Query 028492
Match_columns 208
No_of_seqs 88 out of 90
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmf_A Photosystem II 11 kDa p 100.0 1.2E-43 4E-48 280.5 10.0 103 104-208 9-111 (115)
2 2y6x_A PSB27, photosystem II 1 100.0 2.8E-43 9.5E-48 277.7 9.6 103 104-208 5-107 (113)
3 2pq4_B Periplasmic nitrate red 88.8 0.22 7.6E-06 31.6 2.1 24 43-68 3-26 (35)
4 3nrh_A Uncharacterized protein 69.2 15 0.0005 30.7 7.2 130 41-188 31-174 (182)
5 1tex_A STF0 sulfotransferase; 53.2 8.2 0.00028 32.8 2.9 54 110-164 233-286 (287)
6 4fnv_A Heparinase III protein, 51.3 36 0.0012 32.9 7.3 66 138-203 178-245 (702)
7 4aay_B AROB; oxidoreductase, r 51.3 5 0.00017 32.5 1.2 14 42-55 9-22 (175)
8 2qgu_A Probable signal peptide 49.1 54 0.0018 26.8 7.1 67 117-203 37-103 (211)
9 4ebb_A Dipeptidyl peptidase 2; 41.8 19 0.00064 32.7 3.5 31 129-159 425-455 (472)
10 3vup_A Beta-1,4-mannanase; TIM 38.6 63 0.0022 25.1 5.7 50 140-189 134-220 (351)
11 2w7y_A FCSSBP, probable sugar 37.7 6.9 0.00024 33.2 0.0 22 43-65 3-24 (430)
12 2gmf_A Granulocyte-macrophage 37.1 13 0.00045 29.6 1.5 25 165-189 69-93 (127)
13 2dt7_A Splicing factor 3A subu 36.7 53 0.0018 20.8 4.1 30 160-190 6-36 (38)
14 1kqf_A FDH-N alpha, formate de 34.2 8.5 0.00029 38.2 0.0 27 43-69 3-29 (1015)
15 2qjy_C Ubiquinol-cytochrome C 32.1 9.6 0.00033 30.9 -0.0 14 42-55 8-21 (187)
16 1lbq_A Ferrochelatase; rossman 31.0 40 0.0014 30.1 3.8 56 146-203 23-90 (362)
17 1q90_R Cytochrome B6-F complex 30.9 13 0.00045 25.0 0.5 14 42-55 8-21 (49)
18 4hfk_B Putative uncharacterize 29.2 1.4E+02 0.0047 23.0 6.1 51 110-170 32-82 (105)
19 1pp9_E Ubiquinol-cytochrome C 28.9 20 0.0007 29.4 1.4 13 39-51 26-38 (196)
20 3n2z_B Lysosomal Pro-X carboxy 28.0 45 0.0015 30.3 3.7 28 129-156 418-445 (446)
21 1i5n_A Chemotaxis protein CHEA 27.9 2E+02 0.0068 21.8 11.8 97 107-203 8-125 (146)
22 3c75_L Methylamine dehydrogena 27.2 18 0.00061 30.7 0.8 21 41-61 20-40 (188)
23 4awe_A Endo-beta-D-1,4-mannana 26.9 94 0.0032 24.2 4.9 52 138-189 151-224 (387)
24 2db7_A Hairy/enhancer-OF-split 26.7 1.1E+02 0.0039 21.2 4.8 34 170-204 25-58 (64)
25 3rh2_A Hypothetical TETR-like 26.6 1.9E+02 0.0065 21.2 8.4 68 134-201 112-184 (212)
26 2kp7_A Crossover junction endo 25.2 23 0.00077 25.9 0.9 59 145-203 16-80 (87)
27 3mfq_A TROA, high-affinity zin 24.6 1E+02 0.0034 26.0 5.0 48 104-155 105-153 (282)
28 4ax2_A RAP1B; toxin, resistanc 23.9 83 0.0029 25.4 4.1 66 110-181 55-128 (142)
29 1pq4_A Periplasmic binding pro 23.5 13 0.00043 31.7 -0.8 65 104-172 134-206 (291)
30 1yvi_A Histidine-containing ph 23.5 1.1E+02 0.0039 23.2 4.7 40 107-146 46-85 (149)
31 2o1e_A YCDH; alpha-beta protei 23.3 13 0.00046 32.0 -0.7 66 103-172 133-206 (312)
32 3gi1_A LBP, laminin-binding pr 22.8 86 0.003 26.4 4.3 62 104-169 123-192 (286)
33 3hcn_A Ferrochelatase, mitocho 22.7 99 0.0034 27.6 4.8 58 146-203 20-85 (359)
34 1h6d_A Precursor form of gluco 22.0 19 0.00065 31.9 0.0 13 44-56 28-40 (433)
35 2fp1_A Chorismate mutase; alph 21.8 1E+02 0.0036 24.6 4.4 62 116-177 41-108 (166)
36 3us6_A Histidine-containing ph 21.3 1.3E+02 0.0045 23.3 4.7 38 108-145 46-83 (153)
37 3rkv_A Putative peptidylprolyl 21.2 83 0.0028 22.1 3.3 39 116-154 114-152 (162)
38 2p32_A Heat shock 70 kDa prote 21.1 2.2E+02 0.0075 20.8 5.8 51 104-154 40-91 (120)
39 2prs_A High-affinity zinc upta 21.0 1E+02 0.0034 25.8 4.3 96 104-203 118-221 (284)
40 3cx3_A Lipoprotein; zinc-bindi 20.6 1E+02 0.0035 25.8 4.2 95 104-203 121-224 (284)
41 3hh8_A Metal ABC transporter s 20.4 1E+02 0.0035 26.1 4.3 49 104-156 125-174 (294)
