BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028491
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 7/154 (4%)
Query: 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGI 112
G + +VA++L K D + + +D V DA+K MA+ IG+L+V+ + IAGI
Sbjct: 3 GSMSTTVAQILKAKPDSGRTIYTVTK-NDFVYDAIKLMAEKGIGALLVV---DGDDIAGI 58
Query: 113 FTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172
TERDY RK+V Q RS K TRV EIMT + + + PS + M LMT+ +RH+PV+D
Sbjct: 59 VTERDYARKVVLQERSSKATRVEEIMTAKVRYVE-PSQSTD-ECMALMTEHRMRHLPVLD 116
Query: 173 -GRIVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205
G+++G+ISI D+V++V+ Q+ + +L +I G
Sbjct: 117 GGKLIGLISIGDLVKSVIADQQFTISQLEHYIHG 150
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 6/115 (5%)
Query: 80 DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMT 139
DD+V +A++ MA NIG+L+V+K + + GI TERD+ RK + K T+V EIMT
Sbjct: 25 DDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMT 81
Query: 140 DENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQQK 193
+ + L + M L+T+ +RH+PV+ DG+++G++SI D+V+ + Q +
Sbjct: 82 RQVAYVDLNNTNE--DCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAISQHQ 134
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118
V ++L KG D V D ++ +A + H IG++VV + GIFTERD
Sbjct: 26 VKDLLDRKGRDVV----TVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTERDL 79
Query: 119 LRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPV-IDGRIVG 177
++ + GQG + V+ MT ++ ++ M++MT RHVPV +GR+ G
Sbjct: 80 VKAVAGQGAASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAG 137
Query: 178 MISIVDVVRAVVEQQKGELKRLNEFIRG 205
+ISI DVV+A + + + E + + +I G
Sbjct: 138 IISIGDVVKARIGEIEAEAEHIKAYIAG 165
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 15/119 (12%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVL---KPGEQQHIAGIFTERDYLRKIVGQGRSPKY 131
+ D + D K + NIGS++V+ KP GI TERD + K +G+G+S +
Sbjct: 15 ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIV-KAIGKGKSLE- 66
Query: 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
T+ E T LIT+ D+ I A+ L +IRH+PV+D G + G+ISI D+ RA+
Sbjct: 67 TKAEEFXT--ASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-RIVGMISIVDVVRAV 188
+ ++I++ DA + ++ T+K+I V V+DG + VG+I+ D+V+A+
Sbjct: 11 KTQVISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKPVGIITERDIVKAI 59
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 64 MTKGDDKVGSWLCCRSD-DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122
MT D + + + C + +T+ A + M +H+IG+L + G+ + G+ T+RD + K
Sbjct: 7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKG 64
Query: 123 VGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISI 181
+ G P E+ D + + ++A+I + +M + +R VPVI + R+VG+++
Sbjct: 65 LAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE 122
Query: 182 VDVVRAVVEQ 191
D+ R + E
Sbjct: 123 ADIARHLPEH 132
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 20/129 (15%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
+ D+TV+ A+ M +H I L V+ E + + GI T++D + +G+ V
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVV---EDEKVVGIITKKDIAAR---EGK-----LV 152
Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV-----RA 187
E+MT E +IT+P + A+++M + I +PV+D G++VG+I++ D+V +
Sbjct: 153 KELMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN 210
Query: 188 VVEQQKGEL 196
V + GEL
Sbjct: 211 AVRDENGEL 219
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 12/117 (10%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY-LRKIVGQGRSPKYTR 133
+ D TV++A+ MA++ IG L V+ E+ + G+ T RD K + + +
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRDVRFEKNLSK-------K 156
Query: 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI--DGRIVGMISIVDVVRAV 188
+ ++MT KLI P D ++ A +++ I +P++ D ++VG+I+I D++ +
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
+ + DTV+ K ++++ GS VV E I G+ TERD L K+V +G++PK +V
Sbjct: 3 IVVQPKDTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKV 59
Query: 135 AEIMT 139
EI T
Sbjct: 60 EEIXT 64
>pdb|1Y5H|A Chain A, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
pdb|1Y5H|B Chain B, Crystal Structure Of Truncated Se-Met Hypoxic Response
Protein I (Hrpi)
Length = 133
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 76 CCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135
C +T+ A + +H+IG+L + G+ + G T+RD + K + G P
Sbjct: 20 CVGEHETLTAAAQYXREHDIGALPIC--GDDDRLHGXLTDRDIVIKGLAAGLDPNTATAG 77
Query: 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI-DGRIVGMISIVDVVRAVVEQ 191
E+ D + + ++A+I + + + +R VPVI + R+VG+++ D+ R + E
Sbjct: 78 ELARD--SIYYVDANASIQEXLNVXEEHQVRRVPVISEHRLVGIVTEADIARHLPEH 132
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
TV DAVK M ++++ LVV + + G+ +ER +++ + + + P + +M
Sbjct: 41 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM--R 96
Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
+ + SD ++ +++ + V+D GR+VG++++ D+ R
