Query 028490
Match_columns 208
No_of_seqs 29 out of 31
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 20:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f95_A Beta-glucosidase; beta- 72.3 6.4 0.00022 32.7 5.6 77 52-141 49-132 (193)
2 4epa_A Pesticin receptor; TONB 66.3 65 0.0022 27.9 11.7 60 131-208 406-465 (655)
3 3efm_A FAUA, ferric alcaligin 40.9 1.2E+02 0.0041 26.3 8.3 50 136-208 464-513 (707)
4 3t24_A Porin; beta-barrel, cha 35.7 2.2E+02 0.0075 25.3 9.4 28 134-162 253-280 (401)
5 3szv_A Pyroglutatmate porin OP 31.3 91 0.0031 27.8 6.2 28 134-162 254-281 (401)
6 4hci_A Cupredoxin 1; structura 24.7 66 0.0023 22.3 3.3 14 15-28 28-42 (100)
7 3ddy_A Lumazine protein, LUMP; 23.7 1.4E+02 0.0049 24.4 5.6 29 32-61 38-68 (186)
8 3emn_X Voltage-dependent anion 22.7 3.6E+02 0.012 23.1 18.3 58 137-198 228-287 (295)
9 4aui_A Porin (PORB); membrane 22.0 3.2E+02 0.011 22.4 7.5 55 103-158 210-264 (327)
10 3sy7_A Porin D; beta-barrel, c 21.6 3.4E+02 0.011 24.4 8.1 28 134-162 248-275 (428)
11 2p8g_A PAD, phenolic acid deca 21.3 1.3E+02 0.0044 25.0 4.8 49 52-105 29-82 (162)
12 3vy8_X Outer membrane protein; 20.1 4E+02 0.014 23.0 8.1 91 104-204 236-332 (355)
No 1
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=72.25 E-value=6.4 Score=32.73 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=51.9
Q ss_pred EEeeeCCCCCeEEEEeeeeeecceeeeEEEeeecCCceeEEeeEEEec------CCCceeEEEEeeCCCeeEEEEEEeCC
Q 028490 52 LVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLD------PTNKISANYVLDSRNLKLRYSYVHRG 125 (208)
Q Consensus 52 ~iDydv~~~d~rFQFmnt~~V~~K~lnlTYtH~~~~nrT~lDgtl~~D------~aNKls~~y~~~s~n~klKYsYvH~g 125 (208)
-+|+++.+-.-+|.|-.+... .+.+.+.-+ -| +.+++++|+|| |...+++...|+..+|.-.
T Consensus 49 ~vD~~~QEDAr~~~w~G~~~a---~~~~~~~~~-~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~C~~~------- 116 (193)
T 3f95_A 49 SVNLSYQEDGRGFNWRAQAAL---SLSYLEPTP-LD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESNCLRD------- 116 (193)
T ss_dssp EECSSSTTCEEEEEESSSEEE---EEEEEEEEE-CC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSCEEEE-------
T ss_pred eechhhccceeEeEEcCCCce---EEEEecCCC-cC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCCccce-------
Confidence 489999998899999765331 333333322 35 77888889988 9999999999997777322
Q ss_pred eeeeeeecc-cCcceee
Q 028490 126 MATFEPCYD-FGKNSWE 141 (208)
Q Consensus 126 ~tt~EP~yD-~~~nsWd 141 (208)
.-|.+... +..+.|.
