Query 028484
Match_columns 208
No_of_seqs 245 out of 1043
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6m_A Tubulin-specific chaper 100.0 4.2E-35 1.5E-39 214.0 9.4 81 121-201 3-83 (84)
2 1whg_A Tubulin specific chaper 100.0 3.9E-35 1.3E-39 225.4 9.1 99 102-201 6-112 (113)
3 1lpl_A Hypothetical 25.4 kDa p 100.0 5.8E-35 2E-39 218.4 9.8 84 117-201 5-91 (95)
4 2e3h_A Restin; CAP-Gly, cytopl 100.0 1.2E-31 4E-36 198.5 9.0 79 123-203 1-79 (90)
5 1t0y_A Tubulin folding cofacto 100.0 7.1E-31 2.4E-35 203.7 7.5 95 1-99 28-122 (122)
6 1whh_A Clipr-59; microtubule b 100.0 2.5E-30 8.6E-35 195.2 8.6 78 120-199 22-100 (102)
7 3rdv_A CAP-Gly domain-containi 100.0 5E-30 1.7E-34 182.6 8.3 69 123-193 2-70 (72)
8 2cp6_A Restin; microtubule bin 100.0 6.7E-30 2.3E-34 207.9 9.9 81 121-203 36-116 (172)
9 2e3i_A Restin; CAP-Gly, cytopl 100.0 9.3E-30 3.2E-34 186.9 8.7 75 123-199 2-77 (86)
10 1txq_A Dynactin 1; protein com 100.0 1.2E-29 4E-34 188.9 9.0 76 119-195 8-83 (93)
11 2cp2_A CLIP-115, KIAA0291; mic 100.0 1E-29 3.5E-34 189.8 8.0 75 119-195 14-88 (95)
12 2cp3_A CLIP-115, KIAA0291; mic 100.0 3.3E-29 1.1E-33 183.2 8.8 75 121-197 5-79 (84)
13 1whk_A 1700024K14RIK, riken cD 100.0 1.8E-29 6.3E-34 187.1 7.2 77 121-198 10-86 (91)
14 1whl_A Cylindromatosis tumor s 100.0 3.6E-29 1.2E-33 187.1 8.5 78 121-199 5-93 (95)
15 2z0w_A CAP-Gly domain-containi 100.0 1.9E-29 6.6E-34 188.6 7.0 75 121-197 8-83 (96)
16 2coz_A CAP350, centrosome-asso 100.0 5.9E-29 2E-33 193.0 9.5 77 119-199 27-103 (122)
17 1ixd_A Cylindromatosis tumour- 100.0 6.8E-29 2.3E-33 188.1 9.5 81 121-202 15-98 (104)
18 2coy_A Dynactin-1; microtubule 100.0 6.8E-29 2.3E-33 190.2 9.3 76 120-196 30-105 (112)
19 2cp0_A Clipr-59 protein, clipr 100.0 4E-29 1.4E-33 186.5 7.7 73 121-195 14-86 (95)
20 1whj_A 1700024K14RIK, riken cD 100.0 6.9E-29 2.4E-33 187.3 8.3 77 121-199 22-99 (102)
21 2cow_A Kinesin-like protein KI 100.0 1.1E-28 3.7E-33 185.6 8.3 78 119-198 19-97 (100)
22 2cp5_A Restin; microtubule bin 99.9 2.3E-28 7.9E-33 193.5 8.9 75 119-195 60-134 (141)
23 1whm_A Cylindromatosis tumor s 99.9 1.3E-27 4.4E-32 176.5 8.0 73 120-192 6-82 (92)
24 4b6w_A Tubulin-specific chaper 99.7 1.3E-18 4.3E-23 127.3 6.1 62 1-62 25-86 (86)
25 2kj6_A Tubulin folding cofacto 99.6 5.8E-17 2E-21 121.0 3.5 61 1-61 37-97 (97)
26 1wjn_A Tubulin-folding protein 99.6 9.1E-16 3.1E-20 113.6 6.9 63 1-63 33-96 (97)
27 1v6e_A Cytoskeleton-associated 99.6 9.7E-16 3.3E-20 113.1 6.8 66 1-66 29-94 (95)
28 2kjr_A CG11242; UBL, ubiquitin 99.5 1.4E-14 4.9E-19 107.6 3.9 57 1-58 38-94 (95)
29 1wxv_A BAG-family molecular ch 99.0 2.3E-10 7.7E-15 83.2 3.5 56 1-62 32-87 (92)
30 3m63_B Ubiquitin domain-contai 98.9 7.7E-10 2.6E-14 82.4 4.8 54 1-61 48-101 (101)
31 2bwf_A Ubiquitin-like protein 98.9 9.3E-10 3.2E-14 76.5 4.4 53 1-60 24-76 (77)
32 1uel_A HHR23B, UV excision rep 98.9 1.7E-09 5.9E-14 79.2 5.9 59 1-66 21-82 (95)
33 2wyq_A HHR23A, UV excision rep 98.9 8.7E-10 3E-14 78.3 4.1 55 1-62 26-83 (85)
34 1wf9_A NPL4 family protein; be 98.9 3.8E-10 1.3E-14 84.9 2.2 63 1-63 28-98 (107)
35 3phx_B Ubiquitin-like protein 98.9 1E-09 3.4E-14 77.2 3.9 50 1-57 25-74 (79)
36 1v5o_A 1700011N24RIK protein; 98.9 8.6E-10 2.9E-14 82.0 3.6 57 1-63 32-88 (102)
37 2faz_A Ubiquitin-like containi 98.9 2E-09 6.8E-14 75.3 4.7 51 1-58 25-75 (78)
38 2kd0_A LRR repeats and ubiquit 98.8 3.7E-09 1.3E-13 76.1 5.2 52 1-59 32-83 (85)
39 3plu_A Ubiquitin-like modifier 98.8 2E-09 7E-14 79.6 3.8 50 1-57 42-91 (93)
40 2kk8_A Uncharacterized protein 98.8 9.7E-10 3.3E-14 79.2 1.9 51 1-57 31-81 (84)
41 4ajy_B Transcription elongatio 98.8 3.7E-09 1.3E-13 81.3 5.3 68 1-82 22-96 (118)
42 2klc_A Ubiquilin-1; ubiquitin- 98.8 4.8E-09 1.6E-13 77.9 5.0 54 1-61 45-98 (101)
43 4fbj_B NEDD8; effector-HOST ta 98.8 4.6E-09 1.6E-13 75.9 4.6 51 1-58 21-71 (88)
44 2kan_A Uncharacterized protein 98.8 2.4E-09 8.4E-14 78.6 3.2 53 1-60 35-88 (94)
45 3v6c_B Ubiquitin; structural g 98.8 3.6E-09 1.2E-13 76.6 3.9 50 1-57 38-87 (91)
46 1ndd_A NEDD8, protein (ubiquit 98.8 4.1E-09 1.4E-13 72.6 3.9 50 1-57 21-70 (76)
47 1ttn_A DC-UBP, dendritic cell- 98.8 3.4E-09 1.2E-13 79.2 3.5 55 1-62 44-98 (106)
48 3n3k_B Ubiquitin; hydrolase, p 98.8 6E-09 2E-13 73.7 4.5 51 1-58 24-74 (85)
49 1v86_A DNA segment, CHR 7, way 98.8 1.2E-09 4.1E-14 80.4 0.8 52 1-60 37-88 (95)
50 2dzi_A Ubiquitin-like protein 98.8 4.3E-09 1.5E-13 73.8 3.5 50 1-57 28-77 (81)
51 3m62_B UV excision repair prot 98.8 7.9E-09 2.7E-13 77.4 5.1 56 1-63 22-77 (106)
52 1we6_A Splicing factor, putati 98.7 7.2E-09 2.4E-13 78.0 4.7 50 1-57 52-101 (111)
53 4eew_A Large proline-rich prot 98.7 5.2E-09 1.8E-13 75.0 3.7 49 1-57 38-86 (88)
54 3dbh_I NEDD8; cell cycle, acti 98.7 4.4E-09 1.5E-13 74.9 3.3 50 1-57 33-82 (88)
55 4dwf_A HLA-B-associated transc 98.7 6.8E-09 2.3E-13 74.7 4.3 56 1-64 26-81 (90)
56 3a9j_A Ubiquitin; protein comp 98.7 6.8E-09 2.3E-13 71.5 4.0 50 1-57 21-70 (76)
57 1wju_A NEDD8 ultimate buster-1 98.7 7E-09 2.4E-13 77.7 4.1 56 1-63 40-95 (100)
58 1wh3_A 59 kDa 2'-5'-oligoadeny 98.7 4.6E-09 1.6E-13 74.9 2.9 51 1-58 28-78 (87)
59 1wy8_A NP95-like ring finger p 98.7 5.2E-09 1.8E-13 75.1 3.0 51 1-58 30-80 (89)
60 4hcn_B Polyubiquitin, ubiquiti 98.7 7.6E-09 2.6E-13 76.1 3.9 50 1-57 43-92 (98)
61 3mtn_B UBA80, ubcep1, ubiquiti 98.7 9E-09 3.1E-13 72.6 3.9 51 1-58 24-74 (85)
62 2hj8_A Interferon-induced 17 k 98.7 3.2E-09 1.1E-13 76.6 1.6 53 1-60 25-77 (88)
63 1sif_A Ubiquitin; hydrophobic 98.7 9.7E-09 3.3E-13 74.1 3.9 51 1-58 30-80 (88)
64 3k9o_B Ubiquitin, UBB+1; E2-25 98.7 1.1E-08 3.8E-13 74.3 4.0 51 1-58 22-72 (96)
65 1j8c_A Ubiquitin-like protein 98.7 1.9E-08 6.4E-13 77.7 5.3 54 1-61 52-105 (125)
66 2l7r_A Ubiquitin-like protein 98.7 6.1E-09 2.1E-13 76.1 2.2 50 1-57 38-87 (93)
67 3b08_A Polyubiquitin-C, ubiqui 98.7 2.3E-08 7.9E-13 77.6 5.6 85 1-100 21-106 (152)
68 3b1l_X E3 ubiquitin-protein li 98.1 2.5E-09 8.4E-14 74.4 0.0 50 1-57 21-70 (76)
69 3vdz_A Ubiquitin-40S ribosomal 98.7 1.8E-08 6.1E-13 76.0 4.7 50 1-57 56-105 (111)
70 2kdi_A Ubiquitin, vacuolar pro 98.7 2.1E-08 7.2E-13 76.1 5.0 54 1-61 30-83 (114)
71 2fnj_B Transcription elongatio 98.7 9.3E-09 3.2E-13 79.1 3.0 61 1-74 22-89 (118)
72 1wx8_A Riken cDNA 4931431F19; 98.7 9.8E-09 3.3E-13 74.9 2.9 54 1-61 37-90 (96)
73 1wia_A Hypothetical ubiquitin- 98.7 5.2E-08 1.8E-12 70.9 6.8 56 1-65 28-83 (95)
74 4dbg_A Ranbp-type and C3HC4-ty 98.6 1.7E-08 5.8E-13 76.2 3.9 53 1-60 47-100 (105)
75 1x1m_A Ubiquitin-like protein 98.6 1.5E-08 5.3E-13 75.8 3.7 55 1-62 45-102 (107)
76 1we7_A SF3A1 protein; structur 98.6 1.2E-08 4.1E-13 77.3 2.9 51 1-58 56-106 (115)
77 1wx7_A Ubiquilin 3; ubiquitin- 98.6 1.4E-08 4.9E-13 75.7 3.1 53 1-60 37-89 (106)
78 3rt3_B Ubiquitin-like protein 98.6 5.8E-08 2E-12 76.7 6.6 88 1-101 23-112 (159)
79 1yqb_A Ubiquilin 3; structural 98.6 1.1E-08 3.9E-13 75.8 2.4 53 1-60 42-94 (100)
80 1yx5_B Ubiquitin; proteasome, 98.6 3E-08 1E-12 72.6 4.6 54 1-61 21-74 (98)
81 2ojr_A Ubiquitin; lanthide-bin 98.6 4E-08 1.4E-12 73.9 5.2 50 1-57 56-105 (111)
82 4a20_A Ubiquitin-like protein 98.6 4E-08 1.4E-12 73.1 5.1 54 1-61 42-97 (98)
83 3u30_A Ubiquitin, linear DI-ub 98.6 4.7E-08 1.6E-12 78.4 5.9 86 1-101 41-127 (172)
84 1uh6_A Ubiquitin-like 5; beta- 98.6 1.3E-08 4.5E-13 76.2 2.1 50 1-57 49-98 (100)
85 1wgg_A Ubiquitin carboxyl-term 98.6 2.8E-08 9.5E-13 73.2 3.9 53 1-61 28-80 (96)
86 2lxa_A Ubiquitin-like protein 98.6 1.5E-08 5.3E-13 73.7 2.4 52 1-59 24-77 (87)
87 1v5t_A 8430435I17RIK protein; 98.6 2.4E-08 8.3E-13 72.4 2.8 52 1-59 28-82 (90)
88 2dzj_A Synaptic glycoprotein S 98.6 3.3E-08 1.1E-12 71.9 3.5 54 1-59 34-88 (88)
89 1wgd_A Homocysteine-responsive 98.6 2.7E-08 9.2E-13 72.3 2.9 52 1-59 30-85 (93)
90 2uyz_B Small ubiquitin-related 98.5 2.2E-08 7.5E-13 70.2 2.2 51 1-58 24-74 (79)
91 2dzm_A FAS-associated factor 1 98.5 1.7E-08 5.8E-13 75.4 1.4 51 1-57 29-79 (100)
92 2kzr_A Ubiquitin thioesterase 98.5 7.3E-08 2.5E-12 69.2 4.3 59 1-61 21-79 (86)
93 3l0w_B Monoubiquitinated proli 98.5 6.6E-08 2.3E-12 78.2 4.5 52 1-59 21-72 (169)
94 3rt3_B Ubiquitin-like protein 98.5 6E-08 2.1E-12 76.5 3.9 51 1-58 102-152 (159)
95 3u5e_m 60S ribosomal protein L 98.5 1.5E-08 5E-13 78.3 0.0 51 1-58 21-71 (128)
96 1wyw_B Ubiquitin-like protein 98.5 4.5E-08 1.5E-12 71.9 2.3 50 1-57 42-91 (97)
97 2kdb_A Homocysteine-responsive 98.5 5.4E-08 1.8E-12 72.4 2.6 50 1-57 46-99 (99)
98 1v2y_A 3300001G02RIK protein; 98.4 3.5E-08 1.2E-12 74.3 0.8 52 1-58 28-94 (105)
99 3q3f_A Ribonuclease/ubiquitin 98.4 1E-07 3.5E-12 78.7 3.2 51 1-58 126-176 (189)
100 3b08_A Polyubiquitin-C, ubiqui 98.4 1.7E-07 5.8E-12 72.6 4.0 51 1-58 97-147 (152)
101 3u5c_f 40S ribosomal protein S 98.4 3.7E-08 1.3E-12 78.7 0.0 50 1-57 21-70 (152)
102 2daf_A FLJ35834 protein; hypot 98.3 3.9E-07 1.3E-11 70.0 2.9 53 1-60 37-89 (118)
103 1se9_A Ubiquitin family; ubiqu 98.2 9.6E-07 3.3E-11 68.6 4.6 51 1-58 38-101 (126)
104 3shq_A UBLCP1; phosphatase, hy 98.1 1.5E-06 5.1E-11 77.0 4.7 58 1-62 25-82 (320)
105 1wgh_A Ubiquitin-like 3, HCG-1 98.1 3E-06 1E-10 64.8 5.7 51 1-58 37-97 (116)
106 2gow_A HCG-1 protein, ubiquiti 98.0 3.8E-06 1.3E-10 65.0 3.6 51 1-58 38-98 (125)
107 1oqy_A HHR23A, UV excision rep 97.8 1.3E-05 4.4E-10 72.3 4.4 50 1-57 28-81 (368)
108 2io1_B Small ubiquitin-related 97.6 6E-05 2E-09 55.2 4.5 51 2-59 29-79 (94)
109 2xzm_9 RPS31E; ribosome, trans 97.5 1.2E-05 4.2E-10 66.3 0.0 45 1-57 21-65 (189)
110 1wm3_A Ubiquitin-like protein 97.5 0.00013 4.4E-09 50.5 4.9 49 2-57 23-71 (72)
111 2io0_B Small ubiquitin-related 97.3 0.00029 1E-08 51.3 5.1 51 2-59 27-77 (91)
112 3a4r_A Nfatc2-interacting prot 97.2 0.00017 5.7E-09 51.0 2.9 49 2-57 30-78 (79)
113 2d07_B Ubiquitin-like protein 97.2 0.00036 1.2E-08 50.8 4.8 50 2-58 39-88 (93)
114 1wz0_A Ubiquitin-like protein 97.1 0.00044 1.5E-08 51.6 4.0 50 2-58 46-95 (104)
115 2eke_C Ubiquitin-like protein 96.9 0.00099 3.4E-08 49.9 4.4 50 2-58 52-101 (106)
116 4efo_A Serine/threonine-protei 96.5 0.0014 4.7E-08 48.3 2.7 41 2-47 35-75 (94)
117 2k8h_A Small ubiquitin protein 96.4 0.00064 2.2E-08 51.3 0.6 50 2-58 48-97 (110)
118 2pjh_A Protein NPL4, nuclear p 95.9 0.0019 6.4E-08 45.7 0.8 55 1-57 24-78 (80)
119 3kyd_D Small ubiquitin-related 95.3 0.024 8.2E-07 43.0 5.1 49 2-57 62-110 (115)
120 3pge_A SUMO-modified prolifera 94.9 0.024 8.3E-07 46.9 4.4 50 2-58 50-99 (200)
121 3tix_A Ubiquitin-like protein 93.8 0.05 1.7E-06 45.1 3.9 51 2-59 78-128 (207)
122 3jyu_A Ubiquitin carboxyl-term 92.3 0.22 7.5E-06 41.5 5.8 59 1-60 162-221 (231)
123 3h6n_A Plexin-D1; structural g 92.0 0.36 1.2E-05 37.1 6.3 56 1-57 27-102 (127)
124 4a3p_A Ubiquitin carboxyl-term 91.8 0.11 3.9E-06 42.8 3.5 59 1-60 150-209 (217)
125 4e74_A Plexin-A4; RBD, structu 91.7 0.19 6.4E-06 38.2 4.2 57 1-57 37-112 (117)
126 2r2o_A Plexin-B1; effector dom 91.1 0.19 6.4E-06 39.3 3.8 59 1-59 51-128 (138)
127 3v7o_A Minor nucleoprotein VP3 89.4 0.068 2.3E-06 44.8 0.0 50 2-58 42-91 (227)
128 3kuz_A Plexin-C1; structural g 88.3 0.58 2E-05 35.9 4.5 57 1-57 49-124 (126)
129 3goe_A DNA repair protein RAD6 86.4 1 3.5E-05 31.9 4.6 49 2-57 31-80 (82)
130 4e71_A Plexin-B2, MM1; transme 86.0 0.65 2.2E-05 34.9 3.6 55 1-57 34-108 (111)
131 3uf8_A Ubiquitin-like protein 79.6 2 6.7E-05 35.1 4.4 50 2-58 42-91 (209)
132 3ix6_A TS, tsase, thymidylate 79.5 0.37 1.3E-05 43.1 0.0 51 2-59 42-92 (360)
133 3u30_A Ubiquitin, linear DI-ub 78.0 1 3.5E-05 35.2 2.1 21 37-57 146-166 (172)
134 1oey_A P67-PHOX, neutrophil cy 75.6 1.3 4.5E-05 31.5 1.9 39 1-40 24-63 (83)
135 3ai5_A Yeast enhanced green fl 74.4 4.5 0.00015 35.2 5.5 20 38-57 284-303 (307)
136 3onh_A Ubiquitin-activating en 73.4 7.4 0.00025 29.7 5.8 57 1-60 20-80 (127)
