Query 028489
Match_columns 208
No_of_seqs 136 out of 264
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 20:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 98.5 2.3E-07 7.8E-12 68.3 6.0 51 141-191 18-69 (82)
2 4ati_A MITF, microphthalmia-as 98.2 2E-06 6.8E-11 67.3 5.9 47 141-187 39-89 (118)
3 4h10_B Circadian locomoter out 98.1 4.4E-06 1.5E-10 60.7 5.4 44 141-184 20-64 (71)
4 1a0a_A BHLH, protein (phosphat 98.0 1.1E-06 3.6E-11 62.1 0.0 41 141-181 14-61 (63)
5 1nkp_B MAX protein, MYC proto- 97.9 2.4E-05 8.1E-10 57.0 6.5 48 141-188 14-63 (83)
6 1an4_A Protein (upstream stimu 97.9 2.4E-06 8.1E-11 59.7 0.6 41 141-181 17-63 (65)
7 1nkp_A C-MYC, MYC proto-oncoge 97.8 3.4E-05 1.2E-09 57.5 6.1 49 141-189 18-69 (88)
8 1hlo_A Protein (transcription 97.8 2.4E-05 8.3E-10 56.8 5.1 51 141-191 24-76 (80)
9 4h10_A ARYL hydrocarbon recept 97.7 1E-05 3.5E-10 58.8 1.5 38 141-178 21-62 (73)
10 1nlw_A MAD protein, MAX dimeri 97.4 0.00051 1.7E-08 50.4 6.7 50 141-190 13-65 (80)
11 3u5v_A Protein MAX, transcript 97.2 0.00018 6.2E-09 52.5 3.1 43 141-183 17-63 (76)
12 4ath_A MITF, microphthalmia-as 96.7 0.0029 9.8E-08 47.3 5.6 46 141-186 4-53 (83)
13 1mdy_A Protein (MYOD BHLH doma 96.5 0.002 6.7E-08 46.1 3.7 41 141-181 24-66 (68)
14 2ql2_B Neurod1, neurogenic dif 96.0 0.0073 2.5E-07 42.0 4.3 41 141-181 14-57 (60)
15 2lfh_A DNA-binding protein inh 95.7 0.012 4E-07 42.5 4.4 38 141-178 26-66 (68)
16 4f3l_A Mclock, circadian locom 94.9 0.028 9.6E-07 49.3 5.0 40 141-180 24-64 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 92.3 0.092 3.2E-06 46.7 3.6 39 141-179 25-67 (387)
18 4aya_A DNA-binding protein inh 91.9 0.23 7.8E-06 37.9 5.0 38 143-180 39-79 (97)
19 2fhx_A SPM-1; metallo-beta-lac 55.6 4.1 0.00014 32.4 1.3 36 147-182 208-245 (246)
20 3muj_A Transcription factor CO 51.2 12 0.00041 30.1 3.4 39 139-177 91-133 (138)
21 1m2x_A Class B carbapenemase B 43.7 10 0.00036 29.7 2.0 32 152-183 190-221 (223)
22 1a7t_A Metallo-beta-lactamase; 43.1 18 0.00063 28.5 3.3 36 146-181 190-229 (232)
23 1pd7_B MAD1; PAH2, SIN3, eukar 36.4 29 0.001 20.5 2.6 18 162-179 3-20 (26)
24 4i1l_A Scurfin, forkhead box p 36.3 45 0.0015 25.2 4.3 34 155-188 17-59 (93)
25 2y8b_A Metallo-B-lactamase; hy 32.5 17 0.00057 29.8 1.5 37 146-182 223-263 (265)
26 3qwg_A ESX-1 secretion-associa 31.1 95 0.0033 23.2 5.5 52 143-194 5-72 (123)
27 3r1f_A ESX-1 secretion-associa 29.4 1.1E+02 0.0039 23.1 5.8 52 143-194 7-74 (135)
28 1pyi_A Protein (pyrimidine pat 27.6 1.2E+02 0.004 21.0 5.2 22 172-193 48-69 (96)
29 1wr6_A ADP-ribosylation factor 21.1 1.1E+02 0.0037 23.1 4.1 47 139-187 8-58 (111)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.47 E-value=2.3e-07 Score=68.25 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=45.3
Q ss_pred chHHHHHHHhhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC-RKQPFPVILEEATDYIAALEMQVRAMTALAELL 191 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg-~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~l 191 (208)
+..|+.++..|+.||||+ .+++-.++|++|++||..|+.||..|..=.+.|
T Consensus 18 R~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 18 RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999998 799999999999999999999999988644433
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.20 E-value=2e-06 Score=67.31 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=42.1
Q ss_pred chHHHHHHHhhcccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGCR----KQPFPVILEEATDYIAALEMQVRAMTAL 187 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg~----~m~~~~LL~Et~dYI~~Lq~QV~vm~~L 187 (208)
+..|+.++..|+.|||+|. +++-.++|++|++||..|+-|+..|+..
