BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028484
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 13/205 (6%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
MS+ +K KL GT+V+SM ++L+D + LTD ++ L GYR+H +D
Sbjct: 26 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD-- 83
Query: 61 PSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSA--VENKLSNNYM 117
VT G +D S+VEKY +S++ Y KR + R +K+K+ + SA +EN+ S+
Sbjct: 84 ---VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKKMQEEQGSAAPMENE-SDKLN 139
Query: 118 EDLCSNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGV 174
E+ NI VG+RCEV GA +RG V YVG A G WVG++YDEP+GK++G V GV
Sbjct: 140 EEAAKNIMVGNRCEVTVGAQMARRGEVAYVG-ATKFKEGVWVGVKYDEPVGKNDGSVAGV 198
Query: 175 RYFECPPLHGAMVRPDKVKVGDYPE 199
RYF+C P +G VRP VKVGD+PE
Sbjct: 199 RYFDCDPKYGGFVRPVDVKVGDFPE 223
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 112/213 (52%), Gaps = 18/213 (8%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
+++ K KL G+ + M LELY + + L LG Y G R+HVID
Sbjct: 32 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID-- 89
Query: 61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF---------KEKVLSQNPSAVENK 111
S G ED S VEKY IS E Y +R T R F E++ +Q + +
Sbjct: 90 -HSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKRSKLGPYNEELRAQQEAEAAQR 148
Query: 112 LSNNYMEDLCSNITVGDRCEV---DPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHN 168
LS + S I+VG RCEV D +RG V YVG + PG+WVG++YDEPLGK++
Sbjct: 149 LSEEKAQ--ASAISVGSRCEVRAPDHSLRRGTVMYVGLTD-FKPGYWVGVRYDEPLGKND 205
Query: 169 GIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
G V G RYFEC +GA V+P V VGD+PE D
Sbjct: 206 GSVNGKRYFECQAKYGAFVKPSAVTVGDFPEED 238
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 112/211 (53%), Gaps = 14/211 (6%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
++V K KL G+ + M LELY + L + LG Y G R+HVID
Sbjct: 32 LTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGSYPVDDGCRIHVIDHS 91
Query: 61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF--KEKVLSQNPSAVENKLSNNYM- 117
+ + G ED S VEKY IS+E Y +R + R F + K+ N + + N
Sbjct: 92 GARL---GEYEDISKVEKYEISQEAYEQRQDSIRSFLKRNKLGRFNEEERAQQEAENSQR 148
Query: 118 ----EDLCSNITVGDRCEV-DPGA--KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
E S I VG RCEV PG +RG V YVG + PG+W+GI+YDEPLGK++G
Sbjct: 149 LIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD-FKPGYWIGIRYDEPLGKNDGS 207
Query: 171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
V G RYFEC +GA V+P V VGD+PE D
Sbjct: 208 VNGKRYFECQAKYGAFVKPSVVTVGDFPEED 238
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 130 bits (326), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 114/218 (52%), Gaps = 15/218 (6%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60
+++ K KL G+ + M LELY + + L LG Y G R+HVID
Sbjct: 32 LTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 91
Query: 61 PSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF-KEKVLSQNPSAVENKLSNNYMED 119
+ + G ED S VEKYTIS+E Y +R T R F K L + + +
Sbjct: 92 GARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQR 148
Query: 120 LC------SNITVGDRCEVDPGA---KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGI 170
L S+I VG RCEV +RG V YVG + PG+W+G++YDEPLGK++G
Sbjct: 149 LAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD-FKPGYWIGVRYDEPLGKNDGS 207
Query: 171 VKGVRYFECPPLHGAMVRPDKVKVGDYPERDPFEEDEI 208
V G RYFEC +GA V+P V VGD+PE D + DEI
Sbjct: 208 VNGKRYFECQAKYGAFVKPAVVTVGDFPEED-YGLDEI 244
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 17/215 (7%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLELYDDT--NTKVAALTDNSRPLGFYSPLQGYRLHVID 58
+ ++ K+KL+R GT M L L D+ N D+ + LG Y P G +H+ID
Sbjct: 58 LKIKDFKEKLYRFVGTEPKYMELILRDENKVNDICKIDDDDDKTLGSYEPKDGMNVHIID 117
Query: 59 LDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYME 118
DP++ S L+D S K ISEE+Y+KR+GT++K+KE+ + +
Sbjct: 118 KDPNNFVS--ELQDISKAPKPVISEEDYNKREGTYKKWKEENQLKKENDTTATTVTATTT 175
