Query 028491
Match_columns 208
No_of_seqs 171 out of 1908
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2905 Predicted signal-trans 99.9 8.1E-22 1.8E-26 167.7 7.1 166 13-190 102-271 (610)
2 COG2524 Predicted transcriptio 99.8 3.6E-20 7.8E-25 144.0 12.7 123 53-190 168-292 (294)
3 COG3620 Predicted transcriptio 99.8 3.3E-19 7.2E-24 129.2 11.6 122 55-190 63-185 (187)
4 PRK10892 D-arabinose 5-phospha 99.8 6.9E-18 1.5E-22 140.5 15.2 121 55-187 200-323 (326)
5 COG3448 CBS-domain-containing 99.8 3.1E-18 6.8E-23 135.7 12.0 130 53-193 241-376 (382)
6 cd04630 CBS_pair_17 The CBS do 99.8 2.2E-17 4.9E-22 116.4 13.7 109 74-186 3-113 (114)
7 cd04619 CBS_pair_6 The CBS dom 99.8 3.7E-17 8E-22 115.5 13.8 109 74-186 3-113 (114)
8 cd04623 CBS_pair_10 The CBS do 99.7 1E-16 2.2E-21 112.4 13.8 109 74-186 3-112 (113)
9 cd04603 CBS_pair_KefB_assoc Th 99.7 5.5E-17 1.2E-21 114.1 12.4 106 74-186 3-110 (111)
10 PRK11543 gutQ D-arabinose 5-ph 99.7 9E-17 1.9E-21 133.5 14.8 121 56-187 196-318 (321)
11 cd04641 CBS_pair_28 The CBS do 99.7 1.8E-16 3.9E-21 112.9 13.6 109 74-186 3-119 (120)
12 cd04629 CBS_pair_16 The CBS do 99.7 1.9E-16 4.2E-21 111.3 11.9 109 74-186 3-113 (114)
13 PRK15094 magnesium/cobalt effl 99.7 9.2E-17 2E-21 131.5 11.0 130 54-196 64-196 (292)
14 cd04617 CBS_pair_4 The CBS dom 99.7 4.7E-16 1E-20 110.4 13.3 110 74-186 3-117 (118)
15 PRK01862 putative voltage-gate 99.7 2.3E-16 5E-21 140.5 14.3 129 50-190 440-572 (574)
16 cd04621 CBS_pair_8 The CBS dom 99.7 4.3E-16 9.3E-21 113.6 13.1 109 74-186 3-134 (135)
17 cd04625 CBS_pair_12 The CBS do 99.7 6.8E-16 1.5E-20 108.2 13.4 108 74-186 3-111 (112)
18 cd04607 CBS_pair_NTP_transfera 99.7 9.4E-16 2E-20 107.8 13.6 107 74-186 4-112 (113)
19 COG4109 Predicted transcriptio 99.7 2E-16 4.3E-21 128.2 11.3 123 56-194 187-311 (432)
20 cd04802 CBS_pair_3 The CBS dom 99.7 1.1E-15 2.4E-20 107.1 13.8 109 73-186 2-111 (112)
21 cd04593 CBS_pair_EriC_assoc_ba 99.7 7.6E-16 1.7E-20 108.6 13.1 108 74-186 3-114 (115)
22 cd04626 CBS_pair_13 The CBS do 99.7 9.2E-16 2E-20 107.5 12.9 107 74-186 3-110 (111)
23 cd04600 CBS_pair_HPP_assoc Thi 99.7 7.4E-16 1.6E-20 110.0 12.6 110 73-186 3-123 (124)
24 cd04589 CBS_pair_CAP-ED_DUF294 99.7 1.3E-15 2.9E-20 106.7 13.6 108 74-187 3-111 (111)
25 cd04618 CBS_pair_5 The CBS dom 99.7 4.1E-16 8.8E-21 107.6 10.7 91 74-186 3-97 (98)
26 cd04608 CBS_pair_PALP_assoc Th 99.7 3.1E-16 6.8E-21 112.7 10.4 110 74-188 4-124 (124)
27 PRK07807 inosine 5-monophospha 99.7 4.3E-16 9.3E-21 134.9 13.1 121 53-191 85-207 (479)
28 cd04643 CBS_pair_30 The CBS do 99.7 8.3E-16 1.8E-20 108.4 12.2 107 74-186 3-115 (116)
29 cd04639 CBS_pair_26 The CBS do 99.7 1.3E-15 2.8E-20 106.6 12.9 106 74-186 3-110 (111)
30 cd04636 CBS_pair_23 The CBS do 99.7 1E-15 2.2E-20 110.8 12.6 109 73-186 2-131 (132)
31 TIGR00400 mgtE Mg2+ transporte 99.7 1.3E-15 2.9E-20 131.8 15.2 128 53-198 127-261 (449)
32 cd04624 CBS_pair_11 The CBS do 99.7 2.8E-15 6E-20 105.1 13.9 107 74-186 3-111 (112)
33 cd04586 CBS_pair_BON_assoc Thi 99.7 8.6E-16 1.9E-20 111.6 11.6 110 73-186 3-134 (135)
34 cd04801 CBS_pair_M50_like This 99.7 1E-15 2.2E-20 107.8 11.6 108 74-186 3-113 (114)
35 cd04596 CBS_pair_DRTGG_assoc T 99.7 1.9E-15 4E-20 105.6 12.8 102 74-186 4-107 (108)
36 cd04613 CBS_pair_SpoIVFB_EriC_ 99.7 1.6E-15 3.4E-20 106.4 12.4 109 73-186 2-113 (114)
37 cd04622 CBS_pair_9 The CBS dom 99.7 2.4E-15 5.3E-20 105.5 13.4 108 74-186 3-112 (113)
38 cd04595 CBS_pair_DHH_polyA_Pol 99.7 2.6E-15 5.7E-20 105.0 13.4 105 74-186 4-109 (110)
39 TIGR03520 GldE gliding motilit 99.7 3E-16 6.5E-21 134.1 10.2 129 53-195 187-317 (408)
40 cd04800 CBS_pair_CAP-ED_DUF294 99.7 3E-15 6.4E-20 104.8 13.5 107 74-186 3-110 (111)
41 cd04587 CBS_pair_CAP-ED_DUF294 99.7 2.1E-15 4.5E-20 105.8 12.6 108 74-186 3-112 (113)
42 cd04632 CBS_pair_19 The CBS do 99.7 2.1E-15 4.5E-20 108.5 12.7 109 74-186 3-127 (128)
43 cd04627 CBS_pair_14 The CBS do 99.7 2E-15 4.3E-20 107.9 12.3 109 73-185 2-121 (123)
44 cd04605 CBS_pair_MET2_assoc Th 99.7 5.6E-15 1.2E-19 103.2 14.2 105 73-186 3-109 (110)
45 cd04803 CBS_pair_15 The CBS do 99.7 2.5E-15 5.5E-20 106.9 12.6 109 74-186 3-121 (122)
46 cd04615 CBS_pair_2 The CBS dom 99.7 3.7E-15 8.1E-20 104.6 13.0 108 74-186 3-112 (113)
47 cd04640 CBS_pair_27 The CBS do 99.7 2.6E-15 5.7E-20 107.9 12.2 109 74-186 3-125 (126)
48 cd04631 CBS_pair_18 The CBS do 99.7 3.1E-15 6.8E-20 106.9 12.3 109 74-186 3-124 (125)
49 cd04642 CBS_pair_29 The CBS do 99.6 2.8E-15 6.1E-20 107.7 11.7 108 74-186 3-125 (126)
50 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 5.7E-15 1.2E-19 102.5 12.9 101 74-186 3-105 (106)
51 cd04599 CBS_pair_GGDEF_assoc2 99.6 5.3E-15 1.2E-19 102.4 12.5 100 74-185 3-103 (105)
52 cd04590 CBS_pair_CorC_HlyC_ass 99.6 7.3E-15 1.6E-19 102.8 13.2 105 74-186 3-110 (111)
53 cd04614 CBS_pair_1 The CBS dom 99.6 2.4E-15 5.1E-20 103.3 10.5 92 73-186 2-95 (96)
54 cd04588 CBS_pair_CAP-ED_DUF294 99.6 9.7E-15 2.1E-19 102.0 13.7 105 74-186 3-109 (110)
55 cd04620 CBS_pair_7 The CBS dom 99.6 9.1E-15 2E-19 103.0 13.4 107 74-186 3-114 (115)
56 cd04594 CBS_pair_EriC_assoc_ar 99.6 4.4E-15 9.5E-20 103.1 11.5 99 75-186 4-103 (104)
57 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 9.4E-15 2E-19 101.7 13.2 103 74-186 4-108 (109)
58 PRK07107 inosine 5-monophospha 99.6 4E-15 8.8E-20 129.5 13.6 121 57-188 94-219 (502)
59 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 1.1E-14 2.5E-19 102.1 13.4 108 74-186 4-113 (114)
60 cd04633 CBS_pair_20 The CBS do 99.6 7E-15 1.5E-19 104.4 12.0 108 74-186 3-120 (121)
61 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 1.7E-14 3.6E-19 100.8 13.5 106 74-186 3-110 (111)
62 cd04635 CBS_pair_22 The CBS do 99.6 7.1E-15 1.5E-19 104.6 11.6 109 74-186 3-121 (122)
63 cd04585 CBS_pair_ACT_assoc2 Th 99.6 1.5E-14 3.3E-19 102.5 13.2 108 74-186 3-121 (122)
64 cd04612 CBS_pair_SpoIVFB_EriC_ 99.6 2E-14 4.4E-19 100.3 13.2 106 74-186 3-110 (111)
65 cd04606 CBS_pair_Mg_transporte 99.6 7.6E-15 1.7E-19 102.6 10.9 100 77-187 2-108 (109)
66 cd04602 CBS_pair_IMPDH_2 This 99.6 1.5E-14 3.3E-19 101.9 12.3 103 74-186 4-113 (114)
67 TIGR01137 cysta_beta cystathio 99.6 1.8E-14 3.9E-19 125.1 14.9 122 53-188 331-453 (454)
68 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 1.1E-14 2.3E-19 126.1 13.0 119 54-191 85-205 (475)
69 cd04609 CBS_pair_PALP_assoc2 T 99.6 2.2E-14 4.8E-19 99.9 12.2 106 73-186 2-109 (110)
70 PRK11573 hypothetical protein; 99.6 1E-14 2.2E-19 124.7 12.5 134 53-196 183-318 (413)
71 cd04610 CBS_pair_ParBc_assoc T 99.6 3.4E-14 7.3E-19 98.6 12.3 101 74-186 4-106 (107)
72 cd04601 CBS_pair_IMPDH This cd 99.6 2.4E-14 5.3E-19 99.8 11.6 103 74-186 4-109 (110)
73 cd04638 CBS_pair_25 The CBS do 99.6 4.7E-14 1E-18 98.0 12.8 102 74-186 3-105 (106)
74 cd04591 CBS_pair_EriC_assoc_eu 99.6 2.9E-14 6.3E-19 99.4 11.5 98 74-187 4-105 (105)
75 cd04584 CBS_pair_ACT_assoc Thi 99.6 4.8E-14 1E-18 100.0 12.8 109 74-186 3-120 (121)
76 PLN02274 inosine-5'-monophosph 99.6 3.7E-14 8.1E-19 123.7 13.9 109 74-190 110-223 (505)
77 cd04637 CBS_pair_24 The CBS do 99.6 5.4E-14 1.2E-18 100.1 12.4 108 74-186 3-121 (122)
78 cd04634 CBS_pair_21 The CBS do 99.6 7.9E-14 1.7E-18 102.5 13.3 108 74-186 3-142 (143)
79 TIGR01302 IMP_dehydrog inosine 99.6 2.6E-14 5.7E-19 123.6 12.4 115 58-189 81-201 (450)
80 TIGR00393 kpsF KpsF/GutQ famil 99.6 4.6E-14 9.9E-19 114.4 12.7 113 56-180 154-268 (268)
81 COG2239 MgtE Mg/Co/Ni transpor 99.6 3.9E-14 8.4E-19 121.2 12.4 131 53-201 128-265 (451)
82 PRK05567 inosine 5'-monophosph 99.6 6.3E-14 1.4E-18 122.4 13.6 115 58-189 88-205 (486)
83 PTZ00314 inosine-5'-monophosph 99.6 4.9E-14 1.1E-18 122.9 12.2 116 59-189 98-218 (495)
84 COG0517 FOG: CBS domain [Gener 99.5 2.3E-13 4.9E-18 95.9 12.5 105 74-185 9-117 (117)
85 cd02205 CBS_pair The CBS domai 99.5 4.9E-13 1.1E-17 92.6 13.8 108 74-186 3-112 (113)
86 cd04598 CBS_pair_GGDEF_assoc T 99.5 2.3E-13 4.9E-18 96.3 10.9 108 74-186 3-118 (119)
87 COG1253 TlyC Hemolysins and re 99.5 1.3E-13 2.8E-18 118.8 11.2 133 53-197 202-336 (429)
88 cd04592 CBS_pair_EriC_assoc_eu 99.5 5E-13 1.1E-17 97.3 11.6 99 74-174 3-118 (133)
89 PRK14869 putative manganese-de 99.4 2.9E-12 6.3E-17 113.7 14.3 122 57-189 68-304 (546)
90 COG4536 CorB Putative Mg2+ and 99.4 1.5E-12 3.4E-17 106.7 8.4 132 54-195 197-330 (423)
91 PF00571 CBS: CBS domain CBS d 99.3 4E-11 8.6E-16 74.0 7.7 56 59-123 1-56 (57)
92 COG4535 CorC Putative Mg2+ and 99.2 1.3E-11 2.8E-16 95.5 6.0 130 54-195 64-195 (293)
93 KOG1764 5'-AMP-activated prote 99.2 1.2E-10 2.6E-15 98.5 12.0 116 74-191 239-361 (381)
94 PF00571 CBS: CBS domain CBS d 99.2 1.4E-10 3E-15 71.6 7.4 54 134-189 1-56 (57)
95 PRK10070 glycine betaine trans 99.0 8.3E-09 1.8E-13 88.1 13.7 120 57-191 274-395 (400)
96 TIGR01186 proV glycine betaine 99.0 1.2E-08 2.6E-13 86.1 14.1 107 74-191 252-360 (363)
97 COG3620 Predicted transcriptio 99.0 2.9E-09 6.2E-14 77.8 7.4 90 114-207 49-140 (187)
98 KOG2550 IMP dehydrogenase/GMP 98.9 5.5E-09 1.2E-13 86.8 6.9 108 73-188 117-227 (503)
99 TIGR00400 mgtE Mg2+ transporte 98.8 1.1E-08 2.3E-13 88.9 6.8 115 56-191 194-308 (449)
100 COG2524 Predicted transcriptio 98.7 3.3E-08 7.3E-13 77.7 5.8 73 129-205 169-242 (294)
101 PRK14869 putative manganese-de 98.7 1.4E-08 3E-13 90.3 3.5 121 56-187 245-391 (546)
102 KOG0474 Cl- channel CLC-7 and 98.6 1.2E-07 2.7E-12 82.7 8.4 126 53-188 578-746 (762)
103 COG3448 CBS-domain-containing 98.6 5.3E-08 1.1E-12 78.1 5.0 60 129-190 242-303 (382)
104 KOG0475 Cl- channel CLC-3 and 98.6 6.3E-07 1.4E-11 78.4 11.2 113 74-188 558-694 (696)
105 cd04603 CBS_pair_KefB_assoc Th 98.6 1.6E-07 3.4E-12 65.6 5.9 56 56-120 55-110 (111)
106 cd04619 CBS_pair_6 The CBS dom 98.5 3.9E-07 8.5E-12 63.8 6.3 56 56-120 58-113 (114)
107 PRK11573 hypothetical protein; 98.5 8.3E-07 1.8E-11 76.3 9.0 90 115-208 174-266 (413)
108 cd04597 CBS_pair_DRTGG_assoc2 98.5 4.6E-07 1E-11 63.8 6.2 54 57-119 58-111 (113)
109 TIGR03520 GldE gliding motilit 98.4 3.5E-07 7.6E-12 78.5 5.7 76 128-207 187-265 (408)
110 PRK15094 magnesium/cobalt effl 98.4 6.9E-07 1.5E-11 73.4 6.6 93 111-207 48-143 (292)
111 cd04600 CBS_pair_HPP_assoc Thi 98.4 1.1E-06 2.4E-11 62.2 5.9 56 56-120 68-123 (124)
112 cd04607 CBS_pair_NTP_transfera 98.3 1.6E-06 3.6E-11 60.3 6.6 55 56-119 57-111 (113)
113 cd04617 CBS_pair_4 The CBS dom 98.3 1.4E-06 3.1E-11 61.3 5.8 58 54-120 55-117 (118)
114 cd04620 CBS_pair_7 The CBS dom 98.3 2E-06 4.3E-11 60.1 6.4 56 56-120 57-114 (115)
115 cd04630 CBS_pair_17 The CBS do 98.3 1.8E-06 4E-11 60.3 6.0 55 56-120 59-113 (114)
116 cd04606 CBS_pair_Mg_transporte 98.3 2.1E-06 4.6E-11 59.5 6.3 57 56-121 52-108 (109)
117 PRK05567 inosine 5'-monophosph 98.3 3.8E-06 8.1E-11 73.8 9.2 113 56-187 146-265 (486)
118 cd04604 CBS_pair_KpsF_GutQ_ass 98.3 2.6E-06 5.5E-11 59.2 6.7 56 56-120 58-113 (114)
119 cd04618 CBS_pair_5 The CBS dom 98.3 1.5E-06 3.2E-11 59.6 5.2 45 74-120 52-97 (98)
120 cd04597 CBS_pair_DRTGG_assoc2 98.3 2.1E-06 4.4E-11 60.4 6.0 53 132-186 58-112 (113)
121 cd04615 CBS_pair_2 The CBS dom 98.3 3E-06 6.5E-11 58.9 6.6 58 54-120 55-112 (113)
122 cd04596 CBS_pair_DRTGG_assoc T 98.3 3E-06 6.5E-11 58.6 6.6 56 56-120 52-107 (108)
123 TIGR01303 IMP_DH_rel_1 IMP deh 98.3 8.4E-06 1.8E-10 71.2 10.7 57 57-122 146-202 (475)
124 PRK07807 inosine 5-monophospha 98.3 6.1E-06 1.3E-10 72.1 9.8 95 57-172 148-246 (479)
125 COG4536 CorB Putative Mg2+ and 98.3 2.8E-07 6E-12 76.3 1.1 78 131-208 199-279 (423)
126 cd04608 CBS_pair_PALP_assoc Th 98.3 3.6E-06 7.9E-11 60.1 6.8 64 143-206 3-68 (124)
127 cd04610 CBS_pair_ParBc_assoc T 98.3 3.6E-06 7.8E-11 57.8 6.5 56 56-120 51-106 (107)
128 KOG1764 5'-AMP-activated prote 98.2 1.3E-05 2.7E-10 68.2 10.9 117 74-191 164-288 (381)
129 cd04582 CBS_pair_ABC_OpuCA_ass 98.2 3.5E-06 7.5E-11 57.9 6.4 54 58-120 52-105 (106)
130 cd04585 CBS_pair_ACT_assoc2 Th 98.2 3.4E-06 7.3E-11 59.2 6.4 56 56-120 66-121 (122)
131 cd04583 CBS_pair_ABC_OpuCA_ass 98.2 4E-06 8.7E-11 57.7 6.4 55 57-120 54-108 (109)
132 cd04635 CBS_pair_22 The CBS do 98.2 3.3E-06 7.1E-11 59.5 6.0 56 56-120 66-121 (122)
133 cd04625 CBS_pair_12 The CBS do 98.2 4.2E-06 9.1E-11 58.0 6.4 55 56-120 57-111 (112)
134 cd04803 CBS_pair_15 The CBS do 98.2 5E-06 1.1E-10 58.6 6.9 57 55-120 65-121 (122)
135 cd04587 CBS_pair_CAP-ED_DUF294 98.2 2.6E-06 5.6E-11 59.1 5.2 55 57-120 58-112 (113)
136 cd04627 CBS_pair_14 The CBS do 98.2 3.5E-06 7.5E-11 59.7 5.9 44 74-119 78-121 (123)
137 cd04631 CBS_pair_18 The CBS do 98.2 4.4E-06 9.5E-11 59.1 6.4 56 56-120 69-124 (125)
138 cd04593 CBS_pair_EriC_assoc_ba 98.2 3.7E-06 8.1E-11 58.7 5.9 55 57-120 58-114 (115)
139 cd04595 CBS_pair_DHH_polyA_Pol 98.2 5.5E-06 1.2E-10 57.3 6.5 56 55-120 54-109 (110)
140 cd04611 CBS_pair_PAS_GGDEF_DUF 98.2 6.1E-06 1.3E-10 57.0 6.6 56 56-120 55-110 (111)
141 PRK10892 D-arabinose 5-phospha 98.2 4.6E-06 1E-10 69.5 6.8 58 54-121 266-323 (326)
142 cd04586 CBS_pair_BON_assoc Thi 98.2 3.7E-06 7.9E-11 60.7 5.4 55 56-120 80-134 (135)
143 cd04621 CBS_pair_8 The CBS dom 98.2 6.8E-06 1.5E-10 59.6 6.8 55 56-120 80-134 (135)
144 COG1253 TlyC Hemolysins and re 98.2 4.8E-06 1E-10 72.0 6.9 81 110-192 186-269 (429)
145 cd04639 CBS_pair_26 The CBS do 98.2 5.8E-06 1.3E-10 57.2 6.1 55 57-120 56-110 (111)
146 cd04602 CBS_pair_IMPDH_2 This 98.2 6.1E-06 1.3E-10 57.6 6.2 55 57-120 57-113 (114)
147 cd04801 CBS_pair_M50_like This 98.2 4E-06 8.6E-11 58.5 5.2 58 56-120 56-113 (114)
148 cd04629 CBS_pair_16 The CBS do 98.2 4.1E-06 9E-11 58.2 5.2 55 56-120 59-113 (114)
149 cd04626 CBS_pair_13 The CBS do 98.2 6.2E-06 1.3E-10 57.1 6.0 55 56-120 56-110 (111)
150 cd04800 CBS_pair_CAP-ED_DUF294 98.2 7.1E-06 1.5E-10 56.8 6.3 55 56-120 56-110 (111)
151 PRK07107 inosine 5-monophospha 98.1 6.8E-06 1.5E-10 72.2 7.5 60 55-121 159-218 (502)
152 cd04601 CBS_pair_IMPDH This cd 98.1 7.4E-06 1.6E-10 56.5 6.2 56 56-120 53-109 (110)
153 cd04613 CBS_pair_SpoIVFB_EriC_ 98.1 6.7E-06 1.4E-10 57.0 6.0 56 56-120 57-113 (114)
154 cd04640 CBS_pair_27 The CBS do 98.1 4.6E-06 1E-10 59.4 5.3 59 55-120 62-125 (126)
155 cd04599 CBS_pair_GGDEF_assoc2 98.1 7.7E-06 1.7E-10 55.9 6.2 54 56-119 50-103 (105)
156 cd04623 CBS_pair_10 The CBS do 98.1 9.3E-06 2E-10 56.2 6.6 55 56-120 58-112 (113)
157 cd04633 CBS_pair_20 The CBS do 98.1 5.6E-06 1.2E-10 58.2 5.6 56 55-120 65-120 (121)
158 PRK11543 gutQ D-arabinose 5-ph 98.1 7.3E-06 1.6E-10 68.2 7.1 57 56-121 262-318 (321)
159 cd04632 CBS_pair_19 The CBS do 98.1 7.9E-06 1.7E-10 58.2 6.3 58 56-120 70-127 (128)
160 cd04642 CBS_pair_29 The CBS do 98.1 5.2E-06 1.1E-10 59.1 5.3 45 74-120 81-125 (126)
161 cd04605 CBS_pair_MET2_assoc Th 98.1 1E-05 2.2E-10 55.9 6.6 54 58-120 56-109 (110)
162 COG4109 Predicted transcriptio 98.1 1.1E-05 2.4E-10 66.4 7.6 64 53-125 245-308 (432)
163 cd04622 CBS_pair_9 The CBS dom 98.1 8.8E-06 1.9E-10 56.4 6.2 55 57-120 58-112 (113)
164 cd04588 CBS_pair_CAP-ED_DUF294 98.1 1.1E-05 2.3E-10 55.8 6.6 55 57-120 55-109 (110)
165 smart00116 CBS Domain in cysta 98.1 1.1E-05 2.4E-10 46.5 5.7 46 74-121 2-47 (49)
166 cd04641 CBS_pair_28 The CBS do 98.1 7.8E-06 1.7E-10 57.6 5.8 45 74-120 75-119 (120)
167 cd04636 CBS_pair_23 The CBS do 98.1 9.4E-06 2E-10 58.3 6.3 54 57-120 78-131 (132)
168 cd04614 CBS_pair_1 The CBS dom 98.1 6.5E-06 1.4E-10 56.0 5.2 57 56-120 39-95 (96)
169 cd04589 CBS_pair_CAP-ED_DUF294 98.1 1.2E-05 2.6E-10 55.7 6.6 55 56-120 56-110 (111)
170 cd04643 CBS_pair_30 The CBS do 98.1 6.8E-06 1.5E-10 57.3 5.3 54 56-120 62-115 (116)
171 cd04802 CBS_pair_3 The CBS dom 98.1 1.2E-05 2.7E-10 55.6 6.4 55 56-120 57-111 (112)
172 cd04612 CBS_pair_SpoIVFB_EriC_ 98.1 1.4E-05 2.9E-10 55.2 6.6 55 57-120 56-110 (111)
173 cd04624 CBS_pair_11 The CBS do 98.1 1.4E-05 3.1E-10 55.3 6.4 56 56-120 56-111 (112)
174 cd04637 CBS_pair_24 The CBS do 98.1 1.5E-05 3.2E-10 56.2 6.5 55 57-120 67-121 (122)
175 cd04594 CBS_pair_EriC_assoc_ar 98.0 1E-05 2.2E-10 55.5 5.3 53 58-120 51-103 (104)
176 cd04584 CBS_pair_ACT_assoc Thi 98.0 1.8E-05 3.8E-10 55.6 6.6 56 55-120 65-120 (121)
177 smart00116 CBS Domain in cysta 98.0 2.4E-05 5.3E-10 45.0 6.0 45 144-188 2-48 (49)
178 cd04590 CBS_pair_CorC_HlyC_ass 98.0 1.8E-05 3.9E-10 54.7 6.0 54 57-120 57-110 (111)
179 PLN02274 inosine-5'-monophosph 98.0 0.00012 2.5E-09 64.6 12.1 61 56-123 162-222 (505)
180 TIGR01137 cysta_beta cystathio 98.0 1.6E-05 3.5E-10 69.2 6.8 100 104-205 300-408 (454)
181 cd04591 CBS_pair_EriC_assoc_eu 98.0 1.7E-05 3.6E-10 54.8 5.2 49 62-120 56-104 (105)
182 PRK01862 putative voltage-gate 98.0 2.1E-05 4.5E-10 70.6 6.9 74 130-205 445-520 (574)
183 cd04592 CBS_pair_EriC_assoc_eu 97.9 4.3E-05 9.3E-10 55.4 7.3 49 143-191 2-52 (133)
184 cd04609 CBS_pair_PALP_assoc2 T 97.9 3.1E-05 6.8E-10 53.2 6.2 49 143-191 2-51 (110)
185 cd04598 CBS_pair_GGDEF_assoc T 97.9 3.1E-05 6.8E-10 54.2 5.7 57 55-120 59-118 (119)
186 COG0517 FOG: CBS domain [Gener 97.9 3.4E-05 7.5E-10 53.7 5.7 52 58-118 63-116 (117)
187 PTZ00314 inosine-5'-monophosph 97.9 0.00011 2.4E-09 64.6 10.0 57 56-121 158-216 (495)
188 COG2905 Predicted signal-trans 97.9 1.8E-05 3.9E-10 68.9 4.8 74 131-206 148-223 (610)
189 cd04634 CBS_pair_21 The CBS do 97.8 6.5E-05 1.4E-09 54.8 6.4 55 56-120 88-142 (143)
190 cd02205 CBS_pair The CBS domai 97.8 7.3E-05 1.6E-09 51.0 6.3 53 59-120 60-112 (113)
191 TIGR03415 ABC_choXWV_ATP choli 97.8 0.00015 3.2E-09 61.8 9.3 110 54-190 271-381 (382)
192 TIGR00393 kpsF KpsF/GutQ famil 97.8 5.1E-05 1.1E-09 61.4 5.5 56 132-189 155-213 (268)
193 cd04638 CBS_pair_25 The CBS do 97.7 0.00011 2.4E-09 50.3 6.1 54 57-120 52-105 (106)
194 TIGR01302 IMP_dehydrog inosine 97.7 9E-05 1.9E-09 64.6 6.5 58 56-122 142-200 (450)