T Consensus 39 R~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 39 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999986 4679999999999999999999988764
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.09 E-value=4.4e-06 Score=60.69 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=39.8
Q ss_pred chHHHHHHHhhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC-RKQPFPVILEEATDYIAALEMQVRAM 184 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg-~~m~~~~LL~Et~dYI~~Lq~QV~vm 184 (208)
+..|+.++..|+.|||++ .+||-.++|++|++||..|+.++.-|
T Consensus 20 Rd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 20 RDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 568999999999999975 59999999999999999999988654
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=97.96 E-value=1.1e-06 Score=62.12 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=36.3
Q ss_pred chHHHHHHHhhcccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC-------RKQPFPVILEEATDYIAALEMQV 181 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg-------~~m~~~~LL~Et~dYI~~Lq~QV 181 (208)
+..|+..+..|+.|||+| .+++-+++|++|+|||..|+-||
T Consensus 14 R~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 14 RNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999965 45569999999999999999876
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.91 E-value=2.4e-05 Score=57.03 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=42.3
Q ss_pred chHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC--RKQPFPVILEEATDYIAALEMQVRAMTALA 188 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg--~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~ 188 (208)
...|+..+..|+.|||++ .+++-.++|.+|++||..|+.++.-|+.-.
T Consensus 14 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999984 789999999999999999999888777533
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=97.87 E-value=2.4e-06 Score=59.74 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=37.2
Q ss_pred chHHHHHHHhhcccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGCR------KQPFPVILEEATDYIAALEMQV 181 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg~------~m~~~~LL~Et~dYI~~Lq~QV 181 (208)
...|+..+..|+.|||+|. +++-.++|++|++||..|+-|+
T Consensus 17 R~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 17 RDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5579999999999999987 6799999999999999999764
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.82 E-value=3.4e-05 Score=57.45 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.6
Q ss_pred chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQVRAMTALAE 189 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~ 189 (208)
...|+..+..|+.+||++ .+++-.++|..|++||..|+-++.-+..-.+
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999975 6899999999999999999999887665443
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.81 E-value=2.4e-05 Score=56.79 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=44.7
Q ss_pred chHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC--RKQPFPVILEEATDYIAALEMQVRAMTALAELL 191 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg--~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~l 191 (208)
...|+..+..|+.|||++ .+++-.++|..|++||..|+-++.-|+.-.+-|
T Consensus 24 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 24 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999986 589999999999999999999999888654433
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=97.69 E-value=1e-05 Score=58.77 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=35.3
Q ss_pred chHHHHHHHhhcccCCCC----CCCChhhHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC----RKQPFPVILEEATDYIAALE 178 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg----~~m~~~~LL~Et~dYI~~Lq 178 (208)
+..|++.+..|+.|||+| .++|-.++|++|++||..|+
T Consensus 21 R~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 21 RDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp HHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 568999999999999988 68999999999999999986
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=97.35 E-value=0.00051 Score=50.36 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=42.2
Q ss_pred chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQVRAMTALAEL 190 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~ 190 (208)
+..++..+..|+.+||.+ .++....+|..|++||..|+-++.-|..-.+.