137 1vd2_A Protein kinase C, IOTA 71.9 1 3.6E-05 32.4 0.6 57 1-57 26-87 (89)
138 2kvr_A Ubiquitin carboxyl-term 71.9 1.4 4.9E-05 33.6 1.5 27 1-27 66-92 (130)
139 2jxx_A Nfatc2-interacting prot 71.3 3 0.0001 30.3 3.0 49 2-57 48-96 (97)
140 4da1_A Protein phosphatase 1K, 69.0 0.99 3.4E-05 40.0 0.0 50 2-58 51-100 (389)
141 3hm6_X Plexin-B1; structural g 68.0 10 0.00035 36.2 6.7 56 1-57 284-359 (644)
142 3ig3_A Plxna3 protein; plexin 67.0 11 0.00037 36.0 6.6 58 1-58 257-333 (627)
143 2bps_A YUKD protein; ubiquitin 65.4 3.2 0.00011 29.2 2.1 51 1-56 27-80 (81)
144 1pqs_A Cell division control p 58.1 4.6 0.00016 28.1 1.8 34 1-34 12-50 (77)
145 3ivf_A Talin-1; FERM domain, c 45.0 17 0.00058 31.5 3.7 55 1-56 23-81 (371)
146 3qx1_A FAS-associated factor 1 43.4 37 0.0013 23.0 4.6 54 2-58 29-82 (84)
147 2ylm_A Ubiquitin carboxyl-term 40.3 10 0.00035 35.2 1.6 27 1-27 46-72 (530)
148 3cnr_A Type IV fimbriae assemb 37.0 39 0.0013 25.0 4.1 40 121-162 39-89 (117)
149 1ujs_A Actin-binding LIM prote 35.1 15 0.0005 26.3 1.4 27 70-100 48-74 (88)
150 3pie_A 5'->3' exoribonuclease 35.0 44 0.0015 34.2 5.3 63 121-192 1063-1132(1155)
151 1q1o_A Cell division control p 34.5 13 0.00043 27.2 1.0 34 1-34 33-71 (98)
152 3lnn_A Membrane fusion protein 33.4 1.9E+02 0.0064 24.2 8.5 73 120-193 218-296 (359)
153 2kc2_A Talin-1, F1; FERM, adhe 32.5 15 0.0005 28.0 1.1 19 1-19 32-50 (128)
154 1wj4_A KIAA0794 protein; UBX d 32.2 82 0.0028 23.3 5.3 59 2-63 65-123 (124)
155 1tyg_B YJBS; alpha beta barrel 31.9 93 0.0032 21.6 5.2 12 46-57 70-81 (87)
156 2kss_A Carotenogenesis protein 29.5 8.3 0.00028 27.6 -0.7 38 122-164 36-75 (106)
157 1y8x_B Ubiquitin-activating en 29.5 21 0.0007 25.9 1.4 22 39-60 64-85 (98)
158 3qa8_A MGC80376 protein; kinas 28.1 24 0.00081 33.7 2.0 26 1-26 332-357 (676)
159 2e6z_A Transcription elongatio 27.5 54 0.0019 21.1 3.1 19 121-139 5-23 (59)
160 4eut_A Serine/threonine-protei 27.1 22 0.00074 30.5 1.4 24 2-25 333-356 (396)
161 2cu3_A Unknown function protei 27.1 1.1E+02 0.0038 19.4 4.7 45 1-57 14-58 (64)
162 2l76_A Nfatc2-interacting prot 26.6 31 0.001 24.9 1.9 43 10-59 50-92 (95)
163 1yu8_X Villin; alpha helix, 3- 23.7 17 0.00058 24.6 0.0 27 70-100 33-59 (67)
164 1nz9_A Transcription antitermi 23.3 86 0.0029 19.7 3.5 22 123-144 4-28 (58)
165 1wy3_A Villin; structural prot 22.6 14 0.00047 21.9 -0.5 20 77-100 8-27 (35)
166 2kl0_A Putative thiamin biosyn 22.3 1.1E+02 0.0038 20.3 4.0 46 1-58 15-60 (73)
167 1wmh_B Partitioning defective- 22.2 52 0.0018 23.3 2.3 54 2-57 29-84 (86)
168 2k6m_S Supervillin; SVHP, HP, 21.3 19 0.00064 24.4 -0.1 27 70-100 33-59 (67)
169 3udc_A Small-conductance mecha 21.3 70 0.0024 26.7 3.4 25 121-147 126-150 (285)
170 1f0z_A THis protein; ubiquitin 21.0 1E+02 0.0035 19.6 3.6 45 1-57 16-60 (66)
171 2ktr_A Sequestosome-1; autopha 21.0 57 0.0019 24.4 2.5 34 2-35 58-92 (117)
172 1ryj_A Unknown; beta/alpha pro 20.7 1.8E+02 0.0062 18.8 5.3 11 47-57 54-64 (70)
173 1und_A Advillin, P92; actin bi 20.4 16 0.00056 21.8 -0.5 21 76-100 9-29 (37)
174 2kkc_A Sequestosome-1; P62, PB 20.4 50 0.0017 24.0 2.0 34 2-35 43-77 (102)
175 1qzp_A Dematin; villin headpie 20.3 17 0.00057 24.7 -0.6 27 70-100 34-60 (68)
No 1
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=100.00 E-value=4.2e-35 Score=213.98 Aligned_cols=81 Identities=49% Similarity=1.084 Sum_probs=74.7
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER 200 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~ 200 (208)
...|+||+||+|.++.++|||||+|+++..++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||.
T Consensus 3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Ppe 82 (84)
T 4b6m_A 3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPPE 82 (84)
T ss_dssp --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCCC
T ss_pred ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCCC
Confidence 35799999999976789999999999866579999999999999999999999999999999999999999999999986
Q ss_pred C
Q 028484 201 D 201 (208)
Q Consensus 201 d 201 (208)
|
T Consensus 83 ~ 83 (84)
T 4b6m_A 83 V 83 (84)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=100.00 E-value=3.9e-35 Score=225.37 Aligned_cols=99 Identities=45% Similarity=0.824 Sum_probs=86.0
Q ss_pred cCCCchhhh-----ccccchhhhhcCCCCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECC
Q 028484 102 SQNPSAVEN-----KLSNNYMEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKG 173 (208)
Q Consensus 102 ~~~p~~~~~-----~~~~~~~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G 173 (208)
+|||++.++ +..+++++..+..+.||+||.|. ++ .++|||||||++++ .+|.|+|||||+|.||||||++|
T Consensus 6 rf~~~~~~~~~~~~~~~~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G 84 (113)
T 1whg_A 6 SGNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDF-KPGYWVGVRYDEPLGKNDGSVNG 84 (113)
T ss_dssp CCCSTHHHHHHHHHHHTTHHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSS-SSSEEEEEEESSSCCSBBSEETT
T ss_pred ccChhhhhhhhhHhhhhhhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECC
Confidence 688886432 12233444566789999999996 34 69999999999999 89999999999999999999999
Q ss_pred EEeeecCCCceeeecCCCCccCCCCCCC
Q 028484 174 VRYFECPPLHGAMVRPDKVKVGDYPERD 201 (208)
Q Consensus 174 ~rYF~c~~~~G~Fv~~~~v~~g~fp~~d 201 (208)
+|||+|+|+||+||||++|++||||++|
T Consensus 85 ~rYF~C~p~~GiFvr~~~v~~gdfp~~~ 112 (113)
T 1whg_A 85 KRYFECQAKYGAFVKPSAVTVGDSGPSS 112 (113)
T ss_dssp EECSCCCTTTEEEECGGGEEEEECCSSC
T ss_pred EEEeeeCCCeEEEECHHHeEECCCCCCC
Confidence 9999999999999999999999999976
No 3
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=100.00 E-value=5.8e-35 Score=218.36 Aligned_cols=84 Identities=55% Similarity=1.048 Sum_probs=78.3
Q ss_pred hhhhcCCCCcCCEEEEc-CC--CceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484 117 MEDLCSNITVGDRCEVD-PG--AKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 193 (208)
Q Consensus 117 ~~~~~~~~~vG~rv~v~-~~--~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 193 (208)
+++.+..++||+||+|. ++ .++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus 5 ~~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~ 83 (95)
T 1lpl_A 5 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKF-KEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVK 83 (95)
T ss_dssp HHHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEE
T ss_pred hhhhhhcCCCCCEEEEccCCCCceEEEEEEecccCC-CCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHce
Confidence 34556689999999996 45 68999999999999 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 028484 194 VGDYPERD 201 (208)
Q Consensus 194 ~g~fp~~d 201 (208)
+||||++|
T Consensus 84 ~gdfp~~d 91 (95)
T 1lpl_A 84 VGDFPELS 91 (95)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99999988
No 4
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.97 E-value=1.2e-31 Score=198.51 Aligned_cols=79 Identities=42% Similarity=0.856 Sum_probs=72.8
Q ss_pred CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCCCC
Q 028484 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPERDP 202 (208)
Q Consensus 123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~ 202 (208)
+|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||++++|+.++||++.+
T Consensus 1 ~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p 78 (90)
T 2e3h_A 1 ELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP 78 (90)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred CCcCCCEEEEC-CCCEEEEEEeccCCC-CCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence 47899999996 578999999999999 8999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 028484 203 F 203 (208)
Q Consensus 203 ~ 203 (208)
.
T Consensus 79 ~ 79 (90)
T 2e3h_A 79 A 79 (90)
T ss_dssp -
T ss_pred c
Confidence 4
No 5
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.97 E-value=7.1e-31 Score=203.70 Aligned_cols=95 Identities=36% Similarity=0.622 Sum_probs=58.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCCCcceeee
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYT 80 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~s~vek~~ 80 (208)
+||++||+||+.++||||++|+|++...+|+.++.|.+|+++|++|++++|++|||+|++|++ ++ |+|+|+|+||+
T Consensus 28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~--~~--~~d~s~v~ky~ 103 (122)
T 1t0y_A 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN--ED--FKDESMVEKYE 103 (122)
T ss_dssp SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC--CC-------------
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC--CC--ccccccceeee
Confidence 599999999999999999999999986666766667789999999999999999999999988 33 99999999999
Q ss_pred cCHHHHhcchhhHHHHHHH
Q 028484 81 ISEEEYSKRDGTFRKFKEK 99 (208)
Q Consensus 81 ls~e~Y~~r~dtv~~~k~~ 99 (208)
||+|+|++|+||||+||++
T Consensus 104 ~~~e~Y~~r~~tv~~~k~~ 122 (122)
T 1t0y_A 104 MSDDTYGKRTDSVRAWKKK 122 (122)
T ss_dssp -------------------
T ss_pred cCHHHHhcchhHHHHHhhC
Confidence 9999999999999999985
No 6
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=2.5e-30 Score=195.19 Aligned_cols=78 Identities=42% Similarity=0.927 Sum_probs=72.8
Q ss_pred hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc-cCCCC
Q 028484 120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK-VGDYP 198 (208)
Q Consensus 120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp 198 (208)
.+..++||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ ++|||
T Consensus 22 ~~~~~~VG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p 99 (102)
T 1whh_A 22 EGAKAEVGDQVLVA-GQKQGIVRFYGKTDF-APGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99 (102)
T ss_dssp SCCSSCTTSEEEET-TTEEEEEEEEEECSS-SSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred ccccCcCCCEEEEC-CCcEEEEEEeeecCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence 35679999999996 578999999999999 8999999999999999999999999999999999999999999 56898
Q ss_pred C
Q 028484 199 E 199 (208)
Q Consensus 199 ~ 199 (208)
+
T Consensus 100 ~ 100 (102)
T 1whh_A 100 S 100 (102)
T ss_dssp T
T ss_pred C
Confidence 6
No 7
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.96 E-value=5e-30 Score=182.58 Aligned_cols=69 Identities=48% Similarity=1.029 Sum_probs=65.7
Q ss_pred CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCc
Q 028484 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVK 193 (208)
Q Consensus 123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~ 193 (208)
+++||+||+|. +.++|+|||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|+
T Consensus 2 ~~~vG~rv~v~-g~~~G~VryvG~~~~-~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT 70 (72)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred CcccCCEEEEC-CCCEEEEEEeeeCCC-CCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence 58999999997 567999999999999 8999999999999999999999999999999999999999985
No 8
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=6.7e-30 Score=207.95 Aligned_cols=81 Identities=41% Similarity=0.822 Sum_probs=76.2
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCCCC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYPER 200 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~ 200 (208)
...|+||+||+|. +.++|+|||||++++ ..|.|+|||||+|.|||||+|+|+|||+|+|+||+||++++|.++|||++
T Consensus 36 ~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~~ 113 (172)
T 2cp6_A 36 ERELKIGDRVLVG-GTKAGVVRFLGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPST 113 (172)
T ss_dssp SSCCCSSCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSC
T ss_pred CccCccCCEEEEC-CCceEEEEEeCcCCC-CCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCCC
Confidence 4579999999996 578999999999999 89999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 028484 201 DPF 203 (208)
Q Consensus 201 d~~ 203 (208)
.+.