Sbjct: 97 KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 143
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
TV DAVK M ++++ LVV + + G+ +ER +++ + + + P + +M
Sbjct: 27 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM--R 82
Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVR 186
+ + SD ++ +++ + V+D GR+VG++++ D+ R
Sbjct: 83 KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 129
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 105 EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKH 164
E+ + G+ + RD IV R TRVAEIM K++ + +D + +LM D
Sbjct: 179 EKGRLKGVLSLRDL---IVADPR----TRVAEIMN--PKVVYVRTDTDQEEVARLMADYD 229
Query: 165 IRHVPVID--GRIVGMISIVDVV 185
+PV+D GR+VG++++ DV+
Sbjct: 230 FTVLPVVDEEGRLVGIVTVDDVL 252
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 105 EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKH 164
E+ + G+ + RD IV R TRVAEIM K++ + +D + +LM D
Sbjct: 199 EKGRLKGVLSLRDL---IVADPR----TRVAEIMN--PKVVYVRTDTDQEEVARLMADYD 249
Query: 165 IRHVPVID--GRIVGMISIVDVVRAVVEQQKGE 195
+PV+D GR+VG++++ DV+ V+E + E
Sbjct: 250 FTVLPVVDEEGRLVGIVTVDDVLD-VLEAEATE 281
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 83 VEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDEN 142
V DA M ++ I + V+ +++ + GI T RD +R I Q S +++++MT E
Sbjct: 132 VYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI--QDYS---IKISDVMTKE- 184
Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
+LIT P + A +++ I +P++D G + G+I+I D+ + +
Sbjct: 185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISI 181
RV IMT ITLP+ N +A++L +R PV++ G++VG+IS+
Sbjct: 2 RVKTIMTQNPVTITLPATRN--YALELFKKYKVRSFPVVNKEGKLVGIISV 50
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
+ R DDT++ K +H IG V+ + H+ GI TE D+LR
Sbjct: 29 VTVREDDTLDAVAKTXLEHQIGXAPVVD--QNGHLVGIITESDFLR 72
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 78 RSDDTVED--AVKNMAQHNIGSLVVLKPGEQQHIA-GIFTERDYLRKIVGQGRSPKYTRV 134
+ D T D A+ HN ++ V G + G+ T+RDY + + T+V
Sbjct: 111 KPDQTFADVLAISQRTTHN--TVAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKV 163
Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172
+++MT +KL+T D + A +++ +K + +P+ID
Sbjct: 164 SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID 201
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 78 RSDDTVED--AVKNMAQHNIGSLVVLKPGEQQHIA-GIFTERDYLRKIVGQGRSPKYTRV 134
+ D T D A+ HN ++ V G + G+ T+RDY + + T+V
Sbjct: 111 KPDQTFADVLAISQRTTHN--TVAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKV 163
Query: 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172
+++MT +KL+T D + A +++ +K + +P+ID
Sbjct: 164 SDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID 201
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
IT S+ +I+ A +++ +I H+P++D G++VG+I+ D+ +A+ + +K
Sbjct: 12 ITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKK 62
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDE 141
TV++A++ + ++ I V+ E + G+ ++ D L G + V ++++
Sbjct: 25 TVDEALELLVENRITGFPVID--EDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKT 82
Query: 142 N-KLI---------TLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVV 189
N KL+ + N+ A +++ + R +PV+D G++VG+I+ +VVRA +
Sbjct: 83 NGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL 142
Query: 190 EQQK 193
+ ++
Sbjct: 143 QIKR 146
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
IT S+ +I+ A +++ +I H+P++D G++VG+I+ D+ +A+ + +K
Sbjct: 14 ITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKK 64
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120
+ R DDT++ K +H IG V+ + H+ GI TE D+LR
Sbjct: 29 VTVREDDTLDAVAKTXLEHQIGCAPVVD--QNGHLVGIITESDFLR 72
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 105 EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKH 164
E+ + G+ + RD IV R TRVAEI K++ + +D + +L D
Sbjct: 179 EKGRLKGVLSLRDL---IVADPR----TRVAEIXN--PKVVYVRTDTDQEEVARLXADYD 229
Query: 165 IRHVPVID--GRIVGMISIVDVV 185
+PV+D GR+VG++++ DV+
Sbjct: 230 FTVLPVVDEEGRLVGIVTVDDVL 252
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR--KIVGQGRSPK--------- 130
TV++A++ + ++ I V+ E + G+ ++ D L I G GR+
Sbjct: 25 TVDEALELLVENRITGFPVID--EDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDST 82
Query: 131 ---YTRVAEIMTDEN-KLI---------TLPSDANILHAMQLMTDKHIRHVPVID--GRI 175
+ V ++++ N KL+ + N+ A +++ + R +PV+D G++
Sbjct: 83 WKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKL 142
Query: 176 VGMISIVDVVRAVVEQQK 193
VG+I+ +VVRA ++ ++
Sbjct: 143 VGIITRGNVVRAALQIKR 160
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 104 GEQQHIAGIFTERDYLRKIVGQGR---SPKYTRVAEIMTDENKLITLPSDANILHAMQLM 160
G Q+ +F + D K + + S Y +V + + L+ S N+ A +L+
Sbjct: 66 GRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDS-TNLEDAARLL 124
Query: 161 TDKHIRHVPVID--GRIVGMISIVDVVRAVVEQQK 193
+ R +PV+D G+++G+++ +VVRA ++ ++