T Consensus 13 R~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999965 57788999999999999999999877654443
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=97.22 E-value=0.00018 Score=52.45 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=37.0
Q ss_pred chHHHHHHHhhcccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPG---CRKQ-PFPVILEEATDYIAALEMQVRA 183 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPG---g~~m-~~~~LL~Et~dYI~~Lq~QV~v 183 (208)
...|+..+..|+.+||. +++. .-.++|..|++||..|+-||+-
T Consensus 17 r~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e 63 (76)
T 3u5v_A 17 RRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999995 4454 6788999999999999999964
No 12
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=96.68 E-value=0.0029 Score=47.28 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=37.9
Q ss_pred chHHHHHHHhhcccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPGCR----KQPFPVILEEATDYIAALEMQVRAMTA 186 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPGg~----~m~~~~LL~Et~dYI~~Lq~QV~vm~~ 186 (208)
+..|+.++..|..|||.+. +.+-..+|.-++|||..|+-.+.=|..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999864 368899999999999999776654443
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=96.54 E-value=0.002 Score=46.07 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=35.8
Q ss_pred chHHHHHHHhhcccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPG--CRKQPFPVILEEATDYIAALEMQV 181 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPG--g~~m~~~~LL~Et~dYI~~Lq~QV 181 (208)
...|+.-+..|+.+||. +.++.-.+.|..|++||.+|+-++
T Consensus 24 ~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 24 LSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999996 468899999999999999998654
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=96.04 E-value=0.0073 Score=42.00 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=35.7
Q ss_pred chHHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALEMQV 181 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq~QV 181 (208)
...|+.-+..|+.+||. +.++.-.+.|..|++||.+|+-++
T Consensus 14 ~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999995 558899999999999999998765
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.73 E-value=0.012 Score=42.51 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=33.4
Q ss_pred chHHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALE 178 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq 178 (208)
...|+.-+..|+++||. +.++.--+.|..|+|||..||
T Consensus 26 m~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp SSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 34788999999999985 468899999999999999997
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=94.88 E-value=0.028 Score=49.27 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=36.1
Q ss_pred chHHHHHHHhhcccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVP-GCRKQPFPVILEEATDYIAALEMQ 180 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVP-Gg~~m~~~~LL~Et~dYI~~Lq~Q 180 (208)
+..++..+..|+.||| +..+||-.++|++|++||..|+.+
T Consensus 24 r~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 24 RDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp HHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999 566999999999999999998764
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=92.25 E-value=0.092 Score=46.67 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=35.5
Q ss_pred chHHHHHHHhhcccCC----CCCCCChhhHHHHHHHHHHHHHH
Q 028489 141 LPAVQRKVRVLGRLVP----GCRKQPFPVILEEATDYIAALEM 179 (208)
Q Consensus 141 ~~~V~~k~r~LrrLVP----Gg~~m~~~~LL~Et~dYI~~Lq~ 179 (208)
+..++..+..|..||| ...++|-.++|+.|++||+.|+.
T Consensus 25 R~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 25 RDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 5689999999999999 66799999999999999999874
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=91.93 E-value=0.23 Score=37.90 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 028489 143 AVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALEMQ 180 (208)
Q Consensus 143 ~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq~Q 180 (208)
.|++=+..|+++||. ..++.--+.|.-|++||.+|+-.
T Consensus 39 ~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~ 79 (97)
T 4aya_A 39 NMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIA 79 (97)
T ss_dssp HHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 478888999999984 55789999999999999988743
No 19
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=55.59 E-value=4.1 Score=32.37 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHhh--cccCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 028489 147 KVRVL--GRLVPGCRKQPFPVILEEATDYIAALEMQVR 182 (208)
Q Consensus 147 k~r~L--rrLVPGg~~m~~~~LL~Et~dYI~~Lq~QV~ 182 (208)
|+..| ..++||-...-..++++++.+||..|.-||.
T Consensus 208 ~l~~l~~~~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 208 RLKKFDAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp HGGGSCCSEEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 55555 3678986665447899999999999999885
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=51.19 E-value=12 Score=30.08 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=33.7
Q ss_pred cCchHHHHHHHhhcccCCC----CCCCChhhHHHHHHHHHHHH
Q 028489 139 KSLPAVQRKVRVLGRLVPG----CRKQPFPVILEEATDYIAAL 177 (208)
Q Consensus 139 ~~~~~V~~k~r~LrrLVPG----g~~m~~~~LL~Et~dYI~~L 177 (208)
..++.|.=-...|+++||. -|.+.-+.||..|+|++..|
T Consensus 91 l~ePtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 91 LNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCSCCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4678999999999999996 34568899999999999877
