Query 028487
Match_columns 208
No_of_seqs 193 out of 567
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.1 6.3E-11 2.2E-15 88.0 5.4 91 2-96 3-99 (101)
2 2dja_A Midline-2; tripartite m 96.8 0.00083 2.8E-08 47.9 3.5 57 39-99 2-61 (84)
3 2yvr_A Transcription intermedi 96.2 0.003 1E-07 40.9 2.8 42 53-98 6-47 (50)
4 2csv_A Tripartite motif protei 96.0 0.0039 1.3E-07 43.3 2.9 55 39-98 4-58 (72)
5 2d8u_A Ubiquitin ligase TRIM63 95.7 0.0042 1.4E-07 41.9 2.1 43 52-98 7-50 (64)
6 2did_A Tripartite motif protei 95.7 0.0065 2.2E-07 39.8 2.7 41 53-98 8-49 (53)
7 3ddt_A E3 ubiquitin-protein li 95.6 0.0085 2.9E-07 38.5 2.9 41 52-96 5-46 (48)
8 1fre_A Nuclear factor XNF7; zi 94.5 0.02 6.9E-07 35.5 2.3 30 54-84 4-34 (42)
9 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.019 6.6E-07 41.7 2.5 41 54-94 4-49 (101)
10 2yrg_A Tripartite motif-contai 94.3 0.029 1E-06 37.7 2.9 40 54-98 15-55 (59)
11 2ffw_A Midline-1; B-BOX, ring 94.2 0.025 8.7E-07 40.3 2.6 44 2-45 30-76 (78)
12 2egm_A Tripartite motif-contai 93.3 0.029 9.9E-07 37.5 1.4 32 52-84 17-49 (57)
13 2ffw_A Midline-1; B-BOX, ring 87.5 0.28 9.6E-06 34.7 2.2 42 52-93 29-75 (78)
14 2did_A Tripartite motif protei 83.7 0.8 2.7E-05 29.4 2.8 41 3-50 9-50 (53)
15 2d8v_A Zinc finger FYVE domain 83.4 0.84 2.9E-05 32.1 2.9 46 3-50 9-55 (67)
16 4hc9_A Trans-acting T-cell-spe 80.6 0.82 2.8E-05 35.0 2.2 81 2-82 5-89 (115)
17 2d8v_A Zinc finger FYVE domain 80.6 1 3.6E-05 31.6 2.6 46 51-97 6-53 (67)
18 2yvr_A Transcription intermedi 79.4 1.4 4.7E-05 27.9 2.7 41 3-49 7-47 (50)
19 2yrg_A Tripartite motif-contai 78.6 1.4 4.7E-05 29.2 2.7 41 3-50 15-56 (59)
20 2dja_A Midline-2; tripartite m 76.1 2.1 7.2E-05 29.8 3.1 41 4-50 20-61 (84)
21 2d8u_A Ubiquitin ligase TRIM63 73.6 1.9 6.4E-05 28.5 2.2 42 3-50 9-51 (64)
22 1fre_A Nuclear factor XNF7; zi 73.1 1.5 5E-05 26.7 1.5 30 4-34 5-35 (42)
23 3ddt_A E3 ubiquitin-protein li 72.3 2.5 8.6E-05 26.5 2.5 38 5-48 9-47 (48)
24 2fc7_A ZZZ3 protein; structure 67.7 14 0.00048 26.3 5.9 42 55-96 23-73 (82)
25 2egm_A Tripartite motif-contai 63.9 3 0.0001 27.4 1.6 30 4-34 20-50 (57)
26 1z60_A TFIIH basal transcripti 56.2 3.6 0.00012 28.0 0.9 21 65-85 30-50 (59)
27 1z60_A TFIIH basal transcripti 55.9 2.9 0.0001 28.4 0.4 32 4-35 17-51 (59)
28 2yqq_A Zinc finger HIT domain- 48.6 10 0.00035 25.5 2.2 23 54-77 13-35 (56)
29 2csv_A Tripartite motif protei 46.6 9.5 0.00033 25.7 1.9 39 3-48 19-57 (72)
30 2jne_A Hypothetical protein YF 45.6 15 0.0005 27.7 2.9 10 1-10 31-40 (101)
31 2jrp_A Putative cytoplasmic pr 40.7 28 0.00097 25.0 3.7 26 1-30 1-26 (81)
32 2fc7_A ZZZ3 protein; structure 40.2 29 0.00099 24.6 3.7 32 2-33 21-59 (82)
33 2lri_C Autoimmune regulator; Z 39.4 20 0.00067 24.4 2.6 46 3-62 13-59 (66)
34 2yqq_A Zinc finger HIT domain- 34.5 16 0.00056 24.5 1.5 28 4-33 14-42 (56)
35 4gne_A Histone-lysine N-methyl 33.0 51 0.0017 24.5 4.2 64 3-82 16-86 (107)
36 1x4s_A Protein FON, zinc finge 31.9 17 0.00057 24.8 1.2 32 53-85 11-46 (59)
37 1tot_A CREB-binding protein; z 31.6 14 0.00048 24.1 0.8 30 2-31 6-37 (52)
38 2epr_A POZ-, at HOOK-, and zin 29.5 24 0.00081 20.7 1.5 38 20-60 10-47 (48)
39 2ctu_A Zinc finger protein 483 29.1 40 0.0014 20.8 2.7 37 20-59 37-73 (73)
40 1x4s_A Protein FON, zinc finge 28.6 20 0.0007 24.4 1.2 31 3-34 12-46 (59)
41 2fiy_A Protein FDHE homolog; F 26.3 82 0.0028 27.6 5.0 64 2-82 182-262 (309)
42 2ysm_A Myeloid/lymphoid or mix 25.9 72 0.0025 23.0 3.9 69 3-87 8-83 (111)
43 3shb_A E3 ubiquitin-protein li 23.4 82 0.0028 21.9 3.6 15 20-34 39-53 (77)
44 2ct7_A Ring finger protein 31; 23.2 80 0.0027 22.0 3.6 22 65-86 43-67 (86)
45 2e5r_A Dystrobrevin alpha; ZZ 22.7 65 0.0022 21.6 2.9 30 3-32 12-45 (63)
