: 272 INERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVM 312
>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2
SV=1
Length = 373
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSSSSA 203
+ K+RVL LVPG K +L+EA +Y+ L QV+A+ L L S SS+
Sbjct: 291 ISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTNLSFSSAPT 350
Query: 204 APP 206
+ P
Sbjct: 351 SFP 353
>sp|Q8L5W7|PIF6_ARATH Transcription factor PIF6 OS=Arabidopsis thaliana GN=PIF6 PE=1 SV=1
Length = 363
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
+ +K+R L L+P K +L+EA +Y+ L++QV+ MT
Sbjct: 204 INKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMMT 245
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTA 186
+ ++R+L LVP K +LEEA Y+ L++Q++ +++
Sbjct: 288 INERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 330
>sp|O22901|BH151_ARATH Transcription factor UPBEAT1 OS=Arabidopsis thaliana GN=UPB1 PE=2
SV=1
Length = 102
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 143 AVQRKVRVLGRLVPGCRK-QPFPVILEEATDYIAALEMQVRAMTALAELLS 192
A+ R+V+ L LVP + + + + DYI ALEM+V+ M + ++L+
Sbjct: 47 AIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQVLT 97
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
Length = 416
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGG 196
+K+R L L+P C K +L+EA Y+ L++QV +++S+G G
Sbjct: 245 FNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQV-------QMMSMGNG 290
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTA 186
+ ++R+L LVP K +LEEA Y+ L++Q++ +++
Sbjct: 259 INERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 301
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
+ +++ L L+P C K +L+EA +Y+ +L++Q++ M+
Sbjct: 300 INERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMS 341
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2
SV=1
Length = 366
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 144 VQRKVRVLGRLVPGCRK-QPFPVILEEATDYIAALEMQVRAMT 185
+ ++R+L LVPGC K V+L+E +Y+ +L+ QV ++
Sbjct: 228 ISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 270
>sp|B7GQ70|RSMH_BIFLS Ribosomal RNA small subunit methyltransferase H OS=Bifidobacterium
longum subsp. infantis (strain ATCC 15697 / DSM 20088 /
JCM 1222 / NCTC 11817 / S12) GN=rsmH PE=3 SV=1
Length = 359
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 57 VNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSR----AILTHRLKLKFRKHKKVNRVS 112
++ + P R A +AA+ V G R+SR AI+ HR K F ++NR+
Sbjct: 135 MDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRDKEPFTTTAQLNRLV 194
Query: 113 APSAAAAATGSGRSKKAGFSVLRLK--------AKSLPAVQRKVRVLGRLV 155
A +G K F LR++ A +LP ++ V GRLV
Sbjct: 195 DEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLV 245
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTA 186
+ +++ L LVP K +LEEA Y+ L++Q++ +++
Sbjct: 189 INERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 231
>sp|Q9C707|BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2
SV=1
Length = 298
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGG 196
+ ++++L LVP K +LE+A Y+ L++QV+ + A E GG
Sbjct: 217 ISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL-ATDEFWPAQGG 268
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGG 196
+ +++VL LVP K +LE+A Y+ L++QV+ + A E GG
Sbjct: 223 ISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAA-DEFWPAQGG 274
>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2
SV=1
Length = 281
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 144 VQRKVRVLGRLVPGCRKQPF-PVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSSSS 202
+ K+ L ++PGC K ++L+E +YI +L+ QV ++ E+++ G + +
Sbjct: 175 ISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIG 234
Query: 203 AAP 205
P
Sbjct: 235 VFP 237
>sp|Q9FE22|HFR1_ARATH Transcription factor HFR1 OS=Arabidopsis thaliana GN=HFR1 PE=1 SV=1
Length = 292
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 147 KVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALA 188
K+R L +LVP C K +L++ +Y+ L++Q++ M+ +
Sbjct: 153 KMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMMSTVG 194
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVG 194
+ K++ L +L+P C K L++A +Y+ +L+ Q++ M ++ +++ G
Sbjct: 271 INEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM--MSPMMNAG 319
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAEL 190
+ K++ L +L+P K +L+EA +Y+ L++QV+ + + L
Sbjct: 109 INEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLAVMNGL 155
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1
SV=1
Length = 259
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPV-ILEEATDYIAALEMQVRAMT 185
