Query 028490
Match_columns 208
No_of_seqs 29 out of 31
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 20:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028490.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028490hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fgqx1 f.4.3.1 (X:3-332) Pori 55.2 29 0.0021 26.6 8.4 85 103-201 205-289 (330)
2 d1cb8a2 b.24.1.1 (A:600-700) C 46.7 4.3 0.00031 28.5 1.9 28 29-56 24-51 (101)
3 d2gc9a1 b.60.1.6 (A:1-178) P-c 42.6 19 0.0014 28.3 5.4 53 52-109 35-92 (178)
4 d1h3ga1 b.1.18.2 (A:3-95) Cycl 35.7 35 0.0026 23.5 5.4 58 6-65 24-85 (93)
5 d3b7sa2 b.98.1.1 (A:1-208) Leu 32.7 80 0.0058 22.6 7.7 32 5-36 40-71 (208)
6 d1ukga_ b.29.1.1 (A:) Legume l 31.8 36 0.0026 25.5 5.3 38 152-193 170-207 (241)
7 d1kzla1 b.43.4.3 (A:1-92) Ribo 26.6 18 0.0013 24.4 2.4 28 30-57 36-65 (92)
8 d1qjpa_ f.4.1.1 (A:) Outer mem 25.8 67 0.0049 21.5 5.5 10 138-147 160-169 (171)
9 d1y4wa1 b.29.1.19 (A:373-536) 25.5 1.1E+02 0.008 21.8 8.2 49 127-175 34-84 (164)
10 g1qmo.1 b.29.1.1 (A:,E:) Legum 24.6 55 0.004 24.4 5.2 38 152-193 160-197 (230)
11 d2o14a1 b.18.1.32 (A:14-159) H 24.5 61 0.0045 23.4 5.3 68 15-94 67-136 (146)
12 d1kzla2 b.43.4.3 (A:93-202) Ri 23.5 60 0.0044 22.6 4.9 24 32-55 44-69 (110)
13 d1i8da1 b.43.4.3 (A:1-93) Ribo 23.2 70 0.0051 21.4 5.1 27 31-57 37-65 (93)
No 1
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=55.21 E-value=29 Score=26.55 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=50.6
Q ss_pred ceeEEEEeeCCCeeEEEEEEeCCeeeeeeecccCcceeeeEEEEEecCCCeEEEEEecCceeEEEEEeeCCCCCCCCceE
Q 028490 103 KISANYVLDSRNLKLRYSYVHRGMATFEPCYDFGKNSWELAVSKTVFDGDVIRASYDKSRKVLDLGWLWKPSFNRDGKCK 182 (208)
Q Consensus 103 Kls~~y~~~s~n~klKYsYvH~g~tt~EP~yD~~~nsWdfavs~kv~~~d~vratY~~s~k~lgleWsr~s~~~~~G~fK 182 (208)
.+.+.|.|+ ..+|.-.|.|... .-...=+...+.|.+++.+.+.+...+++.|..... +...+..-.+-
T Consensus 205 ~~ga~Y~~g--~~~l~~~y~~~~~-~~~~~~~~~~~~~~~~a~y~~~~~~~~~~~y~~~~~--------~~~~~~~~~~~ 273 (330)
T d2fgqx1 205 TLGASYNFG--VAKLSGLLQQTKF-KRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQ--------KAIDSKAHQIT 273 (330)
T ss_dssp EEEEEEECS--SCEEEEEEEEEEE-EETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEE--------GGGTEEEEEEE
T ss_pred EEEEEEEee--eEEEEEEEEEeee-ccccCceEEEeEEEEEEEEEecccEEEEEEEEEEec--------ccCCCCceEEE
Confidence 578899886 4566655655421 111222445578999999999888899999975322 12221011366
Q ss_pred EEEEEecCCCCCCCeeEEE
Q 028490 183 VSASFRLGEGLYMPTLTAE 201 (208)
Q Consensus 183 v~a~~~L~d~~K~pkL~aE 201 (208)
|.+.-+| +|...|-+|
T Consensus 274 lg~~Y~l---SKrT~lYa~ 289 (330)
T d2fgqx1 274 LGYVHNL---SKRTALYGN 289 (330)
T ss_dssp EEEEEES---SSSEEEEEE
T ss_pred EEEEEEc---cCchHHhhh
Confidence 6666666 444555544
No 2
>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=46.71 E-value=4.3 Score=28.47 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=21.8
Q ss_pred EEeeCCccCcCccEEEEecCceEEEeee
Q 028490 29 YVIAGPALNASDLSFSVEKPGSFLVDFD 56 (208)
Q Consensus 29 sf~~GpsL~~~GLsL~vEKPGsF~iDyd 56 (208)