46 2ytg_A ZFP-95, zinc finger pro 21.9 55 0.0019 18.5 2.2 37 20-59 10-46 (46)
47 2ytq_A Zinc finger protein 268 21.8 30 0.001 19.9 0.9 27 20-47 10-36 (46)
48 1faq_A RAF-1; transferase, ser 21.5 37 0.0013 21.1 1.4 25 3-34 15-39 (52)
49 1weo_A Cellulose synthase, cat 21.4 30 0.001 25.6 1.0 31 52-82 15-52 (93)
50 2dip_A Zinc finger SWIM domain 20.9 53 0.0018 24.1 2.3 29 54-82 32-64 (98)
51 2elz_A Zinc finger protein 224 20.8 36 0.0012 19.5 1.1 27 20-47 10-36 (46)
52 2lbm_A Transcriptional regulat 20.7 1.2E+02 0.0041 23.7 4.4 32 51-82 61-92 (142)
53 2epx_A Zinc finger protein 28 20.6 33 0.0011 19.6 0.9 37 20-59 10-47 (47)
54 2em7_A Zinc finger protein 224 20.1 34 0.0012 19.5 0.9 37 20-59 10-46 (46)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.11 E-value=6.3e-11 Score=88.00 Aligned_cols=91 Identities=24% Similarity=0.490 Sum_probs=75.0
Q ss_pred CCcccccCC---CceeEEecccccccchhhccccccCcccccccccc-ccCCC-CCCCCCCCCCCCCeeEEecCCCcccc
Q 028487 2 RTLCDVCES---AAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV-GLANP-SDVPRCDICENAPAFFYCEIDGSSLC 76 (208)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rv-pl~~~-~~~plCd~C~~~pA~~yC~~d~a~LC 76 (208)
...|++|.+ .+|+.+|..|.+.||..|...+|..++.+++|..+ |+.+. .....|+.|+..+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 367999984 68999999999999999999999988878899987 55432 35668999988999999999999999
Q ss_pred ccccc-cccCCCCCCccceEe
Q 028487 77 LQCDM-TVHVGGKRTHGRYLL 96 (208)
Q Consensus 77 ~~CD~-~~Hsan~~~H~R~~l 96 (208)
..|.. ..| +.|.-++|
T Consensus 83 ~~C~~~~~H----~~H~~~~l 99 (101)
T 2jun_A 83 ALCKLVGRH----RDHQVAAL 99 (101)
T ss_dssp HHHHHHTTT----SSSCBCCC
T ss_pred hhcCCCCCc----CCCCeecC
Confidence 99997 455 34555443
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=96.82 E-value=0.00083 Score=47.89 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=43.4
Q ss_pred cccccccccCC--CCCCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEeccc
Q 028487 39 ASRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLRQ 99 (208)
Q Consensus 39 ~~rH~Rvpl~~--~~~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~~ 99 (208)
+++|..+.-.. ......|+.|+..+..+||..|...+|..|... .| +.|.-+||..+
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea 61 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLNDR 61 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCSS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC----CCCCccCHHHH
Confidence 46787776554 345668999988899999999999999999983 44 46777666543
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=96.18 E-value=0.003 Score=40.87 Aligned_cols=42 Identities=21% Similarity=0.598 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEecc
Q 028487 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR 98 (208)
Q Consensus 53 ~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l~~ 98 (208)
...|+.|+..+..+||..|..++|..|....| +.|.-++|..
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H----~~H~~~~l~e 47 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH----KDHQYQFLED 47 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT----TTCCEEETTC
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC----CCCceecHHH
Confidence 35799998889999999999999999987555 4677776654
No 4
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=96.02 E-value=0.0039 Score=43.34 Aligned_cols=55 Identities=15% Similarity=0.376 Sum_probs=40.9
Q ss_pred cccccccccCCCCCCCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEecc
Q 028487 39 ASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR 98 (208)
Q Consensus 39 ~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l~~ 98 (208)
+++|+-+.-........|+.|. .+..+||..|...+|..|....| +.|.-+||..