+ ++R L LVP KQ +LEEA +Y+ AL+ Q++ +T
Sbjct: 203 ISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELT 245
>sp|Q63269|ITPR3_RAT Inositol 1,4,5-trisphosphate receptor type 3 OS=Rattus norvegicus
GN=Itpr3 PE=1 SV=1
Length = 2670
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 38 KSETQQQIYSSKLIQALNHVNG--ASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILT 95
++ T Q + + ++Q L P ++ + EA R LA+ AK SRAIL
Sbjct: 1486 ENSTSLQTHQTIVVQLLQSTTRLLECPWLQQQHKGSVEACVRTLAMVAK-----SRAIL- 1539
Query: 96 HRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLV 155
L + H S S +AAA S + K R R++
Sbjct: 1540 --LPMDLDAHMSALLSSGGSCSAAAQRSAANYKTA-----------------TRTFPRVI 1580
Query: 156 PGCRKQPFPVILEEATDYIAALEMQVRAMTALAEL 190
P + + I+E+ D I ALE +++ + AEL
Sbjct: 1581 PTANQWDYKNIIEKLQDIITALEERLKPLVQ-AEL 1614
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
Length = 343
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 144 VQRKVRVLGRLVPGCRKQPF-PVILEEATDYIAALEMQVRAMTALAE 189
+ ++++L LVPGC K ++L+E +YI +L+ QV ++ E
Sbjct: 158 ISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLE 204
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSSS 201
+ +++ L LVP K +L+E DY+ L++QV+ ++ + +GG +S+SS
Sbjct: 152 IAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLS----MSRLGGAASASS 205
>sp|O13069|VSP2_BOTJA Thrombin-like enzyme KN-BJ 2 OS=Bothrops jararaca PE=1 SV=1
Length = 257
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 56 HVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPS 115
H+ S P + + R A ++ +++K T+W + I+ RL + + +S PS
Sbjct: 73 HLGVHSKKVPNKDKQTRVAKEKFFCLSSKNYTKWDKDIMLIRLDSPVKNSAHIAPISLPS 132
Query: 116 A 116
+
Sbjct: 133 S 133
>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3
Length = 198
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAEL 190
+ K+R+L R+VPG K +L+EA Y L+ QVR + +++
Sbjct: 134 ISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQPHSQI 180
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT--------ALAELLSVGG 195
+ +++ L LVP K +L+E DY+ L++QV+ ++ +++ +S G
Sbjct: 160 IAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISEAG 219
Query: 196 GSSSSSSAA 204
GS ++S+A
Sbjct: 220 GSHGNASSA 228
>sp|Q8GT73|BH119_ARATH Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119
PE=2 SV=2
Length = 544
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 148 VRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
++ L L+P CRK +LE+ +Y+ +L++Q++ M+
Sbjct: 377 MKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQMMS 414
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
+ K++ L L+P K +L+EA +Y+ L++QV+ +T
Sbjct: 213 INEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLT 254
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127
PE=2 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 144 VQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQV 181
+ +++ L +L+P C K +LE+ +Y+ +LEMQ+
Sbjct: 166 INERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQI 203
>sp|Q8G4R0|RSMH_BIFLO Ribosomal RNA small subunit methyltransferase H OS=Bifidobacterium
longum (strain NCC 2705) GN=rsmH PE=3 SV=1
Length = 359
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 57 VNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSR----AILTHRLKLKFRKHKKVNRVS 112
++ + P R A +AA+ V G R+SR AI+ R K F ++NR+
Sbjct: 135 MDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTTAQLNRLV 194
Query: 113 APSAAAAATGSGRSKKAGFSVLRLK--------AKSLPAVQRKVRVLGRLV 155
A +G K F LR++ A +LP ++ V GRLV
Sbjct: 195 DEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLV 245
>sp|B3DQM3|RSMH_BIFLD Ribosomal RNA small subunit methyltransferase H OS=Bifidobacterium
longum (strain DJO10A) GN=rsmH PE=3 SV=1
Length = 359
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 57 VNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSR----AILTHRLKLKFRKHKKVNRVS 112
++ + P R A +AA+ V G R+SR AI+ R K F ++NR+
Sbjct: 135 MDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTTAQLNRLV 194
Query: 113 APSAAAAATGSGRSKKAGFSVLRLK--------AKSLPAVQRKVRVLGRLV 155
A +G K F LR++ A +LP ++ V GRLV
Sbjct: 195 DEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLV 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.122 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,958,655
Number of Sequences: 539616
Number of extensions: 2329142
Number of successful extensions: 11586
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 11474
Number of HSP's gapped (non-prelim): 125
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)