.|-.+-++.++||.+.+.+|+++|+..+
T Consensus 24 ~F~~~g~~~~~gl~v~~d~p~~vmi~~~ 51 (101)
T d1cb8a2 24 IFYTAGKLSVAGIEIETDKPCAVLIKHI 51 (101)
T ss_dssp EESSSEEEEETTEEEEESSCEEEEEECT
T ss_pred EEEcCCccccCCeEEEcCCceEEEEEEC
Confidence 3554445667799999999999999765
No 3
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc {Lactobacillus plantarum [TaxId: 1590]}
Probab=42.61 E-value=19 Score=28.31 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=42.6
Q ss_pred EEeeeCCCCC-----eEEEEeeeeeecceeeeEEEeeecCCceeEEeeEEEecCCCceeEEEE
Q 028490 52 LVDFDVPQKN-----VRFQFMNTARILEKQLYMTYTHMTGENRTILDGTLLLDPTNKISANYV 109 (208)
Q Consensus 52 ~iDydv~~~d-----~rFQFmnt~~V~~K~lnlTYtH~~~~nrT~lDgtl~~D~aNKls~~y~ 109 (208)
.|||-.|..- ++.|=-+-+++.+.-.+++.+-++|- +++|++|+.||.=-...
T Consensus 35 tIdYrIHgG~vaGRwv~dq~~~~~~~~~~l~kisW~EpTGT-----~VSl~~~i~~k~~hg~I 92 (178)
T d2gc9a1 35 TVDYRIHGGMVAGRWVTDQKADIVMLTEGIYKISWTEPTGT-----DVALDFMPNEKKLHGTI 92 (178)
T ss_dssp EEEEEECSSTTTTCEEEEEECEEEEEETTEEEEEEECTTSC-----EEEEEEEGGGTEEEEEE
T ss_pred EEEEEEecCcccCceecceEEEEEEEcCCeEEEEeecCCCC-----EEEEEEeccccEEEEEE
Confidence 5899999887 99999999999888888887776553 67999999998643333
No 4
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=35.67 E-value=35 Score=23.52 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=30.8
Q ss_pred eeeeccceEEEEEEecCceeEEEE-EeeCCccCcCccEEEEe---cCceEEEeeeCCCCCeEEE
Q 028490 6 SMRSRKGLTGTVAADAGELKLRAY-VIAGPALNASDLSFSVE---KPGSFLVDFDVPQKNVRFQ 65 (208)
Q Consensus 6 ~~~~~~~~~atv~~~aGdlklrAs-f~~GpsL~~~GLsL~vE---KPGsF~iDydv~~~d~rFQ 65 (208)
-+.|..-+-.++.++..+|+|... -+.-|--= =|.|-+. |||.|.|++.-.++..+|.
T Consensus 24 lvyG~nIa~~~~~i~~~gV~l~~v~~~eNpNYL--Fv~L~i~~~a~~g~~~i~f~~~~~~~~~~ 85 (93)
T d1h3ga1 24 MVHGRDIGRMEAALDYPGVRLVSTTRVPNANYL--FVDLEIGPEAQPGSFDIVFKGDGRSERYR 85 (93)
T ss_dssp EEESTTGGGCEEEECBTTEEEEEEEECSSTTEE--EEEEEECTTCCSEEEEEEEEETTEEEEEE
T ss_pred EEEcCCcccCceEEeCCCeEEEEeEcCCCCCEE--EEEEEeCCCCCCcEEEEEEecCCeEEEEE
Confidence 345555555677777778888776 11111111 1334442 6777777775444443333
No 5
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.70 E-value=80 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=16.8
Q ss_pred eeeeeccceEEEEEEecCceeEEEEEeeCCcc
Q 028490 5 ISMRSRKGLTGTVAADAGELKLRAYVIAGPAL 36 (208)
Q Consensus 5 ~~~~~~~~~~atv~~~aGdlklrAsf~~GpsL 36 (208)
|.++..+..+-.|.+++-++.+....++|..+
T Consensus 40 I~~~~~~~~~~~i~Ld~~~l~I~~v~~~g~~~ 71 (208)
T d3b7sa2 40 LTVQSQEDNLRSLVLDTKDLTIEKVVINGQEV 71 (208)
T ss_dssp EEEEECSTTEEEEEEEESSCEEEEEEETTEEC
T ss_pred EEEEECcCCccEeeeeccCCEEEEEEECCccc
Confidence 44444444345566666666665545554433
No 6
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus angolensis) [TaxId: 182271]}
Probab=31.83 E-value=36 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.0
Q ss_pred CeEEEEEecCceeEEEEEeeCCCCCCCCceEEEEEEecCCCC
Q 028490 152 DVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGL 193 (208)
Q Consensus 152 d~vratY~~s~k~lgleWsr~s~~~~~G~fKv~a~~~L~d~~ 193 (208)
..++..|+...|.|.+.+.-+. ...+++++.++|++..