195 COG2239 MgtE Mg/Co/Ni transpor 97.6 0.00013 2.8E-09 63.2 6.0 61 54-123 193-253 (451)
196 TIGR01186 proV glycine betaine 97.4 0.00055 1.2E-08 58.0 7.0 57 58-124 303-359 (363)
197 KOG0476 Cl- channel CLC-2 and 97.4 0.0014 3E-08 59.2 9.4 110 6-122 533-646 (931)
198 COG4175 ProV ABC-type proline/ 97.2 0.00066 1.4E-08 55.8 5.3 112 54-190 271-384 (386)
199 PRK10070 glycine betaine trans 97.1 0.002 4.3E-08 55.3 7.2 59 58-126 338-396 (400)
200 COG4535 CorC Putative Mg2+ and 96.5 0.0012 2.7E-08 51.8 1.5 62 130-191 65-129 (293)
201 KOG2118 Predicted membrane pro 96.3 0.007 1.5E-07 53.4 5.3 127 54-190 201-329 (498)
202 KOG0474 Cl- channel CLC-7 and 96.3 0.0052 1.1E-07 54.6 4.3 55 57-120 690-744 (762)
203 KOG2550 IMP dehydrogenase/GMP 95.6 0.017 3.6E-07 49.1 4.2 57 56-121 170-226 (503)
204 TIGR03415 ABC_choXWV_ATP choli 95.2 0.051 1.1E-06 46.5 6.1 46 74-123 335-380 (382)
205 KOG0475 Cl- channel CLC-3 and 94.7 0.12 2.5E-06 46.3 7.0 56 56-121 638-693 (696)
206 KOG0476 Cl- channel CLC-2 and 92.9 0.16 3.5E-06 46.5 4.5 61 131-193 587-651 (931)
207 COG1125 OpuBA ABC-type proline 92.2 0.26 5.7E-06 39.8 4.5 62 54-120 246-307 (309)
208 COG1125 OpuBA ABC-type proline 91.7 1.6 3.5E-05 35.4 8.4 97 83-187 196-308 (309)
209 COG4175 ProV ABC-type proline/ 90.8 0.72 1.6E-05 38.5 5.8 47 74-123 337-383 (386)
210 cd02958 UAS UAS family; UAS is 63.0 22 0.00047 24.4 4.9 97 81-191 4-110 (114)
211 PRK11388 DNA-binding transcrip 56.5 21 0.00045 32.8 4.9 110 57-180 41-162 (638)
212 COG2216 KdpB High-affinity K+ 53.1 27 0.00058 31.4 4.6 49 151-199 413-462 (681)
213 COG2216 KdpB High-affinity K+ 43.4 30 0.00064 31.1 3.4 39 79-120 411-449 (681)
214 cd02991 UAS_ETEA UAS family, E 40.3 1.2E+02 0.0027 21.1 5.7 97 82-192 5-113 (116)
215 PF14044 NETI: NETI protein 39.1 41 0.00088 20.4 2.6 24 76-101 3-26 (57)
216 PF05198 IF3_N: Translation in 38.3 1E+02 0.0023 19.8 4.7 26 95-122 12-37 (76)
217 cd02958 UAS UAS family; UAS is 38.2 1.1E+02 0.0024 20.8 5.3 63 51-122 37-107 (114)
218 TIGR03278 methan_mark_10 putat 34.2 3.1E+02 0.0068 23.8 8.7 88 95-201 306-401 (404)
219 KOG2118 Predicted membrane pro 28.7 34 0.00073 30.6 1.6 44 131-174 203-247 (498)
220 PF14827 Cache_3: Sensory doma 28.4 57 0.0012 22.5 2.4 18 96-115 92-109 (116)
221 COG0853 PanD Aspartate 1-decar 27.1 52 0.0011 23.4 2.0 26 158-183 2-29 (126)
222 COG0290 InfC Translation initi 26.8 1.4E+02 0.0031 22.6 4.3 25 94-120 17-41 (176)
223 smart00594 UAS UAS domain. 26.5 1.6E+02 0.0035 20.4 4.5 66 49-121 45-120 (122)
224 cd06404 PB1_aPKC PB1 domain is 25.5 90 0.0019 20.6 2.7 26 72-97 50-75 (83)
225 CHL00199 infC translation init 25.4 85 0.0018 24.0 3.0 37 81-118 40-76 (182)
226 smart00481 POLIIIAc DNA polyme 24.4 1.2E+02 0.0025 18.4 3.1 34 148-181 12-46 (67)
227 TIGR00223 panD L-aspartate-alp 24.2 61 0.0013 23.1 1.9 26 158-183 3-30 (126)
228 PF13192 Thioredoxin_3: Thiore 23.7 67 0.0015 20.2 2.0 28 161-188 43-75 (76)
229 PF13098 Thioredoxin_2: Thiore 23.1 1.2E+02 0.0026 20.2 3.3 35 85-121 73-111 (112)
230 TIGR01101 V_ATP_synt_F vacuola 22.4 2.8E+02 0.0062 19.4 6.3 52 105-162 3-54 (115)
231 PRK05449 aspartate alpha-decar 21.6 73 0.0016 22.8 1.9 26 158-183 3-30 (126)
232 cd06259 YdcF-like YdcF-like. Y 21.4 3.1E+02 0.0067 19.4 5.5 42 81-125 21-62 (150)
233 COG0241 HisB Histidinol phosph 20.9 1.6E+02 0.0035 22.5 3.8 56 152-208 35-92 (181)
234 PF03948 Ribosomal_L9_C: Ribos 20.6 2.6E+02 0.0057 18.3 5.2 23 103-125 22-44 (87)
235 PRK00028 infC translation init 20.5 1.3E+02 0.0028 22.8 3.2 39 80-119 34-72 (177)
236 PF02743 Cache_1: Cache domain 20.1 99 0.0021 19.4 2.2 16 97-114 18-33 (81)
No 1
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.85 E-value=8.1e-22 Score=167.70 Aligned_cols=166 Identities=22% Similarity=0.360 Sum_probs=146.6
Q ss_pred hhhHHHHHHhhhcCcccccccccccccccccCCCC---CccccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHH
Q 028491 13 EILKGAILEHHQGRYVVEGRKTCSRFGCVISSSSS---PTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKN 89 (208)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~ 89 (208)
..+|++.|..|+..++.|+.||...++.+.++... ..-.+.+-...+++++..+ +++|++.+|+.+|++.
T Consensus 102 y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~-------~~~v~~~~~i~~aa~k 174 (610)
T COG2905 102 YLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLP-------AVTVSPQASIQDAARK 174 (610)
T ss_pred EecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCC-------CcccCccCcHHHHHHH
Confidence 36899999999999999999999888777652211 1111334456889999988 9999999999999999
Q ss_pred HHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEee
Q 028491 90 MAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVP 169 (208)
Q Consensus 90 m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lp 169 (208)
|.+.|++.+.++ +.++...||||.+|++.++++++.+ ...+|+++|+. |+++++.++.+.+|+-.|.+.+++++|
T Consensus 175 m~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~ 249 (610)
T COG2905 175 MKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLP 249 (610)
T ss_pred HHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceee
Confidence 999999999999 7889999999999999999998865 58899999999 999999999999999999999999999
Q ss_pred eecCc-eeEEEEHHHHHHHHHH
Q 028491 170 VIDGR-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 170 Vvd~~-~vGiit~~dll~~~~~ 190 (208)
|++++ ++|+||.+||++....
T Consensus 250 V~e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 250 VTEDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred eecCCeeeEEeeHHHHHHhhCC
Confidence 99999 9999999999999874
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.84 E-value=3.6e-20 Score=144.02 Aligned_cols=123 Identities=26% Similarity=0.440 Sum_probs=112.0
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
+....+|+++|+++ +.++.+++|+.+|+++|.++++.+.||+ | +++++|++|..|+..++ +++ ..+.
T Consensus 168 siPk~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVv--d-~dk~vGiit~~dI~~ai-a~g--~~~~ 234 (294)
T COG2524 168 SIPKEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVV--D-DDKIVGIITLSDIAKAI-ANG--NLDA 234 (294)
T ss_pred ecCcchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCcee--c-CCceEEEEEHHHHHHHH-HcC--Cccc
Confidence 46678999999999 9999999999999999999999999999 4 45999999999987765 454 3579
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~~~~~ 190 (208)
+|+++|++ +++++..|+.+.+|+++|..+++.+|.|+| ++ ++|+||++|+|+.+..
T Consensus 235 kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 235 KVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred cHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 99999999 999999999999999999999999999999 45 9999999999998864
No 3
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.81 E-value=3.3e-19 Score=129.22 Aligned_cols=122 Identities=25% Similarity=0.431 Sum_probs=110.5
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccch
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRV 134 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v 134 (208)
..+++..+|+.+ ++.+++++++.+++++|+.++++.+||+ ++++++|-||..++.++++..+.+.....+
T Consensus 63 ~~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi---~~~k~VGsItE~~iv~~~le~~e~i~~~~v 132 (187)
T COG3620 63 TRITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRV 132 (187)
T ss_pred ceEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCcee---eCCeeeeeecHHHHHHHHhccccchhhhhH
Confidence 467899999999 9999999999999999999999999999 459999999999999988877666678899
Q ss_pred hhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491 135 AEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 135 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~ 190 (208)
+++|.. ++++++++.++....+++..| .++.|++++ ++|+||+.|+++.+.+
T Consensus 133 r~vM~e--~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 133 REVMGE--PFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred HHHhcC--CCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHHhc
Confidence 999998 899999999999999988876 457788877 9999999999999865
No 4
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.78 E-value=6.9e-18 Score=140.52 Aligned_cols=121 Identities=26% Similarity=0.465 Sum_probs=107.4
Q ss_pred ccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 55 ENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 55 ~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
...+|+++|.+ + ++++++++|+.+|++.|.+++...+||+ |++|+++|+||.+|+.+ +...+......
T Consensus 200 ~~~~V~dim~~~~~-------~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~ 269 (326)
T PRK10892 200 LLLRVSDIMHTGDE-------IPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQA 269 (326)
T ss_pred ccCcHHHHhCCCCC-------CeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccC
Confidence 57889999997 6 8999999999999999999888888989 78899999999999865 44433233457
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA 187 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~ 187 (208)
+++++|.+ ++.++.+++++.+|++.|.+++++++||++++ ++|+||+.|+++.
T Consensus 270 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 270 SIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred CHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 89999998 89999999999999999999999999999988 9999999999874
No 5
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.78 E-value=3.1e-18 Score=135.70 Aligned_cols=130 Identities=25% Similarity=0.442 Sum_probs=114.4
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH----hcCCC
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV----GQGRS 128 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~----~~~~~ 128 (208)
.....+..++|+++ ++++++++++.+|.++|.++++..+||+ |++.+++|+||.+|++...- +.-+.
T Consensus 241 ~~~~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~ 311 (382)
T COG3448 241 RMGELTCADIMSRD-------VVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRF 311 (382)
T ss_pred HhccccHHHhcCcc-------ceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhc
Confidence 45578999999999 9999999999999999999999999999 89999999999999886311 11112
Q ss_pred CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhH
Q 028491 129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQK 193 (208)
Q Consensus 129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~ 193 (208)
.....++.+|++ ++.++.++++..+++..|.+.+.|++||+|+. ++||||++|++..++.+..
T Consensus 312 ~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 312 LRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred cCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHHH
Confidence 345689999998 89999999999999999999999999999987 9999999999999987643
No 6
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.76 E-value=2.2e-17 Score=116.44 Aligned_cols=109 Identities=36% Similarity=0.570 Sum_probs=97.2
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+.++.+++++.++++.|.+++.+.+||+ +++ ++++|+++..|+++++..+.......++.++|.. ++.+++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMD 78 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCC
Confidence 7889999999999999998999999999 676 8999999999998766654333345689999987 7999999999
Q ss_pred HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
+.++++.|.+++.+.+||+|++ ++|+|+..|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhc
Confidence 9999999999999999999888 999999999975
No 7
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.76 E-value=3.7e-17 Score=115.47 Aligned_cols=109 Identities=20% Similarity=0.354 Sum_probs=96.3
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+++...+||+ |++++++|+|+.+|+++.+..........++.++|.. ++.++.+++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 78 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL 78 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence 6789999999999999999999999999 7889999999999988755431223446789999987 89999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.+|++.|.+++.+++||+|+ + ++|+|+..|+++
T Consensus 79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999986 5 999999999875
No 8
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.74 E-value=1e-16 Score=112.35 Aligned_cols=109 Identities=46% Similarity=0.726 Sum_probs=96.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.++.++.++.+.|.+.+++.+||+ +++++++|+++.+|+++++..........++.++|.+ ++.++.+++++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 78 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTV 78 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcH
Confidence 7889999999999999999999999999 7779999999999998766544322235689999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||++++ ++|+||..|+++
T Consensus 79 ~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 112 (113)
T cd04623 79 DEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence 999999999999999999888 999999999976
No 9
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.74 E-value=5.5e-17 Score=114.12 Aligned_cols=106 Identities=18% Similarity=0.291 Sum_probs=93.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.+|.+.|.+++.+.+||+ |++++++|+|+..|+.+. ..+ .....++.++|.. ++.++.+++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~-~~~--~~~~~~v~~~~~~--~~~~v~~~~~l 75 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEI-GPN--DYETLKVCEVYIV--PVPIVYCDSKV 75 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhh-ccc--cccccChhheeec--CCcEECCCCcH
Confidence 7889999999999999998999999999 788999999999998752 111 1234579999987 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.+|++.|.+++.+.+||+|+ + ++|+||..|+++
T Consensus 76 ~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 76 TDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999999987 5 999999999986
No 10
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.73 E-value=9e-17 Score=133.53 Aligned_cols=121 Identities=26% Similarity=0.389 Sum_probs=106.4
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~ 135 (208)
..+|+++|.++.+ ++++++++|+.+|.+.|.+++...+||+ |++|+++|+|+..|+.+.+.... ....++.
T Consensus 196 ~~~V~~im~~~~~-----~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~~~~--~~~~~v~ 266 (321)
T PRK11543 196 LNKVHHLMRRDDA-----IPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLVGGG--ALTTPVN 266 (321)
T ss_pred HhHHHHHhccCCC-----CcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHhCCC--CcCCcHH
Confidence 6899999998632 7889999999999999998889999999 78899999999999876544322 2356799
Q ss_pred hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHH
Q 028491 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRA 187 (208)
Q Consensus 136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~ 187 (208)
++|.+ ++.++.+++++.+|++.|.+++..++||+|+ + ++|+||+.|++++
T Consensus 267 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 267 EAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred HhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 99988 8999999999999999999999999999986 4 9999999999864
No 11
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.73 E-value=1.8e-16 Score=112.86 Aligned_cols=109 Identities=16% Similarity=0.301 Sum_probs=89.7
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh------hccCCCeEEE
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI------MTDENKLITL 147 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i------m~~~~~~~~v 147 (208)
+.++++++++.+|++.|.+++.+.+||+ +++++++|+++.+||+..+..+.......++.+. |.. ++.++
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 78 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTC 78 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEE
Confidence 7889999999999999999999999999 7789999999999988654322211112234432 223 57899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 148 PSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 148 ~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.+++++.++++.|.+++.+.+||+|+ + ++|+||+.|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999987 4 999999999986
No 12
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=1.9e-16 Score=111.31 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=96.1
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC-CCCccchhhhhccCCCeEEEcCCCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR-SPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~-~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+.++++++++.++.+.|.+++.+.+||+ +++++++|+|+..++++.+..... .....++.++|.. ++.++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDS 78 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCc
Confidence 7889999999999999998888999999 788999999999998876654321 1235689999987 7899999999
Q ss_pred HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
+.++++.|.+++.+.+||+|++ ++|+||..|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 9999999999999999999889 999999999975
No 13
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.71 E-value=9.2e-17 Score=131.46 Aligned_cols=130 Identities=15% Similarity=0.370 Sum_probs=111.0
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
+...+|+++|++..+ ++++++++|+.++.+.+.+++++++||+ +++ ++++|+|+.+|++..+ .... ...
T Consensus 64 l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~-~~~~--~~~ 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFM-RSDA--EAF 133 (292)
T ss_pred cCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHh-hccC--CcC
Confidence 778899999999433 8999999999999999999999999999 554 7899999999988643 2221 234
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGEL 196 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~ 196 (208)
.+.++|.+ ++++++++++.++++.|.+++.+.+||+|+. ++|+||..|+++.+.+....+.