T Consensus 4 ~~~H~L~~p~~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H----~~H~~~~l~e 58 (72)
T 2csv_A 4 GSSGQLLEPIRDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH----KNHSTVTVEE 58 (72)
T ss_dssp SCCCCCCCCSSSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT----SSSCEEEHHH
T ss_pred ccCCcccCCccccccCcCcccC-CceEEEeCCCCeEEccccCCCCC----CCCCEecHHH
Confidence 4567766533334557899995 88999999999999999986544 5677776654
No 5
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.75 E-value=0.0042 Score=41.91 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028487 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR 98 (208)
Q Consensus 52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~ 98 (208)
....|+.|+..+..+||..|..++|..|... .| +.|.-+||..
T Consensus 7 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~~ 50 (64)
T 2d8u_A 7 GHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQS 50 (64)
T ss_dssp CCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTTT
T ss_pred CCCcCcCcCCCccceEcCcCCceeCccccCCCcC----CCCCeeCHHH
Confidence 3457999988899999999999999999875 55 4677776654
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=95.68 E-value=0.0065 Score=39.76 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028487 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR 98 (208)
Q Consensus 53 ~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~ 98 (208)
..+|+.|. .+..+||..|...+|..|... .| +.|..+||.+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~e 49 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH----RAHTVVPLSG 49 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT----TTSCEEECCC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC----CCCcEeeHHH
Confidence 34799997 789999999999999999973 44 5677777664
No 7
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.55 E-value=0.0085 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEe
Q 028487 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLL 96 (208)
Q Consensus 52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l 96 (208)
+..+|+.|...+..+||..|..++|..|... .| +.|.-+||
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l 46 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPL 46 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT----TTSCEEEC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC----CCCcEEeC
Confidence 4468999988889999999999999999854 45 45666654
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.51 E-value=0.02 Score=35.47 Aligned_cols=30 Identities=27% Similarity=0.669 Sum_probs=25.8
Q ss_pred CCCCCCCCCCeeEEecCCCcccccccccc-cc
Q 028487 54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VH 84 (208)
Q Consensus 54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~H 84 (208)
.+|+.|. .+..+||..|...+|..|... .|
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 4799996 789999999999999999984 44
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.46 E-value=0.019 Score=41.69 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=34.2
Q ss_pred CCCCCCCC---CCeeEEecCCCccccccccccccCCCC--CCccce
Q 028487 54 PRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRY 94 (208)
Q Consensus 54 plCd~C~~---~pA~~yC~~d~a~LC~~CD~~~Hsan~--~~H~R~ 94 (208)
..|++|.. .+|..+|..|...+|..|....|..+. ++|.++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 47999984 579999999999999999998887554 577765
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.29 E-value=0.029 Score=37.69 Aligned_cols=40 Identities=23% Similarity=0.595 Sum_probs=32.6
Q ss_pred CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028487 54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR 98 (208)
Q Consensus 54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~ 98 (208)
.+|+.|. .+..+||..|...+|..|... -| +.|..+||.+
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH----~~H~~~~l~e 55 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH----RGHHTFPTSG 55 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT----TTCCEEECCS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC----CCCcEeeHHH
Confidence 4799997 689999999999999999984 34 5677777664
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=94.21 E-value=0.025 Score=40.27 Aligned_cols=44 Identities=25% Similarity=0.564 Sum_probs=36.9
Q ss_pred CCcccccCC---CceeEEecccccccchhhccccccCcccccccccc
Q 028487 2 RTLCDVCES---AAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV 45 (208)
Q Consensus 2 ~~~Cd~C~~---~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rv 45 (208)
...||+|.+ .+|+..|..|.+.||..|=...|...+.+++|.-+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999986 67999999999999999987679877777888744
No 12
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.28 E-value=0.029 Score=37.52 Aligned_cols=32 Identities=25% Similarity=0.676 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCeeEEecCCCcccccccccc-cc
Q 028487 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VH 84 (208)
Q Consensus 52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~H 84 (208)
...+|+.|. ++..+||..|...+|..|... .|
T Consensus 17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 445799995 789999999999999999973 44
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.49 E-value=0.28 Score=34.73 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=33.6
Q ss_pred CCCCCCCCCC---CCeeEEecCCCccccccccccccCCCC--CCccc
Q 028487 52 DVPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGR 93 (208)
Q Consensus 52 ~~plCd~C~~---~pA~~yC~~d~a~LC~~CD~~~Hsan~--~~H~R 93 (208)
....|++|.. .+|.-+|..|.+.+|..|....|.... ++|..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 3578999986 569999999999999999987687653 45554
No 14
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=83.74 E-value=0.8 Score=29.45 Aligned_cols=41 Identities=37% Similarity=0.678 Sum_probs=30.7
Q ss_pred CcccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP 50 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~ 50 (208)
..|..-. .+-.+||..|...+|..|-. .-|. .|..+||.++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHH
Confidence 4565555 57889999999999999975 4553 4777777654
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=83.42 E-value=0.84 Score=32.12 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.8
Q ss_pred CcccccCCCceeEEeccc-ccccchhhccccccCccccccccccccCCC
Q 028487 3 TLCDVCESAAAILFCAAD-EAALCRSCDEKVHMCNKLASRHVRVGLANP 50 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D-~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~ 50 (208)
+.|-+|... |+|.|..| .-.+|.+|=+..|.. .-.+.|+.+++..+
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYHPR 55 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCCCS
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeeccCC
Confidence 568899975 99999998 789999999999963 45789999998654
No 16
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=80.56 E-value=0.82 Score=35.00 Aligned_cols=81 Identities=19% Similarity=0.380 Sum_probs=52.5
Q ss_pred CCcccccCCCceeEEeccc-ccccchhhcc--ccccCccccccccccccCCCCCCCCCCCCCCCCeeEEec-CCCccccc
Q 028487 2 RTLCDVCESAAAILFCAAD-EAALCRSCDE--KVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCE-IDGSSLCL 77 (208)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~~D-~A~LC~~CD~--~vH~aN~l~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~-~d~a~LC~ 77 (208)
...|..|+.....+|=..+ ...||.+|.. +.|..+....+-.+...........|..|.......|-. ..+..||.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCN 84 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCN 84 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcch
Confidence 4679999985555555444 4589999984 556666544333322222224567899999877655543 45678999
Q ss_pred ccccc
Q 028487 78 QCDMT 82 (208)
Q Consensus 78 ~CD~~ 82 (208)
.|-+.
