BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028490
MNAAISMRSRKGLTGTVAADAGELKLRAYVIAGPALNASDLSFSVEKPGSFLVDFDVPQK
NVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYS
YVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGK
CKVSASFRLGEGLYMPTLTAESSWDFEM

High Scoring Gene Products

Symbol, full name Information P value
AT1G45170 protein from Arabidopsis thaliana 3.6e-50
AT5G42960 protein from Arabidopsis thaliana 2.3e-48
OEP24
Outer envelope pore protein 24, chloroplastic
protein from Pisum sativum 2.3e-46

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028490
        (208 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2028210 - symbol:AT1G45170 "AT1G45170" species...   522  3.6e-50   1
TAIR|locus:2160051 - symbol:AT5G42960 "AT5G42960" species...   505  2.3e-48   1
UNIPROTKB|O49929 - symbol:OEP24 "Outer envelope pore prot...   486  2.3e-46   1


>TAIR|locus:2028210 [details] [associations]
            symbol:AT1G45170 "AT1G45170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0045036 "protein targeting to
            chloroplast" evidence=RCA] [GO:0009536 "plastid" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0015288 GO:GO:0046930
            EMBL:AC007915 GO:GO:0022843 GO:GO:0031359 GO:GO:0034426
            EMBL:BT025535 EMBL:AK118473 IPI:IPI00540316 IPI:IPI00846637
            PIR:A96510 RefSeq:NP_001077680.1 RefSeq:NP_175131.3
            UniGene:At.38727 IntAct:Q1H5C9 STRING:Q1H5C9 PRIDE:Q1H5C9
            DNASU:841085 EnsemblPlants:AT1G45170.1 GeneID:841085
            KEGG:ath:AT1G45170 TAIR:At1g45170 eggNOG:NOG331228
            HOGENOM:HOG000015146 InParanoid:Q1H5C9 OMA:SANYMVG PhylomeDB:Q1H5C9
            ProtClustDB:CLSN2689917 Genevestigator:Q1H5C9 Uniprot:Q1H5C9
        Length = 213

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 100/204 (49%), Positives = 141/204 (69%)

Query:    10 RKGLTGTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRF 64
             + G   ++  +AG  KLRA +     +AGP+ N   LS +VEKPG F++D++VP+K+VRF
Sbjct:    14 KSGSVASLTFNAGNAKLRATMTDASFVAGPSFNG--LSLAVEKPGFFIIDYNVPKKDVRF 71

Query:    65 QFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHR 124
             QFMNT RI EK L +TY HM G+NRTI+DG+ ++DP NK+SANY++ ++N KL+Y+YVH 
Sbjct:    72 QFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHG 131

Query:   125 GMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVS 184
             G+ATFEPCYD  KN W+ A+S  ++ GD ++A+Y  S K+L L W    +    G  KV 
Sbjct:   132 GIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEW--SNNSKSTGSFKVC 189

Query:   185 ASFRLGEGLYMPTLTAESSWDFEM 208
             AS  L E L  P LTAE++W+ E+
Sbjct:   190 ASMNLAEELKPPKLTAETTWNLEL 213


>TAIR|locus:2160051 [details] [associations]
            symbol:AT5G42960 "AT5G42960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
            EMBL:AB008264 GO:GO:0015288 GO:GO:0046930 GO:GO:0022843
            GO:GO:0031359 GO:GO:0034426 eggNOG:NOG331228 HOGENOM:HOG000015146
            ProtClustDB:CLSN2689917 EMBL:AY054647 EMBL:BT001163 EMBL:DQ487722
            EMBL:DQ653343 IPI:IPI00532309 RefSeq:NP_568618.1 UniGene:At.55328
            UniGene:At.6529 PRIDE:Q8H0Y1 DNASU:834310 EnsemblPlants:AT5G42960.1
            GeneID:834310 KEGG:ath:AT5G42960 TAIR:At5g42960 InParanoid:Q8H0Y1
            OMA:RFQFMNS PhylomeDB:Q8H0Y1 Genevestigator:Q8H0Y1 Uniprot:Q8H0Y1
        Length = 213

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/199 (48%), Positives = 140/199 (70%)

Query:    15 GTVAADAGELKLRAYV-----IAGPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNT 69
             G++A +AG++KLRA +     +AGP L    L+ +VEKPGSF+V+++VP+K+VRFQFMNT
Sbjct:    20 GSLAFNAGDIKLRATMTDATLVAGPTLTG--LALAVEKPGSFIVEYNVPKKDVRFQFMNT 77

Query:    70 ARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATF 129
              RI EK L +TY H   +NRTI+DG+L++D  NK+SAN+++ + N K++Y+Y H G+ATF
Sbjct:    78 VRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATF 137

Query:   130 EPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRL 189
             EPCYD  KN+W+ AVS+  + GD +RA+Y  S K+L + W      N+    KV AS  L
Sbjct:   138 EPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN---NKASGFKVCASVNL 194

Query:   190 GEGLYMPTLTAESSWDFEM 208
              + L  P LTAE++W+ EM
Sbjct:   195 ADELKTPKLTAETTWNLEM 213


>UNIPROTKB|O49929 [details] [associations]
            symbol:OEP24 "Outer envelope pore protein 24,
            chloroplastic" species:3888 "Pisum sativum" [GO:0015288 "porin
            activity" evidence=IDA] [GO:0022843 "voltage-gated cation channel
            activity" evidence=IDA] [GO:0031359 "integral to chloroplast outer
            membrane" evidence=IDA] [GO:0034426 "etioplast membrane"
            evidence=IDA] [GO:0034765 "regulation of ion transmembrane
            transport" evidence=IDA] [GO:0046930 "pore complex" evidence=IDA]
            GO:GO:0015288 GO:GO:0046930 GO:GO:0022843 GO:GO:0031359
            GO:GO:0034426 EMBL:AJ001009 PIR:T06474 TCDB:1.B.28.1.1
            Uniprot:O49929
        Length = 213

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 101/196 (51%), Positives = 133/196 (67%)

Query:    16 TVAADAGELKLRAYVIAGPALNASDLS---FSVEKPGSFLVDFDVPQKNVRFQFMNTARI 72
             TVA +AG++KLRA +      N+  L+    +VEKPGSF VD++VP+K+ RFQFMNT R+
Sbjct:    20 TVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFSVDYNVPKKDFRFQFMNTVRV 79

Query:    73 LEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYVLDSRNLKLRYSYVHRGMATFEPC 132
              EK L + Y H  G+NRTILDGTL+ DP+NK+SANY ++S N KL+YSY H+G+ T EP 
Sbjct:    80 AEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVESGNCKLKYSYNHKGLTTIEPT 139

Query:   133 YDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEG 192
             YD  KNSW+ AVS  V+  D ++ASY  S KVL L W  + S  + G  KV AS  L E 
Sbjct:   140 YDVAKNSWDFAVSGKVYGDDSLKASYQTSSKVLGLEWT-RNS-KQTGCFKVVASVNLAEE 197

Query:   193 LYMPTLTAESSWDFEM 208
               +P L+ ES+ +FEM
Sbjct:   198 KKIPKLSVESTLNFEM 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      208       208   0.00077  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  175 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.83u 0.12s 17.95t   Elapsed:  00:00:01
  Total cpu time:  17.83u 0.12s 17.95t   Elapsed:  00:00:01
  Start:  Mon May 20 18:18:33 2013   End:  Mon May 20 18:18:34 2013

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