42 2ope_A PILX; type IV pilin, mi 20.3 80 0.0027 25.3 3.3 53 109-167 6-62 (128)
43 2voz_A FUTA2, periplasmic iron 20.2 22 0.00074 28.8 0.0 12 43-54 5-16 (346)
No 1
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=100.00 E-value=1.2e-43 Score=280.50 Aligned_cols=103 Identities=29% Similarity=0.564 Sum_probs=100.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHhhhhhc
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA 183 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~ 183 (208)
.+.||++|.+||++||++||++|++ |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus 9 ~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~ 87 (115)
T 2kmf_A 9 GTGLTGNYSQDTLTVIATLREAIDL-PQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSY 87 (115)
T ss_dssp CSSCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence 5779999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC
Q 028492 184 GPSAPLPGEVKSEILNDLDTAEKFL 208 (208)
Q Consensus 184 GpnrPLPeklK~RLlqEL~~AE~aL 208 (208)
| ++|||+|+|+||++||++||++|
T Consensus 88 g-~~PlPek~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 88 G-ARPIPEKLKKRLQLEFTQAERSI 111 (115)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999986
No 2
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=100.00 E-value=2.8e-43 Score=277.74 Aligned_cols=103 Identities=22% Similarity=0.425 Sum_probs=100.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHhhhhhc
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA 183 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~ 183 (208)
.+.||++|.+||++||++||++|+| |+|++++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus 5 ~~~L~~~Y~~dT~~Vv~~lr~~l~l-~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~ 83 (113)
T 2y6x_A 5 PTGLTGNFREDTLALISSLREAIAL-PENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY 83 (113)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCccHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence 3569999999999999999999999 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC
Q 028492 184 GPSAPLPGEVKSEILNDLDTAEKFL 208 (208)
Q Consensus 184 GpnrPLPeklK~RLlqEL~~AE~aL 208 (208)
| ++|||+|+|+||++||++||++|
T Consensus 84 g-~~PlPek~k~Rl~~el~~AE~al 107 (113)
T 2y6x_A 84 P-NRPLPEKLKARLEQEFKQVELAL 107 (113)
T ss_dssp T-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999986
No 3
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=88.84 E-value=0.22 Score=31.56 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=15.3
Q ss_pred hhhHHHHHhhhhhHHHHHHhhcCCCC
Q 028492 43 SSRRHVISCSSTALVAILTFNCGLAP 68 (208)
Q Consensus 43 ~sRr~~l~~~~~~~~a~~~~~~~~~p 68 (208)
.+||+||.+++++ ++....+..+|
T Consensus 3 lsRR~FLK~~aaa--~Aaaaag~~~~ 26 (35)
T 2pq4_B 3 LSRRSFMKANAVA--AAAAAAGLSVP 26 (35)
T ss_dssp CCSHHHHHHHHHH--HHHHHHCCCCS
T ss_pred CcHHHHHHHHHHH--HHHHHhcccch
Confidence 4799999988765 33333345555
No 4
>3nrh_A Uncharacterized protein BF1032; predominantly alpha-helical protein, structural genomics, PS protein structure initiative; 1.80A {Bacteroides fragilis}
Probab=69.25 E-value=15 Score=30.72 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=69.2
Q ss_pred hhhhhHHHHHhhhhhHHHHHHhhcCCCCchhhhhcccCCC-Cccc---c------cc---ccchhcccCCCCcCcCCCCC
Q 028492 41 AASSRRHVISCSSTALVAILTFNCGLAPLPVQAEDMSNGQ-DEKE---E------GV---VGAIKSLFDPNEKTKSGKVL 107 (208)
Q Consensus 41 ~~~sRr~~l~~~~~~~~a~~~~~~~~~p~~~~A~~e~~~~-~~~~---~------g~---~~~~~~~fdp~~~~ksg~~L 107 (208)
+..+|++|+..+.-. +..|-+....+|...-.++..... .+++ . .+ .+.....|||+.+. ++.+.