T Consensus 114 ~p~ 116 (172)
T 2cp6_A 114 TPA 116 (172)
T ss_dssp CSC
T ss_pred Ccc
Confidence 754
No 9
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=9.3e-30 Score=186.91 Aligned_cols=75 Identities=44% Similarity=0.937 Sum_probs=69.5
Q ss_pred CCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CCCC
Q 028484 123 NITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE 199 (208)
Q Consensus 123 ~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~ 199 (208)
.|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... +|++
T Consensus 2 ~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 2 DFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred CccCCCEEEEC-CCcEEEEEEeeeCCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence 58999999997 578999999999999 899999999999999999999999999999999999999999998 5764
No 10
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.96 E-value=1.2e-29 Score=188.94 Aligned_cols=76 Identities=41% Similarity=0.698 Sum_probs=69.2
Q ss_pred hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484 119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 195 (208)
Q Consensus 119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 195 (208)
..+..++||+||.|....++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+|||+++|++.
T Consensus 8 ~~~~~~~vG~rv~v~~~~~~GtVryvG~~~~-~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~ 83 (93)
T 1txq_A 8 ASARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF 83 (93)
T ss_dssp ---CCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred cccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence 3456799999999963468999999999999 899999999999999999999999999999999999999999986
No 11
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.96 E-value=1e-29 Score=189.79 Aligned_cols=75 Identities=48% Similarity=0.992 Sum_probs=70.7
Q ss_pred hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484 119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 195 (208)
Q Consensus 119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 195 (208)
+.+..++||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus 14 ~~~~~~~vG~rV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 14 DFLGDFVVGERVWVN-GVKPGVVQYLGETQF-APGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ 88 (95)
T ss_dssp SSCCSCCTTCEEEGG-GSCEEEEEEEEECSS-SCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred hhhhcCcCCCEEEEC-CceEEEEEEecccCC-CCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence 556779999999997 578999999999999 899999999999999999999999999999999999999999875
No 12
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=3.3e-29 Score=183.22 Aligned_cols=75 Identities=47% Similarity=0.864 Sum_probs=69.5
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDY 197 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f 197 (208)
...++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+|||+++|..-..
T Consensus 5 ~~~~~vG~rv~v~-g~~~GtVryvG~~~~-~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~ 79 (84)
T 2cp3_A 5 SSGLRLGDRVLVG-GTKTGVVRYVGETDF-AKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGS 79 (84)
T ss_dssp SCSCCTTCEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCC
T ss_pred ccccccCCEEEEC-CCCeEEEEEeccCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEccc
Confidence 4569999999996 578999999999999 89999999999999999999999999999999999999999987543
No 13
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=1.8e-29 Score=187.08 Aligned_cols=77 Identities=30% Similarity=0.649 Sum_probs=71.2
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp 198 (208)
...++||+||+|....++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++...+
T Consensus 10 ~~~~~vG~rV~V~~~~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~ 86 (91)
T 1whk_A 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDF-ASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGIS 86 (91)
T ss_dssp CCCCCSSCEEEESSSCCEEEECCCEECSS-SSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCC
T ss_pred CccccCCCEEEECCCCeEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCC
Confidence 55799999999973379999999999999 899999999999999999999999999999999999999999886544
No 14
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=3.6e-29 Score=187.06 Aligned_cols=78 Identities=28% Similarity=0.495 Sum_probs=70.6
Q ss_pred cCCCCcCCEEEEc-CC---CceeEEEEecccC---CCCCCcEEEEEEeCC---CCCCCcEECCEEeeecCCCceeeecCC
Q 028484 121 CSNITVGDRCEVD-PG---AKRGVVKYVGQAE---SIAPGFWVGIQYDEP---LGKHNGIVKGVRYFECPPLHGAMVRPD 190 (208)
Q Consensus 121 ~~~~~vG~rv~v~-~~---~~~G~vryvG~~~---~~~~g~wvGVelde~---~GkndGs~~G~rYF~c~~~~G~Fv~~~ 190 (208)
+..|+||+||+|. ++ .++|||||||+++ + .+|.|+|||||+| .||||||++|+|||+|+|+||+||||+
T Consensus 5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~-~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~ 83 (95)
T 1whl_A 5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERT-VSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD 83 (95)
T ss_dssp CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSS-CCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred cccCcCCCEEEEecCCCccceeEEEEEeCccCcccC-CCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence 4679999999995 23 4899999999998 6 8999999999999 899999999999999999999999999
Q ss_pred CCccCC-CCC
Q 028484 191 KVKVGD-YPE 199 (208)
Q Consensus 191 ~v~~g~-fp~ 199 (208)
+|++.+ .|+
T Consensus 84 ~v~~~~~~p~ 93 (95)
T 1whl_A 84 KLELIESGPS 93 (95)
T ss_dssp GEEECCSCSC
T ss_pred HeEEcCcCCC
Confidence 999984 553
No 15
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=188.64 Aligned_cols=75 Identities=36% Similarity=0.811 Sum_probs=68.0
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY 197 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f 197 (208)
...++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|... +|
T Consensus 8 ~~~~~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~ 83 (96)
T 2z0w_A 8 EGELRLGERVLVV-GQRLGTIRFFGTTNF-APGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS 83 (96)
T ss_dssp ---CCTTCCCCCC-CCCCEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC-
T ss_pred cccCCCCCEEEEC-CCcEEEEEEeccCCC-CCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccch
Confidence 4569999999996 578999999999999 899999999999999999999999999999999999999999986 44
No 16
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=5.9e-29 Score=192.96 Aligned_cols=77 Identities=35% Similarity=0.817 Sum_probs=71.0
Q ss_pred hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCCCC
Q 028484 119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGDYP 198 (208)
Q Consensus 119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp 198 (208)
+.+..++||+||.|. +.++|||||||++++ .+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|. +||
T Consensus 27 ~~~~~l~VG~RV~V~-g~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p 102 (122)
T 2coz_A 27 DELFDFHIGDRVLIG-NVQPGILRFKGETSF-AKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP 102 (122)
T ss_dssp CSCSSCCTTEEEEET-TTEEEEEEEEEECSS-SSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred cccccCcCCCEEEEC-CCcEEEEEEecccCC-CCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence 445679999999997 579999999999999 8999999999999999999999999999999999999999998 455
Q ss_pred C
Q 028484 199 E 199 (208)
Q Consensus 199 ~ 199 (208)
+
T Consensus 103 e 103 (122)
T 2coz_A 103 E 103 (122)
T ss_dssp T
T ss_pred c
Confidence 3
No 17
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=6.8e-29 Score=188.12 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=74.4
Q ss_pred cCCCCcCCEEEEcC-CCceeEEEEecccCCCCCCcEEEEEE-eCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484 121 CSNITVGDRCEVDP-GAKRGVVKYVGQAESIAPGFWVGIQY-DEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY 197 (208)
Q Consensus 121 ~~~~~vG~rv~v~~-~~~~G~vryvG~~~~~~~g~wvGVel-de~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f 197 (208)
...|+||+||+|.. +.++|||||||++++ .+|.|+|||| |+|.|||||+++|+|||+|+|+||+|||+++|..+ .|
T Consensus 15 ~~~l~VG~RV~V~~~~~~~GtVryvG~v~~-~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPG-LNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SSCCCTTSEEEECSSSCCCEEEEEEECCSS-SCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred CcccccCCEEEECcCCCcEEEEEEecccCC-CCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceecccc
Confidence 45799999999972 368999999999999 8999999999 89999999999999999999999999999999998 69
Q ss_pred CCCCC
Q 028484 198 PERDP 202 (208)
Q Consensus 198 p~~d~ 202 (208)
..++.
T Consensus 94 ~~~~~ 98 (104)
T 1ixd_A 94 ASLQP 98 (104)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 87664
No 18
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=6.8e-29 Score=190.23 Aligned_cols=76 Identities=41% Similarity=0.711 Sum_probs=70.6
Q ss_pred hcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccCC
Q 028484 120 LCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVGD 196 (208)
Q Consensus 120 ~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~ 196 (208)
.+..++||+||.|....++|||||||++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus 30 ~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~ 105 (112)
T 2coy_A 30 SARPLRVGSRVEVIGKGHRGTVAYVGATLF-ATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE 105 (112)
T ss_dssp SCCCCCTTCEEEETTTCCEEEEEEEECCSS-SSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCC-CCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence 346799999999963468999999999999 8999999999999999999999999999999999999999999874
No 19
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=4e-29 Score=186.54 Aligned_cols=73 Identities=42% Similarity=0.863 Sum_probs=68.8
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 195 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 195 (208)
+..++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|...
T Consensus 14 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~ 86 (95)
T 2cp0_A 14 ALGLRLGDRVLLD-GQKTGTLRFCGTTEF-ASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA 86 (95)
T ss_dssp HHTCCTTCEEEET-TTEEEEEEEEECCSS-SCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred ccCCCCCCEEEEC-CCCeEEEEEecccCC-CCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence 4569999999996 578999999999999 899999999999999999999999999999999999999999874
No 20
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.95 E-value=6.9e-29 Score=187.32 Aligned_cols=77 Identities=38% Similarity=0.697 Sum_probs=71.0
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CCCC
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DYPE 199 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~ 199 (208)
+..++||+||+|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..- ++++
T Consensus 22 ~~~~~vG~RV~V~-g~~~GtVryvG~v~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~ 99 (102)
T 1whj_A 22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEF-ASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP 99 (102)
T ss_dssp HHTCCTTCEEEET-TTEEEEEEEEEECSS-SCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred hhcCcCCCEEEEC-CCCEEEEEEeeecCC-CCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence 4479999999996 578999999999999 899999999999999999999999999999999999999999875 5554
No 21
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=1.1e-28 Score=185.65 Aligned_cols=78 Identities=38% Similarity=0.752 Sum_probs=71.7
Q ss_pred hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC-CC
Q 028484 119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG-DY 197 (208)
Q Consensus 119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~f 197 (208)
.....|+||+||.|. +.++|||||+|++++ .+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|..- ..
T Consensus 19 ~~~~~l~vG~rV~V~-g~~~GtVryvG~~~~-~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~ 96 (100)
T 2cow_A 19 EVPEWLREGEFVTVG-AHKTGVVRYVGPADF-QEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG 96 (100)
T ss_dssp CCCSSCCTTCEEECS-SSCEEEEEEEECCSS-SSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCC
T ss_pred cCCccccCCCEEEEC-CCcEEEEEEeeeCCC-CCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCC
Confidence 445679999999996 579999999999998 899999999999999999999999999999999999999999886 45
Q ss_pred C
Q 028484 198 P 198 (208)
Q Consensus 198 p 198 (208)
|
T Consensus 97 p 97 (100)
T 2cow_A 97 P 97 (100)
T ss_dssp S
T ss_pred C
Confidence 5
No 22
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=2.3e-28 Score=193.54 Aligned_cols=75 Identities=44% Similarity=0.956 Sum_probs=70.7
Q ss_pred hhcCCCCcCCEEEEcCCCceeEEEEecccCCCCCCcEEEEEEeCCCCCCCcEECCEEeeecCCCceeeecCCCCccC
Q 028484 119 DLCSNITVGDRCEVDPGAKRGVVKYVGQAESIAPGFWVGIQYDEPLGKHNGIVKGVRYFECPPLHGAMVRPDKVKVG 195 (208)
Q Consensus 119 ~~~~~~~vG~rv~v~~~~~~G~vryvG~~~~~~~g~wvGVelde~~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g 195 (208)
+.+..|+||+||+|. +.++|+|||||++++ ..|.|+|||||+|.|||||+++|+|||+|+++||+|||+++|..+
T Consensus 60 ~~~~~l~VG~RV~V~-G~~~GtVRyvG~v~~-~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~ 134 (141)
T 2cp5_A 60 EFVDDFRVGERVWVN-GNKPGFIQFLGETQF-APGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK 134 (141)
T ss_dssp CCCCCCCTTCEEEET-TSCEEEEEEEEECSS-SSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred hhhhcCcCCCEEEEC-CCcEEEEEEeeecCC-CCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence 456779999999997 678999999999999 899999999999999999999999999999999999999999886
No 23
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=1.3e-27 Score=176.49 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=65.3
Q ss_pred hcCCCCcCCEEEEcCC--CceeEEEEecccCCC-CCCcEEEEEEeCCCCCCCcEECCEEee-ecCCCceeeecCCCC
Q 028484 120 LCSNITVGDRCEVDPG--AKRGVVKYVGQAESI-APGFWVGIQYDEPLGKHNGIVKGVRYF-ECPPLHGAMVRPDKV 192 (208)
Q Consensus 120 ~~~~~~vG~rv~v~~~--~~~G~vryvG~~~~~-~~g~wvGVelde~~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v 192 (208)
.+..|+||+||+|.++ .+||||||||++++. ..|+|||||||||.||||||++|+||| .|+++||+||++..+
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~ 82 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI 82 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence 3557999999999744 489999999999873 369999999999999999999999999 999999999987765
No 24
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.75 E-value=1.3e-18 Score=127.28 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=58.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
+||++||+||+.++||||++|+|++++.++.....+.+|+++|++|++++|++|||+|++|+
T Consensus 25 ~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P~ 86 (86)
T 4b6w_A 25 QTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQPS 86 (86)
T ss_dssp SBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCCC
Confidence 69999999999999999999999999888888888889999999999999999999999995
No 25
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=5.8e-17 Score=121.05 Aligned_cols=61 Identities=75% Similarity=1.347 Sum_probs=56.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
+||++||+||+.+|||||++|+|+++..+|+.++.|.+|+++|++|++++|++|||+|++|
T Consensus 37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p 97 (97)
T 2kj6_A 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP 97 (97)
T ss_dssp CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence 6999999999999999999999999876666666677899999999999999999999987
No 26
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=9.1e-16 Score=113.60 Aligned_cols=63 Identities=32% Similarity=0.333 Sum_probs=56.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcC-CCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~-~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
+||++||.||+.+||+||+.|+|.+++. .+.....|++|.++|++|++++|++|||+|++|+|
T Consensus 33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s 96 (97)
T 1wjn_A 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS 96 (97)
T ss_dssp SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence 6999999999999999999999999864 23345668999999999999999999999999976
No 27
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=9.7e-16 Score=113.14 Aligned_cols=66 Identities=32% Similarity=0.437 Sum_probs=59.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTS 66 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~ 66 (208)
+||++||+||+.++||||++|+|.+...+|+.+..|.+|+++|++|++++|++|||+|++|+++++
T Consensus 29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~~~ 94 (95)
T 1v6e_A 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGPSS 94 (95)
T ss_dssp SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSSSC
T ss_pred CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccccC
Confidence 589999999999999999999999986556766667789999999999999999999999988764
No 28
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.4e-14 Score=107.55 Aligned_cols=57 Identities=32% Similarity=0.603 Sum_probs=51.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
+||++||+||+.+|||||++|+|.+.+ +|+.+..|.+|+++|++|++++|++|||+|
T Consensus 38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 38 LTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp CBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 599999999999999999999999975 355555677899999999999999999999
No 29
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=2.3e-10 Score=83.19 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=49.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
+||.+||++|+..+|+||+.|+|.+ .|+. |.|++++|++|++++|++|||++..+.
