BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028492
         (208 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803
           / Kazusa) GN=slr1645 PE=1 SV=2
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 103 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 162
           SG  L   Y +    ++ TLRE++ + P+D  N +   D+A+  I DY+S +R +    G
Sbjct: 27  SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85

Query: 163 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 206
            +S+  ++ A+ SLA +Y+  G + P+P ++K  +  +   AE+
Sbjct: 86  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128


>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis
           thaliana GN=At1g03600 PE=1 SV=1
          Length = 174

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 111 YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 167
           Y+K    ++  +R +L   K DP    N        +E+   +++ +R +K + G+ S+ 
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129

Query: 168 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 208
           ++  A+ +++  Y   GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170


>sp|E0T5V0|FTSP_EDWTF Cell division protein FtsP OS=Edwardsiella tarda (strain FL6-60)
           GN=ftsP PE=3 SV=1
          Length = 472

 Score = 35.8 bits (81), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 28/133 (21%)

Query: 30  SRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAE--------------D 75
           SR  V L  + A+++RR+++  S      ++  + GL P P+QA+              D
Sbjct: 225 SRGWVRLRLLNASNARRYLLQLSDGRPFFVIASDQGLLPAPLQADTLPLAPGERREVLID 284

Query: 76  MSNGQD-----EKEEGVVGAIKSLFDPNEKTKSGKVL---PKAYLKSARELVKTLRESLK 127
           MS G++      +  G++  ++ LF+P+    S +VL   P   L     +  TL   L 
Sbjct: 285 MSKGEEISITAGEAAGIMDRLRGLFEPSSMLVSTRVLTLRPTGLLPL---MTDTLPARLA 341

Query: 128 EDP---KDIANFR 137
            DP    D+ N R
Sbjct: 342 ADPLPEGDVVNNR 354


>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
           GN=UBP4 PE=1 SV=2
          Length = 365

 Score = 34.3 bits (77), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 50  SCSSTALVAILTFNCGLAPLPVQA-EDMSNGQDEKEEGVVGAIKSLFDP--NEKTKSGKV 106
           +C   +++  L F    AP   Q  E  +N + + EE ++  +  LF    ++K K+G +
Sbjct: 31  TCYCNSVLQALYF---CAPFREQLLEHYANNKADAEENLLTCLADLFSQISSQKKKTGVI 87

Query: 107 LPKAYLKSARELVKTLRESLKEDPKDIANFRRN 139
            PK +++  ++  +  R  + +D  +  N+  N
Sbjct: 88  APKRFVQRLKKQNELFRSYMHQDAHEFLNYLLN 120


>sp|Q8MI28|LBN_BOVIN Limbin OS=Bos taurus GN=EVC2 PE=2 SV=1
          Length = 1209

 Score = 32.7 bits (73), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 49  ISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEEGV--------VGAIKSLFDPNEK 100
           I  S T +  +L+       L +Q  + +   DE +  V        V +IK   D + K
Sbjct: 502 IQSSETRMQGLLSTASAQLTLLIQKHERAGYLDEDQMQVLLERAQTEVFSIKQKLDNDLK 561

Query: 101 TKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG---Q 157
            +  K+  K  +K  RE+++  +E  +E    IA     A  A E    YL  WRG   +
Sbjct: 562 QEKKKLHQKLIIKRRREMLQKHKEQRREQL-SIAE----ASGAAEDAGQYLGQWRGLMAE 616

Query: 158 KTVAGEESYVELEKA 172
            + A EE    L++A
Sbjct: 617 HSAALEELQERLDQA 631


>sp|Q65DX0|ATPF_BACLD ATP synthase subunit b OS=Bacillus licheniformis (strain DSM 13 /
           ATCC 14580) GN=atpF PE=3 SV=1
          Length = 172

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 78  NGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLK---EDPKD-- 132
           N   E+E+ + G I S    NE+ K      +A LK ARE  ++L E+ K   E  KD  
Sbjct: 43  NIMKEREDYITGEISSAEKKNEEAKKLIEEQQALLKEAREESQSLIENAKKLGEQQKDEI 102

Query: 133 IANFRRNADSAKESIRDYLSNWRGQKTVA 161
           I   R+ A+  KES R  +   R Q   A
Sbjct: 103 IKAARQEAERMKESARSEIVKERDQAVTA 131


>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
           / DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
          Length = 970

 Score = 32.0 bits (71), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 81  DEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNA 140
           +E     +G I   +DP +K K   ++  AYLK  +E VK  R    E  K I     N 
Sbjct: 442 EENIRNFLGKINYEYDPKKKAKG--LIAYAYLK-FKESVKKERRKAMEISKKIYEETGNI 498

Query: 141 DSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAG 184
           D A ++++D ++    ++T+   E    + K   +   F  + G
Sbjct: 499 DRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKERG 542


>sp|Q6DAA8|FTSP_ERWCT Cell division protein FtsP OS=Erwinia carotovora subsp. atroseptica
           (strain SCRI 1043 / ATCC BAA-672) GN=ftsP PE=3 SV=1
          Length = 471

 Score = 31.2 bits (69), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 19/97 (19%)

Query: 30  SRTHVVLPPVEAASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQDEKEE---- 85
           SR  V L  + A++SRR+V+  S    + ++  + GL P P+    +S    E+ E    
Sbjct: 225 SRGWVRLRLLNASNSRRYVMRLSDGRAMNVIASDQGLLPAPMAVNQLSLAPGERREILID 284

Query: 86  ---------------GVVGAIKSLFDPNEKTKSGKVL 107
                          G++  ++ LF+P+    S ++L
Sbjct: 285 MSQGEEVTLTAGESAGIMDRLRGLFEPSSILISTQIL 321


>sp|Q18AN9|ADDA_CLOD6 ATP-dependent helicase/nuclease subunit A OS=Clostridium difficile
           (strain 630) GN=addA PE=3 SV=1
          Length = 1275

 Score = 30.8 bits (68), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 110 AYLKSARELVKTLRESLKEDPKDI--ANFRRNADSAKESIRDYLSN 153
           +Y+K ++E  KT+R+  K+  + I  A F ++ DS +E I+ YL N
Sbjct: 298 SYIKESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIK-YLYN 342


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,925,434
Number of Sequences: 539616
Number of extensions: 2780225
Number of successful extensions: 7539
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 7526
Number of HSP's gapped (non-prelim): 50
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)