T Consensus 31 ~~~~~~~fi~~~~kl-Lp~Ly~k~s~Lp~~e~~~~~~~e~~Vte~d~~~lr~~la~lLg~~D~Y~evfdpdm~~-sd~p~ 108 (182)
T 3nrh_A 31 ESMKRSTFVDTTLKI-LPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLASILAEKDDYLEVFLPDMAY-SDEPI 108 (182)
T ss_dssp GGSCHHHHHHHHHHH-HHHHHHHHHTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHGGGSEEEC-------------C
T ss_pred ccCCHHHHHHHHHHH-HHHHHHHHhcCcccccccccccccccCHHHHHHHHHHHHHHcCCCCceeeeecccccc-CCCcc
Confidence 356899999998654 577777777777432211111111 1111 0 12 23446789996655 66899
Q ss_pred cHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCC
Q 028492 108 PKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPS 186 (208)
Q Consensus 108 Pk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gpn 186 (208)
++.-.+|--+|.+-|+..|.. +-...+.+ .+..-.-...|.+.|-. .+-.||++| |+-.|-+.
T Consensus 109 ~~~iSdDLaDIy~dLk~gL~~~~~G~~e~m---~eALw~wq~~f~~~WG~-----------~l~~alRAL--h~~~y~~~ 172 (182)
T 3nrh_A 109 KKNISEDLADIYQDIKDFIFVFQLGLNETM---NDSLAICQENFGLLWGQ-----------KLVNTMRAL--HDVKYSPK 172 (182)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHTCCHHHH---HHHHHHHHHHHHHTHHH-----------HHHHHHHHH--HHHHHSCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCcchH---HHHHHHHHHHHHHHHHH-----------HHHHHHHHH--HHHHhCch
Confidence 999999999999999999997 22232222 33334445567777732 344555555 55555444
Q ss_pred CC
Q 028492 187 AP 188 (208)
Q Consensus 187 rP 188 (208)
..
T Consensus 173 ~~ 174 (182)
T 3nrh_A 173 AR 174 (182)
T ss_dssp CC
T ss_pred hh
Confidence 33
No 5
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5
Probab=53.20 E-value=8.2 Score=32.79 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcc
Q 028492 110 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEE 164 (208)
Q Consensus 110 ~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~ 164 (208)
+.++|-..+++.|-+-|.+++...+. ......+-...++|+.|||.+-..+|++
T Consensus 233 DLv~dP~~~l~~l~~FLGl~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 286 (287)
T 1tex_A 233 YLWRNLTEVVGTVLEALGQDPRLAPK-PVLERQADQRSDEWVERYRRDAQRDGLP 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTCC---------------CCSTTTC-C-CCSCCC
T ss_pred HHHhCHHHHHHHHHHHhCCCccccCC-chhhcccCCchHHHHHHHHHHHHhcCCC
Confidence 33455567777888888885544433 2344455555699999999999999876
No 6
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=51.35 E-value=36 Score=32.88 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHH--HhhhhhcCCCCCCChHHHHHHHHHHHH
Q 028492 138 RNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSL--ASFYSKAGPSAPLPGEVKSEILNDLDT 203 (208)
Q Consensus 138 ~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsL--AGhYss~GpnrPLPeklK~RLlqEL~~ 203 (208)
+.++.+++++.||+..+-....+++.-....|.++++.+ ..+|.-+....-++++.+.++++.|.+
T Consensus 178 kYa~~a~~ll~dWi~~np~~~g~~~~~~W~~l~~a~Rli~wi~~~~~l~~s~~~t~e~~~~~l~sL~~ 245 (702)
T 4fnv_A 178 KYIQSWIEVYKNWIENNPKPTTGPNTTSWWQLQVSTRIGDQVQLLEYFKNSVNFTPEWLSTFLVEFAE 245 (702)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSSCCSSTTCHHHHHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCccceeHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 368889999999999986555555556677899888754 345544433335889999999988753
No 7
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=51.26 E-value=5 Score=32.55 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhhHHHHHhhhhh
Q 028492 42 ASSRRHVISCSSTA 55 (208)
Q Consensus 42 ~~sRr~~l~~~~~~ 55 (208)
-.+||.||.+++++
T Consensus 9 ~~~rr~fl~~~~~a 22 (175)
T 4aay_B 9 DIGRRQFLRGGALA 22 (175)
T ss_dssp --------------
T ss_pred cccHHHHhhhhHHh
Confidence 67999999976554
No 8
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=49.14 E-value=54 Score=26.84 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCCCCCChHHHHH
Q 028492 117 ELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSE 196 (208)
Q Consensus 117 ~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~GpnrPLPeklK~R 196 (208)
.+++.+-..|.- +......-.+..++.|++.+..| |.--+-|-.+|+.||++ ++++-|++
T Consensus 37 ~~~~~vl~~lk~---~~~~~~~~~~~~~~~v~~~l~p~-----------~D~~~~a~~vLG~~wr~------at~~Qr~~ 96 (211)