Query: 119 DLCS------NITVGDRCEV---DP---GAKRGVVKYVGQAESIAPGFWVGIQYDEPLGK 166
+ I VGDRC+V DP + G V+YVG E + G W+G++ D PLGK
Sbjct: 176 TTNNATDTEIEIKVGDRCKVISDDPTNYDERLGKVQYVGTVE-FSSGVWIGVELDLPLGK 234
Query: 167 HNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERD 201
++G VKG +YF+C P +G +P V VGDYPE +
Sbjct: 235 NDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYPEEE 269
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 70 LEDTSLVEKYTISEEEYSKRDGTFRKFKEK--VLSQNPSAVENKLSNNY-----MEDLCS 122
+D S V+KY + E+Y R + +K++ + NP +K S + DL
Sbjct: 93 FDDLSQVDKYVMPREQYENRTDSVYAWKKRNQLGRFNPDFEASKASRQESLKRELVDLQK 152
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIA-PGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
N+ RC G + G ++Y+G I WVG+++DEP+GK++G V G RYF
Sbjct: 153 NLN--SRC-CAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKN 209
Query: 182 LHGAMVRPDKVKVGDYPERDPFE 204
HG+ +R +V+VGD+P D E
Sbjct: 210 KHGSFLRSSEVEVGDFPPEDILE 232
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 75.9 bits (185), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 73 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 130
Query: 178 ECPPLHGAMVRPDKV 192
ECP L G RP K+
Sbjct: 131 ECPALQGIFTRPSKL 145
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 218 DLRLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 275
Query: 183 HGAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 276 FGLFAPIHKVIRIGFPSTSP 295
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V GVRYF
Sbjct: 74 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGVRYF 131
Query: 178 ECPPLHGAMVRPDKV 192
ECP L G RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 219 DLHLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 276
Query: 183 HGAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 277 FGLFAPIHKVIRIGFPSTSP 296
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 74.7 bits (182), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
+D + VG+R V+ G K GVV+Y+G+ + APG W G+ D+P+GK++G V G+RYF
Sbjct: 74 DDFLGDFVVGERVWVN-GVKPGVVQYLGETQ-FAPGQWAGVVLDDPVGKNDGAVGGLRYF 131
Query: 178 ECPPLHGAMVRPDKV 192
ECP L G RP K+
Sbjct: 132 ECPALQGIFTRPSKL 146
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
++ +GDR V G K GVV+YVG+ + A G W G++ DEPLGK++G V G RYF+CPP
Sbjct: 219 DLHLGDRVLVG-GTKTGVVRYVGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPK 276
Query: 183 HGAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 277 FGLFAPIHKVIRIGFPSTSP 296
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF CPP HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475
Query: 186 MVRPDKVK 193
+++
Sbjct: 476 FAPASRIQ 483
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 294 LRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQ 351
Query: 184 GAMVRPDKV-KVGDYP 198
G K+ K D P
Sbjct: 352 GLFASVSKISKAVDAP 367
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF CPP HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGV 475
Query: 186 MVRPDKVK 193
+++
Sbjct: 476 FAPASRIQ 483
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 294 LRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQ 351
Query: 184 GAMVRPDKV-KVGDYP 198
G K+ K D P
Sbjct: 352 GLFASVSKISKAVDAP 367
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 118 EDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYF 177
+D + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V GVRYF
Sbjct: 53 DDFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVAGVRYF 110
Query: 178 ECPPLHGAMVRPDKVKVGDYPERDPFEEDE 207
+C PL G RP K+ R EDE
Sbjct: 111 QCEPLRGIFTRPSKL------SRKVLTEDE 134
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 215 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRY 272
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 273 GLFAPVHKVTKIGFPSTTP 291
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 98 EKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVG 157