T Consensus 85 aCgl~ 89 (115)
T 4hc9_A 85 ACGLY 89 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 17
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=80.55 E-value=1 Score=31.62 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCeeEEecCC-CccccccccccccCCCC-CCccceEec
Q 028487 51 SDVPRCDICENAPAFFYCEID-GSSLCLQCDMTVHVGGK-RTHGRYLLL 97 (208)
Q Consensus 51 ~~~plCd~C~~~pA~~yC~~d-~a~LC~~CD~~~Hsan~-~~H~R~~l~ 97 (208)
...+.|-+|... |.+.|..| .-..|..|-...|..-. +.|+-++..
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYH 53 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccchhhhccceeecc
Confidence 467899999866 99999998 78999999999997554 788886643
No 18
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=79.37 E-value=1.4 Score=27.88 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=30.8
Q ss_pred CcccccCCCceeEEecccccccchhhccccccCccccccccccccCC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAN 49 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~ 49 (208)
..|..-...+-.+||..|...+|..|-..-|. .|.-++|.+
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHH
Confidence 35666645677899999999999999765553 477777764
No 19
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.60 E-value=1.4 Score=29.23 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=29.9
Q ss_pred CcccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP 50 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~ 50 (208)
..|..-. .+-.+||..|...+|..|.. .-|. .|..+||.++
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHH
Confidence 3455554 46789999999999999986 4443 4777777654
No 20
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=76.07 E-value=2.1 Score=29.78 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=30.7
Q ss_pred cccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028487 4 LCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP 50 (208)
Q Consensus 4 ~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~ 50 (208)
.|..-...+-.+||..|...+|..|-. .-|. .|.-+||.++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHH
Confidence 465554456889999999999999976 4553 4777777654
No 21
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=73.59 E-value=1.9 Score=28.48 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=31.6
Q ss_pred CcccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP 50 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~ 50 (208)
..|..-...+-.+||..|...+|..|-. .-|. .|.-+||.++
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a 51 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSV 51 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHH
Confidence 3566664567789999999999999975 3564 4888888764
No 22
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=73.06 E-value=1.5 Score=26.72 Aligned_cols=30 Identities=23% Similarity=0.553 Sum_probs=22.9
Q ss_pred cccccCCCceeEEecccccccchhhcc-cccc
Q 028487 4 LCDVCESAAAILFCAADEAALCRSCDE-KVHM 34 (208)
Q Consensus 4 ~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~ 34 (208)
.|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 455554 56789999999999999975 4443
No 23
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=72.28 E-value=2.5 Score=26.47 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=25.8
Q ss_pred ccccCCCceeEEecccccccchhhc-cccccCccccccccccccC
Q 028487 5 CDVCESAAAILFCAADEAALCRSCD-EKVHMCNKLASRHVRVGLA 48 (208)
Q Consensus 5 Cd~C~~~~A~vyC~~D~A~LC~~CD-~~vH~aN~l~~rH~Rvpl~ 48 (208)
|..=...+-.+||..|...+|..|- ..-|.. |.-+||.
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~ 47 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA------CEVAPLQ 47 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTTT------SCEEECC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCCC------CcEEeCC
Confidence 4433334578999999999999996 345643 5555553
No 24
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=67.72 E-value=14 Score=26.31 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=29.3
Q ss_pred CCCCCCCCCe---eEEecCCCc----cccccccccccCCCC--CCccceEe
Q 028487 55 RCDICENAPA---FFYCEIDGS----SLCLQCDMTVHVGGK--RTHGRYLL 96 (208)
Q Consensus 55 lCd~C~~~pA---~~yC~~d~a----~LC~~CD~~~Hsan~--~~H~R~~l 96 (208)
.|+.|...+. .|.|..|.- -||..|-...+.... ..|.-.++
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i 73 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 73 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEe
Confidence 6999998774 489999964 799999987443333 24544443
No 25
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.88 E-value=3 Score=27.41 Aligned_cols=30 Identities=40% Similarity=0.856 Sum_probs=23.1
Q ss_pred cccccCCCceeEEecccccccchhhcc-cccc
Q 028487 4 LCDVCESAAAILFCAADEAALCRSCDE-KVHM 34 (208)
Q Consensus 4 ~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~ 34 (208)
.|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 20 ~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 465553 57889999999999999975 4443
No 26
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.18 E-value=3.6 Score=27.99 Aligned_cols=21 Identities=29% Similarity=0.836 Sum_probs=19.0
Q ss_pred eEEecCCCccccccccccccC
Q 028487 65 FFYCEIDGSSLCLQCDMTVHV 85 (208)
Q Consensus 65 ~~yC~~d~a~LC~~CD~~~Hs 85 (208)
.+.|..|...+|.+||+-+|.