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~---L~D~~~~L~~~~i~~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGIQDGCRVMLIGKKNS 87 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE---CCee---cCCCcccHHHCCCCCCCEEEEEecCCC
Confidence 4899999999999999999999987 4665 556688999999999999999997653
No 30
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.93 E-value=7.7e-10 Score=82.41 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=48.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+..+|
T Consensus 48 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~gI~~g~tI~lv~~~P 101 (101)
T 3m63_B 48 STVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLVKSQP 101 (101)
T ss_dssp SBHHHHHHHHHHHHSCCSTTCCEEE---TTEE---C-CTTSBTTTTTCCTTEEEEECCCC-
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEeCCC
Confidence 4899999999999999999999998 4654 3 678999999999999999998876
No 31
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.91 E-value=9.3e-10 Score=76.49 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||++..
T Consensus 24 ~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 24 STVLQFKEAINKANGIPVANQRLIY---SGKI---L-KDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEE---CCeE---c-CCCCCHHHcCCCCCCEEEEEEcC
Confidence 4899999999999999999999987 4654 4 56799999999999999999853
No 32
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=1.7e-09 Score=79.18 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=51.5
Q ss_pred CCHHHHHHhcccc---cccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccC
Q 028484 1 MSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTS 66 (208)
Q Consensus 1 ~TI~~LK~KLe~i---tGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~ 66 (208)
.||.+||++|+.. +|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+...|.+.+.
T Consensus 21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~~i~l~~~~~~~~~~ 82 (95)
T 1uel_A 21 ETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI---L-NDDTALKEYKIDEKNFVVVMVTKPKAVST 82 (95)
T ss_dssp SBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCSSSEEEEEESSCCCCCC
T ss_pred CHHHHHHHHHHhhcccCCCChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEEeCCCCCCC
Confidence 4899999999999 999999999987 4654 4 56799999999999999999998766544
No 33
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.90 E-value=8.7e-10 Score=78.31 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCHHHHHHhcccc---cccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~i---tGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
.||.+||++|+.. +|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+...|.
T Consensus 26 ~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 26 ETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp SBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEE---C-CTTSBGGGGCCCTTSEEEEEEC---
T ss_pred CCHHHHHHHHHhhccccCCCHHHeEEEE---CCEE---C-cCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 4899999999997 999999999987 4654 4 5789999999999999999998764
No 34
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.90 E-value=3.8e-10 Score=84.87 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcC--CCC------eeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDD--TNT------KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~--~g~------~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
+||.+||+||+.++||||++|+|.+... .++ .++.+.+|.++|++|++++|++|||++.....
T Consensus 28 ~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~~~ 98 (107)
T 1wf9_A 28 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGERT 98 (107)
T ss_dssp SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSCCC
T ss_pred CcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCCCc
Confidence 5899999999999999999999998522 000 22223688999999999999999999975433
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=77.16 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=45.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++
T Consensus 25 ~tV~~lK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 25 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred ChHHHHHHHHHhhcCCCHHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 5655 3 67899999999999999997
No 36
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.88 E-value=8.6e-10 Score=81.99 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=49.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
+||.+||++|+..+||||+.|+|.+ .|+. |.|+.++|++|++++|++|||+......
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~---~gk~---L~D~~~tL~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 32 FELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp CBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEEEEECBCCCCC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEE---CCEE---CCCCcccHHHCCCCCCCEEEEEECCCCC
Confidence 5899999999999999999999997 4654 5566689999999999999999976433
No 37
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=2e-09 Score=75.31 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=45.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++||++=
T Consensus 25 ~tv~~lK~~i~~~~gip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 25 TKVEELRRKIQELFHVEPGLQRLFY---RGKQ---M-EDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999997 4654 3 578999999999999999973
No 38
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.82 E-value=3.7e-09 Score=76.11 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=46.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|+|+.+
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 32 CTVKDLKSQLQPITNVLPRGQKLIF---KGKV---L-VETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCEEEE---TTEE---C-CTTCBTTTTTCCTTEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEE---CCeE---C-CCcCCHHHCCCCCCCEEEEEEe
Confidence 4899999999999999999999986 4654 3 6789999999999999999864
No 39
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.82 E-value=2e-09 Score=79.58 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||++|+|.+ .|+. | .|..+|++|+|++|++||+-
T Consensus 42 DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~---L-kD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 42 DSVGDFKKVLSLQIGTQPNKIVLQK---GGSV---L-KDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEEe---CCEE---c-cCcCCHHHcCCCCCCEEEEE
Confidence 4899999999999999999999988 5765 3 68899999999999999974
No 40
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.82 E-value=9.7e-10 Score=79.17 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=45.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||++||++|+..+|+||+.|+|.+ .|+. +.+|+++|++|++++|++|||+
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---lL~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLIV---DGIV---ILREDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---CCCSSSBHHHHTCCTTSCEEEE
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEE---CCEE---ecCCcCCHHHcCCCCCCEEEEE
Confidence 4899999999999999999999998 4654 1368899999999999999986
No 41
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.82 E-value=3.7e-09 Score=81.34 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=53.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCC-------CcEEEEecCCCCCccCCCcccCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ-------GYRLHVIDLDPSSVTSGGWLEDT 73 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~-------g~~IhV~D~~p~s~~~~~~l~D~ 73 (208)
.||.+||+||+.++||||++|+|++ +|+. .+|.++|++|+|++ +++||++=.. .|.|+++
T Consensus 22 dTV~~lK~kI~~~~giPp~qQrLI~---~Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~------~~~fE~l 88 (118)
T 4ajy_B 22 STVFELKRIVEGILKRPPDEQRLYK---DDQL----LDDGKTLGECGFTSQTARPQAPATVGLAFRA------DDTFEAL 88 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEECC------SSCCCCC
T ss_pred ChHHHHHHHHHHHHCCCHHHeEEEe---CCeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEEec------CCCccce
Confidence 4899999999999999999999996 5654 38899999999999 9999998432 3446665
Q ss_pred CcceeeecC
Q 028484 74 SLVEKYTIS 82 (208)
Q Consensus 74 s~vek~~ls 82 (208)
.- +.|..+
T Consensus 89 ~i-~p~s~p 96 (118)
T 4ajy_B 89 CI-EPFSSP 96 (118)
T ss_dssp CB-CCCCCC
T ss_pred EE-ecCCCC
Confidence 42 244443
No 42
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.79 E-value=4.8e-09 Score=77.91 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+...|
T Consensus 45 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 45 SSVQQFKEEISKRFKSHTDQLVLIF---AGKI---L-KDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEEEEEcCC
Confidence 5899999999999999999999987 4655 3 577999999999999999998754
No 43
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.79 E-value=4.6e-09 Score=75.86 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=45.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++=
T Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 21 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChhHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999998 4665 3 678999999999999999984
No 44
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.78 E-value=2.4e-09 Score=78.60 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCC-CcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS-RPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~-~~L~~y~i~~g~~IhV~D~~ 60 (208)
+||.+||++|+..+|+||+.|+|.+ .|+. | +|+ ++|++|++++|++|||+..-
T Consensus 35 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 35 ETVSSLKDKIHIVENTPIKRMQLYY---SGIE---L-ADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CBHHHHHHHHHHHSSSCTTTEEEEE---TTEE---E-CCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE---CCEE---C-CCCcccHHHCCCCCCCEEEEEEeC
Confidence 5899999999999999999999987 4665 4 455 99999999999999999754
No 45
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.78 E-value=3.6e-09 Score=76.59 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=45.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 38 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred CCHHHHHHHHHhhhCCChhhEEEEE---CCeE---C-CCcCcHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 4655 3 57799999999999999997
No 46
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.78 E-value=4.1e-09 Score=72.63 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=45.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 21 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999997 4654 3 57899999999999999997
No 47
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.76 E-value=3.4e-09 Score=79.23 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
.||.+||.+|+..+|+|++.|+|.+ .|+. | +|+++|++|++++|++|||+...|.
T Consensus 44 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 44 DTVFHMKRRLHAAEGVEPGSQRWFF---SGRP---L-TDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp SHHHHHHHHHHHTTCCCSTTCEEEE---TTEE---C-CTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred CcHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 4899999999999999999999998 4654 3 6789999999999999999998764
No 48
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.76 E-value=6e-09 Score=73.67 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=45.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|+++++++|||+=
T Consensus 24 ~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 24 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TBEE---C-CTTCBTTTTTCCTTCEEEEEE
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEE---CCeE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence 4899999999999999999999998 4654 3 577899999999999999984
No 49
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.76 E-value=1.2e-09 Score=80.35 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|+..|||||+.|+|.+ .|+. | +|. +|++|++++|++|||+++.
T Consensus 37 ~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~---L-dd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 37 STGSELKQKIHSITGLPPAMQKVMY---KGLV---P-EDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp SBHHHHHHHHHHHHCSCSTTCCCBS---SSBC---C-SSS-BHHHHCCCTTEEEEECCSS
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEE---CCee---C-CcC-cHHHCCCCCCCEEEEEecc
Confidence 4899999999999999999999997 4654 4 444 9999999999999999975
No 50
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-09 Score=73.76 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||++||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+
T Consensus 28 ~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 28 ELVSTLKQLVSEKLNVPVRQQRLLF---KGKA---L-ADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---C-CTTSBGGGGTCCSSBCCEEE
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999987 4665 3 57789999999999999987
No 51
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=7.9e-09 Score=77.36 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=48.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++-..|.+
T Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~lv~~~~~~ 77 (106)
T 3m62_B 22 NTILETKTKLAQSISCEESQIKLIY---SGKV---L-QDSKTVSECGLKDGDQVVFMVSQKKS 77 (106)
T ss_dssp SBHHHHHHHHHHTTTSCGGGCEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEECCC---
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEE---CCEE---C-CCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence 4899999999999999999999998 4765 3 67899999999999999999877643
No 52
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.74 E-value=7.2e-09 Score=77.99 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||+.|+|.+ .|+. | +|+++|++|++++|++|||+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 52 ENVGSLKEKIAGEIQIPANKQKLSG---KAGF---L-KDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp SBHHHHHHHHHHHTTCCTTTSEEEC---SSSB---C-CTTSBTTTTTCSSSCEEEEE
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 4654 3 67899999999999999998
No 53
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.74 E-value=5.2e-09 Score=74.98 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++ +|++||++
T Consensus 38 ~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 38 MNVKEFKEHIAASVSIPSEKQRLIY---QGRV---L-QDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTC-TTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCCCcHHHcCC-CCcEEEEE
Confidence 4899999999999999999999998 5665 3 57899999999 89999986
No 54
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.74 E-value=4.4e-09 Score=74.94 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=45.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+
T Consensus 33 ~tV~~lK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 33 DKVERIKERVEEKEGIPPQQQRLIY---SGKQ---M-NDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999998 4655 3 57899999999999999997
No 55
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.74 E-value=6.8e-09 Score=74.68 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCc
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSV 64 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~ 64 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++ +|++||++-..|.+.
T Consensus 26 ~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~---L-~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 26 MNVKEFKEHIAASVSIPSEKQRLIY---QGRV---L-QDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE---CCeE---C-CCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 5899999999999999999999998 5765 3 67899999999 899999999876543
No 56
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.74 E-value=6.8e-09 Score=71.52 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=44.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||++||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++.+|++|||+
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999998 4654 4 56899999999999999997
No 57
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.73 E-value=7e-09 Score=77.65 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=49.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
.||.+||++|+..+|+||++|+|++ .|+. | +|+++|.+|+|++|++|||+=+...+
T Consensus 40 ~TV~~lK~kI~~k~gip~~qQrLI~---~GKi---L-~D~~TL~~y~I~~gsti~vl~lrg~~ 95 (100)
T 1wju_A 40 ITGRELRSKIAETFGLQENYIKIVI---NKKQ---L-QLGKTLEEQGVAHNVKAMVLELKQSS 95 (100)
T ss_dssp SBHHHHHHHHHHHTTCCSTTCEEEE---TTEE---C-CTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEe---CCeE---C-CCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 4899999999999999999999997 5876 3 68899999999999999998776543
No 58
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=4.6e-09 Score=74.92 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=45.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+=
T Consensus 28 ~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~---L-~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 28 SFILGLKQQIEDQQGLPKKQQQLEF---QGQV---L-QDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SBHHHHHHHHHHHTCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTEEEEEEE
T ss_pred ChHHHHHHHHHHHhCCChHHEEEEE---CCEE---c-cCCCCHHHCCCCCCCEEEEEE
Confidence 4899999999999999999999997 4654 3 578999999999999999984
No 59
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=5.2e-09 Score=75.05 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++.+|++||++=
T Consensus 30 ~tV~~lK~~i~~~~gip~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 30 ATIEELRERVWALFDVRPECQRLFY---RGKQ---L-ENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp CBHHHHHHHHHHHSCCCTTTEEEEE---TTEE---C-CSSSBHHHHTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEE---CCeE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence 4899999999999999999999998 4654 3 578999999999999999984
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=7.6e-09 Score=76.12 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++
T Consensus 43 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 43 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTCBSGGGTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 4655 3 67899999999999999997
No 61
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.71 E-value=9e-09 Score=72.62 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=45.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|+++++++|||+=
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999997 4654 3 577999999999999999984
No 62
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.70 E-value=3.2e-09 Score=76.60 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=46.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+...
T Consensus 25 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 25 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp SBHHHHHHHHHHHTCSCTTTEEEES---SSSC---C-CTTSBHHHHHCSTTCEEEEEEC-
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEEEc
Confidence 4899999999999999999999997 4665 3 57899999999999999999764
No 63
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.70 E-value=9.7e-09 Score=74.12 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||++||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++||++=
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 30 DTIENLKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBSGGGTCCTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999998 4654 3 568999999999999999973
No 64
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.69 E-value=1.1e-08 Score=74.27 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=45.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+=
T Consensus 22 ~TV~~LK~~i~~~~gip~~~qrL~~---~G~~---L-~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 22 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHhhhCCChhHEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 5899999999999999999999998 4655 3 577899999999999999984
No 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.68 E-value=1.9e-08 Score=77.73 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||.+|+..+|||++.|+|.+ .|+. | +|+++|++|++++|++|||+...+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 52 SSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp CCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEEEEEC--
T ss_pred CcHHHHHHHHHHHHCcCcceEEEEE---CCEE---c-CCCCCHHHcCCCCCCEEEEEeccC
Confidence 5899999999999999999999998 4665 3 577999999999999999998753
No 66
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.67 E-value=6.1e-09 Score=76.11 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=45.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 38 ETVAQIKAHVASLEGIAPEDQVVLL---AGAP---L-EDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp CBHHHHHHHHHHHHTCCGGGCEEEE---TTEE---C-CTTSBHHHHTCCSSCEEEEE
T ss_pred CcHHHHHHHHHHHhCcChhHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 4654 4 67899999999999999997
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.67 E-value=2.3e-08 Score=77.62 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=63.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCcccCC-Ccceee
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDT-SLVEKY 79 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~D~-s~vek~ 79 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+...+..+.-. +... .+.-.+
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~--Vk~~~g~~~~~ 91 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLRGGMQIF--VKTLTGKTITL 91 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECCTTCEEEE--EEESSSCEEEE
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEE---CCeE---C-cCcccHHHhccCCCCeeEEEeeccccccee--eeecCCCEEEE
Confidence 5899999999999999999999998 3654 4 578999999999999999999876432100 1111 111134
Q ss_pred ecCHHHHhcchhhHHHHHHHh
Q 028484 80 TISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 80 ~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
+++ ..+||...|++.