EK +S ++ + S+ E+ + VG+R V+ G K G ++++G+ + APG W G
Sbjct: 34 EKTISSEKAS--STPSSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAG 89
Query: 158 IQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
I DEP+GK++G V GVRYF+C PL G RP K+
Sbjct: 90 IVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKL 124
Score = 64.3 bits (155), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 212 LKIGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 269
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 270 GLFAPVHKVTKIGFPSTTP 288
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 113 SNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVK 172
S+ E+ + VG+R V+ G K G ++++G+ + APG W GI DEP+GK++G V
Sbjct: 47 SSETQEEFVDDFRVGERVWVN-GNKPGFIQFLGETQ-FAPGQWAGIVLDEPIGKNDGSVA 104
Query: 173 GVRYFECPPLHGAMVRPDKV 192
GVRYF+C PL G RP K+
Sbjct: 105 GVRYFQCEPLKGIFTRPSKL 124
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VGDR V G K GVV+++G+ + A G W G++ DEPLGK++G V G RYF+C P +
Sbjct: 211 LKVGDRVLVG-GTKAGVVRFLGETD-FAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 268
Query: 184 GAMVRPDKVKVGDYPERDP 202
G KV +P P
Sbjct: 269 GLFAPVHKVTKIGFPSTTP 287
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
VGD+ V G K+G+V++ G+ + APG+W GI+ D+P GKH+G V GVRYF C P HG
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTD-FAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGV 475
Query: 186 MVRPDKVK 193
+++
Sbjct: 476 FAPASRIQ 483
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR +D G K G +++ G E A G WVG++ DEP GK++G V GVRYF CPP
Sbjct: 294 LRLGDRVLLD-GQKTGTLRFCGTTE-FASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQ 351
Query: 184 GAMVRPDKV-KVGDYP 198
G KV K D P
Sbjct: 352 GLFASVSKVSKAVDAP 367
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
I +GD+ V G K+G+V++ G+ + APG+W GI+ ++P GKH+G V GVRYF C +
Sbjct: 403 IEIGDQVLVA-GQKQGIVRFYGKTD-FAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKN 460
Query: 184 GAMVRPDKVK 193
G P +V+
Sbjct: 461 GVFAPPSRVQ 470
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR +D K G +++ G E A G WVG++ DEP GK++G V G+RYF CPP
Sbjct: 284 LKLGDRILLD-AEKAGTLRFCGTTE-FASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQ 341
Query: 184 GAMVRPDKV-KVGDYP 198
G K+ K D P
Sbjct: 342 GIFAPVSKISKAPDQP 357
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3
PE=3 SV=3
Length = 1367
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 124 ITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
+ VG + E+ G+ R V+YVG+ + APG WVGI+ DEP GK++G V+G RYF C
Sbjct: 6 VAVGQKIELADGSGRTAFVRYVGET-AFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMG 64
Query: 183 HGAMVRPDKVKV 194
+G VRP V
Sbjct: 65 YGMFVRPTTFNV 76
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 122 SNITVGDRCEVDPG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFEC 179
+ + VGDR V G ++ G+++Y+G+ + APG W G++ DEP GK++G V +RYFEC
Sbjct: 235 NGMAVGDRVIVSSGFGSRPGILRYLGETQ-FAPGNWCGVELDEPSGKNDGTVDDIRYFEC 293
Query: 180 PPLHGAMVRPDKVKV 194
P +G V KV +
Sbjct: 294 KPKYGVFVPIAKVSL 308
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 104 NPSAVENKLSNNYMEDLCSN---ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQY 160
N S++ + ++N L +N +G R + G + G + ++G A G W G+
Sbjct: 100 NLSSINSAYTDNSSAVLTANTEQFIIGQRVWLG-GTRPGQIAFIGDTH-FAAGEWAGVVL 157
Query: 161 DEPLGKHNGIVKGVRYFECPPLHGAMVR 188
DEP GK++G V G RYF+C P G R
Sbjct: 158 DEPNGKNDGCVSGKRYFQCEPKRGIFSR 185
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 137 KRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 196
K GVV+YVG A+ G WVG++ D P GK++G + G +YF C P +G +VRP +V+
Sbjct: 1713 KTGVVRYVGPAD-FQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRAT 1771
Query: 197 YPER 200
P R
Sbjct: 1772 GPVR 1775
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 97 KEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWV 156
K V S+ PS S E + VG R EV RG V YVG A A G WV