T Consensus 30 ~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 30 VYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EECCTTTTCCBCHHHHHTTTT
T ss_pred cEECCccCcCcccchhHHHHh
Confidence 477999999999999999984
No 27
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.93 E-value=2.9 Score=28.44 Aligned_cols=32 Identities=28% Similarity=0.667 Sum_probs=25.2
Q ss_pred cccccCCCc---eeEEecccccccchhhccccccC
Q 028487 4 LCDVCESAA---AILFCAADEAALCRSCDEKVHMC 35 (208)
Q Consensus 4 ~Cd~C~~~~---A~vyC~~D~A~LC~~CD~~vH~a 35 (208)
.|-.|...- .++.|..+...+|..||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 477777632 34669999999999999999963
No 28
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.61 E-value=10 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.0
Q ss_pred CCCCCCCCCCeeEEecCCCccccc
Q 028487 54 PRCDICENAPAFFYCEIDGSSLCL 77 (208)
Q Consensus 54 plCd~C~~~pA~~yC~~d~a~LC~ 77 (208)
.+|.+|.. ++.|.|..|.+..|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 47999999 999999999999886
No 29
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=46.58 E-value=9.5 Score=25.72 Aligned_cols=39 Identities=28% Similarity=0.560 Sum_probs=27.8
Q ss_pred CcccccCCCceeEEecccccccchhhccccccCccccccccccccC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLA 48 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~ 48 (208)
..|..-+ .+-.+||..|...+|..|-..-|. .|.-++|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ 57 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVE 57 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHH
Confidence 3465553 678899999999999999765554 35555544
No 30
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.58 E-value=15 Score=27.67 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=4.3
Q ss_pred CCCcccccCC
Q 028487 1 MRTLCDVCES 10 (208)
Q Consensus 1 m~~~Cd~C~~ 10 (208)
|...|-.|+.
T Consensus 31 M~~~CP~Cq~ 40 (101)
T 2jne_A 31 MELHCPQCQH 40 (101)
T ss_dssp CCCBCSSSCS
T ss_pred ccccCccCCC
Confidence 3344444443
No 31
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.67 E-value=28 Score=25.02 Aligned_cols=26 Identities=31% Similarity=0.730 Sum_probs=13.2
Q ss_pred CCCcccccCCCceeEEecccccccchhhcc
Q 028487 1 MRTLCDVCESAAAILFCAADEAALCRSCDE 30 (208)
Q Consensus 1 m~~~Cd~C~~~~A~vyC~~D~A~LC~~CD~ 30 (208)
|...|-.|...... ....+.|..|+.
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~ 26 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAK 26 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccc
Confidence 55666666654331 233344666653
No 32
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=40.20 E-value=29 Score=24.62 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=24.8
Q ss_pred CCcccccCCCc---eeEEeccccc----ccchhhccccc
Q 028487 2 RTLCDVCESAA---AILFCAADEA----ALCRSCDEKVH 33 (208)
Q Consensus 2 ~~~Cd~C~~~~---A~vyC~~D~A----~LC~~CD~~vH 33 (208)
...||.|+..+ -.+.|..|.. -||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 45799999765 4589999875 59999986544
No 33
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.44 E-value=20 Score=24.40 Aligned_cols=46 Identities=22% Similarity=0.478 Sum_probs=27.8
Q ss_pred CcccccCCCceeEEecccccccchhhccccccCccccccccccccCCC-CCCCCCCCCCCC
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANP-SDVPRCDICENA 62 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~-~~~plCd~C~~~ 62 (208)
..|.+|+.. +...+|..|+...|..= + +.||.+. ...++|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~C-----l-~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRC-----H-FPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHH-----H-CTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceeccc-----C-CCccCcCCCCCEECccccCC
Confidence 458888853 45677778887777521 1 2333332 445788888643
No 34
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.51 E-value=16 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=24.3
Q ss_pred cccccCCCceeEEecccccccch-hhccccc
Q 028487 4 LCDVCESAAAILFCAADEAALCR-SCDEKVH 33 (208)
Q Consensus 4 ~Cd~C~~~~A~vyC~~D~A~LC~-~CD~~vH 33 (208)
+|++|+. ++.+.|..+.+..|. .|- +.|
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~-k~H 42 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF-RKH 42 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH-HHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH-HHH
Confidence 6999999 999999999999998 775 444
No 35
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.00 E-value=51 Score=24.54 Aligned_cols=64 Identities=22% Similarity=0.484 Sum_probs=38.7
Q ss_pred CcccccCCCceeEEecccccccch--hhccccccCccccccccccccCCCCCCCC-----CCCCCCCCeeEEecCCCccc
Q 028487 3 TLCDVCESAAAILFCAADEAALCR--SCDEKVHMCNKLASRHVRVGLANPSDVPR-----CDICENAPAFFYCEIDGSSL 75 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~--~CD~~vH~aN~l~~rH~Rvpl~~~~~~pl-----Cd~C~~~pA~~yC~~d~a~L 75 (208)
..|..|+.. ....+|. .|+.-.|.. = +. =..+| ...+. |.+|+. ++.+.|..|...+
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~-C-l~-L~~~P----~g~W~Cp~c~C~~C~k-~~~~~C~~Cp~sf 79 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLL-C-LN-LTQPP----YGKWECPWHQCDECSS-AAVSFCEFCPHSF 79 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTG-G-GT-CSSCC----SSCCCCGGGBCTTTCS-BCCEECSSSSCEE
T ss_pred CCCCcCCCC--------CcEeEECCCCCCcccccc-c-Cc-CCcCC----CCCEECCCCCCCcCCC-CCCcCcCCCCcch
Confidence 357777642 3455677 788777752 1 11 11122 22344 445553 4669999999999
Q ss_pred ccccccc
Q 028487 76 CLQCDMT 82 (208)
Q Consensus 76 C~~CD~~ 82 (208)
|.+|...