T Consensus 92 ~v~------~~~tv~~lK~~i 106 (152)
T 3b08_A 92 EVE------PSDTIENVKAKI 106 (152)
T ss_dssp EEC------TTCBHHHHHHHH
T ss_pred EeC------CCCcHHHHHHHH
Confidence 444 379999999875
No 68
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.12 E-value=2.5e-09 Score=74.37 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=44.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||++||++|+..+|+||+.|+|.+. |+. | +|+.+|++|++++|++||++
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 21 TSILQLKEVVAKQQGVPADQLRVIFA---GKE---L-PNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 48999999999999999999999873 654 3 56799999999999999986
No 69
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.66 E-value=1.8e-08 Score=76.03 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=45.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||.+|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++||++
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 56 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTTTTTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhCCChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEE
Confidence 5899999999999999999999998 4654 3 57789999999999999997
No 70
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.1e-08 Score=76.08 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=47.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+...+
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 30 DTIDNVKSKIQDKEGIPPDQQRLIW---AGKQ---L-EDGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTTTTTCCSSCEEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEE---CCEE---C-CCCCcHHHCCCCCCCEEEEEEEcC
Confidence 5899999999999999999999987 4654 4 578999999999999999998653
No 71
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.66 E-value=9.3e-09 Score=79.14 Aligned_cols=61 Identities=13% Similarity=-0.000 Sum_probs=50.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCC-------CCcEEEEecCCCCCccCCCcccCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-------QGYRLHVIDLDPSSVTSGGWLEDT 73 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~-------~g~~IhV~D~~p~s~~~~~~l~D~ 73 (208)
.||.+||+||+.++||||++|+|.+ +|+. | +|.++|++|+|+ .+++||++=. ..|.|+++
T Consensus 22 dTV~~lK~kI~~~egIP~~qQrLi~---~Gk~---L-eD~~TLsdy~I~~~~a~~q~~stL~L~lr------~~g~fe~l 88 (118)
T 2fnj_B 22 STVFELKRIVEGILKRPPEEQRLYK---DDQL---L-DDGKTLGECGFTSQTARPQAPATVGLAFR------ADDTFEAL 88 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTTSBTTBCEEEEEEEB------SSSCBCCC
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEEE---CCeE---C-CCCCCHHHcCcccccccCCCCCEEEEEec------CCCceeee
Confidence 4899999999999999999999996 5764 3 789999999999 6999999832 33556554
Q ss_pred C
Q 028484 74 S 74 (208)
Q Consensus 74 s 74 (208)
.
T Consensus 89 ~ 89 (118)
T 2fnj_B 89 R 89 (118)
T ss_dssp C
T ss_pred E
Confidence 4
No 72
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.65 E-value=9.8e-09 Score=74.90 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=47.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|.+|++++|++|||+...+
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 37 SNVRRFKKQISKYLHCNADRLVLIF---TGKI---L-RDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp CCHHHHHHHHHHHTCSCTTTBCCEE---TTEE---C-CTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCcCCHHHCCCCCCCEEEEEEeCC
Confidence 5899999999999999999999998 4654 4 577999999999999999997643
No 73
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.65 E-value=5.2e-08 Score=70.93 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCcc
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVT 65 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~ 65 (208)
.||.+||++|+..+ |+.|+|.+ .|+. |.|++++|++|++++|++|||+...|.+..
T Consensus 28 ~TV~~LK~~i~~~~---~~~qrLi~---~Gk~---L~D~~~tL~~y~i~~g~~i~l~~~~~~~~~ 83 (95)
T 1wia_A 28 DTVGTLKSKYFPGQ---ESQMKLIY---QGRL---LQDPARTLSSLNITNNCVIHCHRSPPGAAV 83 (95)
T ss_dssp SBHHHHHHHHSSST---TTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEEEEECCCCCCCC
T ss_pred CcHHHHHHHHHhhC---cCcEEEEE---CCEE---ccCCcCCHHHcCCCCCCEEEEEECCCCCCC
Confidence 48999999999999 99999987 4665 544449999999999999999998876543
No 74
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.64 E-value=1.7e-08 Score=76.19 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=45.3
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~~ 60 (208)
+||++||++|+...|+||+.|||.+ .++ +.+|+++|++|++ ++|++||+.=.+
T Consensus 47 ~TV~~LK~~I~~k~Gipp~~QRli~---ggk----ll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 47 MTVASLKDMVFLDYGFPPVLQQWVI---GQR----LARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTE----EECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred ChHHHHHHHHHHHhCCCHHHEEEec---cCe----EccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 5899999999999999999999775 344 3478999999999 599999987543
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=1.5e-08 Score=75.82 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=48.5
Q ss_pred CCHHHHHHhccccc--ccCCCC-eEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRKC--GTSVNS-MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~it--Gi~p~~-m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
.||.+||++|+..+ |+||+. |+|.+ .|+. | +|+++|.+|++++|++||++...+.
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~---L-~D~~tL~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KDDQTLDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CTTCBHHHHTCCTTCEEEEEESSCC
T ss_pred CCHHHHHHHHHHHhccCCChhhcEEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEeCCCC
Confidence 48999999999999 999999 99987 4765 4 5779999999999999999987653
No 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.63 E-value=1.2e-08 Score=77.28 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=45.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+||||+.|+|.+ .|+. | +|+.+|++|++++|++||++=
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 56 DQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp SBTHHHHHHHHHHSSCCTTTEEEEE---TTEE---E-CTTSBHHHHTCCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCChHHEEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence 4899999999999999999999998 4654 4 578999999999999999974
No 77
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.63 E-value=1.4e-08 Score=75.66 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|+..+|+|++.|+|.+ .|+. | +|+++|.+|++++|++|||+..-
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 37 CTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CCHHHHHHHHHHHHTCCTTTEEEEE---TTEE---C-CTTSCHHHHTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCCCCEEEEEEcC
Confidence 5899999999999999999999987 4654 3 57899999999999999999754
No 78
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.62 E-value=5.8e-08 Score=76.65 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC-CCCccCCCcccC-CCccee
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD-PSSVTSGGWLED-TSLVEK 78 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~-p~s~~~~~~l~D-~s~vek 78 (208)
.||.+||++|+..+|+||+.|+|.++. .|+. | +|+.+|++|++++|++||++-.. |..+.-. ... ..+.-.
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~--vk~~~g~~~~ 95 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLVVDKSDEPLSIL--VRNNKGRSST 95 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEEEECCCCCCEEEE--EECTTSCEEE
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEEEccCCCCcEEEE--EECCCCCEEE
Confidence 489999999999999999999999552 2554 3 78999999999999999999874 3322100 111 122224
Q ss_pred eecCHHHHhcchhhHHHHHHHhh
Q 028484 79 YTISEEEYSKRDGTFRKFKEKVL 101 (208)
Q Consensus 79 ~~ls~e~Y~~r~dtv~~~k~~~~ 101 (208)
++++. .+||...|++..
T Consensus 96 ~~v~~------~~tV~~lK~~i~ 112 (159)
T 3rt3_B 96 YEVRL------TQTVAHLKQQVS 112 (159)
T ss_dssp EEECT------TSBHHHHHHHHH
T ss_pred EEeCC------CCCHHHHHHHHH
Confidence 56654 799999998753
No 79
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.62 E-value=1.1e-08 Score=75.79 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+...
T Consensus 42 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 42 CTIQQLKEEISQRFKAHPDQLVLIF---AGKI---L-KDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBHHHHTCCTTCEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHCCCCCCCEEEEEEcC
Confidence 4899999999999999999999987 4654 3 57899999999999999999754
No 80
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.61 E-value=3e-08 Score=72.58 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=47.7
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++.+|++|||+...+
T Consensus 21 ~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 21 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CBHHHHHHHHHHHTCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEEeCC
Confidence 4899999999999999999999997 4655 3 568999999999999999998654
No 81
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.61 E-value=4e-08 Score=73.91 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=45.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++|||+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 56 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CSSCBTTTTTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHCcCcccEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999987 4654 4 56899999999999999997
No 82
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.61 E-value=4e-08 Score=73.05 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCHHHHHHhc-ccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecCCC
Q 028484 1 MSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KL-e~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~~p 61 (208)
.||.+||++| +..+|+||++|||.+ .|+. | +|+.+|++|++ ++|.+||++=+.|
T Consensus 42 ~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 42 DTILQIKQHLISEEKASHISEIKLLL---KGKV---L-HDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp CBHHHHHHHHHHTTSCSCGGGEEEEE---TTEE---E-CTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred ChHHHHHHHHHHHhcCCChhhEEEEE---CCEE---C-cCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 4899999999 999999999999998 5765 3 67899999999 9999999986655
No 83
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.60 E-value=4.7e-08 Score=78.43 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=63.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCCccCCCccc-CCCcceee
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLE-DTSLVEKY 79 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s~~~~~~l~-D~s~vek~ 79 (208)
.||.+||+||+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++-.-+..+.-. +. ...+.-.+
T Consensus 41 ~tV~~lK~~I~~~~gip~~~QrL~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~--Vk~~~g~~~~l 111 (172)
T 3u30_A 41 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLRLRGGMQIF--VKTLTGKTITL 111 (172)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEEECCCCCEEEE--EEESSCCEEEE
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEE---CCcc---c-cccCCHhHcCCcccceeeeeecccccccce--eecccCcceeE
Confidence 5899999999999999999999997 4654 3 678999999999999999997654332110 11 11222244
Q ss_pred ecCHHHHhcchhhHHHHHHHhh
Q 028484 80 TISEEEYSKRDGTFRKFKEKVL 101 (208)
Q Consensus 80 ~ls~e~Y~~r~dtv~~~k~~~~ 101 (208)
+++ ..+||...|++..
T Consensus 112 ~v~------~~~tV~~lK~~I~ 127 (172)
T 3u30_A 112 EVE------PSDTIENVKAKIQ 127 (172)
T ss_dssp EEC------TTCBHHHHHHHHH
T ss_pred Eec------CCCCHHHHHHHHH
Confidence 554 4789999999753
No 84
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.59 E-value=1.3e-08 Score=76.17 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=45.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||+.|+|++ .|+. | +|+.+|++|+|++|++||++
T Consensus 49 dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~---L-~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 49 DTIGDLKKLIAAQTGTRWNKIVLKK---WYTI---F-KDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CSSCBHHHHTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence 4899999999999999999999997 4765 3 67899999999999999985
No 85
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.59 E-value=2.8e-08 Score=73.22 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..|||||+.|+|.+ .|+. |. |+ +|.+|++++|++||++=+..
T Consensus 28 ~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~---L~-D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 28 EPPMVFKAQLFALTGVQPARQKVMV---KGGT---LK-DD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---CC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEE---CCcC---CC-CC-CHHHCCCCCCCEEEEEecch
Confidence 4899999999999999999999997 4665 43 45 99999999999999986543
No 86
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.5e-08 Score=73.70 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=46.3
Q ss_pred CCHHHHHHhc-ccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCC-CCCcEEEEecC
Q 028484 1 MSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KL-e~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i-~~g~~IhV~D~ 59 (208)
.||.+||+|| +..+|+||++|||.+ .|+. | +|+.+|++|++ ++|++|||.=+
T Consensus 24 ~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 24 DTILQIKQHLISEEKASHISEIKLLL---KGKV---L-HDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CBHHHHHHHHHHTTSCSSSTTEEEEE---TTEE---C-CTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CcHHHHHHHHHHHhcCCChHHEEEEE---CCEE---C-cCcCCHHHcCCCCCCCEEEEEcC
Confidence 4899999999 999999999999998 5766 3 68899999999 79999999854
No 87
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.56 E-value=2.4e-08 Score=72.45 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEE---EEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~---l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
.||.+||++|+..|||||+.|+|. + .|+. | +|+.+|.+|++++|.+||++=+
T Consensus 28 ~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~---L-~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 28 DTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKP---A-ENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEE---C-CTTSBHHHHTCCTTEEEEEECC
T ss_pred CCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcC---c-CCCCCHHHcCCCCCCEEEEEec
Confidence 489999999999999999999998 6 4654 3 5678999999999999999865
No 88
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=3.3e-08 Score=71.87 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=46.6
Q ss_pred CCHHHHHHhccc-ccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWR-KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~-itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
.||.+||++|+. ..|+||+.|+|.+. ..|+. | +|+.+|.+|++++|++|||-|+
T Consensus 34 ~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~---L-~D~~tL~~y~i~~~stl~~KDL 88 (88)
T 2dzj_A 34 ATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS---L-KDEDVLQKLPVGTTATLYFRDL 88 (88)
T ss_dssp CBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC---C-CTTCBTTTSSCCSEEEEEECCC
T ss_pred CcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC---c-CCCCCHHHcCCCCCCEEEEEeC
Confidence 489999999999 69999999999872 34665 3 6789999999999999999984
No 89
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.56 E-value=2.7e-08 Score=72.29 Aligned_cols=52 Identities=19% Similarity=0.077 Sum_probs=46.1
Q ss_pred CCHHHHHHhccccc--ccCCCCeEEEEEcCCCCeeeecCCCCCcCCCC--CCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWRKC--GTSVNSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~it--Gi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y--~i~~g~~IhV~D~ 59 (208)
.||.+||++|+..+ |+||+.|+|.+ .|+. | +|+.+|++| +++++++||++-.
T Consensus 30 ~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~---L-~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 30 WSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL---L-LDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp SCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE---C-CSSSCHHHHSCSSSCSEEEEEECC
T ss_pred CcHHHHHHHHHHHhcCCCChHHeEEEE---CCEE---C-cCcCCHHHHhcCCCCCCEEEEEeC
Confidence 48999999999999 99999999997 4765 4 567899999 9999999999854
No 90
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.55 E-value=2.2e-08 Score=70.17 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++++..+|+||+.|+|.+ +|+. | +|+.+|++|++++|++||++=
T Consensus 24 ~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~---L-~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTEEEEEEE
T ss_pred ChHHHHHHHHHHHHCCCcccEEEEE---CCEE---e-CCCCCHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999988 5765 3 577999999999999999973
No 91
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-08 Score=75.43 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||++||++|+..|||||+.|+|.++ +.|+ + +|+++|++|++++|++||++
T Consensus 29 ~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 29 CTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEEEC
T ss_pred CcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999643 2344 2 67899999999999999985
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.52 E-value=7.3e-08 Score=69.24 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 61 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p 61 (208)
.||.+||++|+..+||||+.|+|.+- ..++.+ .+.+++++|.+|++.+|.+|||.+..+
T Consensus 21 ~Tv~~Lk~~I~~~~gi~~~~qrL~~~-~p~k~l-~l~~~~~tL~~~gl~~g~~l~v~~~~~ 79 (86)
T 2kzr_A 21 TRLRELQGQIAAITGIAPGSQRILVG-YPPECL-DLSDRDITLGDLPIQSGDMLIVEEDQT 79 (86)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCCCEES-SCCCCC-CCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred CCHHHHHHHHHHHhCCCccceEEEeC-CCCccc-ccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence 48999999999999999999999862 223432 233578999999999999999999764
No 93
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.51 E-value=6.6e-08 Score=78.20 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=46.7
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++||++=.