Sbjct: 5 KRHVYSRTPSG-----SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWV 58
Query: 157 GIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKV 194
G+ DE GK++G V+G +YF C HG VR +++V
Sbjct: 59 GVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV 96
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGA 185
+GDR + + G++++ G+ S A GFW G++ D+P G +NG G+ YFEC HG
Sbjct: 2499 IGDRVLIG-NVQPGILRFKGET-SFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 2556
Query: 186 MVRPDKV 192
P K+
Sbjct: 2557 FAPPQKI 2563
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPL 182
N+ VG R E+ G V YVG S A G WVG+ DEP GK++G +KG +YF+C
Sbjct: 5 NLKVGARVELTGKDLLGTVAYVGMT-SFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDEN 63
Query: 183 HGAMVRPDKVKV 194
G VRP ++++
Sbjct: 64 CGMFVRPTQLRL 75
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 27 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 85
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 86 GIFVRQSQIQV 96
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 27 LRVGSRVEVIGKGHRGTVAYVG-ATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 85
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 86 GIFVRQSQIQV 96
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 16/107 (14%)
Query: 98 EKVLSQNPS-----------AVENKLSNNYMEDLCSNITVGDRCEVDPGAKRGVVKYVGQ 146
+K LS++PS + + +N++ E + +G+R V G + G +K+ G
Sbjct: 450 KKTLSKSPSLPSRASAGLKSSATSAANNSHHE---GALHLGERVLV-VGQRVGTIKFFGT 505
Query: 147 AESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 193
+ APG+W GI+ ++P GK++G V GV+YF C P +G P +V+
Sbjct: 506 T-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQ 551
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 340
Query: 184 GAMVRPDKV 192
G K+
Sbjct: 341 GIFAPLSKI 349
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 139 GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
V+YVG + A G W+G++ GK++G V RYF C P +G +VRP +V
Sbjct: 637 ATVRYVGPTD-FASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRV 689
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ D+ GK++G V+G RYF C H
Sbjct: 10 LKVGSRVEVIGKGYRGTVAYVG-ATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENH 68
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 69 GIFVRQSQIQV 79
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ VG R EV RG V YVG A A G WVG+ DE GK++G V+G +YF C H
Sbjct: 28 LKVGSRVEVIGKGHRGTVAYVG-ATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENH 86
Query: 184 GAMVRPDKVKV 194
G VR +++V
Sbjct: 87 GIFVRQSQIQV 97
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +G+R V G + G +K+ G + APG+W GI+ ++P GK++G V GV+YF C P +
Sbjct: 485 LRLGERVLV-VGQRVGTIKFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRY 542
Query: 184 GAMVRPDKVK 193
G P +V+
Sbjct: 543 GIFAPPSRVQ 552
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 340
Query: 184 GAMVRPDKV-KVGD 196
G K+ KV D
Sbjct: 341 GIFAPLSKITKVKD 354
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 83 EEEYSKRDGTFRKFKEKVLSQNPSAVENKLSNNYMEDLCSNITV---GDRCE-------- 131
+ Y K+ K K +S++PS LS+ L S+ T RCE
Sbjct: 437 RQSYPKKQNAISSNK-KTMSKSPS-----LSSRASAGLNSSATSTANNSRCEGELRLGER 490
Query: 132 -VDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPD 190
+ G + G +++ G + APG+W GI+ ++P GK++G V GV+YF C P +G P
Sbjct: 491 VLVVGQRLGTIRFFGTT-NFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPS 549
Query: 191 KVK 193
+V+
Sbjct: 550 RVQ 552
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 124 ITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLH 183
+ +GDR V G K G +++ G E A G W GI+ DEP GK+NG V V+YF+C P +
Sbjct: 283 LKLGDRV-VIAGQKVGTLRFCGTTE-FASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKY 340
Query: 184 GAMVRPDKV 192
G K+
Sbjct: 341 GIFAPLSKI 349
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 139 GVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKV 192
G V+YVG + A G W+G++ GK++G V RYF C P HG +VRP +V
Sbjct: 638 GTVRYVGPTD-FASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRV 690