T Consensus 80 C~~c~~g 86 (107)
T 4gne_A 80 CKDHEKG 86 (107)
T ss_dssp CTTTCTT
T ss_pred hhhccCC
Confidence 9988764
No 36
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=31.93 E-value=17 Score=24.78 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=25.5
Q ss_pred CCCCCCCCC---CCeeEEecCCCccccc-cccccccC
Q 028487 53 VPRCDICEN---APAFFYCEIDGSSLCL-QCDMTVHV 85 (208)
Q Consensus 53 ~plCd~C~~---~pA~~yC~~d~a~LC~-~CD~~~Hs 85 (208)
..+|.+|.. .++.+.|..|.+..|. .|-. .|.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~Hk 46 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-THG 46 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHH-HHC
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHH-HHh
Confidence 458999985 6899999999999997 5655 453
No 37
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=31.60 E-value=14 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=23.5
Q ss_pred CCcccccCCC-ceeEEecccccc-cchhhccc
Q 028487 2 RTLCDVCESA-AAILFCAADEAA-LCRSCDEK 31 (208)
Q Consensus 2 ~~~Cd~C~~~-~A~vyC~~D~A~-LC~~CD~~ 31 (208)
...|+.|... ...+.|..+..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4579999974 256999999877 99999654
No 38
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.46 E-value=24 Score=20.67 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=23.7
Q ss_pred cccccchhhccccccCccccccccccccCCCCCCCCCCCCC
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C~ 60 (208)
...+.|..|+...-.. ..+.+|.|+...+ ..-.|++|.
T Consensus 10 ~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~--k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDV-YHLNRHKLSHSGE--KPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSH-HHHHHHGGGSCSC--CCCCSCCCC
T ss_pred CcCeeCCCCCcccCCH-HHHHHHHHhcCCC--CCccCCCCC
Confidence 3456788888766553 3478888876432 234577764
No 39
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=40 Score=20.85 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=23.7
Q ss_pred cccccchhhccccccCccccccccccccCCCCCCCCCCCC
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDIC 59 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C 59 (208)
...+.|..|+...-... .+.+|.|+...+ ..-.|+.|
T Consensus 37 ~~~~~C~~C~~~f~~~~-~l~~H~~~H~~~--~~~~C~~C 73 (73)
T 2ctu_A 37 RKTPMCEKCRKDSCQEA-ALNKDEGNESGK--KTSGPSSG 73 (73)
T ss_dssp SSSCCCHHHHHTCSCCC-SSCCCSSCCCCC--CCSSCCCC
T ss_pred CCCCCCCCCChhhcCHH-HHHHHHHhhcCC--CCCCCCCC
Confidence 56778999998776544 478888875322 22345554
No 40
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.55 E-value=20 Score=24.35 Aligned_cols=31 Identities=26% Similarity=0.566 Sum_probs=25.7
Q ss_pred CcccccCC---CceeEEecccccccch-hhcccccc
Q 028487 3 TLCDVCES---AAAILFCAADEAALCR-SCDEKVHM 34 (208)
Q Consensus 3 ~~Cd~C~~---~~A~vyC~~D~A~LC~-~CD~~vH~ 34 (208)
.+|.+|.. .+|...|..|.+..|. .|-. .|.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k-~Hk 46 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYR-THG 46 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHHH-HHC
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHHH-HHh
Confidence 37999985 7899999999999998 8874 453
No 41
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.31 E-value=82 Score=27.55 Aligned_cols=64 Identities=27% Similarity=0.537 Sum_probs=41.3
Q ss_pred CCcccccCCCceeEEec----cc--ccccchhhccccccCccccccccccccCCCCCCCCCCCCCCCCeeEEec-CC---
Q 028487 2 RTLCDVCESAAAILFCA----AD--EAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCE-ID--- 71 (208)
Q Consensus 2 ~~~Cd~C~~~~A~vyC~----~D--~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~-~d--- 71 (208)
+..|-+|++.|..-+-. .+ +-..|.-|...-| ..|+ .|..|+...-..|-. ..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~--------~~R~---------~C~~Cg~~~~l~y~~~e~~~~ 244 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH--------YVRI---------KCSHCEESKHLAYLSLEHDGQ 244 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE--------CCTT---------SCSSSCCCSCCEEECCCC-CC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe--------ecCc---------CCcCCCCCCCeeEEEecCccc
Confidence 35799999977443333 12 2467999986555 4455 599999865444432 22
Q ss_pred -------Ccccccccccc
Q 028487 72 -------GSSLCLQCDMT 82 (208)
Q Consensus 72 -------~a~LC~~CD~~ 82 (208)
.+-.|..|...
