BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028484
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KJ6|A Chain A, Nmr Solution Structure Of A Tubulin Folding Cofactor B
Obtained From Arabidopsis Thaliana: Northeast
Structural Genomics Consortium Target Ar3436a
Length = 97
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 57/61 (93%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
MSVE+VK+KLW+KCGTSVNSM+LELYDD+ +KVA L+D+SRPLGF+SP G+RLH+IDLD
Sbjct: 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 96
Query: 61 P 61
P
Sbjct: 97 P 97
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
S+ E+ NI VG+RCEV GA +RG V YVG A G WVG++YDEP+GK++G
Sbjct: 4 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 62
Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 199
V GVRYF+C P +G VRP VKVGD+PE
Sbjct: 63 SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 92
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 4/90 (4%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNG 169
S+ E+ NI VG+RCEV GA +RG V YVG A G WVG++YDEP+GK++G
Sbjct: 1 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDG 59
Query: 170 IVKGVRYFECPPLHGAMVRPDKVKVGDYPE 199
V GVRYF+C P +G VRP VKVGD+PE
Sbjct: 60 SVAGVRYFDCDPKYGGFVRPVDVKVGDFPE 89
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
I VGDRC PG + G V++VG+ S+ PG+WVG+++DEP+GK +G VKG R F+C P
Sbjct: 5 TIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPN 64
Query: 183 HGAMVRPDKVKVGDYP 198
+G +RPD+V+VGD+P
Sbjct: 65 YGGFLRPDQVEVGDFP 80
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 98 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGF 154
E++ +Q + +LS + S I+VG RCEV D +RG V YVG + PG+
Sbjct: 9 EELRAQQEAEAAQRLSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGY 65
Query: 155 WVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 196
WVG++YDEPLGK++G V G RYFEC +GA V+P V VGD
Sbjct: 66 WVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 13 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 70
Query: 178 ECPPLHGAMVRPDKV 192
ECP L G RP K+
Sbjct: 71 ECPALQGIFTRPSKL 85
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 172
S+ E+ + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V
Sbjct: 54 SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 111
Query: 173 GVRYFECPPLHGAMVRPDKV 192
GVRYF+C PL G RP K+
Sbjct: 112 GVRYFQCEPLKGIFTRPSKL 131
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
S VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C P
Sbjct: 6 SGFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 63
Query: 182 LHGAMVRPDKV 192
L G RP K+
Sbjct: 64 LKGIFTRPSKL 74
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
S+ VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C P
Sbjct: 2 SDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 59
Query: 182 LHGAMVRPDK 191
L G RP K
Sbjct: 60 LKGIFTRPSK 69
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
+ VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C PL
Sbjct: 2 DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 183 HGAMVRPDKV 192
G RP K+
Sbjct: 60 KGIFTRPSKL 69
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
+ VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF+C PL
Sbjct: 2 DFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 183 HGAMVRPDKV 192
G RP K+
Sbjct: 60 KGIFTRPSKL 69
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
S + +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 6 SGLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 182 LHGAMVRPDKV-KVGDYPE 199
G KV ++G P
Sbjct: 64 KFGLFAPIHKVIRIGSGPS 82
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 39 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 96
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 97 GLFAPVHKVTKIGFPSTTP 115
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF C P HG
Sbjct: 28 VGDQVLV-AGQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 85
Query: 186 MVRPDKV-KVGDYP 198
++ ++G P
Sbjct: 86 FAPASRIQRIGSGP 99
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 2 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 59
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 60 GLFAPVHKVTKIGFPSTTP 78
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 10 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 67
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 68 GLFAPVHKVTKIGFPSTTP 86
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin
1
Length = 112
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 97 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 156
K V S+ PS S E + VG R EV RG V YVG A A G WV
Sbjct: 12 KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 65
Query: 157 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 194