T 2qgu_A 37 TAVDDVLATIKG---DPDLRGGNLQKVFQLVDQKIVPR-----------ADFKRTTQIAMGRFWSQ------ATPEQQQQ 96 (211)
T ss_dssp HHHHHHHHHHHT---CHHHHTTCHHHHHHHHHHHTGGG-----------BCHHHHHHHHHGGGTTT------SCHHHHHH
T ss_pred HHHHHHHHHHhC---CccccccCHHHHHHHHHHHhhhh-----------cCHHHHHHHHHhHhHhh------CCHHHHHH
Confidence 344455555553 22222233455677777777666 33334566678888776 57888888
Q ss_pred HHHHHHH
Q 028492 197 ILNDLDT 203 (208)
Q Consensus 197 LlqEL~~ 203 (208)
..+.|.+
T Consensus 97 F~~~F~~ 103 (211)
T 2qgu_A 97 IQDGFKS 103 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 9
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=41.79 E-value=19 Score=32.66 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCCchHHHhhHHHHHHHHHHHHhhccCCCC
Q 028492 129 DPKDIANFRRNADSAKESIRDYLSNWRGQKT 159 (208)
Q Consensus 129 dp~D~~~~r~aa~~AKe~IndyvsrYRr~~~ 159 (208)
.|.|++.+.++++...+.|+.||..||.+++
T Consensus 425 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~~~~ 455 (472)
T 4ebb_A 425 HPEDPASVVEARKLEATIIGEWVKAARREQQ 455 (472)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4688899999999999999999999986643
No 10
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=38.64 E-value=63 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCCC-------------------------------------cchHHHHHHHHHHHHhhhhh
Q 028492 140 ADSAKESIRDYLSNWRGQKTVAG-------------------------------------EESYVELEKAIRSLASFYSK 182 (208)
Q Consensus 140 a~~AKe~IndyvsrYRr~~~V~G-------------------------------------~~SFttM~TALNsLAGhYss 182 (208)
++..++.++..+.|||..|.|-+ .....++...++.++.+-++
T Consensus 134 ~~~~~~~~~~~v~r~kn~psi~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 213 (351)
T 3vup_A 134 QSYIDKALKPIVNHVKGHVALGGWDLMNEPEGMMIPDKHNAEKCYDTTALKNSGAGWAGNKYLYQDILRFLNWQADAIKT 213 (351)
T ss_dssp HHHHHHTHHHHHHHTTTCTTBCCEEEEECGGGGBCCSCCCSSGGGCCGGGTTSSTTTTCSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecccccccccccccccccccccchhhcccccccccccchhhHHHHHHHHHHHhhc
Confidence 44456667888999999998763 23457788888899998888
Q ss_pred cCCCCCC
Q 028492 183 AGPSAPL 189 (208)
Q Consensus 183 ~GpnrPL 189 (208)
..|++++
T Consensus 214 ~dp~~lv 220 (351)
T 3vup_A 214 TDPGALV 220 (351)
T ss_dssp HSTTCCE
T ss_pred cCCCCee
Confidence 8888886
No 11
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=37.73 E-value=6.9 Score=33.18 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhhHHHHHHhhcC
Q 028492 43 SSRRHVISCSSTALVAILTFNCG 65 (208)
Q Consensus 43 ~sRr~~l~~~~~~~~a~~~~~~~ 65 (208)
+|||||+-++++.++ +++.+|+
T Consensus 3 ~~~~~~~~~~~~~~~-~~laaCg 24 (430)
T 2w7y_A 3 SSHHHHHHSSGLVPR-GSHMASG 24 (430)
T ss_dssp -----------------------
T ss_pred CccccccccccHHHH-HHHHHhc
Confidence 689999999987654 4444554
No 12
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=37.06 E-value=13 Score=29.63 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCCC
Q 028492 165 SYVELEKAIRSLASFYSKAGPSAPL 189 (208)
Q Consensus 165 SFttM~TALNsLAGhYss~GpnrPL 189 (208)
|++-+..+|+-+|.||..+-|..|=
T Consensus 69 slt~Lkg~LtmmA~hYkq~CppTpE 93 (127)
T 2gmf_A 69 SLTKLKGPLTMMASHYKQHCPPTPE 93 (127)
T ss_dssp GGGGGHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHhccHHHHHHHHHHhcCCCCCC
Confidence 8999999999999999999776653
No 13
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.67 E-value=53 Score=20.81 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=24.5
Q ss_pred CCCcchHHHHHHHHHHHHhhhhhcCCCCC-CC
Q 028492 160 VAGEESYVELEKAIRSLASFYSKAGPSAP-LP 190 (208)
Q Consensus 160 V~G~~SFttM~TALNsLAGhYss~GpnrP-LP 190 (208)
.+|-.-|..-|.-|+.+=.||..| |+.+ +|
T Consensus 6 lsg~~~f~~FY~rlk~Ike~Hrr~-P~~~~~~ 36 (38)
T 2dt7_A 6 ISGPNEFAEFYNRLKQIKEFHRKH-PNEICVP 36 (38)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHSC-CSSCCCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhC-CCccccC
Confidence 345556999999999999999997 8877 55
No 14
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=34.22 E-value=8.5 Score=38.24 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhhHHHHHHhhcCCCCc
Q 028492 43 SSRRHVISCSSTALVAILTFNCGLAPL 69 (208)
Q Consensus 43 ~sRr~~l~~~~~~~~a~~~~~~~~~p~ 69 (208)
.|||+||..++++++++.+.+|++.|.