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEE---CCcc---c-cCcCcHHHcCCCCCCEEEEEEE
Confidence 4899999999999999999999998 5765 3 6789999999999999999854
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.50 E-value=6e-08 Score=76.54 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||++||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++=
T Consensus 102 ~tV~~lK~~i~~~~gip~~~q~L~~---~G~~---L-~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 102 QTVAHLKQQVSGLEGVQDDLFWLTF---EGKP---L-EDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTSBGGGGTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEE---CCee---c-CCCCCHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999998 5755 3 678999999999999999983
No 95
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.49 E-value=1.5e-08 Score=78.27 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++|||+=
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp ----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCcChHHEEEEE---CCEE---C-CCCCchhhhccCCCCEEEEEE
Confidence 4899999999999999999999998 4665 3 678999999999999999984
No 96
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.47 E-value=4.5e-08 Score=71.94 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||++|+|.+ +|+. | .|+.+|++|++++|++|||+
T Consensus 42 ~tv~~lK~~i~~~~gip~~~qrLif---~Gk~---L-~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 42 THLKKLKESYCQRQGVPMNSLRFLF---EGQR---I-ADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEE---TTEE---C-CTTCCHHHHTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEE---CCeE---c-CCCCCHHHCCCCCCCEEEEE
Confidence 4899999999999999999999998 5776 3 57899999999999999997
No 97
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.47 E-value=5.4e-08 Score=72.42 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=43.4
Q ss_pred CCHHHHHHhccc-ccccCC-CCeEEEEEcCCCCeeeecCCCCCcCCCC--CCCCCcEEEEe
Q 028484 1 MSVESVKDKLWR-KCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~-itGi~p-~~m~L~l~~~~g~~~~~l~dd~~~L~~y--~i~~g~~IhV~ 57 (208)
+||.+||+||+. .+|+|| ++|||++ .|+. | +|+++|++| ++++|++||++
T Consensus 46 ~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~---L-~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 46 WTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRL---L-PDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp SBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEE---E-CTTSBTHHHHTTTCSEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCChhhEEEEE---CCEE---C-CCCCCHHHHhcCCCCCCEEEeC
Confidence 589999999998 578876 9999998 5776 3 588999999 99999999985
No 98
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.43 E-value=3.5e-08 Score=74.35 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=45.5
Q ss_pred CCHHHHHHhcccccccCC---------------CCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSV---------------NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p---------------~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+|| .+|+|.+ .|+. |.+|.++|.+|+|++|++||++=
T Consensus 28 ~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~---L~dD~~tL~dygI~~g~~l~lv~ 94 (105)
T 1v2y_A 28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEK---LTEDRKKLRDYGIRNRDEVSFIK 94 (105)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCE---ECCSSSBHHHHTCCSSEEEEEEE
T ss_pred ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcC---ccCCcCCHHHcCCCCCCEEEEEe
Confidence 589999999999999998 3678986 5765 55789999999999999999985
No 99
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.41 E-value=1e-07 Score=78.73 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=45.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++|++++|++||++=
T Consensus 126 ~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 126 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEE---TTEE---C-CTTCBGGGGTCCTTCEEEECC
T ss_pred CcHHHHHHHHHhccCCCHHHEEEEE---CCEE---C-CCCCCHHHCCCCCCCEEEEEE
Confidence 5899999999999999999999998 4655 3 578999999999999999984
No 100
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.40 E-value=1.7e-07 Score=72.63 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=45.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+||++|+..+|+||+.|+|.+ .|+. | +|+++|++|++++|++||++=
T Consensus 97 ~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~---L-~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 97 DTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEE
T ss_pred CcHHHHHHHHHHHhCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence 4899999999999999999999997 4654 4 578999999999999999973
No 101
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.39 E-value=3.7e-08 Score=78.72 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||+.|+|.+ .|+. | +|+.+|++|+|++|++||++
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 21 DTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ---------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE---CCEE---c-cccCcHHHcCCCCCCEEEEE
Confidence 4899999999999999999999998 4665 3 57899999999999999998
No 102
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.9e-07 Score=69.96 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+||++|...+++|++.|+|.+ +|+. | .|+.+|.+|++++|.+||++=.+
T Consensus 37 ~TV~dLKe~ls~~~~iP~e~qrLIy---~GKi---L-KD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 37 TILKYLKDHFSHLLGIPHSVLQIRY---SGKI---L-KNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SCSHHHHHHHHHHHTCCTTTEEEEE---TTEE---E-CSSCCHHHHSCCSSCEEEEEEEE
T ss_pred CcHHHHHHHHHhhhCCChHHEEEEE---CCeE---c-CCcchHHHcCCCCCCEEEEEEec
Confidence 4899999999999999999999998 5876 3 56889999999999999998643
No 103
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.23 E-value=9.6e-07 Score=68.59 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCHHHHHHhc-----ccccccCC--CCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCC------cEEEEec
Q 028484 1 MSVESVKDKL-----WRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG------YRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KL-----e~itGi~p--~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g------~~IhV~D 58 (208)
.||.+||+|| +..+|||| ++|||++ .|+. | +|+++|++|+++.| .++||+=
T Consensus 38 dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~---L-eD~~TLsdy~I~~~~~~~~v~tmhlVl 101 (126)
T 1se9_A 38 TTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV---L-ENSKTVKDYRSPVSNLAGAVTTMHVII 101 (126)
T ss_dssp CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE---C-CTTSBGGGGSCCTTSCTTCCEEEEEEE
T ss_pred CHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeE---C-cCCCcHHHcCCCcCCccCCcEEEEEEe
Confidence 4899999999 78999997 7999988 6876 3 78999999999998 7889874
No 104
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.14 E-value=1.5e-06 Score=76.98 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 62 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~ 62 (208)
.||++||++|+..|||||+.|+|...--.|+. ..|+.+|++|++++|++||++=+...
T Consensus 25 ~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~----l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 25 DTVEVLRHEIFRKTQVRPERQKLLNLKYKGKT----AADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEETTCBSSSSB----CCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEeecccCCcc----cCccccHHHcCCCCCCEEEEEccchh
Confidence 48999999999999999999999821004654 26789999999999999999976543
No 105
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.14 E-value=3e-06 Score=64.79 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=43.1
Q ss_pred CCHHHHHHhccc------cccc--CCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCC--cEEEEec
Q 028484 1 MSVESVKDKLWR------KCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG--YRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~------itGi--~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g--~~IhV~D 58 (208)
.||.+||++|+. .+|+ ||++|+|++ .|+. | +|+++|++|++..+ .+||++=
T Consensus 37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~---L-eD~~TL~~y~I~~~~~~tlhLvl 97 (116)
T 1wgh_A 37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF---L-HGNVTLGALKLPFGKTTVMHLVA 97 (116)
T ss_dssp CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEE---E-CSSCBTTTTTCCSSCEEEEEEEE
T ss_pred CHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcC---C-CCCCcHHHcCCCCCCceEEEEEc
Confidence 489999999998 7786 699999998 5876 3 68899999999766 6788884
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.99 E-value=3.8e-06 Score=65.01 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=43.2
Q ss_pred CCHHHHHHhccc------ccccC--CCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCc--EEEEec
Q 028484 1 MSVESVKDKLWR------KCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY--RLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~------itGi~--p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~--~IhV~D 58 (208)
.||.+||++|+. .+|+| |++|+|++ .|+.+ +|+++|++|+++.+. +||++=
T Consensus 38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~L----eD~~TL~~y~I~~~~~~tlhlv~ 98 (125)
T 2gow_A 38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFL----HGNVTLGALKLPFGKTTVMHLVA 98 (125)
T ss_dssp SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEE----ESSCBTGGGCCCTTSEEEEEEEE
T ss_pred cHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCC----CCCCcHHHcCCCCCCceEEEEEe
Confidence 489999999999 88994 89999998 58863 688999999999765 678774
No 107
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.81 E-value=1.3e-05 Score=72.33 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=43.3
Q ss_pred CCHHHHHHhccc---ccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEE-EEe
Q 028484 1 MSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL-HVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~---itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~I-hV~ 57 (208)
.||.+||.||+. .+|||+..|+|++ .|+. | +|+++|.+|+|++|++| |++
T Consensus 28 ~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~---L-~D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 28 ETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI---L-SDDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp CBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSE---E-CSSSBTTTTCCCTTSCEEEEE
T ss_pred ChHHHHHHHHHHHhCcCCCChhheEEEE---CCee---c-CCcCCHHHcCCCCCCEEEEEE
Confidence 489999999999 7899999999987 4776 3 57799999999999998 444
No 108
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.60 E-value=6e-05 Score=55.22 Aligned_cols=51 Identities=6% Similarity=0.139 Sum_probs=45.6
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
+++.|+++.....|+||++++|.+ +|+.+ +++.|+.+|++++|.+|||+=.
T Consensus 29 ~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 29 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp CTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEEe
Confidence 688999999999999999999998 68763 5678999999999999999853
No 109
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.53 E-value=1.2e-05 Score=66.28 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.||.+||++|+..+||||++|+|++ .|+. | +|+.+|+ ++++||++
T Consensus 21 dTV~~LK~kI~~keGIP~~qQRLIf---~GK~---L-eD~~TLs-----~~STLhLv 65 (189)
T 2xzm_9 21 TSVLDLKSQISQDMGFEIDMMTLVN---NGFI---A-PNTELVT-----DDVTYYLS 65 (189)
T ss_dssp ---------------------------------------------------------
T ss_pred ChHHHHHHHHHHHhCcChhHEEEEe---cCeE---C-CCCCccc-----CCCEEEEE
Confidence 4899999999999999999999998 4765 3 5678887 88999987
No 110
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.50 E-value=0.00013 Score=50.53 Aligned_cols=49 Identities=6% Similarity=0.149 Sum_probs=43.9
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
+++.|+++.....|+++++++|.+ +|+.+ .++.|..+|++++|.+|||.
T Consensus 23 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 23 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CTHHHHHHHHHHHTCCTTTCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEE
T ss_pred hHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEE
Confidence 678899999999999999999998 68763 56789999999999999985
No 111
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.31 E-value=0.00029 Score=51.26 Aligned_cols=51 Identities=6% Similarity=0.139 Sum_probs=45.3
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
+++.|+++.....|+++++++|.+ +|+.+ .++.|..+|++++|.+|+|+=.
T Consensus 27 ~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 27 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp CTHHHHHHHHHHTTCCSTTEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEEC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEEe
Confidence 678899999999999999999998 68764 5678999999999999999843
No 112
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.23 E-value=0.00017 Score=50.98 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=44.1
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
+++.|+.+.....|+++++++|.+ +|+.+ .++.|..+|++++|.+|||.
T Consensus 30 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 30 PLKVLMSHYEEAMGLSGHKLSFFF---DGTKL----SGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CHHHHHHHHHHHHTCTTCCCEEEE---TTEEC----CSCCCHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEe
Confidence 688999999999999999999998 68763 56789999999999999985
No 113
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=97.23 E-value=0.00036 Score=50.83 Aligned_cols=50 Identities=6% Similarity=0.152 Sum_probs=44.6
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++..|+.+.....|+++++++|.+ +|+.+ .++.|..+|++++|.+|||+=
T Consensus 39 ~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l----~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 39 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp CHHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCccceEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEe
Confidence 688999999999999999999998 68763 567899999999999999973
No 114
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.07 E-value=0.00044 Score=51.61 Aligned_cols=50 Identities=6% Similarity=0.152 Sum_probs=44.8
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++..|+.+.....|+++++++|.| +|+.+ .+..|..+|++++|.+|||+=
T Consensus 46 ~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l----~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 46 PLSKLMKAYCERQGLSMRQIRFRF---DGQPI----NETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CHHHHHHHHHHHHTCCTTTSCEES---SSSBC----CTTSCTTTTTCCTTEEEEECC
T ss_pred hHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEE
Confidence 688999999999999999999998 68773 567899999999999999984
No 115
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=96.88 E-value=0.00099 Score=49.93 Aligned_cols=50 Identities=4% Similarity=0.096 Sum_probs=44.3
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++..|+.+.....|+++++++|.| +|+.+ .++.|..+|++++|.+|+|+=
T Consensus 52 ~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl----~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 52 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CTHHHHHHHHHHHTCCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcccEEEEE---CCeEc----CCCCCHHHcCCCCCCEEEEEe
Confidence 678899999999999999999998 68763 567899999999999999973
No 116
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=48.26 Aligned_cols=41 Identities=7% Similarity=0.204 Sum_probs=32.0
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS 47 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~ 47 (208)
||..||++|+..|||||++|+|.+ .|+.+. + +.+++...|+
T Consensus 35 tv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~-l-~p~~~a~~~p 75 (94)
T 4efo_A 35 TATIFHELVYKQTKIISSNQELIY---EGRRLV-L-EPGRLAQHFP 75 (94)
T ss_dssp BHHHHHHHHHHHHCCCGGGEEEEE---TTEEEC-C-CTTCBGGGSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh---CCCccc-c-CCCCccccCC
Confidence 799999999999999999999998 566543 3 4555555554
No 117
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=96.42 E-value=0.00064 Score=51.29 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=44.8
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++..|+.+.....|+++++++|.| +|+.+ .+..|..+|++++|.+|+|+=
T Consensus 48 ~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L----~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 48 ALKKLIDTYCKKQGISRNSVRFLF---DGTPI----DETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp SHHHHHHHHHHHHTCCSSSCEEES---SSCBC----CSSSHHHHHHCSSEEEEEEEC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEE
Confidence 688999999999999999999998 68774 567899999999999999984
No 118
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=95.89 E-value=0.0019 Score=45.73 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.|+.+|++||...+++++..+.|.+-.+-...+ ....+.+|.++++++|..|+|.
T Consensus 24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l--~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 24 ETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI--TASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS--SSCCCCTTTTTCCCTTCCEEC-
T ss_pred ChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc--cCCCCCCHHHcCCCCCCEEEEe
Confidence 489999999999999999999888743321111 1237889999999999999875
No 119
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=95.30 E-value=0.024 Score=43.00 Aligned_cols=49 Identities=10% Similarity=0.202 Sum_probs=43.3
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
++.-|+.......|+++.++++.| +|..+ +++.|..++++++|.+|+|.
T Consensus 62 ~L~KLm~aY~er~Gl~~~~irFlF---DG~rI----~~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 62 HLKKLKESYCQRQGVPMNSLRFLF---EGQRI----ADNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp CTHHHHHHHHHHHTCCTTSEEEEE---TTEEC----CTTCCTTTTTCCTTCEEEEE
T ss_pred hHHHHHHHHHHHhCCChhhEEEEE---CCeEC----CCCCCHHHcCCCCCCEEEEE
Confidence 577889999999999999999998 68764 56789999999999999987
No 120
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.024 Score=46.88 Aligned_cols=50 Identities=4% Similarity=0.096 Sum_probs=44.8
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++..|+.......|+++.++|+.+ +|+.+ .+..|..++++++|.+|+|.=
T Consensus 50 ~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI----~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 50 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CTHHHHHHHHHHHSSCGGGEEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCChhhEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEEe
Confidence 678899999999999999999998 68774 578899999999999999984
No 121
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.05 Score=45.06 Aligned_cols=51 Identities=4% Similarity=0.077 Sum_probs=44.8
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
++..|+.......|+++.++++.+ +|+.+ +++.|..+++++||.+|+|.=.
T Consensus 78 pL~KLmeAYcERqGL~~~sIRFLF---DGqRI----~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 78 PLRRLMEAFAKRQGKEMDSLTFLY---DGIEI----QADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp CTHHHHHHHHHHTTCCGGGSCEEE---TTEEC----CSSCCTTTTTCCTTEEEEECCC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEE---CCeec----CCCCCHHHcCCCCCCEEEEEEe
Confidence 577899999999999999999998 78774 5688999999999999999853
No 122
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.30 E-value=0.22 Score=41.54 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=48.7
Q ss_pred CCHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+|+.++-.+++|+++ .+||..+....+. ..|.+.+.+|.++++.++..|.|.=-|
T Consensus 162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 4899999999999999997 6999987544333 447778899999999999988777554
No 123
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=92.05 E-value=0.36 Score=37.10 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=38.2
Q ss_pred CCHHHHHHhc----ccccccC----CCCeEEEEEcCCCCeeeecCC-C-----------CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKL----WRKCGTS----VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KL----e~itGi~----p~~m~L~l~~~~g~~~~~l~d-d-----------~~~L~~y~i~~g~~IhV~ 57 (208)
.||.|+|+|| |.-+..+ +.+|.|..+......+. |.| | -.||+.|++.||++|-++
T Consensus 27 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~ 102 (127)
T 3h6n_A 27 DTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS 102 (127)
T ss_dssp SBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred CchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence 4899999998 5544443 56889998754322221 211 1 248999999999999887
No 124
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.78 E-value=0.11 Score=42.84 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=48.8
Q ss_pred CCHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
.||.+|+.++-.+++|++. .+||..+...+ ....|++.+.+|.++++.++..|-|.=.|
T Consensus 150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~-~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSN-TFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp SBHHHHHHHHHHHTTCCTTSCEEEEEEEETT-EEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred chHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4899999999999999997 79999865444 33557777899999999999998877554
No 125
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.65 E-value=0.19 Score=38.21 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=36.7
Q ss_pred CCHHHHHHhc----ccccccC----CCCeEEEEEcCCCCeeeecCCC-----------CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKL----WRKCGTS----VNSMSLELYDDTNTKVAALTDN-----------SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KL----e~itGi~----p~~m~L~l~~~~g~~~~~l~dd-----------~~~L~~y~i~~g~~IhV~ 57 (208)
.||.|+|+|| |.-+..+ +.+|.|.++...+..+.--+.| -.+|+.|++.||++|-++
T Consensus 37 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~ 112 (117)
T 4e74_A 37 DTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALV 112 (117)
T ss_dssp SBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred CchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEEE
Confidence 4899999998 4433333 4578888876533232101111 237889999999998875
No 126
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=91.09 E-value=0.19 Score=39.26 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCHHHHHHhccccc--cc------CCCCeEEEEEcCCCCeeeecCCCC-----------CcCCCCCCCCCcEEEEecC
Q 028484 1 MSVESVKDKLWRKC--GT------SVNSMSLELYDDTNTKVAALTDNS-----------RPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 1 ~TI~~LK~KLe~it--Gi------~p~~m~L~l~~~~g~~~~~l~dd~-----------~~L~~y~i~~g~~IhV~D~ 59 (208)
.||.|+|+||-.-. |+ .+.++.|..+.+.+..+.--+.|. .+|+.|++.||++|-++=.