T Consensus 245 ~~~~~~~r~e~C~~C~~Y 262 (309)
T 2fiy_A 245 PAEKAVLRAETCPSCQGY 262 (309)
T ss_dssp CSTTCSEEEEEETTTTEE
T ss_pred cCCCcceEEEEcccccch
Confidence 46788888866
No 42
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.90 E-value=72 Score=23.02 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=36.1
Q ss_pred CcccccCCCceeEEecccccccchhhccccccCccccccccccccCCCCCCCCCCCCCCCCeeEEecCC-------Cccc
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEID-------GSSL 75 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~~d-------~a~L 75 (208)
..|.+|+..--. ..-.+|..|....|..=--+. -.++ +...+.|..|. +|..| .+.+
T Consensus 8 ~~C~~C~~~g~~-----~~ll~C~~C~~~~H~~Cl~~~---~~~~--~~~~W~C~~C~------~C~~C~~~~~~~~ll~ 71 (111)
T 2ysm_A 8 ANCAVCDSPGDL-----LDQFFCTTCGQHYHGMCLDIA---VTPL--KRAGWQCPECK------VCQNCKQSGEDSKMLV 71 (111)
T ss_dssp SCBTTTCCCCCT-----TTSEECSSSCCEECTTTTTCC---CCTT--TSTTCCCTTTC------CCTTTCCCSCCTTEEE
T ss_pred CCCcCCCCCCCC-----cCCeECCCCCCCcChHHhCCc---cccc--cccCccCCcCC------cccccCccCCCCCeeE
Confidence 467888764211 122577778777775311000 0111 12344555553 23322 4788
Q ss_pred cccccccccCCC
Q 028487 76 CLQCDMTVHVGG 87 (208)
Q Consensus 76 C~~CD~~~Hsan 87 (208)
|..|+..-|..-
T Consensus 72 Cd~C~~~yH~~C 83 (111)
T 2ysm_A 72 CDTCDKGYHTFC 83 (111)
T ss_dssp CSSSCCEEEGGG
T ss_pred CCCCCcHHhHHh
Confidence 888888877654
No 43
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=23.43 E-value=82 Score=21.92 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=9.2
Q ss_pred cccccchhhcccccc
Q 028487 20 DEAALCRSCDEKVHM 34 (208)
Q Consensus 20 D~A~LC~~CD~~vH~ 34 (208)
+...+|..|+...|.
T Consensus 39 ~~ll~CD~C~~~yH~ 53 (77)
T 3shb_A 39 DKQLMCDECDMAFHI 53 (77)
T ss_dssp GGEEECTTTCCEEET
T ss_pred cceeEeCCCCCccCc
Confidence 345666677766664
No 44
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.23 E-value=80 Score=21.95 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.5
Q ss_pred eEEecCCCccccccccccc---cCC
Q 028487 65 FFYCEIDGSSLCLQCDMTV---HVG 86 (208)
Q Consensus 65 ~~yC~~d~a~LC~~CD~~~---Hsa 86 (208)
.+.|..|+..+|..|...- |..
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~~~H~~ 67 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWEEQHRG 67 (86)
T ss_dssp CEECTTTCCEECSSSCSBCCTTTTT
T ss_pred ceEeCCCCCccccccCCchhhcCCC
Confidence 4789999999999999876 754
No 45
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=65 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=23.3
Q ss_pred CcccccCCCc---eeEEecccccc-cchhhcccc
Q 028487 3 TLCDVCESAA---AILFCAADEAA-LCRSCDEKV 32 (208)
Q Consensus 3 ~~Cd~C~~~~---A~vyC~~D~A~-LC~~CD~~v 32 (208)
..||.|+..| -.+.|..+..+ ||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999754 66889888554 999997653
No 46
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.94 E-value=55 Score=18.55 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=22.0
Q ss_pred cccccchhhccccccCccccccccccccCCCCCCCCCCCC
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDIC 59 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C 59 (208)
...+.|..|+...-... .+.+|.++-..+ ..-.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~-~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRV-HLTQHQRVHTGE--KPSGPSSG 46 (46)
T ss_dssp CCSEECTTTCCEESSSH-HHHTTGGGGSSC--CSSCSCCC
T ss_pred CCCeECCCCCcccCCHH-HHHHHHHHcCCC--CCCCCCCC
Confidence 34567888887766543 477888775332 22345544
No 47
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.80 E-value=30 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=17.9
Q ss_pred cccccchhhccccccCcccccccccccc
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGL 47 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl 47 (208)
...+.|..|+...-... .+.+|.|+..