T Consensus 3 ~sRR~FLK~~~a~~a~~~~~~~~~~~~ 29 (1015)
T 1kqf_A 3 VSRRQFFKICAGGMAGTTVAALGFAPK 29 (1015)
T ss_dssp ---------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCch
Confidence 589999998766533333334555453
No 15
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=32.10 E-value=9.6 Score=30.95 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.6
Q ss_pred hhhhHHHHHhhhhh
Q 028492 42 ASSRRHVISCSSTA 55 (208)
Q Consensus 42 ~~sRr~~l~~~~~~ 55 (208)
..+||+||..+.++
T Consensus 8 ~~~RR~Fl~~~~~~ 21 (187)
T 2qjy_C 8 AGTRRDFLYYATAG 21 (187)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 46899999765443
No 16
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=30.96 E-value=40 Score=30.09 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHHHhhccCCCCCCCcchHHHHHHHHHH---------HHhhhhhcCCCCCCCh---HHHHHHHHHHHH
Q 028492 146 SIRDYLSNWRGQKTVAGEESYVELEKAIRS---------LASFYSKAGPSAPLPG---EVKSEILNDLDT 203 (208)
Q Consensus 146 ~IndyvsrYRr~~~V~G~~SFttM~TALNs---------LAGhYss~GpnrPLPe---klK~RLlqEL~~ 203 (208)
.|+.|+.++..++.|-..+.+ ++.-|+- ++.+|.+.|--.||.. +..+.|.+.|++
T Consensus 23 ~V~~fL~~~~~d~~vi~~p~~--~~~~l~~~I~~~R~~k~~~~Y~~ig~gSPL~~~t~~q~~~L~~~L~~ 90 (362)
T 1lbq_A 23 ETYDFLYQLFADNDLIPISAK--YQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEVCKILDK 90 (362)
T ss_dssp GHHHHHHHHTTCCSSSCCCSS--SHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccccCCHH--HHHHHhhhcCccchHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHh
Confidence 678899999999988888766 5555554 8999999998888854 344456666643
No 17
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=30.89 E-value=13 Score=25.01 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=10.6
Q ss_pred hhhhHHHHHhhhhh
Q 028492 42 ASSRRHVISCSSTA 55 (208)
Q Consensus 42 ~~sRr~~l~~~~~~ 55 (208)
.++||+||-....+
T Consensus 8 dm~RRqfln~l~~G 21 (49)
T 1q90_R 8 DMNKRNIMNLILAG 21 (49)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 47899998776554
No 18
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=29.24 E-value=1.4e+02 Score=23.01 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHHHHH
Q 028492 110 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 170 (208)
Q Consensus 110 ~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFttM~ 170 (208)
+.-+||..-+..++|-... |-+.+ .+++++|+.|+++==+++ .+ ..|+.|.
T Consensus 32 ~~~~DA~sSasA~lE~~~y---d~Ea~----~~~~~Li~kyLa~~y~~~--~~-~~f~llK 82 (105)
T 4hfk_B 32 SLKEDADASAAAWLEASNL---PAENF----EKADEVIVSLLKQKVGGT--EP-GHYQILK 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHCCS---CHHHH----HHHHHHHHHHHTSCCBCS--SS-SCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHhC---CHHHh----HHHHHHHHHHHccccCCC--CC-CcchHHH
Confidence 6788999999999998887 55443 669999999998522322 23 5666665
No 19
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=28.86 E-value=20 Score=29.41 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=9.0
Q ss_pred hhhhhhhHHHHHh
Q 028492 39 VEAASSRRHVISC 51 (208)
Q Consensus 39 ~~~~~sRr~~l~~ 51 (208)
.+...+||.||-.