T Consensus 51 DTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 51 DTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp CBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEEEEC
Confidence 48999999985432 44 345678887654333221112222 2899999999999988743
No 127
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=89.44 E-value=0.068 Score=44.84 Aligned_cols=50 Identities=4% Similarity=0.096 Sum_probs=0.0
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++.-|+.......|+++.++++.+ +|+.+ .++.|..+++++||.+|+|.=
T Consensus 42 pL~KLM~AYcERqGLs~~siRFLF---DGqRI----~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 42 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCccceEEEE---CCEec----CCCCCHHHcCCCCCCEEEEEe
Confidence 466788888999999999999998 58774 467889999999999999984
No 128
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.28 E-value=0.58 Score=35.90 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCHHHHHHhcc-ccc---ccC----CCCeEEEEEcCCCCeee-e------c-CCC---CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLW-RKC---GTS----VNSMSLELYDDTNTKVA-A------L-TDN---SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe-~it---Gi~----p~~m~L~l~~~~g~~~~-~------l-~dd---~~~L~~y~i~~g~~IhV~ 57 (208)
.||.|+|+||= .+. |+| |.+|.|..+...+..+. . . .+. -.||+.|++.||++|-++
T Consensus 49 DTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 49 DTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEEEEe
Confidence 48999999973 233 665 55788888644322211 0 1 111 237889999999998765
No 129
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=86.38 E-value=1 Score=31.93 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=38.8
Q ss_pred CHHHHHHhcccccccCCC-CeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~-~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
||.+|=..--..-|||++ ..+|.+ +|..+ +.+.++.+|.+.||..|-|+
T Consensus 31 ~v~kLi~ayc~~~~I~~~~~IrllF---DGdRL----dp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 31 TVKDLIKRYCTEVKISFHERIRLEF---EGEWL----DPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp BHHHHHHHHHHHHTCCCCTTCEEEE---TTEEC----CTTSBGGGSSCCTTCEEEEE
T ss_pred CHHHHHHHHHHHcCCCcCceEEEEE---cCccc----CccCChhhhCCcCCceeeee
Confidence 455555555566799999 899988 78763 67889999999999998875
No 130
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=85.95 E-value=0.65 Score=34.86 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCHHHHHHhcccc--cccC------CCCeEEEEEcCCCCeeeecCC-C-----------CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRK--CGTS------VNSMSLELYDDTNTKVAALTD-N-----------SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~i--tGi~------p~~m~L~l~~~~g~~~~~l~d-d-----------~~~L~~y~i~~g~~IhV~ 57 (208)
.||.|+|+||=.- -|+| +.+|.|+.+.+....+ |.| | -.||+.|++.||++|-++
T Consensus 34 DTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 34 DTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGRWKRVNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCcceEecchhhcCCCCCCEEEEE
Confidence 4899999998321 1444 4577888864322222 211 1 237889999999998764
No 131
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=79.59 E-value=2 Score=35.10 Aligned_cols=50 Identities=4% Similarity=0.096 Sum_probs=42.4
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++.-|++......|++++++++.+ +|+.+ +++.+-.+...+++..|+|.=
T Consensus 42 ~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i----~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 42 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CTHHHHHHHHHHHTCCGGGCEEEE---TTEEC----CTTCCTTTTTCCTTEEEEEEC
T ss_pred HHHHHHHHHHHhhCCChheEEEEE---CCEec----cCCCChHHhhhcccccchhhc
Confidence 567899999999999999999998 68764 567778888999999998874
No 132
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=79.53 E-value=0.37 Score=43.11 Aligned_cols=51 Identities=4% Similarity=0.076 Sum_probs=0.0
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
++..|++......|++++++++.+ +|+.+ .++.|..+++++||.+|+|.-.
T Consensus 42 ~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI----~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 42 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEE---CCeEC----CCCCChHHcCCCccchhhhhhc
Confidence 567788899999999999999998 58764 4678899999999999999854
No 133
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=77.95 E-value=1 Score=35.15 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.1
Q ss_pred CCCCCcCCCCCCCCCcEEEEe
Q 028484 37 TDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 37 ~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.+|+.+|++|++++|++||++
T Consensus 146 L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 146 LEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCTTSBSGGGTCCTTCEEEEC
T ss_pred CCCCCcHHHhCCCCCCEEEEE
Confidence 468899999999999999987
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=75.64 E-value=1.3 Score=31.47 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCC-CeeeecCCCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTN-TKVAALTDNS 40 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g-~~~~~l~dd~ 40 (208)
++..+|.+||-...+++++.++|++.+.++ ..+ .+.+++
T Consensus 24 ~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~d 63 (83)
T 1oey_A 24 LPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDS 63 (83)
T ss_dssp CCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTT
T ss_pred CCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHH
Confidence 467899999999999999999999988544 444 343333
No 135
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=74.40 E-value=4.5 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCCCcCCCCCCCCCcEEEEe
Q 028484 38 DNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 38 dd~~~L~~y~i~~g~~IhV~ 57 (208)
+|+++|++|++++|++|||+
T Consensus 284 ~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 284 EDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CTTSBTGGGTCCTTCEEEEE
T ss_pred CCCCCHHHcCCCCCCEEEEE
Confidence 67899999999999999997
No 136
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=73.39 E-value=7.4 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcC-CCCeeee---cCCCCCcCCCCCCCCCcEEEEecCC
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAA---LTDNSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~-~g~~~~~---l~dd~~~L~~y~i~~g~~IhV~D~~ 60 (208)
+|+++|-++|....|.+- .+++.+. +...+.. -++-.++|.+.+++.|+.|.|.|-+
T Consensus 20 ~TL~dLV~~l~~~~gy~~---eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ---DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS---SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred cCHHHHHHHHHHhcCCCC---cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 478888777877778763 4455532 2233332 1334789999999999999999964
No 137
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.89 E-value=1 Score=32.37 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCHHHHHHhcccccccCCCC-eEEEEEcCCCCeeeecCCC----CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDN----SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~-m~L~l~~~~g~~~~~l~dd----~~~L~~y~i~~g~~IhV~ 57 (208)
+|..+|++||..++++++.+ .+|...|.+|..+...++. ...|-..+=...-+|||.
T Consensus 26 i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf 87 (89)
T 1vd2_A 26 ISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVF 87 (89)
T ss_dssp CCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEEc
Confidence 47899999999999998654 7888888888765422221 112223344455678875
No 138
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.86 E-value=1.4 Score=33.58 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEc
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYD 27 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~ 27 (208)
+|+.+||..|....|+|++.|||.+..
T Consensus 66 ~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 66 SSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred CcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 589999999999999999999999963
No 139
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=71.27 E-value=3 Score=30.25 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=37.6
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
++.-|...-....|++++..++.+ +|..+ ..+.|..+++++||..|.|.
T Consensus 48 ~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI----~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 48 PLKTLMSHYEEAMGLSGRKLSFFF---DGTKL----SGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CHHHHHHHHHHHTTCSSSCCEEEE---TTEEC----CSCSCHHHHTCCTTEEEEEE
T ss_pred hHHHHHHHHHHHHCCCcccEEEEE---CCEEc----CCCCCHHHcCCCCCCEEEEe
Confidence 345555555667899999999988 68764 45678889999999999874
No 140
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=69.04 E-value=0.99 Score=39.97 Aligned_cols=50 Identities=4% Similarity=0.098 Sum_probs=0.0
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
++.-|+.......|+++.++++.+ +|+.+ .++.|..++++++|.+|+|.=
T Consensus 51 ~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i----~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 51 PLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEeeeee
Confidence 467788999999999999999998 57764 467888999999999998875
No 141
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=68.00 E-value=10 Score=36.19 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=35.9
Q ss_pred CCHHHHHHhcccc--cccC------CCCeEEEEEcCCCCeeeec-CCC-----------CCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRK--CGTS------VNSMSLELYDDTNTKVAAL-TDN-----------SRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~i--tGi~------p~~m~L~l~~~~g~~~~~l-~dd-----------~~~L~~y~i~~g~~IhV~ 57 (208)
.||.|+|+||=.- -|+| +.++.|..+.+....+. | +.| -.||+.|++.||++|-++
T Consensus 284 DTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~i-L~D~D~ts~~~~~wkrLNTL~HY~V~dga~v~L~ 359 (644)
T 3hm6_X 284 DTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLI-LSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALV 359 (644)
T ss_dssp SBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEE-ECSSSTTCCEETTEEECCBTTTTTCCTTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCcee-ecccCccceecCcceeecchhhcCCCCCcEEEEE
Confidence 4899999998511 1333 45677887654222211 2 111 248999999999999876
No 142
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=66.98 E-value=11 Score=35.95 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=36.8
Q ss_pred CCHHHHHHhccccc--ccC------CCCeEEEEEcCCCCeeeecCCC-----------CCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDN-----------SRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~it--Gi~------p~~m~L~l~~~~g~~~~~l~dd-----------~~~L~~y~i~~g~~IhV~D 58 (208)
.||.|+|+||=.-. |+| +.++.|..+.+.+..+.--+.| -.||+.|++.||++|-++=
T Consensus 257 DTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dga~v~L~p 333 (627)
T 3ig3_A 257 DSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDGSLVALVP 333 (627)
T ss_dssp CBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCCceEEEEe
Confidence 48999999984221 332 5677888775432222101111 2389999999999998863
No 143
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=65.45 E-value=3.2 Score=29.19 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=33.9
Q ss_pred CCHHHHHHhcccccccCCCC---eEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEE
Q 028484 1 MSVESVKDKLWRKCGTSVNS---MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 56 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~---m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV 56 (208)
+|+.+|+.-|-...+++... =.|.+. .+. . +..+...|.+|++.+|++|.|
T Consensus 27 ~tvK~Li~~l~ea~~l~~~~~~~~~irv~---NK~-~-~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 27 HPVKKVIDIAWQAQSVSMPPREGHWIRVV---NKD-K-VFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp SBTTHHHHHHHHHSCCCSCCCTTCEEEEG---GGT-E-EEETTSBTGGGTCCTTCEEEE
T ss_pred hhHHHHHHHHHHHhCCCcCCCCCCEEEEe---cCC-E-EEcCCCEEeeCCcCCCCEEEE
Confidence 46778888888777777521 123332 111 1 236788899999999999876
No 144
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=58.12 E-value=4.6 Score=28.10 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=27.7
Q ss_pred CCHHHHHHhcccccccC-----CCCeEEEEEcCCCCeee
Q 028484 1 MSVESVKDKLWRKCGTS-----VNSMSLELYDDTNTKVA 34 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~-----p~~m~L~l~~~~g~~~~ 34 (208)
+|..+|..||....+.. ....+|.++|.+|..+.
T Consensus 12 i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt 50 (77)
T 1pqs_A 12 WNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 50 (77)
T ss_dssp CCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred CCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence 46789999999999976 46789999998887654
No 145
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=44.96 E-value=17 Score=31.51 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCHHHHHHhcccccc----cCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEE
Q 028484 1 MSVESVKDKLWRKCG----TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 56 (208)
Q Consensus 1 ~TI~~LK~KLe~itG----i~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV 56 (208)
+||.+.+.+|-.... .++++=-|.+.+.+++.-..|. ..++|..|++++++.|+.
T Consensus 23 ~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 23 TMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp CBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred CCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence 578888888744442 3566778888776665555564 466999999999987554
No 146
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=43.36 E-value=37 Score=23.04 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
||.+|..=|.. .|.++...+|.--. -.+.+ ...+.+++|.+.++.+...|+|..
T Consensus 29 tl~~v~~fv~~-~~~~~~~f~L~t~f-Prk~l-~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 29 KLQIVFDFVAS-KGFPWDEYKLLSTF-PRRDV-TQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp BHHHHHHHHHH-TTCCTTTEEEECSS-SCCBG-GGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CHHHHHHHHHH-cCCCCCCeEEEeCC-CCCCC-cCCCCCCCHHHCCCCCCCEEEEEe
Confidence 67788887776 56666666655211 12222 123668899999999999998864
No 147
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=40.34 E-value=10 Score=35.20 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=25.0
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEc
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYD 27 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~ 27 (208)
+|+.+||+++....|+|++.|||++..
T Consensus 46 ~~~~~l~~~va~~lg~~~~~~RlW~~~ 72 (530)
T 2ylm_A 46 SSLAEFVQSLSQTMGFPQDQIRLWPMQ 72 (530)
T ss_dssp SBHHHHHHHHHHHHTSCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 589999999999999999999999864
No 148
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=36.95 E-value=39 Score=25.01 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=26.5
Q ss_pred cCCCCcCCEEEEc---CC-----CceeEEEEecccCC---CCCCcEEEEEEeC
Q 028484 121 CSNITVGDRCEVD---PG-----AKRGVVKYVGQAES---IAPGFWVGIQYDE 162 (208)
Q Consensus 121 ~~~~~vG~rv~v~---~~-----~~~G~vryvG~~~~---~~~g~wvGVelde 162 (208)
...+.+|+.|.+. ++ ...|.|.|+-+... ...| +||++.+
T Consensus 39 ~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~~~~~~p~G--~GVqF~~ 89 (117)
T 3cnr_A 39 PKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAG--IGVQFPD 89 (117)
T ss_dssp CSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCE--EEEECCS
T ss_pred CCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCCCCCCCCCc--eEEEEec
Confidence 4568999999884 33 25799999944321 1245 8999864
No 149
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=35.15 E-value=15 Score=26.32 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=21.1
Q ss_pred ccCCCcceeeecCHHHHhcchhhHHHHHHHh
Q 028484 70 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 70 l~D~s~vek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
|.|.+-.+-|.||-++|.+.+ +|||.+
T Consensus 48 LSdedF~~vFgMsr~eF~~LP----~WKq~~ 74 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLA----LWKRNE 74 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSC----HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCh----HHHHHH
Confidence 466666667999999998876 798875
No 150
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=35.02 E-value=44 Score=34.15 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=44.8
Q ss_pred cCCCCcCCEEEEc--CC----CceeEEEEecccCCCCCCcEEEEEEeCCC-CCCCcEECCEEeeecCCCceeeecCCCC
Q 028484 121 CSNITVGDRCEVD--PG----AKRGVVKYVGQAESIAPGFWVGIQYDEPL-GKHNGIVKGVRYFECPPLHGAMVRPDKV 192 (208)
Q Consensus 121 ~~~~~vG~rv~v~--~~----~~~G~vryvG~~~~~~~g~wvGVelde~~-GkndGs~~G~rYF~c~~~~G~Fv~~~~v 192 (208)
...+.+||||... +| +.+|||-=+-.+ .....+.|-||++. |.+ |++| .|.+.+|.=|+++.|
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~~---~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~l 1132 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSI---GKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFL 1132 (1155)
T ss_pred CCcccCCCeEEEecCCCCCccccceEEEEEecC---CCceEEEEEeccCccCCC--cccc----cccccccccccHHHe
Confidence 3459999999874 23 468988766443 34678999999995 433 3333 499999998887764
No 151
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=34.46 E-value=13 Score=27.17 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCHHHHHHhcccccccCCC-----CeEEEEEcCCCCeee
Q 028484 1 MSVESVKDKLWRKCGTSVN-----SMSLELYDDTNTKVA 34 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~-----~m~L~l~~~~g~~~~ 34 (208)
++..+|..||....++++. ..+|.++|.+|..+.