Sbjct: 125 LETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR 159
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR-------- 133
T+ A+ M ++ L V+ G + + GI T D + +G G R
Sbjct: 22 TIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIV-DFMGGGSKYNLIREKHERNFL 79
Query: 134 ------VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVV 185
V EIM E +ITL +A+I A++ K++ P+++ +++ +I+ DV+
Sbjct: 80 AAINEPVREIM--EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVI 137
Query: 186 RAVVEQ 191
RA++++
Sbjct: 138 RALLDK 143
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134
+ + + +++A++ N+G ++ ++ + + TERD +R ++ +
Sbjct: 95 ITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLDK--------- 143
Query: 135 AEIMTDENKLITLPSDANILHAM---------QLMTDKHIRHVPVI-DGRIVGMISIVDV 184
DEN++I +++ A + M R +PV+ +GR+VG+I+ D
Sbjct: 144 ----IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDF 199
Query: 185 VR 186
++
Sbjct: 200 IK 201
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 83 VEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDEN 142
V DA ++ I + V+ +++ + GI T RD R I Q S +++++ T E
Sbjct: 132 VYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD-XRFI--QDYS---IKISDVXTKE- 184
Query: 143 KLITLPSDANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAV 188
+LIT P + A +++ I +P++D G + G+I+I D+ + +
Sbjct: 185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVI 232
>pdb|1VR9|A Chain A, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
pdb|1VR9|B Chain B, Crystal Structure Of A Cbs Domain Pair/act Domain Protein
(tm0892) From Thermotoga Maritima At 1.70 A Resolution
Length = 213
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 145 ITLPS-----DANILHAMQLMTDKHIRHVPVID--GRIVGMISIVDVVRAVVE 190
++LP + NI HA+ L + ++PV+D R+ G +S+ D + A++E
Sbjct: 78 VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEXRLKGAVSLHDFLEALIE 130
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDV 184
+K+ L + ++ A +M DK+++ +PV DG ++GM+S ++
Sbjct: 12 DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI 56
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 142 NKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDV 184
+K+ L + ++ A +M DK+++ +PV DG ++GM+S ++
Sbjct: 15 DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI 59
>pdb|2RGK|A Chain A, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|B Chain B, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|C Chain C, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|D Chain D, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|E Chain E, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
pdb|2RGK|F Chain F, Functional Annotation Of Escherichia Coli Yihs-Encoded
Protein
Length = 421
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 68 DDKVGSWLCCRSDDTVEDAVKNMAQHNIGSL 98
D K G W C +D+ V DA K QH L
Sbjct: 88 DKKYGGWYACVNDEGVVDASKQGYQHFFALL 118
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 145 ITLPSDANILHAMQLMTDKHIRHVPVI---DGRIVGMIS----IVDVVRAVVEQQKGELK 197
+ L SDA + A+ LM + +PV+ DG ++G++ I +V +Q +K
Sbjct: 396 VILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK 455
Query: 198 RLNE 201
LN+
Sbjct: 456 ALNK 459
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 156 AMQLMTDKHIRHVPVIDG--RIVGMISIVDVVRAVVEQQKGELKR 198
A LM IRHVP++D +++G++S D++ A Q+ L+R
Sbjct: 27 AKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA----QESSLQR 67
>pdb|2ZBL|A Chain A, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|B Chain B, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|C Chain C, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|D Chain D, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|E Chain E, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
pdb|2ZBL|F Chain F, Functional Annotation Of Salmonella Enterica Yihs-Encoded
Protein
Length = 421
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 68 DDKVGSWLCCRSDDTVEDAVKNMAQHNIGSL 98
D K G W C +D V DA K QH L
Sbjct: 88 DKKYGGWYACVNDQGVVDASKQGYQHFFALL 118
>pdb|2AFA|A Chain A, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|B Chain B, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|C Chain C, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|D Chain D, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|E Chain E, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
pdb|2AFA|F Chain F, Crystal Structure Of Putative Nag Isomerase From
Salmonella Typhimurium
Length = 425
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 68 DDKVGSWLCCRSDDTVEDAVKNMAQHNIGSL 98
D K G W C +D V DA K QH L
Sbjct: 90 DKKYGGWYACVNDQGVVDASKQGYQHFFALL 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,964,861
Number of Sequences: 62578
Number of extensions: 229775
Number of successful extensions: 556
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 48
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)