T Consensus 26 ~~~~~~RR~fl~~ 38 (196)
T 1pp9_E 26 KESSEARKGFSYL 38 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccCCchHHHHHHH
Confidence 3456789999643
No 20
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=28.02 E-value=45 Score=30.30 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=22.9
Q ss_pred CCCCchHHHhhHHHHHHHHHHHHhhccC
Q 028492 129 DPKDIANFRRNADSAKESIRDYLSNWRG 156 (208)
Q Consensus 129 dp~D~~~~r~aa~~AKe~IndyvsrYRr 156 (208)
++.|++.+.++++...+.|+.||+.|+.
T Consensus 418 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~ 445 (446)
T 3n2z_B 418 NALDPMSVLLARSLEVRHMKNWIRDFYD 445 (446)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888888888888888888888864
No 21
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=27.89 E-value=2e+02 Score=21.84 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhcC---CCCCc---hHHHhhHHHHH---------------HHHHHHHhhccCCCCCCCcch
Q 028492 107 LPKAYLKSARELVKTLRESLKE---DPKDI---ANFRRNADSAK---------------ESIRDYLSNWRGQKTVAGEES 165 (208)
Q Consensus 107 LPk~Y~~dTr~VV~tLReaL~l---dp~D~---~~~r~aa~~AK---------------e~IndyvsrYRr~~~V~G~~S 165 (208)
+=..|++++.+.++.|.+.|.. +|.|. ....|++-..| ..+-+.+..+|.........-
T Consensus 8 ll~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l 87 (146)
T 1i5n_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDI 87 (146)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 3457999999999999998842 45454 23333343333 234566777887665555555
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 028492 166 YVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT 203 (208)
Q Consensus 166 FttM~TALNsLAGhYss~GpnrPLPeklK~RLlqEL~~ 203 (208)
+..+..++..|...-.......+.+...-+.+++.|..
T Consensus 88 ~~~l~~~~D~l~~~l~~~~~~~~~~~~~~~~l~~~L~~ 125 (146)
T 1i5n_A 88 INLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQ 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 66676666666555444322234444444445555543
No 22
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=27.24 E-value=18 Score=30.67 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhhhhHHHHHH
Q 028492 41 AASSRRHVISCSSTALVAILT 61 (208)
Q Consensus 41 ~~~sRr~~l~~~~~~~~a~~~ 61 (208)
.-.+||.||+-.+.+||.+.+
T Consensus 20 ~~tsRRs~l~~lG~~l~g~a~ 40 (188)
T 3c75_L 20 GRTSRRGAIGRLGTVLAGAAL 40 (188)
T ss_dssp ---------------------
T ss_pred cccchHHHHHHHHHHHhhhhh
Confidence 468999999999877554433
No 23
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=26.94 E-value=94 Score=24.22 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCC----------------------cchHHHHHHHHHHHHhhhhhcCCCCCC
Q 028492 138 RNADSAKESIRDYLSNWRGQKTVAG----------------------EESYVELEKAIRSLASFYSKAGPSAPL 189 (208)
Q Consensus 138 ~aa~~AKe~IndyvsrYRr~~~V~G----------------------~~SFttM~TALNsLAGhYss~GpnrPL 189 (208)
..++..++.++..+.|||..|.|-+ ...-..++..++.++.+..+.-|++|+
T Consensus 151 ~~~~~~~~~~~~~~~r~k~~p~I~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~Dp~~lv 224 (387)
T 4awe_A 151 KIKEAFKRYVKAMVTRYRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLV 224 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEESCBSCCSCCCTTTSCCCCSSSCCHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHHHhhcCCCcceeEeccCCCCCCCCCccccccccccccchHHHHHHHHHHHHHHHHhCCCCcE
Confidence 4567778888999999999988742 223466777788888888887787765
No 24
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=26.70 E-value=1.1e+02 Score=21.20 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhhcCCCCCCChHHHHHHHHHHHHH
Q 028492 170 EKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTA 204 (208)
Q Consensus 170 ~TALNsLAGhYss~GpnrPLPeklK~RLlqEL~~A 204 (208)
...+++++-|-++ .+.-...+.+|.||+.+|..-
T Consensus 25 ~eC~~EV~rfLs~-~eg~d~~d~~r~rLl~HL~~~ 58 (64)
T 2db7_A 25 RECLAEVARYLSI-IEGLDASDPLRVRLVSHLNNY 58 (64)
T ss_dssp HHHHHHHHHHHHH-TSCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHHHH
Confidence 3588889888888 466555577999999999763
No 25
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=26.63 E-value=1.9e+02 Score=21.18 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=39.9
Q ss_pred hHHHhhHHHHHHHHHHHHhhccCCCCCCCcc-hHHHHHHHHHHHHhhhhh----cCCCCCCChHHHHHHHHHH
Q 028492 134 ANFRRNADSAKESIRDYLSNWRGQKTVAGEE-SYVELEKAIRSLASFYSK----AGPSAPLPGEVKSEILNDL 201 (208)
Q Consensus 134 ~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~-SFttM~TALNsLAGhYss----~GpnrPLPeklK~RLlqEL 201 (208)
..+.+..+...+.+.+++.+......+.... ....+-..+-.+..+|.. ..+..+++++.-.++...+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212)