T Consensus 33 i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 33 WNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 71 (98)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred CCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence 4678899999999987633 368999998887654
No 152
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=33.42 E-value=1.9e+02 Score=24.18 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=45.5
Q ss_pred hcCCCCcCCEEEEcC----CCceeEEEEecccCCCCCC-cEEEEEEeCCCCC-CCcEECCEEeeecCCCceeeecCCCCc
Q 028484 120 LCSNITVGDRCEVDP----GAKRGVVKYVGQAESIAPG-FWVGIQYDEPLGK-HNGIVKGVRYFECPPLHGAMVRPDKVK 193 (208)
Q Consensus 120 ~~~~~~vG~rv~v~~----~~~~G~vryvG~~~~~~~g-~wvGVelde~~Gk-ndGs~~G~rYF~c~~~~G~Fv~~~~v~ 193 (208)
....+++|+.|.|.. ....|+|.++++......+ +-+=+.++.+.+. -.|.+- .-.+......++.||.+.|.
T Consensus 218 ~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~-~v~i~~~~~~~l~vP~~Av~ 296 (359)
T 3lnn_A 218 DLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFA-QATFLSQPHEGIVVPMSAIV 296 (359)
T ss_dssp GSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEE-EEEEECCCEEEEEEEGGGCE
T ss_pred HHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEE-EEEEecCCCCceEeCHHHhe
Confidence 356789999999962 2578999999987552233 4455777776543 345442 22334445556666665553
No 153
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=32.49 E-value=15 Score=28.02 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.0
Q ss_pred CCHHHHHHhcccccccCCC
Q 028484 1 MSVESVKDKLWRKCGTSVN 19 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~ 19 (208)
.||.+++.-|-...||++.
T Consensus 32 ~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 32 KTVTDMLMTICARIGITNH 50 (128)
T ss_dssp SSHHHHHHHHHHHHTCCCC
T ss_pred cCHHHHHHHHHHHhCCCCc
Confidence 4788888888888898854
No 154
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=32.18 E-value=82 Score=23.27 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=40.1
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecCCCCC
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSS 63 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~~p~s 63 (208)
||.+|..=|... |.++..-.|.- .--+......+.+++|.+.++.+...|+|....+.|
T Consensus 65 tl~~V~~fV~~~-~~~~~~F~L~t--~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d~~~ 123 (124)
T 1wj4_A 65 KLLALVKHVQSK-GYPNERFELLT--NFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPSS 123 (124)
T ss_dssp CHHHHHHHHHHH-HCCTTTEEEEC--SSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCSTT
T ss_pred CHHHHHHHHHhc-CCCCCCeEEec--CCCCcCCccCCCCCCHHHCCCCCceEEEEEEccCCC
Confidence 788888888776 77665555442 211222222466899999999999999999876644
No 155
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=31.89 E-value=93 Score=21.64 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=6.0
Q ss_pred CCCCCCcEEEEe
Q 028484 46 YSPLQGYRLHVI 57 (208)
Q Consensus 46 y~i~~g~~IhV~ 57 (208)
..+++|.+|-|+
T Consensus 70 ~~L~dGD~Vei~ 81 (87)
T 1tyg_B 70 VELCDRDVIEIV 81 (87)
T ss_dssp SBCCSSSEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 345555555544
No 156
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=29.54 E-value=8.3 Score=27.57 Aligned_cols=38 Identities=26% Similarity=0.755 Sum_probs=28.0
Q ss_pred CCCCcCCEEEEcCCCceeEE--EEecccCCCCCCcEEEEEEeCCC
Q 028484 122 SNITVGDRCEVDPGAKRGVV--KYVGQAESIAPGFWVGIQYDEPL 164 (208)
Q Consensus 122 ~~~~vG~rv~v~~~~~~G~v--ryvG~~~~~~~g~wvGVelde~~ 164 (208)
+...+|..|.|.+..+-|+| ||.| -+|+.+|+-+|+|-
T Consensus 36 apvrig~~v~iv~~s~~~si~~rflg-----~sgivv~lvfddp~ 75 (106)
T 2kss_A 36 APVRIGAKVKVVPHSEDGTISQRFLG-----QTGIVVGLVFDDPA 75 (106)
T ss_dssp CSSCTTCEEECCSSCSSSCCCTTTTT-----CEEEEEECCCCCCT
T ss_pred CceEecceEEEeccccCCccChhhcC-----ccceEEEEEeCCch
Confidence 46789999999755666665 3332 36899999999985
No 157
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=29.49 E-value=21 Score=25.85 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.0
Q ss_pred CCCcCCCCCCCCCcEEEEecCC
Q 028484 39 NSRPLGFYSPLQGYRLHVIDLD 60 (208)
Q Consensus 39 d~~~L~~y~i~~g~~IhV~D~~ 60 (208)
-+++|.+.++.+|..|+|.|..
T Consensus 64 L~k~l~eLgl~~g~ei~VtD~~ 85 (98)
T 1y8x_B 64 LSKTLKELGLVDGQELAVADVT 85 (98)
T ss_dssp HHSBSGGGTCCTTCEEEEECTT
T ss_pred hhCCHHHhCCCCCCEEEEECCC
Confidence 4678999999999999998853
No 158
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=28.11 E-value=24 Score=33.75 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=24.1
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEE
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELY 26 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~ 26 (208)
.|+.+|+.+|+..|||++++|.|.+.
T Consensus 332 ~tl~~l~~~i~~~T~i~~~~q~~~~~ 357 (676)
T 3qa8_A 332 ENLQNLKSWLQQDTGIPEEEQELLQA 357 (676)
T ss_dssp CCHHHHHHHHHTTSCCCSTTCEEESS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 47999999999999999999999884
No 159
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.46 E-value=54 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=14.2
Q ss_pred cCCCCcCCEEEEcCCCcee
Q 028484 121 CSNITVGDRCEVDPGAKRG 139 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G 139 (208)
...+.+|+.|+|..|.+.|
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g 23 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELIN 23 (59)
T ss_dssp CSSCCTTSEEEECSSTTTT
T ss_pred cccCCCCCEEEEeecCCCC
Confidence 3468999999998665444
No 160
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=27.08 E-value=22 Score=30.49 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=22.7
Q ss_pred CHHHHHHhcccccccCCCCeEEEE
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLEL 25 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l 25 (208)
|+.+|+++++..||+++++|.|.+
T Consensus 333 ~~~~~~~~~~~~t~i~~~~q~~l~ 356 (396)
T 4eut_A 333 TATIFHELVYKQTKIISSNQELIY 356 (396)
T ss_dssp BHHHHHHHHHHHHCCCSTTEEEES
T ss_pred HHHHHHHHHHHhcCCChhhhHHHh
Confidence 789999999999999999999987
No 161
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=27.07 E-value=1.1e+02 Score=19.38 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.|+.+|...| |.++....+.+ ++..+.. ..-.+..+++|.+|.++
T Consensus 14 ~tv~~ll~~l----~~~~~~v~vav---N~~~v~~-----~~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 14 KTLKEVLEEM----GVELKGVAVLL---NEEAFLG-----LEVPDRPLRDGDVVEVV 58 (64)
T ss_dssp CCHHHHHHHH----TBCGGGEEEEE---TTEEEEG-----GGCCCCCCCTTCEEEEE
T ss_pred CcHHHHHHHc----CCCCCcEEEEE---CCEECCc-----cccCCcCCCCCCEEEEE
Confidence 4888998888 45665555554 4544321 12234567899998886
No 162
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=26.59 E-value=31 Score=24.95 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=32.9
Q ss_pred cccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEecC
Q 028484 10 LWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 59 (208)
Q Consensus 10 Le~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D~ 59 (208)
.-...|+++++.++.+ +|..+ ..+.|-.++++++|..|-|.=+
T Consensus 50 Yc~r~gv~~~sirFlf---DG~rI----~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 50 MATHLGVSPSRILLLF---GETEL----SPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp HHHHHTSCGGGEEEEE---TTEEC----CTTSCHHHHTCCSSCEEEEEEC
T ss_pred HHhhcCCChhhEEEEE---CCcCC----CCCCCHhHcCCCCCCEEEEEEe
Confidence 3456799999999887 67664 4556667789999999888755
No 163
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=23.70 E-value=17 Score=24.63 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=19.1
Q ss_pred ccCCCcceeeecCHHHHhcchhhHHHHHHHh
Q 028484 70 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 70 l~D~s~vek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
|+|.+-.+-|.||-++|.+.+ +|||.+
T Consensus 33 LsdedF~~vFgms~~eF~~LP----~WKq~~ 59 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLP----LWKQQN 59 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSC----HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCh----HHHHHH
Confidence 344444456889999988765 798865
No 164
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=23.32 E-value=86 Score=19.65 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCCcCCEEEEcCC---CceeEEEEe
Q 028484 123 NITVGDRCEVDPG---AKRGVVKYV 144 (208)
Q Consensus 123 ~~~vG~rv~v~~~---~~~G~vryv 144 (208)
.+.+|++|.|..| +..|+|.-+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v 28 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEI 28 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEE
Confidence 5789999999755 566777665
No 165
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=22.60 E-value=14 Score=21.92 Aligned_cols=20 Identities=0% Similarity=0.195 Sum_probs=15.9
Q ss_pred eeeecCHHHHhcchhhHHHHHHHh
Q 028484 77 EKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 77 ek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
+-|.||-++|.+.+ .|||.+
T Consensus 8 ~vFgmsr~eF~~LP----~WKq~~ 27 (35)
T 1wy3_A 8 AVFGMTRSAFANLP----LWLQQH 27 (35)
T ss_dssp HHHSSCHHHHHHSC----HHHHHH
T ss_pred HHHCCCHHHHHHCc----HHHHHH
Confidence 35889999998866 798865
No 166
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=22.27 E-value=1.1e+02 Score=20.29 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEec
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 58 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~D 58 (208)
.||.+|-..| |+++...-+.+ +|..+. .....++.+++|.+|-|+-
T Consensus 15 ~Tl~~LL~~l----~~~~~~vAV~v---Ng~iVp-----r~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 15 ASVAALMTEL----DCTGGHFAVAL---NYDVVP-----RGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp SBHHHHHHHT----TCCSSSCEEEE---SSSEEC-----HHHHTTCBCCTTCEEEEEC
T ss_pred CcHHHHHHHc----CCCCCcEEEEE---CCEECC-----hHHcCcccCCCCCEEEEEc
Confidence 3677777765 66776666555 455532 1233456788999998884
No 167
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=22.17 E-value=52 Score=23.27 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=36.7
Q ss_pred CHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCC--CcCCCCCCCCCcEEEEe
Q 028484 2 SVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS--RPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 2 TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~--~~L~~y~i~~g~~IhV~ 57 (208)
+..+|..+|+.+..++...-.|.+.|.+|..+...+|++ +-|..- ++-.+|.|.
T Consensus 29 ~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a--~plLRl~Iq 84 (86)
T 1wmh_B 29 GFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASG--PPPLRLLVQ 84 (86)
T ss_dssp CHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSS--SSCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhC--CCcEEEEEE
Confidence 567899999999998888889999988888875433332 233322 345566553
No 168
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=21.34 E-value=19 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=19.4
Q ss_pred ccCCCcceeeecCHHHHhcchhhHHHHHHHh
Q 028484 70 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 70 l~D~s~vek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
|+|.+=.+-|.||-++|.+.+ +|||.+
T Consensus 33 LsdedF~~vFgmsr~eF~~LP----~WKq~~ 59 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALP----AWKQVN 59 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSC----HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCc----HHHHHH
Confidence 345444556899999998866 798865
No 169
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=21.28 E-value=70 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.4
Q ss_pred cCCCCcCCEEEEcCCCceeEEEEeccc
Q 028484 121 CSNITVGDRCEVDPGAKRGVVKYVGQA 147 (208)
Q Consensus 121 ~~~~~vG~rv~v~~~~~~G~vryvG~~ 147 (208)
...+++||+|++. +..|+|.-+|-.
T Consensus 126 ~~pf~vGD~I~i~--~~~G~V~~I~l~ 150 (285)
T 3udc_A 126 EDQFSVGDYVTIN--GISGTVEEIGLR 150 (285)
T ss_dssp TTSCCTTCEEEET--TEEEEEEEECSS
T ss_pred hCCccCCCEEEEC--CEEEEEEEeeee
Confidence 4679999999996 789999999865
No 170
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=21.01 E-value=1e+02 Score=19.64 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCHHHHHHhcccccccCCCCeEEEEEcCCCCeeeecCCCCCcCCCCCCCCCcEEEEe
Q 028484 1 MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 57 (208)
Q Consensus 1 ~TI~~LK~KLe~itGi~p~~m~L~l~~~~g~~~~~l~dd~~~L~~y~i~~g~~IhV~ 57 (208)
.|+.+|...| +.++....+.+ ++..+.. ....+..+++|.+|.++
T Consensus 16 ~tv~~ll~~l----~~~~~~v~vav---N~~~v~~-----~~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 16 QTVHELLEQL----DQRQAGAALAI---NQQIVPR-----EQWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCHHHHHHHH----TCCCSSEEEEE---TTEEECH-----HHHTTCCCCTTEEECEE
T ss_pred CcHHHHHHHc----CCCCCCEEEEE---CCEECCc-----hhcCCcCCCCCCEEEEE
Confidence 4788888887 45565555444 3444311 11234567889888776
No 171
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.00 E-value=57 Score=24.35 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=28.6
Q ss_pred CHHHHHHhccccc-ccCCCCeEEEEEcCCCCeeee
Q 028484 2 SVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVAA 35 (208)
Q Consensus 2 TI~~LK~KLe~it-Gi~p~~m~L~l~~~~g~~~~~ 35 (208)
|..+|+.|+..++ +.....-.|...|.+|..|..
T Consensus 58 s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 58 PSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAF 92 (117)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEe
Confidence 5678999999999 777778899999999987753
No 172
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=20.68 E-value=1.8e+02 Score=18.77 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=7.0
Q ss_pred CCCCCcEEEEe
Q 028484 47 SPLQGYRLHVI 57 (208)
Q Consensus 47 ~i~~g~~IhV~ 57 (208)
.+++|.+|-++
T Consensus 54 ~L~~gD~V~ii 64 (70)
T 1ryj_A 54 EIFDGDIIEVI 64 (70)
T ss_dssp BCCTTCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 56667666655
No 173
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=20.40 E-value=16 Score=21.85 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=16.4
Q ss_pred ceeeecCHHHHhcchhhHHHHHHHh
Q 028484 76 VEKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 76 vek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
.+-|.||-++|.+.+ +|||.+
T Consensus 9 ~~vFgmsr~eF~~LP----~WKq~~ 29 (37)
T 1und_A 9 VSVFGITRGQFAALP----GWKQLQ 29 (37)
T ss_dssp HHHHSSCHHHHHHSC----HHHHHH
T ss_pred HHHHCcCHHHHHHCh----HHHHHH
Confidence 345899999998866 798865
No 174
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=20.38 E-value=50 Score=23.97 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=27.9
Q ss_pred CHHHHHHhccccc-ccCCCCeEEEEEcCCCCeeee
Q 028484 2 SVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVAA 35 (208)
Q Consensus 2 TI~~LK~KLe~it-Gi~p~~m~L~l~~~~g~~~~~ 35 (208)
|..+|+.|+..++ +.....-.|...|.+|..+..
T Consensus 43 s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEE
T ss_pred cHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEe
Confidence 5789999999996 666677889999989987754
No 175
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=20.32 E-value=17 Score=24.67 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.4
Q ss_pred ccCCCcceeeecCHHHHhcchhhHHHHHHHh
Q 028484 70 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKV 100 (208)
Q Consensus 70 l~D~s~vek~~ls~e~Y~~r~dtv~~~k~~~ 100 (208)
|+|.+=.+-|.||-++|.+.+ +|||.+
T Consensus 34 LsdedF~~vFgmsr~eF~~LP----~WKq~~ 60 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLA----LWKRNE 60 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSC----HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCh----HHHHHH
Confidence 345554556889999998765 798865
Done!