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 1 MSVESVKDKLWRKCGTSVNSMSLEL---YDD----TNTKVAALTDNSRPLGFYSPLQGYR 53
+ + KD+L+ G M + + YD+ + K A ++ F +
Sbjct: 21 LKLRQFKDRLYHVTGVEPEDMEIVVKRQYDNKEIYSTKKGGAYSNEDEDANFLKGEEELI 80
Query: 54 LHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKE-------KVLSQNPS 106
+ V D + S+++ + + ISEE+Y +RD + ++K Q+
Sbjct: 81 VVVTDSNAQSISNQLATQAEGIPSMEVISEEDYLRRDQSVLRWKMAHGYGRFNAAQQSQR 140
Query: 107 AVENKLSNNYM-EDLCSNITVGDRCEVDPGAKR-GVVKYVGQAESIAPGFWVGIQYDEPL 164
A K Y E L + I R VD A R +++YVG G W G+++ E
Sbjct: 141 AALAKQDEAYAREQLTAAIGRHCRVTVDGSAPREAILRYVGPLPLDVMGTWCGVEFPEAA 200
Query: 165 GKHNGIVKGVRYF-ECPPLHGAMVRPDKVKV 194
GK++G + GV F P HG+ VRP V++
Sbjct: 201 GKNDGRINGVTLFGPVAPGHGSFVRPRAVEI 231
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 125 TVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVRYFEC-PPL 182
VG R D +RG V+YVG A G W+G+++D P GKH+G GVRYF C P
Sbjct: 6 AVGRRVCCD--GERGTVRYVGPVPPTA-GVWLGVEWDHPERGKHDGSHDGVRYFTCRHPT 62
Query: 183 HGAMVRPDKVKVG-DY 197
G+ VRP K G DY
Sbjct: 63 GGSFVRPQKASFGVDY 78
>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1
Length = 524
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 117 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 175
M D+ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDILPLDVIGRRVEVN--GEYATVRFCGAVPPVA-GLWLGVEWDNPERGKHDGSHEGTM 57
Query: 176 YFEC-PPLHGAMVRPDKVKVGD 196
YF+C P G+ VRP KV GD
Sbjct: 58 YFKCRHPTGGSFVRPSKVNFGD 79
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 117 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 175
M D + +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDTLTADVIGQRVEVN--GEHATVRFAGVVPPVA-GPWLGVEWDNPERGKHDGSHEGTV 57
Query: 176 YFEC-PPLHGAMVRPDKVKVG 195
YF+C P G+ +RP+KV G
Sbjct: 58 YFQCRHPTGGSFIRPNKVNFG 78
>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2 SV=1
Length = 524
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 117 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 175
M D+ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDILPLDVIGRRVEVN--GEYATVRFCGAVPPVA-GLWLGVEWDNPERGKHDGSHEGTM 57
Query: 176 YFEC-PPLHGAMVRPDKVKVGD 196
YF+C P G+ VRP+ V G+
Sbjct: 58 YFKCRHPTGGSFVRPNIVNFGE 79
>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1
Length = 527
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 117 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 175
M D + +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MSDTLTADVIGRRVEVN--GEHATVRFAGVVPPVA-GPWLGVEWDNPERGKHDGSHEGTV 57
Query: 176 YFEC-PPLHGAMVRPDKVKVG 195
YF+C P G+ +RP+KV G
Sbjct: 58 YFKCRHPTGGSFIRPNKVNFG 78
>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1
Length = 528
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 117 MEDLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVR 175
M ++ +G R EV+ + V++ G +A G W+G+++D P GKH+G +G
Sbjct: 1 MNSTSTSDVIGRRVEVN--GEHATVRFSGLVPPVA-GLWLGVEWDNPERGKHDGSHEGTV 57
Query: 176 YFEC-PPLHGAMVRPDKVKVG 195
YF+C P G+ +RP KV G
Sbjct: 58 YFKCRHPTAGSFIRPHKVNFG 78
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 139 GVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECP-PLHGAMVRPDKVKVG 195
V+YVG PG W+G+++D L GKHNG +G +YF C P G+ +R K G
Sbjct: 21 ATVRYVGNVPP-TPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRLKKANFG 78
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 126 VGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEP-LGKHNGIVKGVRYFECPPL-H 183
+G+R + D G+ G ++Y G+ + G W GI++D+P GKH G VKG +YF+C
Sbjct: 15 IGERVKGDDGS-VGTIRYQGKVDGF-EGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKGS 72
Query: 184 GAMVRPDKVKVGD 196
G+ ++ +K+ G+
Sbjct: 73 GSFMKYEKLIKGE 85
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 138 RGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFE 178
+G VK++G+ + A G W GI+ D+PLGK++G G+RYF+
Sbjct: 27 KGRVKFIGETQ-FAKGIWYGIELDKPLGKNDGSANGIRYFD 66