T Consensus 117 -vdit~~L~~~~~g~W~ 132 (193)
T 3f95_A 117 -IDFSSFSQLMADKSWH 132 (193)
T ss_dssp -EEGGGTHHHHTTCCCE
T ss_pred -eehhHhhhhccCCCCE
Confidence 33333333 4566675
No 2
>4epa_A Pesticin receptor; TONB dependent transporter, iron import, metal transport; HET: LDA; 3.20A {Yersinia pestis}
Probab=66.31 E-value=65 Score=27.88 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=39.9
Q ss_pred eecccCcceeeeEEEEEecCCCeEEEEEecCceeEEEEEeeCCCCCCCCceEEEEEEecCCCCCCCeeEEEceecccC
Q 028490 131 PCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM 208 (208)
Q Consensus 131 P~yD~~~nsWdfavs~kv~~~d~vratY~~s~k~lgleWsr~s~~~~~G~fKv~a~~~L~d~~K~pkL~aEktWn~e~ 208 (208)
...+...-+|.+++++++.++..++++|-.+-+. |...... ....-.|.|-.|++|++|+
T Consensus 406 ~~~~~~~~~p~~~~~y~~~~~~~l~~s~~~~~~~--------p~~~~~~----------~~~~~n~~L~pe~~~~~e~ 465 (655)
T 4epa_A 406 GKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYKP--------SGYNIVP----------TAGLDAKPFVAEKSINYEL 465 (655)
T ss_dssp EEEEEEEEEEEEEEEEEEETTEEEEEEEECCEEC--------CBCCSSC----------CSSSCCCCBCCEEEEEEEE
T ss_pred ccccccccceeEEEEEEeCCCeEEEEEEeeeEcC--------CccCCCC----------cCccccCCcCceeeEEEEE
Confidence 3445555678999999999999999999876442 2221000 1123457788899988874
No 3
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein, membrane receptor, membrane transporter, membrane, TONB box; 2.33A {Bordetella pertussis}
Probab=40.94 E-value=1.2e+02 Score=26.34 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=33.7
Q ss_pred CcceeeeEEEEEecCCCeEEEEEecCceeEEEEEeeCCCCCCCCceEEEEEEecCCCCCCCeeEEEceecccC
Q 028490 136 GKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGLYMPTLTAESSWDFEM 208 (208)
Q Consensus 136 ~~nsWdfavs~kv~~~d~vratY~~s~k~lgleWsr~s~~~~~G~fKv~a~~~L~d~~K~pkL~aEktWn~e~ 208 (208)
..=+|.+++++++.++-.++++|-.+-+ .|.. .+.-.|.|-.|++|++|+
T Consensus 464 ~~~~P~~~l~y~~~~~~~l~asy~~~~~--------~p~~---------------~~~~n~~L~pE~~~~~El 513 (707)
T 3efm_A 464 NQFTPYAGLTYDINDTYTAYASYTEIFQ--------PQNA---------------RDTSGGILPPIKSKSYEL 513 (707)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEEEEEEE--------CCCC---------------BCSSSCBCCCEEEEEEEE
T ss_pred ccccceEEEEEEcCCCeEEEEEeeEEec--------CCCc---------------ccCCCCcCCCcccceEEE
Confidence 3446788999999999999999876432 1211 123456777888888874
No 4
>3t24_A Porin; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 2.40A {Pseudomonas aeruginosa}
Probab=35.73 E-value=2.2e+02 Score=25.33 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=24.2
Q ss_pred ccCcceeeeEEEEEecCCCeEEEEEecCc
Q 028490 134 DFGKNSWELAVSKTVFDGDVIRASYDKSR 162 (208)
Q Consensus 134 D~~~nsWdfavs~kv~~~d~vratY~~s~ 162 (208)
++.+++|.+.++.++ +++++.+.||..+
T Consensus 253 ~iDn~~~s~~~~~~~-~~ht~~~~yq~~~ 280 (401)
T 3t24_A 253 NVDNKALNAMFTYSL-GYHAFGVGYQKMS 280 (401)
T ss_dssp CCEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred ccchhhhceEEEEec-cCcccchhheecc
Confidence 677889999999997 8899999999743
No 5
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas aeruginosa} PDB: 2y0k_A*
Probab=31.31 E-value=91 Score=27.82 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=24.0
Q ss_pred ccCcceeeeEEEEEecCCCeEEEEEecCc
Q 028490 134 DFGKNSWELAVSKTVFDGDVIRASYDKSR 162 (208)
Q Consensus 134 D~~~nsWdfavs~kv~~~d~vratY~~s~ 162 (208)
+..+++|.+.++.++ +++++.+.||..+
T Consensus 254 ~iDn~~~s~~~~~~~-g~~t~~~~yq~~~ 281 (401)
T 3szv_A 254 ELDNRAFGALFSLRL-GAHAVAAGYQRIS 281 (401)
T ss_dssp CCEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred cCCHHHHhheeEEEE-ecEEEEEEEEEec
Confidence 567889999999987 7889999999754
No 6
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=24.67 E-value=66 Score=22.25 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=9.6
Q ss_pred EEEEEecCc-eeEEE
Q 028490 15 GTVAADAGE-LKLRA 28 (208)
Q Consensus 15 atv~~~aGd-lklrA 28 (208)
++|++++|| ++|.-
T Consensus 28 ~~i~v~~G~tV~~~~ 42 (100)
T 4hci_A 28 NVITIPINESTTLLL 42 (100)
T ss_dssp SEEEECTTSCEEEEE
T ss_pred CEEEECCCCEEEEEE
Confidence 467788887 66653
No 7
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=23.73 E-value=1.4e+02 Score=24.39 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=23.2
Q ss_pred eCCccCcCccEEEEe--cCceEEEeeeCCCCC
Q 028490 32 AGPALNASDLSFSVE--KPGSFLVDFDVPQKN 61 (208)
Q Consensus 32 ~GpsL~~~GLsL~vE--KPGsF~iDydv~~~d 61 (208)
-|.|..++|..|+|. .++.|.+|- +++-.