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~ 196 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY 196 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence 58899876 5689999999999999999999999999974 9999999999999998765443
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.70 E-value=4.7e-16 Score=110.44 Aligned_cols=110 Identities=22% Similarity=0.449 Sum_probs=94.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++++.|..++..++||+ |++++++|+|+..||++...... .....+++++|...+++.++++++++
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhCCCCCcEEECCCCcH
Confidence 6889999999999999999999999999 77889999999999888665332 23466788999732258899999999
Q ss_pred HHHHHHHHhcCCCEeeeecC----c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG----R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~----~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+|+ + ++|+||+.|+++
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999999999999974 5 999999999875
No 15
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.70 E-value=2.3e-16 Score=140.46 Aligned_cols=129 Identities=13% Similarity=0.218 Sum_probs=113.2
Q ss_pred cccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCC
Q 028491 50 EEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSP 129 (208)
Q Consensus 50 ~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~ 129 (208)
+...+...+++|+|+++ +.++++++++.++.+.|.+++.+.+||+ |++++++|+|+.+|+.+.+..+. ..
T Consensus 440 ~~~~L~~~~V~dim~~~-------~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~ 509 (574)
T PRK01862 440 ERERLRTTQMRELIQPA-------QTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DT 509 (574)
T ss_pred hhhHHhhCcHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-cc
Confidence 34557789999999998 8899999999999999999999999999 78899999999999887554333 22
Q ss_pred CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHHHHHH
Q 028491 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~~~~~ 190 (208)
...++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+ + ++|+||+.|+++.+.+
T Consensus 510 ~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 510 TDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 34689999988 7899999999999999999999999999975 4 9999999999999865
No 16
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.70 E-value=4.3e-16 Score=113.64 Aligned_cols=109 Identities=24% Similarity=0.443 Sum_probs=95.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCC----------------------Cc
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSP----------------------KY 131 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~----------------------~~ 131 (208)
++++++++++.++.+.|.+++.+.+||+ |++++++|+++..|+++.+....... ..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 7889999999999999999999999999 78899999999999887543221110 14
Q ss_pred cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.+++++|.+ ++..+.+++++.++++.|.+.+.+++||++++ ++|+||..|+++
T Consensus 81 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 579999987 78899999999999999999999999999888 999999999986
No 17
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.70 E-value=6.8e-16 Score=108.22 Aligned_cols=108 Identities=31% Similarity=0.539 Sum_probs=92.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++++.|.+++...++|. + +++++|+++..|+++++..........++.++|.. ++.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 77 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSI 77 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCH
Confidence 7889999999999999988887777777 3 58999999999988765533222235689999987 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++++.|.+++..++||++++ ++|+||..|+++
T Consensus 78 ~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 78 DEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 999999999999999999988 999999999986
No 18
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=9.4e-16 Score=107.84 Aligned_cols=107 Identities=23% Similarity=0.420 Sum_probs=94.1
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++++.|.+.+...+||+ +++++++|+++.+|+++.+.... ....++.++|.. ++.++++++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~~~--~~~~v~~~~~l 77 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALLKGL--SLDDPVSEVMNR--NPITAKVGSSR 77 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHhcCC--CcCCCHHHhhcC--CCEEEcCCCCH
Confidence 6789999999999999999999999999 78899999999999877554322 235679999987 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+++ + ++|+||..|++.
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 78 EEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999999985 4 999999999874
No 19
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.69 E-value=2e-16 Score=128.24 Aligned_cols=123 Identities=26% Similarity=0.396 Sum_probs=112.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~ 135 (208)
-..|+|+|+|..+ ..++.+++++.+..++..+++.+++||+ |+..+++|+|+.+|+... .++.++.
T Consensus 187 I~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~~kvvGvVt~rDv~~~-------~~~t~ie 252 (432)
T COG4109 187 IITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSRFPVV--NRSMKVVGVVTMRDVLDK-------KPSTTIE 252 (432)
T ss_pred eeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCcccee--cccceEEEEEEehhhhcC-------CCCccHH
Confidence 4578999997744 7899999999999999999999999999 899999999999997653 5688999
Q ss_pred hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHH
Q 028491 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKG 194 (208)
Q Consensus 136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~ 194 (208)
.+|++ +|+++.+.+++..+.+.|...++..+||++++ ++|+||+.|+++.+...+.+
T Consensus 253 KVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q 311 (432)
T COG4109 253 KVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ 311 (432)
T ss_pred HHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC
Confidence 99999 99999999999999999999999999999988 99999999999999865543
No 20
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=1.1e-15 Score=107.14 Aligned_cols=109 Identities=34% Similarity=0.606 Sum_probs=95.0
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
++.++++++++.++++.|.+.+.+.+||+ ++ ++++|+++..|+++.+..........++.++|.+ ++.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 76 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNAS 76 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCC
Confidence 37889999999999999999899999999 54 4999999999998866544322345689999987 7899999999
Q ss_pred HHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
+.++++.|.+++.+.+||+|++ ++|+|+..|+++
T Consensus 77 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 77 LNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 9999999999999999999988 999999999874
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.69 E-value=7.6e-16 Score=108.64 Aligned_cols=108 Identities=23% Similarity=0.414 Sum_probs=94.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+.+.+.+||+ |++++++|+++.+||++.+.. .......+++++|.. ++.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~l 77 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALEA-DEAGEPSAVDEVATP--PLLTVHPDEPL 77 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHhc-ccccccccHHHhccC--CceEECCCCCH
Confidence 6788999999999999999999999999 788999999999998875543 222234568999987 89999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+.+||+|+ + ++|+||..|+++
T Consensus 78 ~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 78 AHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 99999999999999999975 5 999999999986
No 22
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=9.2e-16 Score=107.46 Aligned_cols=107 Identities=20% Similarity=0.391 Sum_probs=93.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++++.|.+++.+.+||+ +++++++|+++..|++.... ... ....++.++|.+ ++.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~l 76 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FES-FLEKKVFNIVSQ--DVFYVNEEDTI 76 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hcc-cccCcHHHHhcC--CcEEEcCCCcH
Confidence 7889999999999999999999999999 77899999999999876432 221 124579999987 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.+++..|.+++.+.+||++++ ++|+||..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 77 DEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 999999999999999999888 999999999874
No 23
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.69 E-value=7.4e-16 Score=109.99 Aligned_cols=110 Identities=31% Similarity=0.536 Sum_probs=94.8
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------CCCccchhhhhccCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------SPKYTRVAEIMTDENK 143 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~ 143 (208)
++.++++++++.++.+.|.+.+++++||+ +++++++|+++..||+..+..... .....++.++|.. +
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 78 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--P 78 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--C
Confidence 38899999999999999999999999999 677999999999998765432221 0124578999987 7
Q ss_pred eEEEcCCCCHHHHHHHHHhcCCCEeeeec-Cc-eeEEEEHHHHHH
Q 028491 144 LITLPSDANILHAMQLMTDKHIRHVPVID-GR-IVGMISIVDVVR 186 (208)
Q Consensus 144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~-~vGiit~~dll~ 186 (208)
+.++.+++++.++++.|.+++.+.+||+| ++ ++|+||..|+++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 79 VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 99999999999999999999999999998 45 999999999986
No 24
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.69 E-value=1.3e-15 Score=106.66 Aligned_cols=108 Identities=31% Similarity=0.436 Sum_probs=94.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
++.+++++++.++.+.|.+.+...+||+ |+ ++++|+++..|++..+.... .....++.++|.+ ++..+++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~l 76 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVLLDG-LPSSTPVGEIATF--PLITVDPDDFL 76 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHHcCC-CCCCCCHHHHhCC--CcEEECCCCcH
Confidence 6789999999999999998899999999 66 88999999999886543322 2346789999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA 187 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~ 187 (208)
.++++.|.+++.+.+||++++ ++|+||..|++++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~~ 111 (111)
T cd04589 77 FNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLSF 111 (111)
T ss_pred HHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhcC
Confidence 999999999999999999988 9999999999863
No 25
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.69 E-value=4.1e-16 Score=107.63 Aligned_cols=91 Identities=18% Similarity=0.354 Sum_probs=82.1
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
++++++++|+.+|.+.|.+++.+++||+ |+ +++++|+||..|+.+.+. +.++.++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~~--------------------~~~v~~~~~ 60 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILILR--------------------LVSIHPERS 60 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhee--------------------eEEeCCCCc
Confidence 7899999999999999999999999999 66 489999999999875311 668999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~ 186 (208)
+.+|++.|.+++++++||+|+ + ++|+||.+|++.
T Consensus 61 l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 61 LFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999999999999984 5 999999999975
No 26
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.68 E-value=3.1e-16 Score=112.70 Aligned_cols=110 Identities=11% Similarity=0.187 Sum_probs=94.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++|+.++++.|.+++..++||+ |++++++|+++..|+++.+..+.. ....+++++|.+ ++.++.+++++
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~--~~~~v~~~~~~ 78 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYK--QFKRVNKNDTL 78 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhc--cceecCCCCCH
Confidence 7889999999999999999999999999 788999999999998876654432 357899999998 89999999999
Q ss_pred HHHHHHHH---------hcCCCEeeeecC-c-eeEEEEHHHHHHHH
Q 028491 154 LHAMQLMT---------DKHIRHVPVIDG-R-IVGMISIVDVVRAV 188 (208)
Q Consensus 154 ~~a~~~~~---------~~~~~~lpVvd~-~-~vGiit~~dll~~~ 188 (208)
.++.+++. +.+.+.+||+++ + ++|+||..|+++++
T Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 79 GKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 99999653 335677888886 4 99999999999863
No 27
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.68 E-value=4.3e-16 Score=134.87 Aligned_cols=121 Identities=25% Similarity=0.455 Sum_probs=107.6
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
.+...+++++|.++ ++++++++|+.++.+.|.+++++.+||+ |++++++|+|+.+||... ....
T Consensus 85 ~l~~VKv~~iMi~~-------pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~~-------~~~~ 148 (479)
T PRK07807 85 VVAWVKSRDLVFDT-------PVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAGV-------DRFT 148 (479)
T ss_pred HHhhcccccccccC-------CeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhcC-------ccCC
Confidence 35567788999888 9999999999999999999999999999 788999999999997431 1246
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~ 191 (208)
+++++|+. +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..||++.....
T Consensus 149 ~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 149 QVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 79999998 8999999999999999999999999999996 4 99999999999977654
No 28
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=8.3e-16 Score=108.36 Aligned_cols=107 Identities=21% Similarity=0.391 Sum_probs=91.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC----ccchhhhhccCCCeEEEcC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK----YTRVAEIMTDENKLITLPS 149 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~----~~~v~~im~~~~~~~~v~~ 149 (208)
++++++++|+.++.+.|.+++.+.+||+ |++++++|+++.+|+++++........ ..++.++|.+ ++.++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 78 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIID 78 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecC
Confidence 7899999999999999999999999999 788999999999998876543221111 4679999988 7999999
Q ss_pred CCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 150 DANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 150 ~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++++.++++.|.+.+ .+||+++ + ++|+||..|+++
T Consensus 79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 999999999998865 5899986 4 999999999986
No 29
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1.3e-15 Score=106.64 Aligned_cols=106 Identities=24% Similarity=0.426 Sum_probs=93.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+.+...+||+ +++++++|+|+..++.+.+.... ...++.++|.. ++.++++++++
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~~~~--~~~~i~~~~~~ 75 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEGG---PDAPVRGVMRR--DFPTVSPSATL 75 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHHhcC--CCcEECCCCcH
Confidence 7889999999999999988889999999 77799999999999886554322 34689999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++...+||+++ + ++|++|..|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 76 DAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999987 5 999999999875
No 30
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1e-15 Score=110.83 Aligned_cols=109 Identities=34% Similarity=0.568 Sum_probs=94.6
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCc--------------------c
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKY--------------------T 132 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~--------------------~ 132 (208)
++.++++++++.++.+.|.+.+.+++||+ |++++++|+++..+|+..+..... ... .
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGKG-LFYVTLLYSVIFLDESKIKKLLGK 78 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccCC-cccccccccccccchHHHHHHcCC
Confidence 37889999999999999998899999999 788999999999998875543221 111 2
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
++.++|.+ ++..+.+++++.+++..|.+.+.+.+||+|++ ++|++|..|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 78899987 78999999999999999999999999999889 999999999986
No 31
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.68 E-value=1.3e-15 Score=131.76 Aligned_cols=128 Identities=18% Similarity=0.359 Sum_probs=111.4
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-----cCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-----HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR 127 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~ 127 (208)
.++..+++++|+++ ++++++++|+.++.+.|++ ++...+||+ |++++++|+|+.+|++.+
T Consensus 127 ~~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a------ 191 (449)
T TIGR00400 127 SYSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA------ 191 (449)
T ss_pred CCCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC------
Confidence 46678999999988 9999999999999999975 456789999 788999999999997642
Q ss_pred CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHH
Q 028491 128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKR 198 (208)
Q Consensus 128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~ 198 (208)
.++.+++++|.+ +++++++++++.+|++.|.+++...+||+|++ ++|+||..|+++.+.++..++..+
T Consensus 192 -~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~~ed~~~ 261 (449)
T TIGR00400 192 -KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEATEDFYM 261 (449)
T ss_pred -CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhhHHHHHH
Confidence 235689999988 78999999999999999999999999999864 999999999999998876654443
No 32
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.67 E-value=2.8e-15 Score=105.09 Aligned_cols=107 Identities=39% Similarity=0.564 Sum_probs=94.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+.+...+||+ +++++++|+++..|+++.+.... ....++.++|.. ++.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~~~~--~~~~v~~~~~~ 76 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVAAGI--DLDTPVSEIMTR--DLVTVDPDEPV 76 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHhccC--CCccCHHHhccC--CCEEECCCCcH
Confidence 6789999999999999999999999999 77899999999999887654332 235689999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++...+||+++ + ++|++|..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 77 AEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999999987 5 999999999875
No 33
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=8.6e-16 Score=111.63 Aligned_cols=110 Identities=27% Similarity=0.499 Sum_probs=94.7
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------------------CCCc
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------------------SPKY 131 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------------------~~~~ 131 (208)
++.++.+++++.++.+.|.++++.++||+ |++++++|+|+..|+++.+..... ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 37889999999999999999999999999 788999999999998764322100 0134
Q ss_pred cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++.++|.+ ++.++.+++++.+++..|.+.+.+++||+|++ ++|+||+.|+++
T Consensus 81 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 678999987 79999999999999999999999999999977 999999999875
No 34
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1e-15 Score=107.84 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=91.7
Q ss_pred eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+.++++++++.++.+.|.+++ ...+||+ |++++++|+|+..||+.... +. ....++.++|.+..+++++.++++
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~--~~~~~v~~~~~~~~~~~~v~~~~~ 77 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-SQ--WAQTTVIQVMTPAAKLVTVLSEES 77 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-hh--ccccchhhhhcccccceEECCCCc
Confidence 788999999999999997664 8899999 78899999999999887543 22 225678999975224679999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+.+|++.|.+++.+++||+|+ + ++|+|+..|+++
T Consensus 78 l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 78 LAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999999987 5 999999999875
No 35
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1.9e-15 Score=105.55 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=92.2
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+++...+||+ |++++++|+++..+++.. ....+++++|.. ++.++++++++
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~v~~~~~l 72 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTK--NPITVNPKTSV 72 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcC--CCeEECCCCCH
Confidence 7899999999999999999999999999 788999999999998642 135689999987 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+.+||+++ + ++|++|..|+++
T Consensus 73 ~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 73 ASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999985 4 999999999975
No 36
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.67 E-value=1.6e-15 Score=106.45 Aligned_cols=109 Identities=16% Similarity=0.290 Sum_probs=95.2
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+++++.+++++.++.+.|.+.+.+.+||+ +++++++|+|+..|+++.+ .+.......++.++|.+ ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~-~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 76 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREIL-FDPSLYDLVVASDIMTK--PPVVVYPEDS 76 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHH-hcccccccEEHHHhccC--CCcEEcCCCC
Confidence 37889999999999999999999999999 7788999999999987654 33322223789999988 7999999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~ 186 (208)
+.++++.|...+.+.+||+++ + ++|+++..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 77 LEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 999999999999999999987 5 999999999875
No 37
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=2.4e-15 Score=105.47 Aligned_cols=108 Identities=33% Similarity=0.650 Sum_probs=93.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+++..++||+ ++ ++++|+++..|++.+....+......++.++|.. .+.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 77 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDV 77 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCH
Confidence 7889999999999999999999999999 56 9999999999987544444433333459999987 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|...+.+++||+++ + ++|+|+..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999987 5 999999999975
No 38
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=2.6e-15 Score=104.98 Aligned_cols=105 Identities=25% Similarity=0.464 Sum_probs=93.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+++++.++++.++.+.|.+++.+++||+ ++ ++++|+++..|+.+.+ ... ....++.++|.. ++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~--~~~~v~~~~~l 75 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMST--DVVTVPPDTPL 75 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcC--CCEEECCCCcH
Confidence 7889999999999999998899999999 66 9999999999987643 332 246789999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||++++ ++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 76 SEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 999999999999999999977 999999999875
No 39
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.67 E-value=3e-16 Score=134.05 Aligned_cols=129 Identities=14% Similarity=0.296 Sum_probs=110.7
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
.+.+.+|+++|+|..+ +++++.++|+.++.+.+.+++++++||++ ++.++++|+|+.+|++..+ .. ...
T Consensus 187 ~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~-~~----~~~ 255 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHL-NK----KNF 255 (408)
T ss_pred ccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHh-cc----CCC
Confidence 4678899999998534 89999999999999999999999999994 2347899999999988642 11 234
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHhhHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQQKGE 195 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~~~~~ 195 (208)
++.++|.+ +.++++++++.++++.|++++.+.++|+|+ + ++|+||.+|+++.+.++..++
T Consensus 256 ~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred CHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence 67888865 789999999999999999999999999998 4 999999999999998776544
No 40
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.67 E-value=3e-15 Score=104.78 Aligned_cols=107 Identities=37% Similarity=0.680 Sum_probs=94.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+++.+.+||+ ++ ++++|+++..+++..+..... ....++.++|.. ++.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~~~~--~~~~v~~~~~l 76 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEVMTA--PPITIPPDATV 76 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHHhCC--CCeEECCCCcH
Confidence 7889999999999999998889999999 55 999999999998765544332 234679999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||++++ ++|++|..|+++
T Consensus 77 ~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 77 FEALLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 999999999999999999888 999999999985
No 41
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.67 E-value=2.1e-15 Score=105.81 Aligned_cols=108 Identities=30% Similarity=0.542 Sum_probs=93.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+++.+.+||+ ++ ++++|+|+..|++..+...+......++.++|.+ ++.++.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l 77 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPV 77 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCH
Confidence 6789999999999999998899999999 56 9999999999987655544322222689999987 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+++ + ++|+|+..|++.
T Consensus 78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999987 5 999999999875
No 42
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.1e-15 Score=108.46 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=93.1
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC------------CCCCccchhhhhccC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG------------RSPKYTRVAEIMTDE 141 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~------------~~~~~~~v~~im~~~ 141 (208)
+.++.+++++.++.+.|.+.+.+.+||+ +++++++|+++.+|+...+.... ......++.++|..