T Consensus 170 ~~v~I~Yd~~~~~L~v~~~~~~----~~~~~l~~~vdL~~~l 207 (241)
T d1ukga_ 170 LNVLVTFNPSTRNLDVVATYSD----GTRYEVSYEVDVRSVL 207 (241)
T ss_dssp EEEEEEEETTTTEEEEEEEETT----CCEEEEEEECCGGGTS
T ss_pred EEEEEEEeCCCcEEEEEEccCC----CCceEEEEEEehHHhC
Confidence 4689999999999999997653 3478999999986554
No 7
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=26.65 E-value=18 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=20.2
Q ss_pred EeeCCccCcCccEEEEe--cCceEEEeeeC
Q 028490 30 VIAGPALNASDLSFSVE--KPGSFLVDFDV 57 (208)
Q Consensus 30 f~~GpsL~~~GLsL~vE--KPGsF~iDydv 57 (208)
++-|.|..++|++|+|. .+..|.+|.=+
T Consensus 36 i~~g~SIavnGvcLTV~~~~~~~f~~~lip 65 (92)
T d1kzla1 36 CHTGDSIAVNGTCLTVTDFDRYHFTVGIAP 65 (92)
T ss_dssp CCTTCEEEETTEEEEEEEECSSEEEEEECH
T ss_pred cccCceEEeccEEEEeEeeccceEEEEEEh
Confidence 45688888889999998 45566666543
No 8
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=25.83 E-value=67 Score=21.54 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=4.3
Q ss_pred ceeeeEEEEE
Q 028490 138 NSWELAVSKT 147 (208)
Q Consensus 138 nsWdfavs~k 147 (208)
++|.++|++|
T Consensus 160 ~~~~~G~~Y~ 169 (171)
T d1qjpa_ 160 GMLSLGVSYR 169 (171)
T ss_dssp CEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 3444444444
No 9
>d1y4wa1 b.29.1.19 (A:373-536) Exo-inulinase {Aspergillus awamori [TaxId: 105351]}
Probab=25.54 E-value=1.1e+02 Score=21.84 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=33.8
Q ss_pred eeeeeecccCcceeeeEEEEEec--CCCeEEEEEecCceeEEEEEeeCCCC
Q 028490 127 ATFEPCYDFGKNSWELAVSKTVF--DGDVIRASYDKSRKVLDLGWLWKPSF 175 (208)
Q Consensus 127 tt~EP~yD~~~nsWdfavs~kv~--~~d~vratY~~s~k~lgleWsr~s~~ 175 (208)
..||=.++....+=.|++.=+.. +.+.++..|+.....|-|+.++.+..
T Consensus 34 ~el~l~~~~~~~a~~fgl~lr~s~d~~e~t~i~yd~~~~~l~vDRs~sg~~ 84 (164)
T d1y4wa1 34 FKVDLSFSAKSKASTFAIALRASANFTEQTLVGYDFAKQQIFLDRTHSGDV 84 (164)
T ss_dssp EEEEEEEETTCSSSEEEEEEEECTTSSSCEEEEEETTTTEEEEECTTSSCC
T ss_pred EEEEEEEEcCCCccEEEEEEEEcCCCCEEEEEEEECCCCEEEEECCCCCCC
Confidence 34444555444444666655554 45789999999999999999887654
No 10
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos lablab), Fril [TaxId: 35936]}
Probab=24.61 E-value=55 Score=24.38 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=30.1
Q ss_pred CeEEEEEecCceeEEEEEeeCCCCCCCCceEEEEEEecCCCC
Q 028490 152 DVIRASYDKSRKVLDLGWLWKPSFNRDGKCKVSASFRLGEGL 193 (208)
Q Consensus 152 d~vratY~~s~k~lgleWsr~s~~~~~G~fKv~a~~~L~d~~ 193 (208)
..++..|+..++.|.+.+..+... +..++..++|.+..