G+ DE GK++G V+G +YF C HG VR +++V
Sbjct: 66 GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 103
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 16 GLRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPK 73
Query: 183 HGAMVRPDKV 192
G K+
Sbjct: 74 QGLFASVSKI 83
>pdb|1T0Y|A Chain A, Solution Structure Of A Ubiquitin-Like Domain From
Tubulin- Binding Cofactor B
Length = 122
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
MS+ +K KL GT+V+SM ++L+D + LTD ++ L GYR+H +D
Sbjct: 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD-- 85
Query: 61 PSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 99
VT G +D S+VEKY +S++ Y KR + R +K+K
Sbjct: 86 ---VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A G WVG+ DE GK++G V+G +YF C H
Sbjct: 13 LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 71
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 72 GIFVRQSQIQV 82
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 71
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A G WVG+ DE GK++G V+G +YF C H
Sbjct: 1 LRVGSRVEVIGKGHRGTVAYVGMT-LFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 60 GIFVRQSQIQV 70
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 137 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 193
K GVV+YVG A+ G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 36 KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVR 91
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 98 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVG 157
E+ ++++PS L++ D + +GDR + + G++++ G+ S A GFW G
Sbjct: 11 EQQVTESPS-----LASVPTADELFDFHIGDRVLIG-NVQPGILRFKGET-SFAKGFWAG 63
Query: 158 IQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
++ D+P G +NG G+ YFEC HG P K+
Sbjct: 64 VELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKI 98
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +G+R V G + G +++ G + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 11 LRLGERVLVV-GQRLGTIRFFG-TTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 68
Query: 184 GAMVRPDKVK 193
G P +V+
Sbjct: 69 GIFAPPSRVQ 78
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P
Sbjct: 24 GLKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 183 HGAMVRPDKV 192
+G K+
Sbjct: 82 YGIFAPLSKI 91
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 141 VKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
V+YVG + A G W+G++ GK++G V RYF C P +G +VRP +V
Sbjct: 30 VRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 80
>pdb|4B6W|A Chain A, Architecture Of Trypanosoma Brucei Tubulin-Binding
Cofactor B
Length = 86
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61
++ES+K+ ++ T L+L DD + N + LG+Y + +HV+DL P
Sbjct: 26 TIESIKENVFTHFATPPEYXQLQLIDDRGITIEKNXANDKQLGYYQCRDEFVIHVVDLQP 85
Query: 62 S 62
S
Sbjct: 86 S 86
>pdb|2KJR|A Chain A, Solution Nmr Structure Of The N-Terminal Ubiquitin-Like
Domain From Tubulin-Binding Cofactor B, Cg11242, From
Drosophila Melanogaster. Northeast Structural Genomics
Consortium Target Fr629a (Residues 8-92)
Length = 95
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58
++V +K KL G +M ++++ +T V+ + +N LG+Y+ G RLHV+D
Sbjct: 38 LTVAQLKTKLEILTGGCAGTMKVQVFKG-DTCVSTMDNNDAQLGYYANSDGLRLHVVD 94
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 43 LGFYSPLQGYRLHVIDLDPSSVTSGG-WLEDTSLVEKYTISEEEYSK 88
LG + QG+R+ V+ +DPSSV SGG L D + + + + + Y +
Sbjct: 76 LGMHLIEQGHRVAVLAVDPSSVRSGGSILGDKTRMARLAVHPDAYVR 122
>pdb|1V6E|A Chain A, Solution Structure Of A N-Terminal Ubiquitin-Like Domain
In Mouse Tubulin-Specific Chaperone B
Length = 95
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
+++ K KL G+ + M LELY + + L LG Y G R+HVID
Sbjct: 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88
Query: 61 PSSVTSG 67
S +SG
Sbjct: 89 GSGPSSG 95
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 50 QGYRLHVIDLDPSSVTSGGWL 70
+G++L V+ +DPSS TSGG L
Sbjct: 101 RGHKLSVLAVDPSSCTSGGSL 121
>pdb|3TW5|A Chain A, Crystal Structure Of The Gp42 Transglutaminase From
Phytophthora Sojae
pdb|3TW5|B Chain B, Crystal Structure Of The Gp42 Transglutaminase From
Phytophthora Sojae
Length = 367
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 82 SEEEYSKRDGT-FRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRG- 139
+ E+Y+K G + F + V +N ++ +D CS +T G C + G G
Sbjct: 60 AAEKYAKAFGKDVKTFMDAVSKKNGIDSQSGRKKCSSDDDCSTLTDGSSCSIRTGKTSGY 119
Query: 140 -VVKYVGQAESIAPGFWVGIQYDEPLGKHNGIV 171
+ + G + + +P + + P+ KHNG+
Sbjct: 120 CIPTWFGISHAWSPAAILETEPKCPV-KHNGVT 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,855,736
Number of Sequences: 62578
Number of extensions: 288257
Number of successful extensions: 436
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 35
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)