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS- 79 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence 7789999999999999999999999999 78899999999999876543210 01224578999987
Q ss_pred CCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC---c-eeEEEEHHHHHH
Q 028491 142 NKLITLPSDANILHAMQLMTDKHIRHVPVIDG---R-IVGMISIVDVVR 186 (208)
Q Consensus 142 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~-~vGiit~~dll~ 186 (208)
+++++.+++++.+++..|.+.+.+.+||+++ + ++|+||..|+++
T Consensus 80 -~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 -PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 7999999999999999999999999999954 5 999999999875
No 43
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2e-15 Score=107.92 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=89.3
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCC--------CccchhhhhccCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSP--------KYTRVAEIMTDENK 143 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~--------~~~~v~~im~~~~~ 143 (208)
++.++.+++++.++++.|.+.+..++||+ |++ ++++|+|+..|+++.+....... ....+.++|.. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D 77 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence 37889999999999999998889999999 676 89999999999887654321110 00112346666 7
Q ss_pred eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHH
Q 028491 144 LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVV 185 (208)
Q Consensus 144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll 185 (208)
+.++.+++++.+|++.|.+++.+++||+|+ + ++|+||..|+-
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 899999999999999999999999999986 4 99999999974
No 44
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=5.6e-15 Score=103.20 Aligned_cols=105 Identities=29% Similarity=0.453 Sum_probs=92.4
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
++.++.+++++.++.+.|.+++.+.+||+ +++++++|+++..++++.+.. . ..++.++|.. ++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~--~~~~v~~~~~ 73 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTR--NVITATPDEP 73 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCC--CCeEECCCCc
Confidence 37889999999999999999999999999 778999999999998765432 2 2358999977 7899999999
Q ss_pred HHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
+.++++.|.+++.+.+||++++ ++|+|++.|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 74 IDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999999864 999999999965
No 45
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.66 E-value=2.5e-15 Score=106.91 Aligned_cols=109 Identities=30% Similarity=0.517 Sum_probs=94.7
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC--------CCccchhhhhccCCCeE
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS--------PKYTRVAEIMTDENKLI 145 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~--------~~~~~v~~im~~~~~~~ 145 (208)
+.++.+++++.++.+.|.+.+++.+||+ +++++++|+++..++++.+...... ....++.++|.. ++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVL 78 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCe
Confidence 7889999999999999999999999999 7779999999999988754322211 135678999987 799
Q ss_pred EEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 146 TLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++.+++++.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999988 5 999999999985
No 46
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=3.7e-15 Score=104.61 Aligned_cols=108 Identities=26% Similarity=0.438 Sum_probs=94.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+..+.+++++.++++.|.+.+.+.+||+ |++++++|+++.+|+++.+.... .....++.++|.. ++.++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~l 77 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALESE-ELKDAKVREVMNS--PVITIDANDSI 77 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccC--CceEECCCCcH
Confidence 5778999999999999999999999999 77899999999999876544332 2345689999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
.++++.|.+++.+.+||++++ ++|++|..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 78 AKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999864 999999999975
No 47
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.6e-15 Score=107.87 Aligned_cols=109 Identities=27% Similarity=0.390 Sum_probs=89.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH-----HHhcCCCCCccchhhhhccCCCeEE--
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK-----IVGQGRSPKYTRVAEIMTDENKLIT-- 146 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~-----~~~~~~~~~~~~v~~im~~~~~~~~-- 146 (208)
+.++.+++++.++++.|.+.+...+||+ +++++++|+++..|+.+. +..........+++++|.+ ++..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~ 78 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKA 78 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhcc
Confidence 6889999999999999998999999999 778999999999998752 2222122345779999976 4433
Q ss_pred E----cCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHH
Q 028491 147 L----PSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVR 186 (208)
Q Consensus 147 v----~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~ 186 (208)
+ .+++++.++++.|.+++.+.+||+|+ + ++|+||..|+++
T Consensus 79 ~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 79 LDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3 36889999999999999999999985 5 999999999975
No 48
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=3.1e-15 Score=106.87 Aligned_cols=109 Identities=28% Similarity=0.443 Sum_probs=93.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCC----------CCccchhhhhccCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRS----------PKYTRVAEIMTDEN 142 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~----------~~~~~v~~im~~~~ 142 (208)
+.++.++.++.++.+.|.+.+...+||+ +++ ++++|+|+..|++..+...... ....++.++|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR-- 78 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence 7889999999999999999999999999 666 9999999999988654322110 123578899987
Q ss_pred CeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 143 KLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++.++++++++.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 7999999999999999999999999999987 6 999999999986
No 49
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.8e-15 Score=107.66 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=89.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc-------------hhhhhcc
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR-------------VAEIMTD 140 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~-------------v~~im~~ 140 (208)
++++++++++.++++.|.+++.+.+||+ |++++++|+++..|+++...... .....+ ..+.|..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccC
Confidence 7889999999999999999999999999 78899999999999876542221 111111 2235555
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 141 ENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 141 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++.++++++++.+|++.|.+++.+++||+|+ + ++|+||..|+++
T Consensus 80 --~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 --PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred --CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 7899999999999999999999999999987 4 999999999975
No 50
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.65 E-value=5.7e-15 Score=102.48 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=90.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.+++++.++.+|++.|.+++...+||+ +++|+++|+++..|+++.. ..++.++|.+ ++.++.+++++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~~--------~~~~~~~~~~--~~~~~~~~~~~ 70 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARAS--------GGCCGDHAEP--FKVTVSVDDDL 70 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHhc--------ccchhhhccc--CCEEECCCCCH
Confidence 7789999999999999998999999999 7789999999999987631 2358889887 67889999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
.++++.|.+++...+||+|++ ++|+|+..|+++
T Consensus 71 ~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 71 RIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999874 999999999875
No 51
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=5.3e-15 Score=102.38 Aligned_cols=100 Identities=33% Similarity=0.517 Sum_probs=90.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+++...+||+ + +++++|+++..+++.. ....++.++|.+ ++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l 70 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTR--EVVTISPEASL 70 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccC--CCEEECCCCCH
Confidence 6789999999999999998898999999 5 5899999999998753 124579999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVV 185 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll 185 (208)
.++++.|.+++...+||+|++ ++|+||..|++
T Consensus 71 ~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 71 LEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred HHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 999999999999999999989 99999999987
No 52
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.64 E-value=7.3e-15 Score=102.80 Aligned_cols=105 Identities=17% Similarity=0.367 Sum_probs=90.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+.++++++++.++.+.|.+.+.+.+||+ +++ ++++|+++..++++... +... ..++.+++. ++.++.++++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~~--~~~~~~~~~---~~~~v~~~~~ 74 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGEE--DLDLRDLLR---PPLFVPESTP 74 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCCC--cCCHHHHhc---CCeecCCCCc
Confidence 7889999999999999999899999999 677 89999999999887543 3221 256777764 4789999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+.++++.|.+++.+++||+++ + ++|+||+.|+++
T Consensus 75 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 75 LDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999987 5 999999999875
No 53
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=2.4e-15 Score=103.28 Aligned_cols=92 Identities=25% Similarity=0.473 Sum_probs=83.1
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
+++++.+++++.+|++.|.+++++.+||+ |++++++|+++..|++.. . .+.+++++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~-------~-------------~~~~v~~~~~ 59 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK-------S-------------EVVTATKRTT 59 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC-------C-------------CcEEecCCCC
Confidence 47889999999999999999999999999 788999999999997652 0 1668999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+.++++.|.+++.+++||+++ + ++|+||.+|+++
T Consensus 60 l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 60 VSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999999987 5 999999999985
No 54
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.64 E-value=9.7e-15 Score=101.99 Aligned_cols=105 Identities=26% Similarity=0.472 Sum_probs=92.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+.+++++||+ ++ ++++|+++..|+++.. ..+. ...++.++|.. ++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~~--~~~~v~~~~~~--~~~~v~~~~~~ 74 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARGL--ELAKVKDVMTK--DVITIDEDEQL 74 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hccc--cccCHHHHhcC--CceEECCCCCH
Confidence 7889999999999999999999999999 66 8999999999988753 3322 23679999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+.+.+.+||+++ + ++|+|+..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 75 YDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999999987 5 999999999875
No 55
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=9.1e-15 Score=103.02 Aligned_cols=107 Identities=30% Similarity=0.545 Sum_probs=90.0
Q ss_pred eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC--
Q 028491 74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD-- 150 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~-- 150 (208)
+.++++++++.++.+.|.+++ ...+||+ + +++++|+++..|+++.+. ........++.++|.. ++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~ 76 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESEI 76 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEecccc
Confidence 678999999999999998888 6677877 4 589999999999886443 3222234689999987 78888887
Q ss_pred CCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 151 ANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 151 ~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+++.+|++.|.+++.+.+||+|+ + ++|+||+.|+++
T Consensus 77 ~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 77 QDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 78999999999999999999986 4 999999999986
No 56
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.64 E-value=4.4e-15 Score=103.07 Aligned_cols=99 Identities=18% Similarity=0.297 Sum_probs=88.6
Q ss_pred EEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHH
Q 028491 75 LCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANIL 154 (208)
Q Consensus 75 ~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~ 154 (208)
.++.+++++.++.+.|.+.+.+.+||+ ++ ++++|+++..|++++ ...++.++|.. ++.+++++.++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~--~~~~v~~~~~l~ 70 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVR--GIPYVRLTSTAE 70 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhc--CCcEEcCCCCHH
Confidence 568999999999999999999999999 66 999999999998753 12457888877 789999999999
Q ss_pred HHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 155 HAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 155 ~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
+++..|.+++.+.+||++++ ++|+||..|+++
T Consensus 71 ~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~ 103 (104)
T cd04594 71 EAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence 99999999999999999988 999999999875
No 57
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.64 E-value=9.4e-15 Score=101.72 Aligned_cols=103 Identities=23% Similarity=0.409 Sum_probs=91.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+..++++.++.++.+.|.+.+..++||+ +++++++|+++..|++... . ...++.++|.. .+.++++++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~-~-----~~~~v~~~~~~--~~~~v~~~~~~ 73 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY-K-----EAKSLEDIMLE--DVFTVQPDASL 73 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh-h-----cCCcHhHhhcC--CceEECCCCcH
Confidence 7789999999999999999999999999 7789999999999987642 1 23578899987 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+++ + ++|++|.+|+++
T Consensus 74 ~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 74 RDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999999999986 4 999999999874
No 58
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.64 E-value=4e-15 Score=129.52 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=102.6
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
..|+++|...... ++++++++|+.+|++.|.+++++.+||+ |+ +++++|+||.+||... . ...+.+
T Consensus 94 ~kVk~~~~g~i~~----~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~---~--~~~~~~ 162 (502)
T PRK07107 94 RRVKNYKAGFVVS----DSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS---R--MSLDTK 162 (502)
T ss_pred HHHHHHhcCCcCC----CCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc---c--cCCCCC
Confidence 4678888643121 5789999999999999999999999999 54 5899999999997532 1 134678
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV 188 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~ 188 (208)
++++|++.++++++++++++.+|++.|.+++++.+||+|++ ++|+||..|+++..
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 99999864478999999999999999999999999999964 99999999999975
No 59
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.63 E-value=1.1e-14 Score=102.10 Aligned_cols=108 Identities=31% Similarity=0.486 Sum_probs=93.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+.+.+.+||+ +++++++|+++..++++.+. ........++.++|.+ ++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~~ 78 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDALA 78 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCcH
Confidence 6788999999999999988888999999 77899999999999876543 3322334579999988 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+++ + ++|+|+..|+++
T Consensus 79 ~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 79 AEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999984 5 999999999975
No 60
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=7e-15 Score=104.45 Aligned_cols=108 Identities=29% Similarity=0.475 Sum_probs=93.2
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------CCCccchhhhhccCCCe
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---------SPKYTRVAEIMTDENKL 144 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---------~~~~~~v~~im~~~~~~ 144 (208)
++++.+++++.++.+.|.+++...+||+ ++ ++++|+++..++++.+..... .....++.++|.. ++
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PV 77 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--Cc
Confidence 6789999999999999999999999999 55 999999999998865432211 1124578899987 79
Q ss_pred EEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 145 ITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.++.+++++.+++..|.+.+.+.+||+|++ ++|+|+..|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 78 ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred eEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 999999999999999999999999999888 999999999985
No 61
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.63 E-value=1.7e-14 Score=100.76 Aligned_cols=106 Identities=36% Similarity=0.627 Sum_probs=92.7
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++++++++.++.+.|.+++...+||+ ++ ++++|+++.+||++... .... ...+++++|.. ++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~--~~~~~~~~~~l 75 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS--PLLTVPADTSL 75 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC--CceEECCCCCH
Confidence 6789999999999999998889999999 55 89999999999877543 2221 46789999987 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+.+.+.+||+|+ + ++|+|+..|+++
T Consensus 76 ~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 76 YDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999987 5 999999999875
No 62
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=7.1e-15 Score=104.56 Aligned_cols=109 Identities=26% Similarity=0.430 Sum_probs=93.3
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC---CC-----CCccchhhhhccCCCeE
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG---RS-----PKYTRVAEIMTDENKLI 145 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~---~~-----~~~~~v~~im~~~~~~~ 145 (208)
+.++++++++.++.+.|.+.+.+++||+ |++++++|+++..||++...... .. ....++.++|.. ++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVY 78 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCe
Confidence 7889999999999999998999999999 78899999999999876421110 00 135678899987 789
Q ss_pred EEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 146 TLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++++++++.+++..|.+++.+.+||+++ + ++|++|..|+++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 9999999999999999999999999987 4 999999999985
No 63
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.62 E-value=1.5e-14 Score=102.46 Aligned_cols=108 Identities=30% Similarity=0.466 Sum_probs=92.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC---------CCccchhhhhccCCCe
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS---------PKYTRVAEIMTDENKL 144 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~---------~~~~~v~~im~~~~~~ 144 (208)
+.++.++.++.++.+.|.+.+...+||+ ++ ++++|+++..+++.+....... ....++.++|.+ ++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--DP 77 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--CC
Confidence 7889999999999999999999999999 66 9999999999988754322110 013568899987 79
Q ss_pred EEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 145 ITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++++++.+++..|.+.+.+.+||+++ + ++|+||..|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999987 5 999999999986
No 64
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.62 E-value=2e-14 Score=100.33 Aligned_cols=106 Identities=26% Similarity=0.411 Sum_probs=91.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+.+.+.+||+ ++ ++++|+++..||.+... .... ...++.++|.. ++.++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~~-~~~~~~~~~~~--~~~~v~~~~~~ 75 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGRE-ATVLVGDVMTR--DPVTASPDETL 75 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCcc-cccCHHHhccC--CCeEECCCCCH
Confidence 7889999999999999998889999999 66 99999999999876432 2211 12368888887 89999999999
Q ss_pred HHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||+++ + ++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 76 RDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999999987 5 999999999975
No 65
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=7.6e-15 Score=102.59 Aligned_cols=100 Identities=27% Similarity=0.447 Sum_probs=87.6
Q ss_pred ecCCchHHHHHHHHHhcC-----CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCC
Q 028491 77 CRSDDTVEDAVKNMAQHN-----IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDA 151 (208)
Q Consensus 77 v~~~~tl~~a~~~m~~~~-----~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 151 (208)
+.+++++.++.+.|.+++ +..+||+ |++++++|+|+.+++++. ..+.+++++|.+ ++..+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~i~~~~ 70 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDT--DVISVSADD 70 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCC--CCeEEcCCC
Confidence 578999999999998776 4789999 778999999999997652 135679999987 799999999
Q ss_pred CHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHH
Q 028491 152 NILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRA 187 (208)
Q Consensus 152 ~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~ 187 (208)
++.++++.|..++.+.+||+++ + ++|+||..|+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 71 DQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred CHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 9999999999999999999985 4 9999999999875
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.61 E-value=1.5e-14 Score=101.91 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=88.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcC-
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPS- 149 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~- 149 (208)
+.++.+++++.++.+.|.+++...+||+ |+ +++++|+++.+|++.. .. ...+++++|.. ++.++..
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~---~~---~~~~v~~~~~~--~~~~~~~~ 73 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFL---TD---SETPLSEVMTP--REVLVVAP 73 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhh---hc---cCCCHHHhcCC--CceEEECC
Confidence 6789999999999999998899999999 65 6899999999997642 11 23569999987 6667766
Q ss_pred -CCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 150 -DANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 150 -~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
++++.++++.|.+++.+.+||+++ + ++|+||..|+++
T Consensus 74 ~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 74 TGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999986 4 999999999875
No 67
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.61 E-value=1.8e-14 Score=125.09 Aligned_cols=122 Identities=17% Similarity=0.300 Sum_probs=105.0
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
.+...+++++|.++ +.++.+++++.++++.|.+++++.+||+ |++++++|+|+.+|+++.+..+.. ....
T Consensus 331 ~l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~-~~~~ 400 (454)
T TIGR01137 331 VLKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGKA-NPDD 400 (454)
T ss_pred HhccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccCC-CcCC
Confidence 37889999999988 9999999999999999999999999999 778999999999998876554322 2356
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV 188 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~ 188 (208)
++.++|.+ ++.++++++++.++++.|.+++ ..+|++++ ++|+||+.|+++.+
T Consensus 401 ~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 AVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CHHHhcCC--CCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence 89999987 7889999999999999998864 35566667 99999999999875
No 68
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.60 E-value=1.1e-14 Score=126.11 Aligned_cols=119 Identities=23% Similarity=0.415 Sum_probs=104.2
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
+...++.++|.++ ++++.+++|+.++++.|.+++.+.+||+ | +++++|+||.+||... ....+
T Consensus 85 v~~VKv~eim~~~-------pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~~-------~~~~~ 147 (475)
T TIGR01303 85 VAFVKSRDLVLDT-------PITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLGV-------DRFTQ 147 (475)
T ss_pred HhhcchhhccccC-------CeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhcC-------CCCCC
Confidence 4567778888888 9999999999999999999999999999 4 4689999999997421 23467
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHHHh
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~~~ 191 (208)
++++|+. +++++++++++.+|++.|.+++++.+||+|+ + ++|+||..||++.....
T Consensus 148 V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 148 VRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 9999998 8999999999999999999999999999985 4 99999999999977654
No 69
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.60 E-value=2.2e-14 Score=99.87 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=89.0
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDAN 152 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~ 152 (208)
++.++.+++++.++.+.|.+++.+.+||+ ++ ++++|+++..|+.+.+.... .....++.++|.+ ++.+++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~--~~~~v~~~~~ 75 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIEGK-AKFSLPVREVMGE--PLPTVDPDAP 75 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcC--CCceeCCCCc
Confidence 37889999999999999999999999999 66 89999999999887654332 2224679999987 7899999999
Q ss_pred HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+.++++.|.+ .. .+||+++ + ++|+||.+|+++
T Consensus 76 l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 76 IEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 9999999988 33 4677766 4 999999999976
No 70
>PRK11573 hypothetical protein; Provisional
Probab=99.60 E-value=1e-14 Score=124.73 Aligned_cols=134 Identities=11% Similarity=0.275 Sum_probs=112.5
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
.+.+.+|+++|+|..+ +++++.++++.++.+.+.+++++++||++ ++.++++|++..+|++..+.. +......
T Consensus 183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~~-~~~~~~~ 255 (413)
T PRK11573 183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMTE-KKEFTKE 255 (413)
T ss_pred ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhhc-cCcCCHH
Confidence 3778999999999966 99999999999999999999999999995 445889999999999864332 2111123
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGEL 196 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~ 196 (208)
.+.+++. ++..|++++++.++++.|++++.+...|+|+. ..|+||..|+++.+.++..++.
T Consensus 256 ~l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~ 318 (413)
T PRK11573 256 NMLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred HHHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCccc
Confidence 3445654 48899999999999999999999999999985 9999999999999998876553
No 71
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=3.4e-14 Score=98.65 Aligned_cols=101 Identities=30% Similarity=0.510 Sum_probs=89.7
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+++++.+.++.++.+.|.+.+...+||+ ++ ++++|+++..||+.. ....+++++|.. ++.++.+++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l 71 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSK--DLVVAVPEMDI 71 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCC--CCeEECCCCCH
Confidence 7889999999999999988888899999 55 999999999997642 234579999987 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
.++++.|.+++.+++||++++ ++|+|+..|+++
T Consensus 72 ~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 72 MDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999864 999999999975
No 72
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.59 E-value=2.4e-14 Score=99.76 Aligned_cols=103 Identities=26% Similarity=0.440 Sum_probs=89.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcC-CCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPS-DAN 152 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~-~~~ 152 (208)
+.++.+++++.++.+.|.+++...+||+ +++++++|+++..+++.. . ....++.++|.. ++..+.+ +++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~---~---~~~~~v~~~~~~--~~~~~~~~~~~ 73 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE---T---DLDKPVSEVMTP--ENLLTTVEGTS 73 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec---c---cCCCCHHHhccc--CceEEecCCCC
Confidence 7889999999999999999999999999 778999999999997542 1 235689999976 5666666 999
Q ss_pred HHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 153 ILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 153 l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+.++++.|.+.+.+.+||+++ + ++|+||..|+++
T Consensus 74 l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 74 LEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999986 5 999999999975
No 73
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=4.7e-14 Score=97.97 Aligned_cols=102 Identities=28% Similarity=0.531 Sum_probs=90.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.+++++.++.+.|.+.+.+.+||+ +++++++|+++.++++.. ....++.++|.. ++.++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~l 71 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTR--DPPTVSPDDDV 71 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcC--CCceECCCCCH
Confidence 7889999999999999998889999999 677999999999998642 123568888877 78999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
.+++..|..++.+.+||++++ ++|+||..|+++
T Consensus 72 ~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~ 105 (106)
T cd04638 72 KEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 999999999999999999988 999999999875
No 74
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.59 E-value=2.9e-14 Score=99.41 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=87.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD 150 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~ 150 (208)
...+.+++++.++.+.+.+.+...+||+ ++ +++++|+|+.+|+.+.... +|.. ++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~--~~~~v~~~ 67 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALKN------------YIDP--SPFTVSPR 67 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHHH------------hccC--CCceECCC
Confidence 6788999999999999999888899999 66 6899999999998765321 7776 78899999
Q ss_pred CCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491 151 ANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA 187 (208)
Q Consensus 151 ~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~ 187 (208)
+++.++++.|.+++.+++||++++ ++|+||+.|++++
T Consensus 68 ~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 68 TSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLKA 105 (105)
T ss_pred CcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhcC
Confidence 999999999999999999999888 9999999999763
No 75
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.59 E-value=4.8e-14 Score=100.02 Aligned_cols=109 Identities=28% Similarity=0.391 Sum_probs=93.8
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC--C------CCCccchhhhhccCCCeE
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG--R------SPKYTRVAEIMTDENKLI 145 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~--~------~~~~~~v~~im~~~~~~~ 145 (208)
+.++++++++.+|.+.|.+.+.+++||+ |++++++|+++..+|.+...... . .....++.++|.. ++.
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVI 78 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCe
Confidence 7889999999999999998999999999 77899999999999876432110 0 1234679999987 799
Q ss_pred EEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 146 TLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 146 ~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
++++++++.++++.|.+++.+.+||++++ ++|+++..|+++
T Consensus 79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 99999999999999999999999999888 999999999975
No 76
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.58 E-value=3.7e-14 Score=123.71 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=96.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSD 150 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~ 150 (208)
++++++++|+.++.+.|.+++++.+||+ |+ +++++|+||.+|+... . ..+.+++++|++.+++++++++
T Consensus 110 pvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v-~-----~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 110 PVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV-N-----DRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc-c-----ccCCcHHHHhccCCCcEEECCC
Confidence 8999999999999999999999999999 55 4899999999997532 1 2467899999873238899999
Q ss_pred CCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491 151 ANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE 190 (208)
Q Consensus 151 ~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~ 190 (208)
+++.+|++.|.+++.+.+||+|++ ++|+||+.|+++.+..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999865 9999999999999865
No 77
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=5.4e-14 Score=100.07 Aligned_cols=108 Identities=26% Similarity=0.477 Sum_probs=92.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC---CC------CCccchhhhhccCCCe
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG---RS------PKYTRVAEIMTDENKL 144 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~---~~------~~~~~v~~im~~~~~~ 144 (208)
+.++++++++.++.+.|.+.+++.+||+ ++ ++++|+++..++++.+.... .. ....++.++|.. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--DP 77 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--CC
Confidence 7889999999999999999999999999 55 89999999999877543210 00 013568899987 89
Q ss_pred EEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHH
Q 028491 145 ITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 145 ~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~ 186 (208)
+++.+++++.++++.|.+++...+||+++ + ++|+++..|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999999987 4 999999999986
No 78
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=7.9e-14 Score=102.50 Aligned_cols=108 Identities=31% Similarity=0.567 Sum_probs=93.1
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC--C-----------------------
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--S----------------------- 128 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~--~----------------------- 128 (208)
++++++++++.++.+.|.+++++.+||+ ++ ++++|+++..|+++.+..... .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 7889999999999999999999999999 56 899999999998775533220 0
Q ss_pred ------CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHH
Q 028491 129 ------PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVR 186 (208)
Q Consensus 129 ------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~ 186 (208)
....++.++|.. ++.++++++++.+++..|.+.+.+.+||++++ ++|+|+..|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 024568888887 79999999999999999999999999999888 999999999874
No 79
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.57 E-value=2.6e-14 Score=123.60 Aligned_cols=115 Identities=25% Similarity=0.476 Sum_probs=100.6
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHHHHHhcCCCCCccch
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLRKIVGQGRSPKYTRV 134 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~~~~~~~~~~~~~~v 134 (208)
+.++.|.++ ++++++++|+.++.+.|.+++++.+||+ |++ ++++|+|+.+||+.. . ....++
T Consensus 81 ~~~~~~~~~-------~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~---~---~~~~~V 145 (450)
T TIGR01302 81 RAENGIISD-------PVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFV---K---DKGKPV 145 (450)
T ss_pred cccCceecC-------ceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhh---h---cCCCCH
Confidence 345566666 8999999999999999999999999999 566 799999999998642 1 135689
Q ss_pred hhhhc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491 135 AEIMT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV 189 (208)
Q Consensus 135 ~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~ 189 (208)
+++|+ . +++++++++++.++++.|.+++.+.+||+|++ ++|+||..|+++.+.