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 122 SNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPP 181
S ++VGD EV + G+V++ G + G W+G++ GK++G VKG RYF C
Sbjct: 2 SYLSVGD--EVLIRGELGIVRFAGSTD-FESGIWLGVELLNGKGKNDGSVKGKRYFSCEK 58
Query: 182 LHGAMVRPDKVKVGDYP 198
G VR V P
Sbjct: 59 GKGIFVRACSSNVMKRP 75
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 138 RGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHG 184
+G ++YVG G + GI+ EP GKH+G +GV YF P HG
Sbjct: 32 KGFLRYVGPIHG-KDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHG 77
>sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas mendocina (strain ymp)
GN=dnaE2 PE=3 SV=1
Length = 1026
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG--TF 93
NS P+GFYSP LQ R H I++ P+ V W D SL E+ + R G
Sbjct: 748 NSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAW--DCSLEPS---DGEQPAIRLGLRLL 802
Query: 94 RKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDR---CEVDPGAKRGV 140
R F+E+ + A ++DLC T+ R C D GA RG+
Sbjct: 803 RGFREED-ALRIEATRQAAPFTDVDDLCRRATLDARARECLADAGALRGL 851
>sp|A1KCL7|DNAE2_AZOSB Error-prone DNA polymerase OS=Azoarcus sp. (strain BH72) GN=dnaE2
PE=3 SV=1
Length = 1064
Score = 37.4 bits (85), Expect = 0.076, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW---LED 72
NS+P+GFY+P LQ R H +++ P VT+ W LED
Sbjct: 781 NSQPMGFYAPAQLLQDARRHGVEVRPVDVTASAWDATLED 820
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 134 PGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECP-PLHGAMVRPDKV 192
P RG +KYVG ++ A G + G+ +GK++G G +YF+ P G ++ KV
Sbjct: 15 PNLGRGQLKYVGPVDTKA-GMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKV 73
>sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE2 PE=3
SV=1
Length = 1031
Score = 34.7 bits (78), Expect = 0.50, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 75
NS P+GFYSP LQ R H + P V GW D SL
Sbjct: 752 NSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGW--DCSL 789
>sp|A6VAU7|DNAE2_PSEA7 Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain PA7)
GN=dnaE2 PE=3 SV=1
Length = 1024
Score = 34.3 bits (77), Expect = 0.63, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 21/140 (15%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG--TF 93
NS P+GFYSP LQ R H I P V W D SL I +E+ + R G
Sbjct: 745 NSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRW--DCSL---EPIGQEQPAIRLGLRMI 799
Query: 94 RKFKEKVLSQNPSAVENKLSNNYMEDLCSNITVGDRC---EVDPGAKRGVVKY------- 143
R F+E+ + A + + S + DL + R D GA RG+ +
Sbjct: 800 RGFREEDARRIEQARQAQ-SFTDVHDLGRRAGLDTRALELLADAGALRGLAGHRHKARWA 858
Query: 144 VGQAESIAPGFWVGIQYDEP 163
+ E P F G + +EP
Sbjct: 859 IAGVEPQLPLFAEGPRIEEP 878
>sp|Q7W9W1|DNAE2_BORPA Error-prone DNA polymerase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 33 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 69
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q7WHW8|DNAE2_BORBR Error-prone DNA polymerase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 33 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 69
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q47EP3|DNAE2_DECAR Error-prone DNA polymerase OS=Dechloromonas aromatica (strain RCB)
GN=dnaE2 PE=3 SV=1
Length = 1027
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEK 78
NS+P+GFYSP +Q R H + + P V + W D+ L E+
Sbjct: 752 NSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDW--DSRLDER 792
>sp|Q48IB1|DNAE2_PSE14 Error-prone DNA polymerase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 39 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 75
NS P+GFYSP LQ R H I++ P V W D SL
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDW--DCSL 786
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,446,241
Number of Sequences: 539616
Number of extensions: 3578750
Number of successful extensions: 5710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5621
Number of HSP's gapped (non-prelim): 82
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)