T Consensus 10 ~k~~~C~~C~k~f~~~~-~L~~H~~~H~ 36 (46)
T 2ytq_A 10 EKPYGCSECGKAFSSKS-YLIIHMRTHS 36 (46)
T ss_dssp CCSCBCSSSCCBCSCHH-HHHHHHTTTC
T ss_pred CCCcCCCccChhhCChH-HHHHHHHHhC
Confidence 34567888887766543 4777887753
No 48
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=21.47 E-value=37 Score=21.13 Aligned_cols=25 Identities=32% Similarity=0.930 Sum_probs=20.0
Q ss_pred CcccccCCCceeEEecccccccchhhcccccc
Q 028487 3 TLCDVCESAAAILFCAADEAALCRSCDEKVHM 34 (208)
Q Consensus 3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~ 34 (208)
..|+.|++ .+| .++.|..|...+|.
T Consensus 15 t~C~~C~~---~l~----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 15 AFCDICQK---FLL----NGFRCQTCGYKFHE 39 (52)
T ss_dssp EECTTSSS---EEC----SEEECTTTTCCBCS
T ss_pred cCCCCccc---ccc----cCCEeCCCCCeECh
Confidence 46888987 344 78999999999986
No 49
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.35 E-value=30 Score=25.57 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCC-------eeEEecCCCcccccccccc
Q 028487 52 DVPRCDICENAP-------AFFYCEIDGSSLCLQCDMT 82 (208)
Q Consensus 52 ~~plCd~C~~~p-------A~~yC~~d~a~LC~~CD~~ 82 (208)
..++|.+|.... .++-|..|+-++|..|-..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY 52 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY 52 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH
Confidence 557999999763 6788999999999999876
No 50
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.90 E-value=53 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.593 Sum_probs=23.5
Q ss_pred CCCCCCCCCC---eeEEecCC-Ccccccccccc
Q 028487 54 PRCDICENAP---AFFYCEID-GSSLCLQCDMT 82 (208)
Q Consensus 54 plCd~C~~~p---A~~yC~~d-~a~LC~~CD~~ 82 (208)
..|+.|...+ ..|.|..| .--||..|-..
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 4799999876 45889998 56799999776
No 51
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.78 E-value=36 Score=19.47 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.8
Q ss_pred cccccchhhccccccCcccccccccccc
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGL 47 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl 47 (208)
...+.|..|+...-... .+.+|.|+..
T Consensus 10 ~k~~~C~~C~k~F~~~~-~L~~H~~~H~ 36 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRRL-NLDMHQRVHM 36 (46)
T ss_dssp CSSCBCSSSCCBCSSHH-HHHHHGGGGG
T ss_pred CCCeeCcccCchhCCHH-HHHHHHHhcC
Confidence 34577888887665533 4677887653
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.70 E-value=1.2e+02 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.565 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCeeEEecCCCcccccccccc
Q 028487 51 SDVPRCDICENAPAFFYCEIDGSSLCLQCDMT 82 (208)
Q Consensus 51 ~~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~ 82 (208)
..--.|.+|...--.+-|..|...+|..|...
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILR 92 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHH
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCC
Confidence 34567999998888889999999999999874
No 53
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=33 Score=19.55 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=21.9
Q ss_pred cccccchhhccccccCccccccccc-cccCCCCCCCCCCCC
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVR-VGLANPSDVPRCDIC 59 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~R-vpl~~~~~~plCd~C 59 (208)
...+.|..|+...-... .+.+|.| +-..+ ....|++|
T Consensus 10 ~k~~~C~~C~k~F~~~~-~L~~H~~~~H~~~--k~~~C~~C 47 (47)
T 2epx_A 10 KKPYECIECGKAFIQNT-SLIRHWRYYHTGE--KPSGPSSG 47 (47)
T ss_dssp CCSBCCSSSCCCBSSHH-HHHHHHTTTTTTS--CSSSCCCC
T ss_pred CCCEECCccCchhCChH-HHHHHhHhhcCCC--CCCCCCCC
Confidence 34577888887766543 4778887 64322 22345554
No 54
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=34 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=21.6
Q ss_pred cccccchhhccccccCccccccccccccCCCCCCCCCCCC
Q 028487 20 DEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDIC 59 (208)
Q Consensus 20 D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~~~~plCd~C 59 (208)
...+.|..|+...-.. ..+.+|.|+-..+ ....|++|
T Consensus 10 ~k~~~C~~C~k~f~~~-~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2em7_A 10 EKPYKCEECGKGFICR-RDLYTHHMVHTGE--KPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESCH-HHHHHHGGGGTTC--CCSSTTCC
T ss_pred CcCccCCCccchhCCH-HHHHHHHHHhCCC--CCCCCCCC
Confidence 3456788888766553 3477888775332 22345554
Done!