T Consensus 146 ~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 146 SEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred HHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99998 4 79999999999999999999999999999976 999999999999874
No 80
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.57 E-value=4.6e-14 Score=114.37 Aligned_cols=113 Identities=24% Similarity=0.436 Sum_probs=97.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~ 135 (208)
-.+++++|.++ ++.++.+++++.++++.|.+.+.+++||+ |++++++|+|+..|+++.+. .+. ....+++
T Consensus 154 ~~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~~-~~~~~v~ 223 (268)
T TIGR00393 154 LVKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GGG-SLKSEVR 223 (268)
T ss_pred hhhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cCC-cccCcHH
Confidence 47899999765 15779999999999999999999999999 77899999999999887543 222 2467899
Q ss_pred hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEE
Q 028491 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMIS 180 (208)
Q Consensus 136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit 180 (208)
++|.+ ++.++.+++++.+|++.|.+++.+++||+|++ ++|+|+
T Consensus 224 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99988 78999999999999999999999999999864 999985
No 81
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3.9e-14 Score=121.19 Aligned_cols=131 Identities=21% Similarity=0.411 Sum_probs=118.7
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-----cCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-----HNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR 127 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~ 127 (208)
.+...+++.+|++. ++++.++.|+.+++..+++ ..+.+++|+ |++++++|+++.++++.+
T Consensus 128 ~y~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~a------ 192 (451)
T COG2239 128 SYPEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRERAEDAETIYYLYVV--DEKGKLLGVVSLRDLLTA------ 192 (451)
T ss_pred CCChhhhhccceee-------eEEeccCcCHHHHHHHHHHhcccccccceEEEE--CCccceEEEeeHHHHhcC------
Confidence 46677899999999 9999999999999999985 346799999 899999999999998863
Q ss_pred CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHH
Q 028491 128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNE 201 (208)
Q Consensus 128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~ 201 (208)
.++.+++++|.+ .+.++.++++.+++.++|.+++.-.+||+|++ ++|+||..|++..+.++..+...++.-
T Consensus 193 -~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 193 -EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred -CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999998 79999999999999999999999999999987 999999999999999988887777665
No 82
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.56 E-value=6.3e-14 Score=122.38 Aligned_cols=115 Identities=27% Similarity=0.465 Sum_probs=102.8
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhh
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEI 137 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~i 137 (208)
.++++|.++ ++++++++|+.++.+.|.+++++.+||+ |++++++|+|+.+||... . ....++.++
T Consensus 88 ~~~dim~~~-------~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~---~---~~~~~V~di 152 (486)
T PRK05567 88 RSESGVVTD-------PVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE---T---DLSQPVSEV 152 (486)
T ss_pred hhhhcccCC-------CeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc---c---cCCCcHHHH
Confidence 567788877 9999999999999999999999999999 788999999999997542 1 235689999
Q ss_pred hc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491 138 MT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV 189 (208)
Q Consensus 138 m~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~ 189 (208)
|. . +++++++++++.++++.|.+++++.+||+|++ ++|+||..|+++.+.
T Consensus 153 m~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 153 MTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 98 4 79999999999999999999999999999876 999999999998874
No 83
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.55 E-value=4.9e-14 Score=122.87 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=99.5
Q ss_pred HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC---CceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491 59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE---QQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135 (208)
Q Consensus 59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~---~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~ 135 (208)
.++.|..+ ++++++++|+.++.++|.+++++.+||+ ++ +++++|+|+.+|+... . ....+++
T Consensus 98 ~e~g~i~d-------pvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~---~---~~~~~V~ 162 (495)
T PTZ00314 98 FENGFIMD-------PYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV---K---DKSTPVS 162 (495)
T ss_pred cccccccC-------CeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc---c---cCCCCHH
Confidence 34455555 8999999999999999999999999999 55 3799999999997531 1 2357899
Q ss_pred hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV 189 (208)
Q Consensus 136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~ 189 (208)
++|++.++++++++++++.+|+++|.+++.+.+||+|++ ++|+||++|+++...
T Consensus 163 diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 163 EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 999864468999999999999999999999999999876 999999999998864
No 84
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.54 E-value=2.3e-13 Score=95.87 Aligned_cols=105 Identities=31% Similarity=0.624 Sum_probs=92.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
++++.++.++.+|...|.++++..+||+ +.++++|++|.+|+++++...... ..++.++|.. ++.++.++.++
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~---~~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~--~~~~~~~~~~~ 81 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALAAGGKR--LLPVKEVMTK--PVVTVDPDTPL 81 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHhccCCc--cccHHHhccC--CcEEECCCCCH
Confidence 8999999999999999999999999999 344899999999998876544321 2279999998 79999999999
Q ss_pred HHHHHHHHh-cCCCEeeeecCc---eeEEEEHHHHH
Q 028491 154 LHAMQLMTD-KHIRHVPVIDGR---IVGMISIVDVV 185 (208)
Q Consensus 154 ~~a~~~~~~-~~~~~lpVvd~~---~vGiit~~dll 185 (208)
.+++..|.+ ++++.+||++++ ++|++|..|++
T Consensus 82 ~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 82 EEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999999 799999999863 99999999973
No 85
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.53 E-value=4.9e-13 Score=92.63 Aligned_cols=108 Identities=33% Similarity=0.605 Sum_probs=92.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
+.++.++.++.++.+.|.+.+...+||+ +++++++|+++..|++..+.... ......+.++|.. ++.++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 77 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTR--DVVTVSPDTSL 77 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcC--CceecCCCcCH
Confidence 6789999999999999999889999999 77799999999999887654332 1122237788887 79999999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
.+++..|.+.+.+.+||++++ ++|+++..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 78 EEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999999884 999999999875
No 86
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.3e-13 Score=96.32 Aligned_cols=108 Identities=15% Similarity=0.243 Sum_probs=87.9
Q ss_pred eEEecCCchHHHHHHHHHhcC-CcEEEEEecCCCceEEEeechHHHHHHHHhcC--CCCCccchhhhhccCCCeEEEcCC
Q 028491 74 WLCCRSDDTVEDAVKNMAQHN-IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG--RSPKYTRVAEIMTDENKLITLPSD 150 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~-~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~--~~~~~~~v~~im~~~~~~~~v~~~ 150 (208)
+.++++++++.++.+.|...+ .+.+||+ ++ ++++|+++..|+++++.... ......++.++|.+ ++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 77 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEAD 77 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCC
Confidence 678899999999999998876 8899999 67 99999999999876432110 00134679999987 89999999
Q ss_pred CCHHHHHHHHHhcCCC---EeeeecC-c-eeEEEEHHHHHH
Q 028491 151 ANILHAMQLMTDKHIR---HVPVIDG-R-IVGMISIVDVVR 186 (208)
Q Consensus 151 ~~l~~a~~~~~~~~~~---~lpVvd~-~-~vGiit~~dll~ 186 (208)
+++.+++..|.+++.. ..||+++ + ++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999998864 3456654 5 999999999875
No 87
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=118.75 Aligned_cols=133 Identities=17% Similarity=0.349 Sum_probs=113.0
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
.+.+.+++++|+|..+ +.+++.+.++.++.+.+.+++++++||++ +..+.++|++..+|++........ ..
T Consensus 202 ~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~~~---~~ 272 (429)
T COG1253 202 DLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQS---DL 272 (429)
T ss_pred ccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcCcc---cc
Confidence 4778999999999855 99999999999999999999999999995 477899999999999987654431 11
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELK 197 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~ 197 (208)
.....+. +++.+++.+++.++++.|++.+.|...|+|+. +.|+||..|+++.+.++..++..
T Consensus 273 ~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d 336 (429)
T COG1253 273 DLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHD 336 (429)
T ss_pred chhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCccc
Confidence 1222222 58899999999999999999999999999985 99999999999999998775554
No 88
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.49 E-value=5e-13 Score=97.30 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=80.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC----------ccchhhhhcc---
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK----------YTRVAEIMTD--- 140 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~----------~~~v~~im~~--- 140 (208)
+.++.+++++.+|++.|.+++.+.+||+ |++++++|+++..|+++++........ ...+.++|.+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 7889999999999999999999999999 788999999999999887654332110 0124456531
Q ss_pred ----CCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc
Q 028491 141 ----ENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR 174 (208)
Q Consensus 141 ----~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~ 174 (208)
.++++++.+++++.+|++.|.+++++++||+|++
T Consensus 81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 1268899999999999999999999999999864
No 89
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.43 E-value=2.9e-12 Score=113.70 Aligned_cols=122 Identities=24% Similarity=0.357 Sum_probs=105.3
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---------
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR--------- 127 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~--------- 127 (208)
.+|+++|.++ +.++++++++.+|++.|.++++..+||+ |++|+++|+|+..|+.+.+.....
T Consensus 68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMDILDPEILSKSPT 138 (546)
T ss_pred CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCC
Confidence 6899999988 9999999999999999999999999999 788999999999998875543110
Q ss_pred -------------------------------------------------------------------------C------
Q 028491 128 -------------------------------------------------------------------------S------ 128 (208)
Q Consensus 128 -------------------------------------------------------------------------~------ 128 (208)
.
T Consensus 139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~ 218 (546)
T PRK14869 139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVL 218 (546)
T ss_pred CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence 0
Q ss_pred ------------------------CCccchhhhhc-cCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEH
Q 028491 129 ------------------------PKYTRVAEIMT-DENKLITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISI 181 (208)
Q Consensus 129 ------------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~ 181 (208)
....+|+++|+ + ++.++++++++.++.+.|.+++.+.+||+|+ + ++|+||.
T Consensus 219 ~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~ 296 (546)
T PRK14869 219 ELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISR 296 (546)
T ss_pred HHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEH
Confidence 01346777888 6 7999999999999999999999999999996 4 9999999
Q ss_pred HHHHHHHH
Q 028491 182 VDVVRAVV 189 (208)
Q Consensus 182 ~dll~~~~ 189 (208)
.|+++...
T Consensus 297 ~dl~~~~~ 304 (546)
T PRK14869 297 YHLLSPVR 304 (546)
T ss_pred HHhhcccc
Confidence 99998654
No 90
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.5e-12 Score=106.72 Aligned_cols=132 Identities=17% Similarity=0.332 Sum_probs=112.2
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
++.++|+|+|.+..+ +..+..+++.+++.+.+....++++|+.+ |+-++++|++..+|+++++..... .....
T Consensus 197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~~-~~k~d 269 (423)
T COG4536 197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKNE-FTKED 269 (423)
T ss_pred cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccCc-ccHhH
Confidence 778999999999866 89999999999999999999999999997 455679999999999886544331 22333
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGE 195 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~ 195 (208)
+..+.. +|+++++++++.+-+..|++.+-+...|+|+. +.|+||.+|+++.+.+...++
T Consensus 270 ~~~~a~---epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde 330 (423)
T COG4536 270 ILRAAD---EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE 330 (423)
T ss_pred HHHHhc---CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc
Confidence 444434 59999999999999999999999999999986 999999999999999887743
No 91
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.26 E-value=4e-11 Score=74.05 Aligned_cols=56 Identities=25% Similarity=0.506 Sum_probs=52.7
Q ss_pred HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491 59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV 123 (208)
Q Consensus 59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~ 123 (208)
|+++|+++ ++++++++++.++.+.|.+++++++||+ |++++++|+|+.+||+++++
T Consensus 1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence 57899998 9999999999999999999999999999 89999999999999998764
No 92
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.3e-11 Score=95.53 Aligned_cols=130 Identities=14% Similarity=0.373 Sum_probs=112.2
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
.....|+|+|.|..+ .+++..+.++.+++..+.+..++++||+. ++.+.+.|++-.+||+..+.... ..-.
T Consensus 64 iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~~---~~F~ 134 (293)
T COG4535 64 IADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSDA---EPFD 134 (293)
T ss_pred HHHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhcCCc---cccc
Confidence 457899999999855 89999999999999999999999999996 45678999999999998643322 2245
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGE 195 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~ 195 (208)
+.++..+ ...|+++-.+...++-|+..+.|...|+|+- +-|+||..|+++.+.+....+
T Consensus 135 i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE 195 (293)
T COG4535 135 IKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDE 195 (293)
T ss_pred HHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccc
Confidence 7787764 8899999999999999999999999999985 999999999999999877654
No 93
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.23 E-value=1.2e-10 Score=98.52 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=98.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc-hhhhhcc----CCCeEEEc
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR-VAEIMTD----ENKLITLP 148 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~-v~~im~~----~~~~~~v~ 148 (208)
+..+..++++.+|++.|...+++.+||+ +..|..+|.++..|................ +++.... ...++++.
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 8889999999999999999999999999 788888999999997765544444433444 5554332 12579999
Q ss_pred CCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491 149 SDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 149 ~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~ 191 (208)
++.++.+++..|..+++|+++|+|++ ++|+||..|++..+...
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 99999999999999999999999985 99999999999999764
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.18 E-value=1.4e-10 Score=71.58 Aligned_cols=54 Identities=35% Similarity=0.626 Sum_probs=50.7
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVV 189 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~ 189 (208)
|+++|++ +++++++++++.++++.|.+++++++||+|++ ++|+||.+|+++++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 5789998 89999999999999999999999999999766 999999999999885
No 95
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=8.3e-09 Score=88.11 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=95.4
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~ 136 (208)
.++.++|.+.... .+...++.+..+++..|...+.+.++|+ |++++++|+++..++.+.. .. ..++.+
T Consensus 274 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~~-----~~~~~~ 341 (400)
T PRK10070 274 FSAKDIARRTPNG----LIRKTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL-TQ-----QQGLDA 341 (400)
T ss_pred cchhhhhhcCccc----ccccCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh-hc-----CCchhh
Confidence 4556666543110 1234467789999999999999999999 8999999999999976532 11 235777
Q ss_pred hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491 137 IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 137 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~ 191 (208)
.+.. ...++++++++.+++..+..+... +||+|++ ++|+|+..++++.+...
T Consensus 342 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 342 ALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 7776 788999999999999999997776 9999965 99999999999998653
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.01 E-value=1.2e-08 Score=86.09 Aligned_cols=107 Identities=19% Similarity=0.330 Sum_probs=91.3
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANI 153 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l 153 (208)
.....++.+..++.+.|...+...+.|+ ++++++.|.++..++.... . ....+.+.+.. .+.++++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~~~~~~~ 321 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQAR-K-----KAQGLQDVLID--DIYTVDAGTLL 321 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHh-h-----cCCchhhhhcc--CCceECCCCcH
Confidence 3456678889999999999999999999 7899999999999976532 1 12457888877 78899999999
Q ss_pred HHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491 154 LHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 154 ~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~ 191 (208)
.+++..|.+++.. +||+|++ ++|+||..++++.+...
T Consensus 322 ~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 322 RETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred HHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 9999999999998 9999965 99999999999998764
No 97
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.96 E-value=2.9e-09 Score=77.83 Aligned_cols=90 Identities=27% Similarity=0.421 Sum_probs=72.9
Q ss_pred chHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhh
Q 028491 114 TERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQ 192 (208)
Q Consensus 114 t~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~ 192 (208)
+.+.+++++..... ....+..+|+. |++++++++++.+++++|..++++.+||++++ ++|-||-.++.+.+.+..
T Consensus 49 t~k~Il~aL~e~e~--~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 49 TVKRILEALEEAEK--TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGM 124 (187)
T ss_pred HHHHHHHHHHHhhc--ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccc
Confidence 44566665543332 45678999999 99999999999999999999999999999999 999999999999998763
Q ss_pred -HHHHHHHHHhhhcCC
Q 028491 193 -KGELKRLNEFIRGEY 207 (208)
Q Consensus 193 -~~~~~~~~~~~~~~y 207 (208)
.-...+..++|..+|
T Consensus 125 e~i~~~~vr~vM~e~f 140 (187)
T COG3620 125 ESIRSLRVREVMGEPF 140 (187)
T ss_pred cchhhhhHHHHhcCCC
Confidence 334556777777654
No 98
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.87 E-value=5.5e-09 Score=86.85 Aligned_cols=108 Identities=20% Similarity=0.359 Sum_probs=93.6
Q ss_pred CeEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCC
Q 028491 73 SWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDA 151 (208)
Q Consensus 73 ~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~ 151 (208)
+++.++|+.|+.++.+....+++..+||.+++. ..+++|+||.+|+ ..+ + .....++++|++ ++++.+.+.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~--~---~~~~~~~~vmt~--~~~~~~~gi 188 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL--E---DNSLLVSDVMTK--NPVTGAQGI 188 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh--h---cccchhhhhccc--ccccccccc
Confidence 378899999999999999999999999994211 3589999999995 444 1 346889999999 679999999
Q ss_pred CHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHH
Q 028491 152 NILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAV 188 (208)
Q Consensus 152 ~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~ 188 (208)
++.++-+++.+++-..+||+|++ ++-+|+++||.+..
T Consensus 189 ~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 189 TLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred cHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 99999999999999999999987 99999999998764
No 99
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.80 E-value=1.1e-08 Score=88.94 Aligned_cols=115 Identities=10% Similarity=0.172 Sum_probs=93.6
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchh
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVA 135 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~ 135 (208)
..+++++|++. +.++.+++++.+|++.|.+++...+||+ |++|+++|+||.+|+++.+..+ ..+
T Consensus 194 ~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~~-------~~e 257 (449)
T TIGR00400 194 EEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQSE-------ATE 257 (449)
T ss_pred CCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHhh-------hHH
Confidence 45799999988 8899999999999999999999999999 8889999999999999875432 347
Q ss_pred hhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCceeEEEEHHHHHHHHHHh
Q 028491 136 EIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGRIVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 136 ~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~vGiit~~dll~~~~~~ 191 (208)
++|.. ...+..+++++.+++..|.+++..+++|. -+.|+++ ..++..+.+.
T Consensus 258 d~~~~--~gv~~~~~~~l~~~~~~~~~~R~~wL~v~--~~~~~~t-~~ii~~f~~~ 308 (449)
T TIGR00400 258 DFYMI--AAVKPLDDSYFDTSILVMAKNRIIWLLVL--LVSSTFT-ATIISNYEDL 308 (449)
T ss_pred HHHHh--cCCCCCcchhhhchHHHHHHhccchHHHH--HHHHHHH-HHHHHHHHHH
Confidence 88876 45555567788999999999999998875 2667776 6666665443
No 100
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.69 E-value=3.3e-08 Score=77.70 Aligned_cols=73 Identities=30% Similarity=0.553 Sum_probs=63.3
Q ss_pred CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491 129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205 (208)
Q Consensus 129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~~~~~~~ 205 (208)
.+..++.++|++ +++++.+++++.+|..+|.+++++..||+|++ ++|++|.+|+.+++.+- ....+++++|+.
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g--~~~~kV~~~M~k 242 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG--NLDAKVSDYMRK 242 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC--CccccHHHHhcc
Confidence 457889999999 99999999999999999999999999999999 99999999999999863 233455555553
No 101
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.67 E-value=1.4e-08 Score=90.32 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=93.9
Q ss_pred cccHHHhhc-ccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh-----cC---
Q 028491 56 NISVAEVLM-TKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG-----QG--- 126 (208)
Q Consensus 56 ~~~v~~~m~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~-----~~--- 126 (208)
..+|+++|+ ++ +.++++++++.++.+.|.++++..+||+ |++|+++|+|+..|+++.... +.
T Consensus 245 ~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGiit~~dl~~~~~~~~iLVD~~e~ 315 (546)
T PRK14869 245 SIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVISRYHLLSPVRKKVILVDHNEK 315 (546)
T ss_pred CCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEEEHHHhhccccCceEEEcCccc
Confidence 678999999 77 8999999999999999999999999999 889999999999998864211 00
Q ss_pred -CC---C---------CccchhhhhccCCCeEEE---cCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHH
Q 028491 127 -RS---P---------KYTRVAEIMTDENKLITL---PSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRA 187 (208)
Q Consensus 127 -~~---~---------~~~~v~~im~~~~~~~~v---~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~ 187 (208)
.. . ...+++++++. +++.+ +...+..-+.++|.+.++...|++.+. +.|+++.++.++.
T Consensus 316 ~q~~~~~~~~~i~~iiDHH~~~~~~~~--~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 316 SQAVEGIEEAEILEIIDHHRLGDIQTS--NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGLLLAAILSDTLLFKS 391 (546)
T ss_pred cccccchhhceEEEEecCCccCCCCCC--CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCccC
Confidence 00 0 01134556655 44333 446667789999999999888888777 9999999988875
No 102
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=82.72 Aligned_cols=126 Identities=20% Similarity=0.342 Sum_probs=100.7
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHHHHHhcC---
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLRKIVGQG--- 126 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~~~~~~~--- 126 (208)
.++.+.++++|+++ ++++..-..+...++.++.+.+..+||++..+. +++.|+|-+..|+.-+ .+.
T Consensus 578 ~mr~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL-~~~~f~ 649 (762)
T KOG0474|consen 578 YMRNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL-KKRVFV 649 (762)
T ss_pred HhhhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH-Hhhhhh
Confidence 36688999999998 999999999999999999999999999942112 5789999999987533 211
Q ss_pred ---CCC----------------C----------------ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeee
Q 028491 127 ---RSP----------------K----------------YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVI 171 (208)
Q Consensus 127 ---~~~----------------~----------------~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVv 171 (208)
... . ...+..+|.+ .|+++.+++++..++.+|++-+.+++.|+
T Consensus 650 ~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv 727 (762)
T KOG0474|consen 650 EESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVV 727 (762)
T ss_pred ccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEe
Confidence 000 0 1123334555 79999999999999999999999999999
Q ss_pred cCc--eeEEEEHHHHHHHH
Q 028491 172 DGR--IVGMISIVDVVRAV 188 (208)
Q Consensus 172 d~~--~vGiit~~dll~~~ 188 (208)
+.. ++|++|++|+...-
T Consensus 728 ~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 728 PKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cCCCceeEEEehhhhhhHH
Confidence 876 99999999998654
No 103
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.61 E-value=5.3e-08 Score=78.08 Aligned_cols=60 Identities=27% Similarity=0.520 Sum_probs=55.2
Q ss_pred CCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491 129 PKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE 190 (208)
Q Consensus 129 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~ 190 (208)
.....+.++|++ +++++++++++.+|.++|.+|+++.+||+|++ ++|+||++|+++....
T Consensus 242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc
Confidence 346789999999 99999999999999999999999999999998 9999999999995544
No 104
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.59 E-value=6.3e-07 Score=78.38 Aligned_cols=113 Identities=17% Similarity=0.294 Sum_probs=93.5
Q ss_pred eEEecC-CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC----------------------CCC
Q 028491 74 WLCCRS-DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR----------------------SPK 130 (208)
Q Consensus 74 ~~~v~~-~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~----------------------~~~ 130 (208)
...+.. ++|+.|...+|.++.++.+||+-+.+.++++|+|.++||..++..... ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 444444 599999999999999999999976777899999999999887763110 011
Q ss_pred ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHH
Q 028491 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAV 188 (208)
Q Consensus 131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~ 188 (208)
....+++|.. .++++...++.+.++.+|++-+++.+.|.+++ +.|+||++|+++..