No 21
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=43.74 E-value=10 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.3
Q ss_pred cccCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 028489 152 GRLVPGCRKQPFPVILEEATDYIAALEMQVRA 183 (208)
Q Consensus 152 rrLVPGg~~m~~~~LL~Et~dYI~~Lq~QV~v 183 (208)
..++||-...-..++|+++.+|+..++-||++
T Consensus 190 ~~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 46888865543578999999999999888753
No 22
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=43.08 E-value=18 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHhh----cccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 028489 146 RKVRVL----GRLVPGCRKQPFPVILEEATDYIAALEMQV 181 (208)
Q Consensus 146 ~k~r~L----rrLVPGg~~m~~~~LL~Et~dYI~~Lq~QV 181 (208)
+++..| ..++||-...-..++++++.+||..|+.+|
T Consensus 190 ~~l~~~~~~~~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~ 229 (232)
T 1a7t_A 190 DKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIEST 229 (232)
T ss_dssp HHHHHHCTTCSEEEESSSCCBCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEECCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 345554 568898766645689999999999998765
No 23
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=36.44 E-value=29 Score=20.54 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=13.7
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 028489 162 PFPVILEEATDYIAALEM 179 (208)
Q Consensus 162 ~~~~LL~Et~dYI~~Lq~ 179 (208)
.--.+|-||++|+...+-
T Consensus 3 ~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRER 20 (26)
T ss_dssp CSTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345678899999987664
No 24
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=36.29 E-value=45 Score=25.15 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=17.0
Q ss_pred CCCCCCC--ChhhHHHHHH-----H--HHHHHHHHHHHHHHHH
Q 028489 155 VPGCRKQ--PFPVILEEAT-----D--YIAALEMQVRAMTALA 188 (208)
Q Consensus 155 VPGg~~m--~~~~LL~Et~-----d--YI~~Lq~QV~vm~~L~ 188 (208)
-|||+.+ |+..+|..-- | -....+.|.+|.+.|-
T Consensus 17 WPGCe~~~ed~~~FlkHL~~eH~LddrS~AQcrvQ~qvVq~LE 59 (93)
T 4i1l_A 17 WPGCEKVFEEPEEFLKHCQADHLLDEKGKAQCLLQREVVQSLE 59 (93)
T ss_dssp -CCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHHHHHhhcccCCCcchHHHHHHHHHHHHHHH
Confidence 4999986 4555554321 1 1223345655555543
No 25
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=32.47 E-value=17 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=22.1
Q ss_pred HHHHhh----cccCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 028489 146 RKVRVL----GRLVPGCRKQPFPVILEEATDYIAALEMQVR 182 (208)
Q Consensus 146 ~k~r~L----rrLVPGg~~m~~~~LL~Et~dYI~~Lq~QV~ 182 (208)
+|+..+ ..++||-...-..+.++++.+|+..++-+|+
T Consensus 223 ~~l~~~~~~~~~v~pgHg~~~~~~~~~~~~~~l~~~~~~v~ 263 (265)
T 2y8b_A 223 KRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKTHKVRPV 263 (265)
T ss_dssp HHHHHHCTTCSEEEESSSCCBCTHHHHHHHHHHC-------
T ss_pred HHHHhhCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 455544 5688886665446899999999999998875
No 26
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=31.15 E-value=95 Score=23.23 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=37.1
Q ss_pred HHHHHHHhhcccC--CCCCCCChhhHHHHHH--------HHHHHHHH------HHHHHHHHHHHHhcC
Q 028489 143 AVQRKVRVLGRLV--PGCRKQPFPVILEEAT--------DYIAALEM------QVRAMTALAELLSVG 194 (208)
Q Consensus 143 ~V~~k~r~LrrLV--PGg~~m~~~~LL~Et~--------dYI~~Lq~------QV~vm~~L~~~l~~~ 194 (208)
.+.+|+..|...+ ||+.++...+|=+... .||-.++. -+.+|..|+++|.-.
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~ 72 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIK 72 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCC
Confidence 4778999998877 3445676666655543 89999985 267889999888643
No 27
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=29.38 E-value=1.1e+02 Score=23.08 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHHHhhcccC-CC-CCCCChhhHHHHH--------HHHHHHHHH------HHHHHHHHHHHHhcC
Q 028489 143 AVQRKVRVLGRLV-PG-CRKQPFPVILEEA--------TDYIAALEM------QVRAMTALAELLSVG 194 (208)
Q Consensus 143 ~V~~k~r~LrrLV-PG-g~~m~~~~LL~Et--------~dYI~~Lq~------QV~vm~~L~~~l~~~ 194 (208)
.+.+|++.|+.-+ |+ +.++...+|-+.. ..||-.++. -+.+|..|+++|.-.
T Consensus 7 ~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~ 74 (135)
T 3r1f_A 7 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIK 74 (135)
T ss_dssp CHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCC
Confidence 4778999999865 33 3457666665554 389999985 267899999998754
No 28
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.58 E-value=1.2e+02 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 028489 172 DYIAALEMQVRAMTALAELLSV 193 (208)
Q Consensus 172 dYI~~Lq~QV~vm~~L~~~l~~ 193 (208)
.||..|+.+|.-|..+...+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5899999999888776665543
No 29
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=21.14 E-value=1.1e+02 Score=23.15 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=32.8
Q ss_pred cCchHHHHHHHhhcc----cCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028489 139 KSLPAVQRKVRVLGR----LVPGCRKQPFPVILEEATDYIAALEMQVRAMTAL 187 (208)
Q Consensus 139 ~~~~~V~~k~r~Lrr----LVPGg~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L 187 (208)
.+...|+.+++.|.. ..||+...+..++|.|..+-. =+||-.+++.+
T Consensus 8 ~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~c--k~~qp~i~kL~ 58 (111)
T 1wr6_A 8 HTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQC--ENKRRTLFKLA 58 (111)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH--HHHHHHHHHHH
Confidence 456788888887655 558888777778888885544 46666666543
Done!