T 3rh2_A 112 ARYLKVQQAVLEQSIAVLNQLKKDGILQIEDERIADLADTIKMIIGFWISYKLTQSSIATISKASLYEGLLRV 184 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSBCCCGGGHHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHH
Confidence 3444556667777778888877666665433 244455555444555543 3466777777665555543
No 26
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.17 E-value=23 Score=25.88 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=36.0
Q ss_pred HHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHhhhhhcCCC------CCCChHHHHHHHHHHHH
Q 028492 145 ESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPS------APLPGEVKSEILNDLDT 203 (208)
Q Consensus 145 e~IndyvsrYRr~~~V~G~~SFttM~TALNsLAGhYss~Gpn------rPLPeklK~RLlqEL~~ 203 (208)
.++-+|+..|+..-.-.+.-.+.+.+.|+++|-.|=..+..- .=+=+++-++|.+.|.+
T Consensus 16 ~lf~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 16 PLFVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 345666666666544556777889999999998764332100 01225666666666654
No 27
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.58 E-value=1e+02 Score=26.00 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR 155 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR 155 (208)
=|-=|.++ ..+++++++.|.. ||.+...+++.++.-.+.+.+.-..|+
T Consensus 105 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~ 153 (282)
T 3mfq_A 105 FWFSIPLY----KSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVE 153 (282)
T ss_dssp GGGSHHHH----HHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHH----HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667766 6777777877764 888888888877777777777766665
No 28
>4ax2_A RAP1B; toxin, resistance protein, helical fold, S-SAD phasing; 1.88A {Serratia marcescens}
Probab=23.88 E-value=83 Score=25.38 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhh-ccCCCCCCCcchHHHHH-------HHHHHHHhhhh
Q 028492 110 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSN-WRGQKTVAGEESYVELE-------KAIRSLASFYS 181 (208)
Q Consensus 110 ~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~Indyvsr-YRr~~~V~G~~SFttM~-------TALNsLAGhYs 181 (208)
+..+|+..=+..|+|-... |-++ +-++.+.+|..|++| |..++.+....-|..|. ..|+.|..=|.
T Consensus 55 ~~~~DA~sSasAllEwt~y---D~E~---~~~ai~~LV~kYLar~~~~~~~~~~~~k~~lLKCLDLYHS~ELd~l~kk~V 128 (142)
T 4ax2_A 55 AFSLDAARTANAMREWMPF---DIES---GDEKINVLIDKYKSRINEFHSETKDKSQGVTLNCLRLYHSPELDKLSRQLI 128 (142)
T ss_dssp HHHHHHHHHHHHHGGGSCB---CHHH---HHHHHHHHHHHHTTCCCCCCC----CCCCHHHHHHHHHHCHHHHHHHHHTB
T ss_pred hhhHhHHHHHHHHHHhccC---Chhh---CcHHHHHHHHHHHhccCCCCcccccccccceeehhhhhcCHHHHHHHHHHh
Confidence 5678999999999998887 4433 345778999999998 66655555444455442 45666666554
No 29
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.54 E-value=13 Score=31.67 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc-------CCCCCCCcchHHHHHHH
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKA 172 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TA 172 (208)
=|-=|.++ ..+++++++.|.. ||.+...+++.++.-.+.+.+.-..|| +.+-|..-+.|.=+...
T Consensus 134 ~Wldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~ 206 (291)
T 1pq4_A 134 IWLSPTLV----KRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARD 206 (291)
T ss_dssp GGGCHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHH
T ss_pred ccCCHHHH----HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHH
Confidence 46667777 4555555555553 888888777777766666665555554 34445555555544443
No 30
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=23.50 E-value=1.1e+02 Score=23.23 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHHH
Q 028492 107 LPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKES 146 (208)
Q Consensus 107 LPk~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe~ 146 (208)
+=..|++|+...+..|+++++..+.|....++.+...|-+
T Consensus 46 lv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGs 85 (149)
T 1yvi_A 46 VVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGS 85 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhH
Confidence 3457999999999999999996445777766666665543
No 31
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=23.33 E-value=13 Score=31.99 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc-------CCCCCCCcchHHHHHHH
Q 028492 103 SGKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKA 172 (208)
Q Consensus 103 sg~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TA 172 (208)
-=|-=|.++ ..+++++++.|.. ||.+...+++.++.-.+.+.+.-..|| +.+-|...+.|.=+...