T Consensus 638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence 2345677777 79999999999999999999999999999999 99999999999875
No 105
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=1.6e-07 Score=65.59 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=50.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|... +.++.+++++.+|++.|.+++...+||+ |++++++|+||.+|+++
T Consensus 55 ~~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence 34688999877 8899999999999999999999999999 77799999999999864
No 106
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=3.9e-07 Score=63.81 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=51.3
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.++ +.++.+++++.++++.|.+++...+||+ +++++++|+|+.+|+++
T Consensus 58 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence 46789999888 8999999999999999999999999999 77789999999999753
No 107
>PRK11573 hypothetical protein; Provisional
Probab=98.47 E-value=8.3e-07 Score=76.30 Aligned_cols=90 Identities=12% Similarity=0.247 Sum_probs=69.4
Q ss_pred hHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHh
Q 028491 115 ERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 115 ~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~ 191 (208)
.++++..++ ...+.+++++|+++.++.+++.++++.++++.+.+++++++||.+++ ++|+|..+|++..+...
T Consensus 174 e~~mi~~vl----~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~ 249 (413)
T PRK11573 174 NQDMLLSVL----DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK 249 (413)
T ss_pred HHHHHHHHh----ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc
Confidence 334444443 35578999999999999999999999999999999999999999875 99999999999865432
Q ss_pred hHHHHHHHHHhhhcCCC
Q 028491 192 QKGELKRLNEFIRGEYY 208 (208)
Q Consensus 192 ~~~~~~~~~~~~~~~y~ 208 (208)
.......+.++++.++|
T Consensus 250 ~~~~~~~l~~~~r~~~~ 266 (413)
T PRK11573 250 KEFTKENMLRAADEIYF 266 (413)
T ss_pred CcCCHHHHHhhccCCeE
Confidence 11123445566666554
No 108
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=4.6e-07 Score=63.78 Aligned_cols=54 Identities=31% Similarity=0.416 Sum_probs=50.4
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~ 119 (208)
.+++++|.+. +.++++++++.++++.|.+.+...+||+ |++++++|+|+..||.
T Consensus 58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence 6799999988 8899999999999999999999999999 7889999999999975
No 109
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.43 E-value=3.5e-07 Score=78.53 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=62.9
Q ss_pred CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHhhHHHHHHHHHhhh
Q 028491 128 SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQQKGELKRLNEFIR 204 (208)
Q Consensus 128 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~~~~~~~~~~~~~~ 204 (208)
...+.+++++|+++.++.+++.++++.++++.+.+++++++||.+++ ++|+|+.+|++..+.+. ...+.++++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~l~~~~~ 262 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK----NFDWQSLLR 262 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC----CCCHHHHcC
Confidence 35578999999988789999999999999999999999999999875 99999999999765421 123556666
Q ss_pred cCC
Q 028491 205 GEY 207 (208)
Q Consensus 205 ~~y 207 (208)
.++
T Consensus 263 ~~~ 265 (408)
T TIGR03520 263 EPY 265 (408)
T ss_pred CCe
Confidence 554
No 110
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.40 E-value=6.9e-07 Score=73.39 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=69.3
Q ss_pred EeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHH
Q 028491 111 GIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRA 187 (208)
Q Consensus 111 G~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~ 187 (208)
|.++..+ +.++.+-....+.+|+++|+++.++.++++++++.++++.+.+++.+++||+++ + ++|+|+.+|++..
T Consensus 48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 6666555 233444434567899999998667999999999999999999999999999986 4 9999999999976
Q ss_pred HHHhhHHHHHHHHHhhhcCC
Q 028491 188 VVEQQKGELKRLNEFIRGEY 207 (208)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~y 207 (208)
...... ...+.++++.++
T Consensus 126 ~~~~~~--~~~l~~l~r~~~ 143 (292)
T PRK15094 126 MRSDAE--AFSMDKVLRQAV 143 (292)
T ss_pred hhccCC--cCCHHHHcCCCc
Confidence 532111 123556666543
No 111
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=1.1e-06 Score=62.17 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=51.2
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.+. +.++.+++++.++++.|.+++.+.+||+ +++|+++|+|+..|+++
T Consensus 68 ~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence 45789999887 8999999999999999999999999999 77899999999999764
No 112
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.35 E-value=1.6e-06 Score=60.35 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=50.3
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~ 119 (208)
..++.++|.+. +.++.+++++.++++.|.+++...+||+ +++++++|+|+.+|++
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhc
Confidence 34689999887 8899999999999999999999999999 7789999999999975
No 113
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.32 E-value=1.4e-06 Score=61.31 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=50.1
Q ss_pred cccccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC---ceEEEeechHHHHH
Q 028491 54 LENISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ---QHIAGIFTERDYLR 120 (208)
Q Consensus 54 ~~~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~---~~~iG~vt~~dl~~ 120 (208)
+...+++++|.+ . +.++.+++++.++++.|.++++..+||+ |++ ++++|+||..||++
T Consensus 55 ~~~~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPN-------ITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCC-------cEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhheec
Confidence 345678899985 4 7899999999999999999999999999 555 69999999999753
No 114
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=2e-06 Score=60.08 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=49.7
Q ss_pred cccHHHhhcccCCCCCCCeEEecCC--chHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSD--DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~--~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.++ +++.++++.|.+++...+||+ |++|+++|+||..|+++
T Consensus 57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence 45788999877 7888887 789999999999999999999 77899999999999865
No 115
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.8e-06 Score=60.25 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=49.9
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|..+ +.++++++++.++++.|.+.+...+||+ ++ ++++|+|+..|+++
T Consensus 59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence 46789999877 8999999999999999999999999999 56 99999999999764
No 116
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.30 E-value=2.1e-06 Score=59.46 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=51.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
..+++++|.++ +.++.+++++.++++.|.+++...+||+ +++++++|+|+..||+++
T Consensus 52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhhh
Confidence 45788999887 8999999999999999999999999999 778999999999998763
No 117
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.30 E-value=3.8e-06 Score=73.81 Aligned_cols=113 Identities=18% Similarity=0.252 Sum_probs=80.1
Q ss_pred cccHHHhhc-ccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCC---CCCc
Q 028491 56 NISVAEVLM-TKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGR---SPKY 131 (208)
Q Consensus 56 ~~~v~~~m~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~---~~~~ 131 (208)
..+++++|. .+ ++++.+++++.++.+.|.+++...+||+ |++++++|+||.+||++.+..... ....
T Consensus 146 ~~~V~dim~~~~-------~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~~p~a~~d~~g~ 216 (486)
T PRK05567 146 SQPVSEVMTKER-------LVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEEFPNACKDEQGR 216 (486)
T ss_pred CCcHHHHcCCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhhCCCcccccCCC
Confidence 357899998 45 8999999999999999999999999999 889999999999999876432110 0012
Q ss_pred cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecC--c-eeEEEEHHHHHHH
Q 028491 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDG--R-IVGMISIVDVVRA 187 (208)
Q Consensus 132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~--~-~vGiit~~dll~~ 187 (208)
..+...|.. .+ .-.+.+..|.+.+++. +|+|. + ..|+++..+.++.
T Consensus 217 l~V~aai~~-------~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 217 LRVGAAVGV-------GA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred EEEEeeccc-------Cc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 233444433 22 2277888888899984 46663 3 6666655544444
No 118
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.30 E-value=2.6e-06 Score=59.20 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=50.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|..++...+||+ +++++++|+|+..||++
T Consensus 58 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 TLPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cCCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence 35799999988 8899999999999999999999999999 67899999999999864
No 119
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.29 E-value=1.5e-06 Score=59.57 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=41.0
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLR 120 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~ 120 (208)
+.++.+++++.+|++.|.++++.++||+ +++ |+++|+||.+|+++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence 4689999999999999999999999999 565 89999999999764
No 120
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=2.1e-06 Score=60.44 Aligned_cols=53 Identities=28% Similarity=0.590 Sum_probs=48.4
Q ss_pred cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHH
Q 028491 132 TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVR 186 (208)
Q Consensus 132 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~ 186 (208)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++|+|+..|+.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 569999987 78999999999999999999999999999864 999999999864
No 121
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=3e-06 Score=58.89 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=51.7
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+...++.++|.++ +.++.+++++.++++.|.+++...+||+ +++|+++|+++..|+++
T Consensus 55 ~~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence 3456789999887 8999999999999999999999999999 77889999999999764
No 122
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.28 E-value=3e-06 Score=58.57 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=51.0
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|... +.++.+++++.++.+.|.+++...+||+ +++++++|+++..|+++
T Consensus 52 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence 45789999887 8999999999999999999999999999 78899999999999764
No 123
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.27 E-value=8.4e-06 Score=71.16 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=53.0
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~ 122 (208)
.+++++|+++ ++++++++++.+|+++|.++++..+||+ |++++++|+||.+||++..
T Consensus 146 ~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence 5799999988 9999999999999999999999999999 7889999999999998753
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.27 E-value=6.1e-06 Score=72.09 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=69.2
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE 136 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~ 136 (208)
..++++|+++ +.++++++++.+|++.|.+++...+||+ |++++++|+||..||++..... ++.+
T Consensus 148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~~~~-------~~~~ 211 (479)
T PRK07807 148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRATIYT-------PAVD 211 (479)
T ss_pred CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhCC-------chhh
Confidence 4699999988 9999999999999999999999999999 7788999999999998753221 1111
Q ss_pred h----hccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec
Q 028491 137 I----MTDENKLITLPSDANILHAMQLMTDKHIRHVPVID 172 (208)
Q Consensus 137 i----m~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 172 (208)
. +.. .. +.......+.+..|.+.+++. +++|
T Consensus 212 ~~g~l~V~--aa--v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 212 AAGRLRVA--AA--VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred hhhccchH--hh--hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 1 111 11 122234566777777777765 4555
No 125
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.26 E-value=2.8e-07 Score=76.26 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=71.4
Q ss_pred ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcCC
Q 028491 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQQKGELKRLNEFIRGEY 207 (208)
Q Consensus 131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~y 207 (208)
..+|+|+|.++.+...++.+++.++.++.+......++|+..++ ++|++..+|+++++.+......+.+....+++|
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy 278 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY 278 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence 46899999999999999999999999999999999999999987 999999999999999887767777788888888
Q ss_pred C
Q 028491 208 Y 208 (208)
Q Consensus 208 ~ 208 (208)
|
T Consensus 279 F 279 (423)
T COG4536 279 F 279 (423)
T ss_pred e
Confidence 7
No 126
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.26 E-value=3.6e-06 Score=60.07 Aligned_cols=64 Identities=14% Similarity=0.347 Sum_probs=52.6
Q ss_pred CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcC
Q 028491 143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRGE 206 (208)
Q Consensus 143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~ 206 (208)
++.++++++++.++++.|.+++++.+||+|++ ++|+++..|+++.+.........++.++|..+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~ 68 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ 68 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence 68899999999999999999999999999874 99999999999877654433344666666544
No 127
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=3.6e-06 Score=57.82 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=50.4
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.+. +.++.+++++.++++.|.+++...+||+ +++|+++|+++..|+++
T Consensus 51 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence 34688999887 8899999999999999999999999999 78899999999999764
No 128
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.25 E-value=1.3e-05 Score=68.22 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=96.5
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCC-----ccchhhhhcc-CCCeEEE
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPK-----YTRVAEIMTD-ENKLITL 147 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~-----~~~v~~im~~-~~~~~~v 147 (208)
++.+.+..++.++...+..+++..+||.+ .+.+.+..++|.+.+++.+........ ..++.+.-.. -.++..+
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d-~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i 242 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVID-PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI 242 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeec-ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence 48999999999999999999999999994 266799999999999998766554321 2334333211 1158899
Q ss_pred cCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491 148 PSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 148 ~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~ 191 (208)
..++++.+|++.|...+++.+||++.. .+|.++..|+.....+.
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 999999999999999999999999976 99999999999988764
No 129
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.25 E-value=3.5e-06 Score=57.86 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=49.0
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+++++|.+. +.++.+++++.++++.|.+++...+||+ +++++++|+|+.+++++
T Consensus 52 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 578888877 7889999999999999999999999999 77889999999999764
No 130
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.25 E-value=3.4e-06 Score=59.18 Aligned_cols=56 Identities=30% Similarity=0.518 Sum_probs=50.9
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|.+.+.+.+||+ +++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence 46788999887 8999999999999999999999999999 67789999999999864
No 131
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.23 E-value=4e-06 Score=57.72 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=50.0
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.+++++|.+. +.++++++++.++.+.|.+.+...+||+ +++|+++|+++.+|+++
T Consensus 54 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence 4688999887 8999999999999999999999999999 77889999999999763
No 132
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=3.3e-06 Score=59.53 Aligned_cols=56 Identities=30% Similarity=0.535 Sum_probs=50.9
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|..+ +..+.+++++.++.+.|.+++...+||+ +++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence 56788999877 8999999999999999999999999999 77899999999999764
No 133
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=4.2e-06 Score=58.04 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=49.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|... +.++.+++++.++++.|.+++...+||+ + +++++|+||.+|+++
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence 45799999887 8899999999999999999999999999 4 589999999999764
No 134
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=5e-06 Score=58.56 Aligned_cols=57 Identities=33% Similarity=0.585 Sum_probs=51.3
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...++.++|... +.++.+++++.++++.|.+.+...+||+ +++++++|+++..|++.
T Consensus 65 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence 456789999887 8999999999999999999999999999 67789999999999763
No 135
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.21 E-value=2.6e-06 Score=59.14 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=50.0
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.++.++|.+. +.++.+++++.++++.|.+++...+||+ +++++++|+|+..|++.
T Consensus 58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence 5789999887 8899999999999999999999999999 67799999999999763
No 136
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=3.5e-06 Score=59.72 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=41.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~ 119 (208)
+.++.+++++.+|++.|.+++...+||+ |++++++|+||..|+.
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di~ 121 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDVR 121 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHhh
Confidence 8899999999999999999999999999 7789999999999953
No 137
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=4.4e-06 Score=59.12 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=50.6
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. ++++++++++.++++.|.+.+...+||+ +++++++|+|+..|+++
T Consensus 69 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence 45788999887 8999999999999999999999999999 66789999999999864
No 138
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.21 E-value=3.7e-06 Score=58.70 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=49.3
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCC--ceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQ--QHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~--~~~iG~vt~~dl~~ 120 (208)
..+.++|.+. +.++.+++++.++++.|.+++...+||+ +++ ++++|+|+..|+++
T Consensus 58 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence 3488888877 8999999999999999999999999999 565 79999999999864
No 139
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=5.5e-06 Score=57.31 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=50.4
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...++.++|.+. +.++.+++++.++++.|.+++...+||+ + +++++|+||..|+++
T Consensus 54 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence 356789999887 8999999999999999999999999999 5 789999999999763
No 140
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.19 E-value=6.1e-06 Score=56.99 Aligned_cols=56 Identities=29% Similarity=0.490 Sum_probs=50.6
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.+. +.++.+++++.++++.|.+.+...+||+ +++|+++|+|+..|+++
T Consensus 55 ~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence 56789999887 8999999999999999999999999999 77789999999999764
No 141
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.18 E-value=4.6e-06 Score=69.54 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=52.1
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
+...+++++|.++ +.++.+++++.+|++.|.++++..+||+ + +++++|+||..|++++
T Consensus 266 ~~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHhc
Confidence 3456899999988 9999999999999999999999999999 4 6789999999998763
No 142
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=3.7e-06 Score=60.66 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=50.3
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|.+.+.+.+||+ + +|+++|+|+..|+++
T Consensus 80 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence 45789999887 8999999999999999999999999999 6 799999999999764
No 143
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=6.8e-06 Score=59.58 Aligned_cols=55 Identities=27% Similarity=0.457 Sum_probs=49.7
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.+. +..+.+++++.++++.|.+++...+||+ ++ ++++|+|+..|+++
T Consensus 80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence 45799999887 8899999999999999999999999999 55 89999999999764
No 144
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.17 E-value=4.8e-06 Score=72.04 Aligned_cols=81 Identities=25% Similarity=0.509 Sum_probs=70.1
Q ss_pred EEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHH
Q 028491 110 AGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVR 186 (208)
Q Consensus 110 iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~ 186 (208)
-|.+...+ +.++.+-....+.+++++|+++.++..++.+.+..++.+.+.+++++++||.+++ ++|++..+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 47777776 3455555556789999999999999999999999999999999999999999954 999999999999
Q ss_pred HHHHhh
Q 028491 187 AVVEQQ 192 (208)
Q Consensus 187 ~~~~~~ 192 (208)
......
T Consensus 264 ~~~~~~ 269 (429)
T COG1253 264 ALLDGQ 269 (429)
T ss_pred HHhcCc
Confidence 998764
No 145
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=5.8e-06 Score=57.21 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=49.5
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+.++|... +.++.+++++.++.+.|.+++...+||+ +++++++|+++..|+.+
T Consensus 56 ~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhhc
Confidence 4688999877 8999999999999999999999999999 67789999999999753
No 146
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.16 E-value=6.1e-06 Score=57.61 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=48.1
Q ss_pred ccHHHhhcccCCCCCCCeEEecC--CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRS--DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~--~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++++|.+. +.++.. ++++.++++.|.+++...+||+ +++++++|+||..|+++
T Consensus 57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence 4588999877 566655 9999999999999999999999 77889999999999764
No 147
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.16 E-value=4e-06 Score=58.48 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=49.0
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+... +.++.+++++.+|++.|.+++.+.+||+ +++++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~-----~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAK-----LVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhccccc-----ceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence 3568888875322 5689999999999999999999999999 67789999999999753
No 148
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=4.1e-06 Score=58.19 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=49.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...+.++|.+. +.++.+++++.++.+.|.+++...+||+ ++ |+++|+||..|+++
T Consensus 59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence 45788999887 8899999999999999999999999999 55 89999999999864
No 149
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.15 E-value=6.2e-06 Score=57.15 Aligned_cols=55 Identities=22% Similarity=0.456 Sum_probs=49.4
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.+++..|.+++...+||+ ++ ++++|+||..|++.
T Consensus 56 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence 35788999887 8899999999999999999999999999 55 89999999999753
No 150
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.15 E-value=7.1e-06 Score=56.77 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=49.7
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|... +.++.+++++.++++.|.+++.+.+||+ ++ ++++|+++..|+++
T Consensus 56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence 45789999887 8999999999999999999999999999 55 89999999999763
No 151
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.15 E-value=6.8e-06 Score=72.20 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=53.3
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
...+++++|++..+ ++++.+++++.+|++.|.++++..+||+ |++++++|+||.+|+++.
T Consensus 159 ~~~~V~dIMt~~~~-----~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFEK-----LVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCCC-----eEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence 35689999997322 8899999999999999999999999999 788999999999998874
No 152
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.14 E-value=7.4e-06 Score=56.47 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=48.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecC-CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRS-DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~-~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+ ++++.++++.|.+.+...+||+ +++++++|+|+..|++.
T Consensus 53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence 45789999876 666667 9999999999999999999999 77899999999999764
No 153
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.14 E-value=6.7e-06 Score=57.00 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=50.9
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCC-CceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGE-QQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~-~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|.+.+...+||+ ++ .++++|+++..|++.
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence 36899999988 8999999999999999999999999999 56 789999999999763
No 154
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=4.6e-06 Score=59.43 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=47.0
Q ss_pred ccccHHHhhcccCCCCCCCeEEe----cCCchHHHHHHHHHhcCCcEEEEEecCCC-ceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCC----RSDDTVEDAVKNMAQHNIGSLVVLKPGEQ-QHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v----~~~~tl~~a~~~m~~~~~~~~pVv~~d~~-~~~iG~vt~~dl~~ 120 (208)
...+++++|.+... .+.+ .+++++.++++.|.+++...+||+ |++ ++++|+||..|+++
T Consensus 62 ~~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence 35679999987611 1223 368999999999999999999999 565 79999999999764
No 155
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.14 E-value=7.7e-06 Score=55.93 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=49.0
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~ 119 (208)
...+.++|.+. +.++.+++++.++++.|.+++...+||+ ++ ++++|+||..|++
T Consensus 50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence 34688999887 8999999999999999999999999999 55 9999999999975
No 156
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=9.3e-06 Score=56.16 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=49.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.++ +.++.+++++.++++.|.+.+...+||+ ++ ++++|+|+..|+++
T Consensus 58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence 45789999877 8999999999999999999999999999 55 89999999999764
No 157
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=5.6e-06 Score=58.23 Aligned_cols=56 Identities=30% Similarity=0.536 Sum_probs=50.4
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...++.++|... +.++.+++++.++++.|.+.+...+||+ ++ ++++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence 456788999877 8999999999999999999999999999 56 89999999999764
No 158
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.13 E-value=7.3e-06 Score=68.17 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=52.0
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
..+++++|.++ +.++.+++++.+|++.|.+++...+||+ |++++++|+|+..|++++
T Consensus 262 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHhc
Confidence 45689999988 8999999999999999999999999999 777899999999998763
No 159
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=7.9e-06 Score=58.21 Aligned_cols=58 Identities=29% Similarity=0.573 Sum_probs=50.0
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...+.++|.++ ++++.+++++.++++.|.+++...+||++.+++++++|+||..|+++
T Consensus 70 ~~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45688999887 89999999999999999999999999994224689999999999764
No 160
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=5.2e-06 Score=59.10 Aligned_cols=45 Identities=16% Similarity=0.413 Sum_probs=42.2
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+.++++++++.+|++.|.+++...+||+ +++++++|+||..|+++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence 8899999999999999999999999999 77799999999999864
No 161
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=1e-05 Score=55.90 Aligned_cols=54 Identities=26% Similarity=0.521 Sum_probs=49.0
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.++++|.++ +.++.+++++.++++.|.+++...+||+ +++++++|+|+..|+++
T Consensus 56 ~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhhh
Confidence 488888877 8899999999999999999999999999 78899999999999753
No 162
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.12 E-value=1.1e-05 Score=66.41 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=58.4
Q ss_pred CcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491 53 GLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ 125 (208)
Q Consensus 53 ~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~ 125 (208)
..++.++..+|+++ +.++.+.+|+..+.+.|-..++.-+||+ +++.+++|+||++|+++++...