T Consensus 160 ~~v~I~Yd~~~~~L~V~~~~~~~~----~~~l~~~vdL~~~l 197 (230)
T g1qmo.1 160 ATAHISYNSVSKRLSVTSYYAGSK----PATLSYDIELHTVL 197 (230)
T ss_dssp EEEEEEEETTTTEEEEEEECSSSC----CEEEEEECCGGGTS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCC----ceEEEEEeehhhcC
Confidence 357899999999999987765544 67889999986554
No 11
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=24.45 E-value=61 Score=23.44 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=37.4
Q ss_pred EEEEEecCceeEEEEEee--CCccCcCccEEEEecCceEEEeeeCCCCCeEEEEeeeeeecceeeeEEEeeecCCceeEE
Q 028490 15 GTVAADAGELKLRAYVIA--GPALNASDLSFSVEKPGSFLVDFDVPQKNVRFQFMNTARILEKQLYMTYTHMTGENRTIL 92 (208)
Q Consensus 15 atv~~~aGdlklrAsf~~--GpsL~~~GLsL~vEKPGsF~iDydv~~~d~rFQFmnt~~V~~K~lnlTYtH~~~~nrT~l 92 (208)
=.+.++=|.-+++..|.. ...+++.|+.-.-.++|+|. +-.| .+.|-+-+|+|..+|..+...+.|
T Consensus 67 f~v~vPnG~Y~Vtv~~Gd~~~~~~~~eg~~~~~~~~g~~~----------~~~~--~V~VtDG~L~l~ft~~~~G~~~~i 134 (146)
T d2o14a1 67 FNVDLPNGLYEVKVTLGNTARASVAAEGVFQVINMTGDGA----------EDTF--QIPVTDGQLNLLVTEGKAGTAFTL 134 (146)
T ss_dssp EEEECCSEEEEEEEEESSCSEEEEEETTEEEEEEEESTTC----------EEEE--EEEECSSEEEEEEEESSTTSCCEE
T ss_pred EEEECCCCeEEEEEEEecCCCccEEEeeEEeccccCCccE----------EEEE--EEEEECCeEEEEEecCCCCCccEE
Confidence 445555565555555421 11223334443333455442 2233 477888899999888776666666
Q ss_pred ee
Q 028490 93 DG 94 (208)
Q Consensus 93 Dg 94 (208)
+.
T Consensus 135 n~ 136 (146)
T d2o14a1 135 SA 136 (146)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 12
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=23.53 E-value=60 Score=22.56 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=17.5
Q ss_pred eCCccCcCccEEEEe--cCceEEEee
Q 028490 32 AGPALNASDLSFSVE--KPGSFLVDF 55 (208)
Q Consensus 32 ~GpsL~~~GLsL~vE--KPGsF~iDy 55 (208)
.|.|..++|++|+|. ++.+|.+|.
T Consensus 44 ~~~SIavnGvcLTV~~~~~~~f~v~l 69 (110)
T d1kzla2 44 YKGYIALDGTSLTITHVDDSTFSIMM 69 (110)
T ss_dssp TTCEEEETTEEEEEEEECSSCEEEEE
T ss_pred hhheEEcCCcEEEEEeecCCEEEEEE
Confidence 455777779999998 556666654
No 13
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=23.24 E-value=70 Score=21.39 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=19.4
Q ss_pred eeCCccCcCccEEEEe--cCceEEEeeeC
Q 028490 31 IAGPALNASDLSFSVE--KPGSFLVDFDV 57 (208)
Q Consensus 31 ~~GpsL~~~GLsL~vE--KPGsF~iDydv 57 (208)
.-|.|..++|.+|+|. ++.+|.++.=+
T Consensus 37 ~~g~SIavnGvcLTV~~~~~~~f~~~ii~ 65 (93)
T d1i8da1 37 ETGASVAHNGCCLTVTEINGNHVSFDLMK 65 (93)
T ss_dssp CTTCEEEETTEEEEEEEEETTEEEEEEEH
T ss_pred ccCCeEEECCEEEEEEecCCccEEEEEeH
Confidence 4577887889999997 56666666543
Done!