T Consensus 38 ~GdSIAvnGvCLTV~~~~~~~f~vdv-~ETl~ 68 (186)
T 3ddy_A 38 VDTVMLVNGCSNTVVRILGDMVYFDI-DQALG 68 (186)
T ss_dssp TTCEEEETTEEEEEEEEETTEEEEEE-CTTTT
T ss_pred CCCeEEEeeEEEEEEEEcCCEEEEEh-HHhhh
Confidence 478877779999998 588999998 76643
No 8
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=22.69 E-value=3.6e+02 Score=23.06 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=39.4
Q ss_pred cceeeeEEEEEecCCCeEEEEEecCceeE-EEEEeeCCCCCCCCceEEEEEEecCC-CCCCCee
Q 028490 137 KNSWELAVSKTVFDGDVIRASYDKSRKVL-DLGWLWKPSFNRDGKCKVSASFRLGE-GLYMPTL 198 (208)
Q Consensus 137 ~nsWdfavs~kv~~~d~vratY~~s~k~l-gleWsr~s~~~~~G~fKv~a~~~L~d-~~K~pkL 198 (208)
.++..++..+.++.+-.+||--+...++- .++..-.|.. .+-+++.|+-.. +.+.+|+
T Consensus 228 ~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v----~ltls~~iD~~~l~~~~~K~ 287 (295)
T 3emn_X 228 NTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGI----KLTLSALLDGKNVNAGGHKL 287 (295)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTE----EEEEEEEEESSCTTTSCCEE
T ss_pred CcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCc----EEEEEEEECccccCCCCCcE
Confidence 56677888888888888999998877743 3444444555 677777777632 2356774
No 9
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=22.03 E-value=3.2e+02 Score=22.43 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=24.7
Q ss_pred ceeEEEEeeCCCeeEEEEEEeCCeeeeeeecccCcceeeeEEEEEecCCCeEEEEE
Q 028490 103 KISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASY 158 (208)
Q Consensus 103 Kls~~y~~~s~n~klKYsYvH~g~tt~EP~yD~~~nsWdfavs~kv~~~d~vratY 158 (208)
.+.+.|.++.-...+.|.|.+...+.-..........|...+.+++. .-+++++|
T Consensus 210 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~g-~~~~~~~~ 264 (327)
T 4aui_A 210 RLVGGYDHDALYASVAVQQQDAKLTWRDDNSHNSQTEVATTVAYRFG-NVTPRVSY 264 (327)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEECBT-TBCCEEEE
T ss_pred eeeeeEEecceEEEEEEEEeeeeeeecccccccccceeeeeeeEEee-eeeEEEEE
Confidence 35667777654455555554432111111111223345555555442 33445554
No 10
>3sy7_A Porin D; beta-barrel, channel, outer membrane, membrane protein; HET: C8E; 2.15A {Pseudomonas aeruginosa} PDB: 2odj_A*
Probab=21.64 E-value=3.4e+02 Score=24.45 Aligned_cols=28 Identities=29% Similarity=0.607 Sum_probs=23.6
Q ss_pred ccCcceeeeEEEEEecCCCeEEEEEecCc
Q 028490 134 DFGKNSWELAVSKTVFDGDVIRASYDKSR 162 (208)
Q Consensus 134 D~~~nsWdfavs~kv~~~d~vratY~~s~ 162 (208)
+.-.++|.++++.++ +++++.+.||..+
T Consensus 248 ~iDn~~~~~~~~~~~-g~ht~~~~yq~~~ 275 (428)
T 3sy7_A 248 DISNTTWSLAAAYTL-DAHTFTLAYQKVH 275 (428)