T Consensus 245 ~~~~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 245 KKPSTTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CCCCccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHHh
Confidence 34577899999998 9999999999999999999999999999 8999999999999999987543
No 163
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=8.8e-06 Score=56.42 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=49.8
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.+++++|.+. +.++.+++++.++++.|.+.+...+||+ +++++++|+++..|+++
T Consensus 58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 3589999887 8899999999999999999999999999 67799999999999764
No 164
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.12 E-value=1.1e-05 Score=55.79 Aligned_cols=55 Identities=31% Similarity=0.538 Sum_probs=49.7
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.++.++|... +.++.+++++.++++.|.+.+...+||+ +++++++|+|+..|+++
T Consensus 55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence 5688898877 8999999999999999999999999999 67789999999999764
No 165
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.11 E-value=1.1e-05 Score=46.51 Aligned_cols=46 Identities=30% Similarity=0.525 Sum_probs=41.4
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
+.++.+++++.++.+.|.+++...+||+ +++++++|+++..++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence 5778999999999999999999999999 677899999999998653
No 166
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=7.8e-06 Score=57.63 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=41.9
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+.++.+++++.++++.|.+++.+.+||+ +++++++|+||..|+++
T Consensus 75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~ 119 (120)
T cd04641 75 VRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ 119 (120)
T ss_pred CeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence 7899999999999999999999999999 77789999999999764
No 167
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.11 E-value=9.4e-06 Score=58.25 Aligned_cols=54 Identities=30% Similarity=0.511 Sum_probs=49.0
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.++.++|.++ +..+.+++++.++.+.|.+.+...+||+ ++ ++++|++|..|+++
T Consensus 78 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence 3788999887 8999999999999999999999999999 56 99999999999764
No 168
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.11 E-value=6.5e-06 Score=56.01 Aligned_cols=57 Identities=14% Similarity=0.379 Sum_probs=48.2
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
-.+.++++... .+.++.+++++.++.+.|.+++...+||+ +++++++|+|+.+|+++
T Consensus 39 iv~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~ 95 (96)
T cd04614 39 IITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EEEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 45666766543 16889999999999999999999999999 67789999999999864
No 169
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.10 E-value=1.2e-05 Score=55.66 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=49.3
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.++ +..+.+++++.++++.|.+++...+||+ + +++++|+|+..|+++
T Consensus 56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~-~~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVR--E-GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEe--e-CCEEEEEEEhHHhhc
Confidence 45788999887 8899999999999999999999999999 4 489999999999764
No 170
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=6.8e-06 Score=57.27 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=47.5
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+++++|.+. +.++.+++++.++++.|.+.+ .+||+ +++++++|++|..|+++
T Consensus 62 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTD-------VPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCC-------CceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence 45789999988 899999999999999998755 58999 78899999999999764
No 171
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.08 E-value=1.2e-05 Score=55.63 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=48.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|.+++...+||+ +++ +++|+|+..|+++
T Consensus 57 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence 45788999877 8899999999999999999999999999 554 8999999999763
No 172
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.08 E-value=1.4e-05 Score=55.21 Aligned_cols=55 Identities=33% Similarity=0.578 Sum_probs=49.7
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+.++|.++ +.++.+++++.++++.|.+++...+||+ +++++++|+|+..|+++
T Consensus 56 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence 4678888887 8999999999999999999999999999 67799999999999764
No 173
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=1.4e-05 Score=55.29 Aligned_cols=56 Identities=25% Similarity=0.470 Sum_probs=50.2
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.++ +.++.+++++.++.+.|.+++...+||+ +++++++|+++..|+++
T Consensus 56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence 35788999887 8999999999999999999999999999 77799999999999764
No 174
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=1.5e-05 Score=56.22 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=50.0
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.+++++|..+ +.++.+++++.++++.|.+++...+||+ +++++++|+++..|+++
T Consensus 67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence 4688899887 8999999999999999999999999999 77799999999999764
No 175
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.04 E-value=1e-05 Score=55.54 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=47.5
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
++.++|.+. +.++.+++++.++++.|.+++...+||+ + +++++|++|..|++.
T Consensus 51 ~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence 577888877 8899999999999999999999999999 5 589999999999764
No 176
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.04 E-value=1.8e-05 Score=55.58 Aligned_cols=56 Identities=36% Similarity=0.533 Sum_probs=50.3
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...++.++|.+. +.++.+++++.++++.|.+.+...+||+ ++ ++++|+++..|+++
T Consensus 65 ~~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence 356789999887 8999999999999999999999999999 55 89999999999764
No 177
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.02 E-value=2.4e-05 Score=45.03 Aligned_cols=45 Identities=29% Similarity=0.689 Sum_probs=40.6
Q ss_pred eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHH
Q 028491 144 LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAV 188 (208)
Q Consensus 144 ~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~ 188 (208)
+.++.+++++.++++.|...+.+.+||+++ + ++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999987 4 99999999998765
No 178
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.00 E-value=1.8e-05 Score=54.69 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=46.8
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+.++|. . +.++.+++++.++++.|.+++.+.+||+ +++++++|+||..|++.
T Consensus 57 ~~~~~~~~-~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR-P-------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc-C-------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhhc
Confidence 35666664 4 6889999999999999999999999999 67899999999999753
No 179
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.99 E-value=0.00012 Score=64.61 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=54.2
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV 123 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~ 123 (208)
..+|+++|++... ++++.+++++.+|++.|.+++...+||+ |++++++|+||.+||++.+.
T Consensus 162 ~~~V~eIMt~~~~-----lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 162 ETKLSEVMTSDDD-----LVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred CCcHHHHhccCCC-----cEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence 5679999986533 6799999999999999999999999999 78899999999999988653
No 180
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.99 E-value=1.6e-05 Score=69.20 Aligned_cols=100 Identities=9% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCceEEEeechHHHHHH--HHhcCC-----CCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--
Q 028491 104 GEQQHIAGIFTERDYLRK--IVGQGR-----SPKYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-- 174 (208)
Q Consensus 104 d~~~~~iG~vt~~dl~~~--~~~~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-- 174 (208)
|...++.-.+...+++.. +..... .....+++++|.+ ++.++.+++++.++++.|.+++++.+||+|++
T Consensus 300 d~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~ 377 (454)
T TIGR01137 300 DSIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGK 377 (454)
T ss_pred CCCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 555566665555554332 111110 1235679999987 89999999999999999999999999999864
Q ss_pred eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491 175 IVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205 (208)
Q Consensus 175 ~vGiit~~dll~~~~~~~~~~~~~~~~~~~~ 205 (208)
++|+|+..|+++.+..........+.+++..
T Consensus 378 ~~Givt~~dl~~~~~~~~~~~~~~v~~im~~ 408 (454)
T TIGR01137 378 VLGSVTLRELLSALFAGKANPDDAVSKVMSK 408 (454)
T ss_pred EEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence 9999999999997754321112245555544
No 181
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.97 E-value=1.7e-05 Score=54.83 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=44.4
Q ss_pred hhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 62 VLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 62 ~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+|.++ +.++++++++.++.+.|.+++...+||+ ++++++|+|+..|+++
T Consensus 56 ~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~pVv---~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS-------PFTVSPRTSLEKVHQLFRKLGLRHLLVV---DEGRLVGIITRKDLLK 104 (105)
T ss_pred hccCC-------CceECCCCcHHHHHHHHHHcCCCEEEEE---ECCeEEEEEEhhhhhc
Confidence 77776 8899999999999999999999999999 4689999999999764
No 182
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.95 E-value=2.1e-05 Score=70.63 Aligned_cols=74 Identities=12% Similarity=0.326 Sum_probs=59.6
Q ss_pred CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhc
Q 028491 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRG 205 (208)
Q Consensus 130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~ 205 (208)
...+++|+|++ ++.++++++++.++.+.|.+++.+.+||+|++ ++|+|+.+|+.+.+..........++++++.
T Consensus 445 ~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~ 520 (574)
T PRK01862 445 RTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT 520 (574)
T ss_pred hhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence 35689999988 78899999999999999999999999999875 9999999999986654322223455666654
No 183
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.95 E-value=4.3e-05 Score=55.41 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=44.4
Q ss_pred CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHh
Q 028491 143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~ 191 (208)
++.++++++++.+|++.|.+.+.+.+||+|++ ++|+||..|+++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~ 52 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTN 52 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhc
Confidence 57899999999999999999999999999874 99999999999988643
No 184
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.94 E-value=3.1e-05 Score=53.18 Aligned_cols=49 Identities=24% Similarity=0.534 Sum_probs=44.4
Q ss_pred CeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHh
Q 028491 143 KLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 143 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~ 191 (208)
++.++++++++.++.+.|.+++.+.+||++++ ++|+++..|+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~ 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEG 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcc
Confidence 57789999999999999999999999999889 99999999999987543
No 185
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.89 E-value=3.1e-05 Score=54.18 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=48.2
Q ss_pred ccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCc---EEEEEecCCCceEEEeechHHHHH
Q 028491 55 ENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIG---SLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 55 ~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~---~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...+++++|.+. +.++.+++++.++.+.|.+++.. ..||+ +++++++|+|+..|+++
T Consensus 59 ~~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence 356799999888 89999999999999999887753 44678 67899999999999764
No 186
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=53.67 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=47.8
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHh-cCCcEEEEEecCCCc-eEEEeechHHH
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQ-HNIGSLVVLKPGEQQ-HIAGIFTERDY 118 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~~pVv~~d~~~-~~iG~vt~~dl 118 (208)
.+.++|..+ +.++.++.++.++.+.|.+ +++..+||+ ++++ +++|+++..|+
T Consensus 63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence 689999987 8999999999999999999 699999999 6775 99999999986
No 187
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.88 E-value=0.00011 Score=64.65 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=52.7
Q ss_pred cccHHHhhcc--cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 56 NISVAEVLMT--KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 56 ~~~v~~~m~~--~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
..+++++|++ + ++++.+++++.++.++|.+++...+||+ |++++++|+||.+||++.
T Consensus 158 ~~~V~diMt~~~~-------lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPREK-------LVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcCC-------ceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence 4679999997 5 8999999999999999999999999999 788999999999998875
No 188
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.87 E-value=1.8e-05 Score=68.86 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=66.6
Q ss_pred ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcC
Q 028491 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRGE 206 (208)
Q Consensus 131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~ 206 (208)
.+.+.++++. ++++|++..++.+|.+.|.+.|++.+.|++++ ..||||.+|+.+++.........+++++|..+
T Consensus 148 ~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p 223 (610)
T COG2905 148 LTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP 223 (610)
T ss_pred HHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence 3567888888 89999999999999999999999988888776 99999999999999998888888999888754
No 189
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.81 E-value=6.5e-05 Score=54.84 Aligned_cols=55 Identities=27% Similarity=0.494 Sum_probs=49.2
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..++.++|.+. +.++.+++++.++++.|.+++...+||+ ++ ++++|+|+..|++.
T Consensus 88 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence 45788899887 8999999999999999999999999999 55 89999999999763
No 190
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.81 E-value=7.3e-05 Score=51.01 Aligned_cols=53 Identities=30% Similarity=0.510 Sum_probs=47.9
Q ss_pred HHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 59 VAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 59 v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+.++|..+ +.++.+++++.++.+.|.+.+...+||+ +++++++|+++..|+++
T Consensus 60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence 66788777 8899999999999999999999999999 77899999999999764
No 191
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.81 E-value=0.00015 Score=61.80 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=76.5
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
..-++++++|.+. ......+-+ -+++. ++.+.++|+ |+ |+++..+...+ ... .....
T Consensus 271 ~~~l~a~~~m~~~-------~~~~~~~~~--~~~~~---~~~~~~~~~--~~-----~~~~~~~~~~~-~~~---~~~~~ 327 (382)
T TIGR03415 271 LNVLTARSLMRPL-------TDLEHVDGG--WCVSD---RRDTWLFTI--DK-----QVRRRDAKLPV-QAW---AAEQE 327 (382)
T ss_pred ccceeHHHHhccc-------ccccccCcc--hhhhh---cccceeEee--cc-----ceecccchHhH-hhc---ccccc
Confidence 4456788888554 222222222 33333 788899999 44 88887775432 221 02335
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~ 190 (208)
+.+ +.. ...++++++++.+++..+.+++. .++|+|++ ++|+|++.++++.+.+
T Consensus 328 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 328 VES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVENGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeCCeEEEEEeHHHHHHHHhc
Confidence 666 444 58899999999999999998776 58888888 9999999999998853
No 192
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.75 E-value=5.1e-05 Score=61.39 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=50.4
Q ss_pred cchhhhhccCCC-eEEEcCCCCHHHHHHHHHhcCCCEeeeecC-c-eeEEEEHHHHHHHHH
Q 028491 132 TRVAEIMTDENK-LITLPSDANILHAMQLMTDKHIRHVPVIDG-R-IVGMISIVDVVRAVV 189 (208)
Q Consensus 132 ~~v~~im~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~-~vGiit~~dll~~~~ 189 (208)
.+++++|.+ + +.++++++++.++++.|.+.+.+.+||+|+ + ++|+|+..|+.+.+.
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 578899987 6 899999999999999999999999999986 4 999999999998654
No 193
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.72 E-value=0.00011 Score=50.32 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=47.3
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
..+.++|.+. +.++.+++++.++.+.|.+++...+||+ + +++++|+++..|++.
T Consensus 52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence 3577888877 8889999999999999999999999999 4 479999999999753
No 194
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.70 E-value=9e-05 Score=64.57 Aligned_cols=58 Identities=22% Similarity=0.400 Sum_probs=53.0
Q ss_pred cccHHHhhcc-cCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491 56 NISVAEVLMT-KGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122 (208)
Q Consensus 56 ~~~v~~~m~~-~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~ 122 (208)
..+++++|++ + ++++++++++.++.+.|.+++...+||+ |++++++|+||..||++.+
T Consensus 142 ~~~V~dvm~~~~-------~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTREE-------VITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCCC-------CEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence 4578999984 6 8999999999999999999999999999 8999999999999998764
No 195
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00013 Score=63.16 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=55.7
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV 123 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~ 123 (208)
-+...++++|.+. ++++.+++..+++++++++++...+||| |++++++|+||..|++.-+-
T Consensus 193 ~~~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 193 EPDELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred CcHhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence 3467889999998 9999999999999999999999999999 89999999999999887543
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.39 E-value=0.00055 Score=58.02 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=49.3
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHh
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVG 124 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~ 124 (208)
++.+.+.+. +.++.+++++.+++..|.+++.. +||+ |++|+++|+|+..++++++..
T Consensus 303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence 355666655 78899999999999999999988 9999 889999999999999887643
No 197
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0014 Score=59.17 Aligned_cols=110 Identities=12% Similarity=0.078 Sum_probs=72.2
Q ss_pred hhhhhhhhhhHHHHHHhhhcCcccc-ccc-ccccc--cccccCCCCCccccCcccccHHHhhcccCCCCCCCeEEecCCc
Q 028491 6 KGVRTCQEILKGAILEHHQGRYVVE-GRK-TCSRF--GCVISSSSSPTEEKGLENISVAEVLMTKGDDKVGSWLCCRSDD 81 (208)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~ 81 (208)
|+..+...++|-.++..+.+.-..+ ..- +...+ .+....-..+-.+....++.|+++|-++ +.++..++
T Consensus 533 ElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~d-------v~yI~k~~ 605 (931)
T KOG0476|consen 533 ELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTD-------VKYITKDT 605 (931)
T ss_pred eeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccc-------ceeeeccC
Confidence 4455666777777776665422211 111 11111 1111100011222336678999999999 99999999
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHH
Q 028491 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKI 122 (208)
Q Consensus 82 tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~ 122 (208)
|..|..+.+..+....+|+|++-++.-++|.|.++.|...+
T Consensus 606 Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 606 TYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred cHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 99999999987779999999765667899999999976544
No 198
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00066 Score=55.85 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=82.3
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTR 133 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~ 133 (208)
..-.+++++|.+. .. ...-.+...-..+...+.......+.++ +..++.+|+++..++..+
T Consensus 271 ~~VltA~~IM~~~-~~----~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~------------ 331 (386)
T COG4175 271 SRVLTAKDIMRRP-DL----LIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA------------ 331 (386)
T ss_pred hheeeHHHhhccc-cc----ccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc------------
Confidence 4456778888852 11 1222223333457778888777777888 667779999999986542
Q ss_pred hhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHH
Q 028491 134 VAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVE 190 (208)
Q Consensus 134 v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~ 190 (208)
.+.. ++.++++++++.+.+....+.+. .++|+|++ ++|+|++..++.++..
T Consensus 332 ---~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ---ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ---cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 3444 68899999999999999998877 57888876 9999999999998864
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.002 Score=55.32 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=49.2
Q ss_pred cHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcC
Q 028491 58 SVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQG 126 (208)
Q Consensus 58 ~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~ 126 (208)
.+++.+.+. ..++++++++.+++..+.+.... +||+ |++|+++|+|+..++++.+...+
T Consensus 338 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 338 GLDAALIDA-------PLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred chhhhhccC-------CceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence 345555555 78899999999999999987766 9999 88999999999999998875544
No 200
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0012 Score=51.82 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=56.5
Q ss_pred CccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc---eeEEEEHHHHHHHHHHh
Q 028491 130 KYTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR---IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 130 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~---~vGiit~~dll~~~~~~ 191 (208)
.+..|+++|.++....++..+.++.+.+..+.++..++.||+.++ +.|++-.+|+++++...
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC
Confidence 356799999988889999999999999999999999999999776 99999999999998654
No 201
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=96.33 E-value=0.007 Score=53.38 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=94.5
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHH-HHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCcc
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVE-DAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYT 132 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~-~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~ 132 (208)
+....++++|++-.+ +.....+..+. +........+++.+||.+. +....+|..-...++. +..........
T Consensus 201 l~ek~~~evmtpi~~-----~f~l~~n~~l~~~~~~~i~~~g~sripv~~~-~~~~~i~~~L~~~~~~-~~~~~~~~~~~ 273 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIED-----VFALDANTKLDRETVGEIVKHGYSRIPVYEQ-EPKNKIGGLLVMNLLR-LLQVEVPLEPL 273 (498)
T ss_pred HHHHHHHHhccchhh-----heeeccccccchHHHhhHhhcCcceeeeccC-cccchhhHHHHhhhhh-hhccccccccc
Confidence 567889999999855 78888888887 4555556899999999953 3334444433344333 33222244567
Q ss_pred chhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHH
Q 028491 133 RVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVE 190 (208)
Q Consensus 133 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~ 190 (208)
++++.+.. ....++.++++.+.++.|.+.+.|.+.|.++. -+|+++..|+ ....+
T Consensus 274 ~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~~~-~~~~~ 329 (498)
T KOG2118|consen 274 PVSESALL--RLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLEDL-EEVVK 329 (498)
T ss_pred cchhhhcc--ccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEeccch-hhhcc
Confidence 88888887 79999999999999999999999888888866 9999999998 55543
No 202
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0052 Score=54.59 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=49.6
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
.....+|++. +.++.+++++..+..++++-+..++.|+ ++.++.+|++|++|+++
T Consensus 690 vDl~p~~n~s-------PytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 690 VDLHPFMNPS-------PYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR 744 (762)
T ss_pred cccccccCCC-------CcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence 4556788888 9999999999999999999999999999 77888899999999874
No 203
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.017 Score=49.06 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=52.3
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
...+.++|++. .++.+.+-++.++-+.+.+++-..+||| +++++++.++++.||.+.
T Consensus 170 ~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhhh
Confidence 45678999998 8999999999999999999999999999 899999999999998764
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.24 E-value=0.051 Score=46.46 Aligned_cols=46 Identities=9% Similarity=0.219 Sum_probs=39.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV 123 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~ 123 (208)
..++++++++.+++..+.+.+.. ++|+ |+ |+++|+|+..+++.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGA-ILLV--EN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCC-eEEe--eC-CeEEEEEeHHHHHHHHh
Confidence 77899999999999998887654 7888 55 99999999999998753
No 205
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.12 Score=46.30 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=50.8
Q ss_pred cccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH
Q 028491 56 NISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK 121 (208)
Q Consensus 56 ~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~ 121 (208)
....+++|... +.++...++..-+++++++-+...+.|. ++|++.|+||.+|+++.
T Consensus 638 ~~~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 638 RLDLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH 693 (696)
T ss_pred CcCceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence 56678888888 9999999999999999999999999998 78999999999998874
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.85 E-value=0.16 Score=46.46 Aligned_cols=61 Identities=11% Similarity=0.270 Sum_probs=53.8
Q ss_pred ccchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc----eeEEEEHHHHHHHHHHhhH
Q 028491 131 YTRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR----IVGMISIVDVVRAVVEQQK 193 (208)
Q Consensus 131 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----~vGiit~~dll~~~~~~~~ 193 (208)
...|+++|.+ ++..+..+++..+.-+.+....++.+|+|++. ++|.|.++.+...+..+..
T Consensus 587 ~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 587 TVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred EEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 4578899998 89999999999999998888779999999864 9999999999999987543
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.23 E-value=0.26 Score=39.79 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=45.4
Q ss_pred cccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 54 LENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 54 ~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+...++.+.|.+..... --.+.....-.+++..+...+.+.+||+ |++|+++|.+|..+|+.
T Consensus 246 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPAD---GEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhccccccc---CCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence 55677888887752110 1123345555667888888899999999 89999999999999875
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.71 E-value=1.6 Score=35.36 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHH--------HHhcC----CCCCccchhhhhccCC--CeEEEc
Q 028491 83 VEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRK--------IVGQG----RSPKYTRVAEIMTDEN--KLITLP 148 (208)
Q Consensus 83 l~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~--------~~~~~----~~~~~~~v~~im~~~~--~~~~v~ 148 (208)
+.||+++- +.+.|. ++|+++-+=+..+|+.. ++... .......+.+.|.... .--.+.
T Consensus 196 idEA~kLa-----dri~vm---~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 267 (309)
T COG1125 196 IDEALKLA-----DRIAVM---DAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLL 267 (309)
T ss_pred HHHHHhhh-----ceEEEe---cCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccc
Confidence 44555543 345666 46889989897776643 22222 1112334555554410 011122
Q ss_pred CCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHH
Q 028491 149 SDANILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRA 187 (208)
Q Consensus 149 ~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~ 187 (208)
......+++..+...+...+||+|++ ++|.||..+++..
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 33455668888888999999999987 9999999999864
No 209
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.81 E-value=0.72 Score=38.48 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=40.6
Q ss_pred eEEecCCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHH
Q 028491 74 WLCCRSDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIV 123 (208)
Q Consensus 74 ~~~v~~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~ 123 (208)
+.++..++++.+.+..+.+... .++|+ |++++++|+++...++.++.
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~~-p~aVv--de~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAPC-PVAVV--DEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccCccchHHHHHHHHhcCCC-ceeEE--cCCCcEEEEecHHHHHHHHh
Confidence 6788999999999999877654 57899 89999999999999988764
No 210
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=63.02 E-value=22 Score=24.39 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=57.5
Q ss_pred chHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHH
Q 028491 81 DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLM 160 (208)
Q Consensus 81 ~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~ 160 (208)
.+..+|.+...+++--.+..+. .+... .-..+.+.+ ..+..|.+.+.. +.+.+..+.+-.++.++.
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~--~~~c~----~c~~~~~~v------l~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~ 69 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQ--SEDEF----DSQVLNRDL------WSNESVKEFIRE--NFIFWQCDIDSSEGQRFL 69 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEe--cCCcc----hHHHHHHHH------cCCHHHHHHHHh--CEEEEEecCCCccHHHHH
Confidence 4678888888776655555553 23221 222322222 234568888776 576666666434455555
Q ss_pred HhcCC---CEeeeecC--c-----eeEEEEHHHHHHHHHHh
Q 028491 161 TDKHI---RHVPVIDG--R-----IVGMISIVDVVRAVVEQ 191 (208)
Q Consensus 161 ~~~~~---~~lpVvd~--~-----~vGiit~~dll~~~~~~ 191 (208)
...++ ..+.+++. + +.|.++..++++.+.+.
T Consensus 70 ~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 70 QSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred HHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 54444 44556654 2 67999999999888654
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.50 E-value=21 Score=32.76 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=63.5
Q ss_pred ccHHHhhcccCCCCCCCeEEecCCch-HHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCC----CCc
Q 028491 57 ISVAEVLMTKGDDKVGSWLCCRSDDT-VEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRS----PKY 131 (208)
Q Consensus 57 ~~v~~~m~~~~~~~~~~~~~v~~~~t-l~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~----~~~ 131 (208)
..+.+.+... -..+....+ +.+..+.+...+ ..++++ |.+|.++++....+++..+...+.. +..
T Consensus 41 ~~~~~~~~~~-------~~ll~~a~~~l~~l~~~l~~~~-~~~~l~--D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E 110 (638)
T PRK11388 41 VTFASIYRRK-------KALLTLGQAALEDAWEYMADRE-CALLIL--DETGCILSRNGDPQTLQQLSALGFNDGTYCAE 110 (638)
T ss_pred HHHHHHHHHh-------HHHHHHHHHHHHHHHHHhcCCC-cEEEEE--cCCceEEEEeCCHHHHHHHHHcCCccCCccch
Confidence 3455565555 334555555 455555555555 677777 8999999999999977655332211 111
Q ss_pred -----cchhhhhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeecCc--eeEEEE
Q 028491 132 -----TRVAEIMTDENKLITLPSDANILHAMQLMTDKHIRHVPVIDGR--IVGMIS 180 (208)
Q Consensus 132 -----~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--~vGiit 180 (208)
.-++-.+... .++.|....-..+. +..-.+...||.|.+ ++|+|+
T Consensus 111 ~~~GTnaig~al~~~-~pv~v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 111 GIIGTNALSLAAISG-QPVKTMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred hccCcCHHHHHHhcC-CceEEecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 1122222212 45556555443333 334456689999864 999996
No 212
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=53.08 E-value=27 Score=31.39 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhcCCCEeeeecCc-eeEEEEHHHHHHHHHHhhHHHHHHH
Q 028491 151 ANILHAMQLMTDKHIRHVPVIDGR-IVGMISIVDVVRAVVEQQKGELKRL 199 (208)
Q Consensus 151 ~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~~dll~~~~~~~~~~~~~~ 199 (208)
..+..+.....+.|-..++|++++ +.|+|..+|+++-=..+--.+++++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~M 462 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKM 462 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhc
Confidence 357788888888888899999999 9999999999876544433444443
No 213
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=43.36 E-value=30 Score=31.12 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHH
Q 028491 79 SDDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 79 ~~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
...-+..+++...+.|-+-++|+ ++++++|+|..+|+++
T Consensus 411 ~p~~l~~~~~~vs~~GGTPL~V~---~~~~~~GVI~LkDivK 449 (681)
T COG2216 411 IPEDLDAAVDEVSRLGGTPLVVV---ENGRILGVIYLKDIVK 449 (681)
T ss_pred CCHHHHHHHHHHHhcCCCceEEE---ECCEEEEEEEehhhcc
Confidence 33457778888888888889999 6899999999999875
No 214
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=40.26 E-value=1.2e+02 Score=21.07 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHH--
Q 028491 82 TVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQL-- 159 (208)
Q Consensus 82 tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~-- 159 (208)
|..||++...+++--.+..+.++... .-....+.. ..+..+.+++.. +.+....+..-.+..+.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~------~~~~fc~~~------l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~ 70 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQ------DTDEFCRNT------LCAPEVIEYINT--RMLFWACSVAKPEGYRVSQ 70 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCc------cHHHHHHHH------cCCHHHHHHHHc--CEEEEEEecCChHHHHHHH
Confidence 67888888876654444444322221 111111222 224567777776 67777777665555444
Q ss_pred -HHhcCCCEeeee---cCc------eeEEEEHHHHHHHHHHhh
Q 028491 160 -MTDKHIRHVPVI---DGR------IVGMISIVDVVRAVVEQQ 192 (208)
Q Consensus 160 -~~~~~~~~lpVv---d~~------~vGiit~~dll~~~~~~~ 192 (208)
+.-.....+.++ ++. +-|.++..++++.+....
T Consensus 71 ~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 71 ALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred HhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 444555566666 443 788999999999886543
No 215
>PF14044 NETI: NETI protein
Probab=39.06 E-value=41 Score=20.44 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=19.8
Q ss_pred EecCCchHHHHHHHHHhcCCcEEEEE
Q 028491 76 CCRSDDTVEDAVKNMAQHNIGSLVVL 101 (208)
Q Consensus 76 ~v~~~~tl~~a~~~m~~~~~~~~pVv 101 (208)
.|.++.||.+++..|.+.|+ .||.
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 47799999999999999874 5555
No 216
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=38.33 E-value=1e+02 Score=19.80 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=17.9
Q ss_pred CcEEEEEecCCCceEEEeechHHHHHHH
Q 028491 95 IGSLVVLKPGEQQHIAGIFTERDYLRKI 122 (208)
Q Consensus 95 ~~~~pVv~~d~~~~~iG~vt~~dl~~~~ 122 (208)
...+-|+ +++|+.+|+++..+-++..
T Consensus 12 ~~~VrlI--~~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 12 APEVRLI--DEDGEQLGVMSLREALRLA 37 (76)
T ss_dssp -SEEEEE---TTS-EEEEEEHHHHHHHH
T ss_pred CCEEEEE--CCCCcEeceEEHHHHHHHH
Confidence 4567888 7888999999998866543
No 217
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=38.21 E-value=1.1e+02 Score=20.77 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=42.4
Q ss_pred ccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHH---hcCCcEEEEEecCC-Cce----EEEeechHHHHHHH
Q 028491 51 EKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMA---QHNIGSLVVLKPGE-QQH----IAGIFTERDYLRKI 122 (208)
Q Consensus 51 ~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~---~~~~~~~pVv~~d~-~~~----~iG~vt~~dl~~~~ 122 (208)
...+.+-.|.+.+... ++.+..+.+=.++.++.. -.+...+.++ +. +|+ +.|.++..+++..+
T Consensus 37 ~~vl~~~~v~~~l~~~-------~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i--~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 37 RDLWSNESVKEFIREN-------FIFWQCDIDSSEGQRFLQSYKVDKYPHIAII--DPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred HHHcCCHHHHHHHHhC-------EEEEEecCCCccHHHHHHHhCccCCCeEEEE--eCccCcEeEEEcCCCCHHHHHHHH
Confidence 3456677889999877 777776664345555444 4566777788 44 554 45999999987654
No 218
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=34.19 E-value=3.1e+02 Score=23.80 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=54.0
Q ss_pred CcEEEEEecCCCceEEEeechHHHHHHHHhcCCCCCccchhh-hhccCCCeEEEcCCCCHHHHHHHHHhcCCCEeeeec-
Q 028491 95 IGSLVVLKPGEQQHIAGIFTERDYLRKIVGQGRSPKYTRVAE-IMTDENKLITLPSDANILHAMQLMTDKHIRHVPVID- 172 (208)
Q Consensus 95 ~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~-im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd- 172 (208)
+..++|. ++ +.|.+|-+||+ .+- ...+.+ ++.+ .-.+++ |.++.++.+.+ ++..++|-.
T Consensus 306 v~v~~v~--n~---VagLlTg~Di~-~l~-------~~~~~d~~liP--~~~fld-d~t~~~~~~~l---~~~v~v~~~~ 366 (404)
T TIGR03278 306 VNVVPVK--KD---IACLITEDDLE-ELD-------LSEVKETVIIP--GRAFVH-DMVAEEILKRD---GVDRIVVRGP 366 (404)
T ss_pred EEEEEec--Cc---ccccchHHHHH-Hhc-------CCCCCCEEEec--Cccccc-cccHHHHHHHh---CCcEEEecCC
Confidence 5556666 33 89999999988 542 222333 3333 222333 66777766655 555554432
Q ss_pred -----Cc-eeEEEEHHHHHHHHHHhhHHHHHHHHH
Q 028491 173 -----GR-IVGMISIVDVVRAVVEQQKGELKRLNE 201 (208)
Q Consensus 173 -----~~-~vGiit~~dll~~~~~~~~~~~~~~~~ 201 (208)
++ .-|..|..+++++=.+...+-.+.++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T TIGR03278 367 DRLTADGEMSGGMTREEVLEFELEAFRELINLINF 401 (404)
T ss_pred ceeeecceecccccHHHHHHHHHHHHHHHHHHHHh
Confidence 23 788889999999887777766555543
No 219
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=28.69 E-value=34 Score=30.56 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=36.3
Q ss_pred ccchhhhhccCCCeEEEcCCCCHH-HHHHHHHhcCCCEeeeecCc
Q 028491 131 YTRVAEIMTDENKLITLPSDANIL-HAMQLMTDKHIRHVPVIDGR 174 (208)
Q Consensus 131 ~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~ 174 (208)
...++++|++...++.++.+..+. +.+....+++++++||.+++
T Consensus 203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~ 247 (498)
T KOG2118|consen 203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE 247 (498)
T ss_pred HHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc
Confidence 456788999877888888888875 66667778999999999976
No 220
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=28.39 E-value=57 Score=22.48 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=13.4
Q ss_pred cEEEEEecCCCceEEEeech
Q 028491 96 GSLVVLKPGEQQHIAGIFTE 115 (208)
Q Consensus 96 ~~~pVv~~d~~~~~iG~vt~ 115 (208)
-..||. |.+|+++|+|..
T Consensus 92 ~~~PV~--d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVY--DSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE---TTS-EEEEEEE
T ss_pred EEEeeE--CCCCcEEEEEEE
Confidence 368999 789999999874
No 221
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=27.07 E-value=52 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred HHHHhcCCCEeeeecCc--eeEEEEHHH
Q 028491 158 QLMTDKHIRHVPVIDGR--IVGMISIVD 183 (208)
Q Consensus 158 ~~~~~~~~~~lpVvd~~--~vGiit~~d 183 (208)
..|.+.++|++-|++.+ ++|.||...
T Consensus 2 r~ml~aKiHratVT~A~L~Y~GSitID~ 29 (126)
T COG0853 2 RTMLKAKIHRATVTEADLNYVGSITIDE 29 (126)
T ss_pred hhhhhhheeeeEEeecccceEEeEEECH
Confidence 46788999999999988 999999754
No 222
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=26.84 E-value=1.4e+02 Score=22.60 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=17.9
Q ss_pred CCcEEEEEecCCCceEEEeechHHHHH
Q 028491 94 NIGSLVVLKPGEQQHIAGIFTERDYLR 120 (208)
Q Consensus 94 ~~~~~pVv~~d~~~~~iG~vt~~dl~~ 120 (208)
+...+-++ +++|+-+|+++..+-+.
T Consensus 17 r~~evrlI--g~~GeqlGiv~~~eAL~ 41 (176)
T COG0290 17 RAREVRLI--GEDGEQLGIVSIEEALK 41 (176)
T ss_pred cccEEEEE--CCCCcEEcceeHHHHHH
Confidence 34566777 77788888888888655
No 223
>smart00594 UAS UAS domain.
Probab=26.55 E-value=1.6e+02 Score=20.40 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=41.8
Q ss_pred ccccCcccccHHHhhcccCCCCCCCeEEecCCchHHHHHHHHHhc---CCcEEEEEecCC-------CceEEEeechHHH
Q 028491 49 TEEKGLENISVAEVLMTKGDDKVGSWLCCRSDDTVEDAVKNMAQH---NIGSLVVLKPGE-------QQHIAGIFTERDY 118 (208)
Q Consensus 49 ~~~~~~~~~~v~~~m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~---~~~~~pVv~~d~-------~~~~iG~vt~~dl 118 (208)
..+..+..-.|.+++... ++....+.+-.+..+++... +...+.++.++. -+++-|.++..++
T Consensus 45 ~~r~vl~~~~V~~~i~~~-------fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l 117 (122)
T smart00594 45 FNRDVLCNEAVKSLIREN-------FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEEL 117 (122)
T ss_pred HHHHHccCHHHHHHHHcC-------EEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHH
Confidence 344557778889999877 77766666656666665554 556677774321 1145677777776
Q ss_pred HHH
Q 028491 119 LRK 121 (208)
Q Consensus 119 ~~~ 121 (208)
+..
T Consensus 118 ~~~ 120 (122)
T smart00594 118 MTF 120 (122)
T ss_pred HHh
Confidence 653
No 224
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.51 E-value=90 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=21.6
Q ss_pred CCeEEecCCchHHHHHHHHHhcCCcE
Q 028491 72 GSWLCCRSDDTVEDAVKNMAQHNIGS 97 (208)
Q Consensus 72 ~~~~~v~~~~tl~~a~~~m~~~~~~~ 97 (208)
+++.+++.++-+.+|.++...++-+.
T Consensus 50 GDp~tiSS~~EL~EA~rl~~~n~~~~ 75 (83)
T cd06404 50 GDPCTISSQMELEEAFRLYELNKDSE 75 (83)
T ss_pred CCceeecCHHHHHHHHHHHHhcCccc
Confidence 34899999999999999998776443
No 225
>CHL00199 infC translation initiation factor 3; Provisional
Probab=25.36 E-value=85 Score=24.04 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHH
Q 028491 81 DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDY 118 (208)
Q Consensus 81 ~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl 118 (208)
++..+|++...+.+.+-+.|-. +...-++-+++....
T Consensus 40 ~~~~eAl~~A~~~~lDLVeVs~-~a~PPVCKImdygK~ 76 (182)
T CHL00199 40 FTSEQAIQLAANQGLDLVLVSE-KSDPPVCRIIDYGKY 76 (182)
T ss_pred eeHHHHHHHHHHcCCCEEEECC-CCCCCeEEEeehHHH
Confidence 5677888888887777766662 223345566666554
No 226
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.44 E-value=1.2e+02 Score=18.41 Aligned_cols=34 Identities=6% Similarity=0.182 Sum_probs=25.8
Q ss_pred cCCCCHHHHHHHHHhcCCCEeeeecCc-eeEEEEH
Q 028491 148 PSDANILHAMQLMTDKHIRHVPVIDGR-IVGMISI 181 (208)
Q Consensus 148 ~~~~~l~~a~~~~~~~~~~~lpVvd~~-~vGiit~ 181 (208)
+...++.+.++...+.|++.+-++|-+ +-|....
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~ 46 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNLFGAVEF 46 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHH
Confidence 556678888888888888888888877 7665533
No 227
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=24.22 E-value=61 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.5
Q ss_pred HHHHhcCCCEeeeecCc--eeEEEEHHH
Q 028491 158 QLMTDKHIRHVPVIDGR--IVGMISIVD 183 (208)
Q Consensus 158 ~~~~~~~~~~lpVvd~~--~vGiit~~d 183 (208)
..|.+.++|++-|++.+ +.|.||...
T Consensus 3 r~mLksKIHratVT~a~L~Y~GSItID~ 30 (126)
T TIGR00223 3 RTMLQGKLHRATVTHANLNYEGSITIDE 30 (126)
T ss_pred hHhhhhhhcceEEeccccccceeEEECH
Confidence 56888999999999988 999999753
No 228
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=23.72 E-value=67 Score=20.21 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=17.8
Q ss_pred HhcCCCEee--eecCc--eeE-EEEHHHHHHHH
Q 028491 161 TDKHIRHVP--VIDGR--IVG-MISIVDVVRAV 188 (208)
Q Consensus 161 ~~~~~~~lp--Vvd~~--~vG-iit~~dll~~~ 188 (208)
.+.++..+| |+||. +.| +-+...+.+++
T Consensus 43 ~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 43 EKYGVMSVPALVINGKVVFVGRVPSKEELKELL 75 (76)
T ss_dssp HHTT-SSSSEEEETTEEEEESS--HHHHHHHHH
T ss_pred HHcCCCCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence 667777665 66887 999 77777666654
No 229
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.12 E-value=1.2e+02 Score=20.15 Aligned_cols=35 Identities=14% Similarity=0.352 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCcEEEEEecCCCc----eEEEeechHHHHHH
Q 028491 85 DAVKNMAQHNIGSLVVLKPGEQQ----HIAGIFTERDYLRK 121 (208)
Q Consensus 85 ~a~~~m~~~~~~~~pVv~~d~~~----~~iG~vt~~dl~~~ 121 (208)
+..+.+.-++...+.+. |.+| ++.|.++..++...
T Consensus 73 ~l~~~~~v~gtPt~~~~--d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFL--DKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp HHHHHTT--SSSEEEEC--TTTSCEEEEEESS--HHHHHHH
T ss_pred HHHHHcCCCccCEEEEE--cCCCCEEEEecCCCCHHHHHhh
Confidence 45555555678888888 6555 46788998887653
No 230
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=22.39 E-value=2.8e+02 Score=19.43 Aligned_cols=52 Identities=6% Similarity=0.166 Sum_probs=34.5
Q ss_pred CCceEEEeechHHHHHHHHhcCCCCCccchhhhhccCCCeEEEcCCCCHHHHHHHHHh
Q 028491 105 EQQHIAGIFTERDYLRKIVGQGRSPKYTRVAEIMTDENKLITLPSDANILHAMQLMTD 162 (208)
Q Consensus 105 ~~~~~iG~vt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~ 162 (208)
+++..+|+|...|-+--+...|-. .+.+.-.+ +++.++.+++..++.+.|.+
T Consensus 3 ~~~~~IaVIGD~Dtv~GF~LaGi~----~~~~~~~~--nf~~v~~~t~~eei~~~~~~ 54 (115)
T TIGR01101 3 EKGKLIAVIGDEDTVVGFLLGGIG----EINKNRHP--NFLVVDKNTTVSEIEDCFNR 54 (115)
T ss_pred CCCcEEEEEecHHHHHHHHHhCCC----cccccccc--ceeeecCCCCHHHHHHHHHH
Confidence 567789999999977665544422 11122123 78889998888777777665
No 231
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=21.61 E-value=73 Score=22.78 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHhcCCCEeeeecCc--eeEEEEHHH
Q 028491 158 QLMTDKHIRHVPVIDGR--IVGMISIVD 183 (208)
Q Consensus 158 ~~~~~~~~~~lpVvd~~--~vGiit~~d 183 (208)
..|.+.++|++-|++.+ +.|.||...
T Consensus 3 r~mLksKiHratVT~a~L~Y~GSitID~ 30 (126)
T PRK05449 3 RTMLKSKIHRATVTEADLNYEGSITIDE 30 (126)
T ss_pred hhhhhhcccceEEeccccccceeEEECH
Confidence 56888999999999988 999999753
No 232
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=21.38 E-value=3.1e+02 Score=19.44 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHHHHHHhc
Q 028491 81 DTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYLRKIVGQ 125 (208)
Q Consensus 81 ~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~~~~~~~ 125 (208)
.-+..|+++.++.....+.+. +..+.- +-.+..++++..+..
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~s--Gg~~~~-~~~~ea~~m~~~l~~ 62 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVS--GGQGPG-EGYSEAEAMARYLIE 62 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEc--CCCCCC-CCCCHHHHHHHHHHH
Confidence 356778888877766666666 332222 366777777665443
No 233
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=20.88 E-value=1.6e+02 Score=22.46 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCEeeeecCc--eeEEEEHHHHHHHHHHhhHHHHHHHHHhhhcCCC
Q 028491 152 NILHAMQLMTDKHIRHVPVIDGR--IVGMISIVDVVRAVVEQQKGELKRLNEFIRGEYY 208 (208)
Q Consensus 152 ~l~~a~~~~~~~~~~~lpVvd~~--~vGiit~~dll~~~~~~~~~~~~~~~~~~~~~y~ 208 (208)
.+.+|+..+.+.++.-++|+|.+ ..|..+..+. ..+.+.....++....-+++.||
T Consensus 35 g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f-~~~~~~m~~~l~~~gv~id~i~~ 92 (181)
T COG0241 35 GVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADF-DKLHNKMLKILASQGVKIDGILY 92 (181)
T ss_pred cHHHHHHHHHhCCCeEEEEECCCCccccCccHHHH-HHHHHHHHHHHHHcCCccceEEE
No 234
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=20.62 E-value=2.6e+02 Score=18.33 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.8
Q ss_pred cCCCceEEEeechHHHHHHHHhc
Q 028491 103 PGEQQHIAGIFTERDYLRKIVGQ 125 (208)
Q Consensus 103 ~d~~~~~iG~vt~~dl~~~~~~~ 125 (208)
.+++|++-|-||..|+..++..+
T Consensus 22 ~g~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 22 AGENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp BSSCSSBSSEBSHHHHHHHHHHC
T ss_pred ecCCcceecCcCHHHHHHHHHHh
Confidence 36678999999999999988776
No 235
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=20.45 E-value=1.3e+02 Score=22.84 Aligned_cols=39 Identities=5% Similarity=0.092 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHhcCCcEEEEEecCCCceEEEeechHHHH
Q 028491 80 DDTVEDAVKNMAQHNIGSLVVLKPGEQQHIAGIFTERDYL 119 (208)
Q Consensus 80 ~~tl~~a~~~m~~~~~~~~pVv~~d~~~~~iG~vt~~dl~ 119 (208)
-++..+|++...+.+.+-+.|-. +.+.-++=+++...+.
T Consensus 34 v~~~~eAl~~A~~~~lDLV~v~~-~~~PPVckI~dy~k~~ 72 (177)
T PRK00028 34 IVSTREALELAEEAGLDLVEISP-NAKPPVCKIMDYGKFK 72 (177)
T ss_pred ceeHHHHHHHHHHcCCCEEEECC-CCCCCEEEEEeHHHHH
Confidence 46788899998888887777652 3333456666666644
No 236
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=20.08 E-value=99 Score=19.43 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.2
Q ss_pred EEEEEecCCCceEEEeec
Q 028491 97 SLVVLKPGEQQHIAGIFT 114 (208)
Q Consensus 97 ~~pVv~~d~~~~~iG~vt 114 (208)
+.||. +++++++|++.
T Consensus 18 s~pi~--~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIY--DDDGKIIGVVG 33 (81)
T ss_dssp EEEEE--ETTTEEEEEEE
T ss_pred EEEEE--CCCCCEEEEEE
Confidence 56888 66888888854
Done!