T ss_dssp CCEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred CcChHHHHhhheeEE-CCEEEEEEEEEcc
Confidence 455789999999996 8899999999754
No 11
>2p8g_A PAD, phenolic acid decarboxylase; 2635953, phenolic acid decarboxylase (PAD), structural genom joint center for structural genomics, JCSG; 1.36A {Bacillus subtilis} PDB: 3nad_A
Probab=21.27 E-value=1.3e+02 Score=25.01 Aligned_cols=49 Identities=29% Similarity=0.366 Sum_probs=36.4
Q ss_pred EEeeeCCC-----CCeEEEEeeeeeecceeeeEEEeeecCCceeEEeeEEEecCCCcee
Q 028490 52 LVDFDVPQ-----KNVRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKIS 105 (208)
Q Consensus 52 ~iDydv~~-----~d~rFQFmnt~~V~~K~lnlTYtH~~~~nrT~lDgtl~~D~aNKls 105 (208)
.|||..|. +=+++|=.+-++|.+.--+++.+-++| | +++|++|+.+|.=
T Consensus 29 tidYrIH~G~vaGRwv~dQ~a~~v~l~~~vykisW~EpTG---T--~VSl~~~~~~k~~ 82 (162)
T 2p8g_A 29 TIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKVSWTEPTG---T--DVSLNFMPNEKRM 82 (162)
T ss_dssp EEEEEECSSTTTTCEEEEEECEEEEEETTEEEEEEECTTS---C--EEEEEEEGGGTEE
T ss_pred EEEEEEecccccCceecceEEEEEEecCCcEEEEeecCCC---C--EEEEEEeccccEE
Confidence 38999984 448899999999977555555555433 3 6799999998753
No 12
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=20.12 E-value=4e+02 Score=23.04 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=50.9
Q ss_pred eeEEEEeeCCCeeEEEEEEeCCeeee--e--eecccCcceeeeEEEEEecCCCeEEEEEecC-c-eeEEEEEeeCCCCCC
Q 028490 104 ISANYVLDSRNLKLRYSYVHRGMATF--E--PCYDFGKNSWELAVSKTVFDGDVIRASYDKS-R-KVLDLGWLWKPSFNR 177 (208)
Q Consensus 104 ls~~y~~~s~n~klKYsYvH~g~tt~--E--P~yD~~~nsWdfavs~kv~~~d~vratY~~s-~-k~lgleWsr~s~~~~ 177 (208)
+.+.|.++ +.+|-=.|.+....+. - ...+-..+.|.++++++|.. -+++++|... . |..+-.. +...
T Consensus 236 lga~Yd~~--~~~laa~Y~~~~~~~~~~~~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~--~~~~-- 308 (355)
T 3vy8_X 236 VVAGYDAN--DLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKD--ANYQ-- 308 (355)
T ss_dssp EEEEEEET--TEEEEEEEEEEEEEECSSSTTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEE--GGGC--
T ss_pred EEEEEEec--CEEEEEEEEEeccccccccccccccceeeEEEEEEEEEcCC-eEEEEEEEEecccccccccc--CCCc--
Confidence 67788875 6666655554421110 0 02233567999999999965 8999999876 2 2111110 1101
Q ss_pred CCceEEEEEEecCCCCCCCeeEEEcee
Q 028490 178 DGKCKVSASFRLGEGLYMPTLTAESSW 204 (208)
Q Consensus 178 ~G~fKv~a~~~L~d~~K~pkL~aEktW 204 (208)
.-.+-|.+.-+| +|.-++.+|=.|
T Consensus 309 ~~~~~vG~~Y~l---sKrt~~Ya~y~~ 332 (355)
T 3vy8_X 309 YDQVIVGADYDF---SKRTSALVSAGW 332 (355)
T ss_dssp EEEEEEEEEEES---SSSEEEEEEEEE
T ss_pred ceEEEEEEEEEc---CCCeEEEEEEEE
Confidence 124566666666 455556666444
Done!