T Consensus 133 HvWldp~n~----~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~ 206 (312)
T 2o1e_A 133 HVWLSPVLA----QKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKE 206 (312)
T ss_dssp GGGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHH
T ss_pred CcccCHHHH----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHH
Confidence 346667777 4555555555553 888888777777766666665555554 34445555555554433
No 32
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.85 E-value=86 Score=26.45 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc-------CCCCCCCcchHHHH
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVEL 169 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM 169 (208)
=|-=|.++ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +..-|...++|.=+
T Consensus 123 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf 192 (286)
T 3gi1_A 123 TWTDPVLA----GEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYL 192 (286)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHH
T ss_pred eecCHHHH----HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHH
Confidence 46677777 4556666666654 888888877777776666666655554 33344444555443
No 33
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=22.71 E-value=99 Score=27.65 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHhhccCCCCCCCcchHHHHH-----HHHHHHHhhhhhcCCCCCCC---hHHHHHHHHHHHH
Q 028492 146 SIRDYLSNWRGQKTVAGEESYVELE-----KAIRSLASFYSKAGPSAPLP---GEVKSEILNDLDT 203 (208)
Q Consensus 146 ~IndyvsrYRr~~~V~G~~SFttM~-----TALNsLAGhYss~GpnrPLP---eklK~RLlqEL~~ 203 (208)
.|+.|+.+..+++.|-..+...-+. .=....+.+|.+.|-..||- ++..+.|.+.|++
T Consensus 20 ~V~~fL~~~~~d~~Vi~~P~~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~~~L~~~L~~ 85 (359)
T 3hcn_A 20 DVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDE 85 (359)
T ss_dssp GHHHHHHHHHTCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccccchHHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777666422221 11247899999998778886 3444556555543
No 34
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=22.03 E-value=19 Score=31.93 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhhH
Q 028492 44 SRRHVISCSSTAL 56 (208)
Q Consensus 44 sRr~~l~~~~~~~ 56 (208)
+||+||.++++++
T Consensus 28 ~rr~fl~~~~~~~ 40 (433)
T 1h6d_A 28 LNRRALVGGGVGL 40 (433)
T ss_dssp -------------
T ss_pred hhhHHHhhcchhh
Confidence 4999999987663
No 35
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=21.78 E-value=1e+02 Score=24.60 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhc---CCCCCc-hHHHhhHHHHHHHHHHHHhhccCCCCC--CCcchHHHHHHHHHHHH
Q 028492 116 RELVKTLRESLK---EDPKDI-ANFRRNADSAKESIRDYLSNWRGQKTV--AGEESYVELEKAIRSLA 177 (208)
Q Consensus 116 r~VV~tLReaL~---ldp~D~-~~~r~aa~~AKe~IndyvsrYRr~~~V--~G~~SFttM~TALNsLA 177 (208)
.+|++.++.--. ++|.-. .=|+..-+..+..=..++.+|+..+.. ..-+.-++++-.|+.|.
T Consensus 41 ~eVL~r~~~~a~~~gL~~~~i~~ifr~Ii~~S~~~Q~~~~~~w~~~~~~~~~~~~dL~~~R~~ld~l~ 108 (166)
T 2fp1_A 41 EQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLN 108 (166)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCSSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 567777776544 322212 227778888888888899999865543 22233356666655543
No 36
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.28 E-value=1.3e+02 Score=23.32 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCchHHHhhHHHHHH
Q 028492 108 PKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKE 145 (208)
Q Consensus 108 Pk~Y~~dTr~VV~tLReaL~ldp~D~~~~r~aa~~AKe 145 (208)
=..|++|+.+.+..|+.+++..|.|-...++.+...|-
T Consensus 46 l~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 83 (153)
T 3us6_A 46 VSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKG 83 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 34799999999999999998655577776666555553
No 37
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=21.18 E-value=83 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhc
Q 028492 116 RELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNW 154 (208)
Q Consensus 116 r~VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrY 154 (208)
.+-++.++.+|+++|.|..........+++.++++-.+-
T Consensus 114 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 114 DEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899888777565566666666666654443
No 38
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.06 E-value=2.2e+02 Score=20.83 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCC-CCCchHHHhhHHHHHHHHHHHHhhc
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKED-PKDIANFRRNADSAKESIRDYLSNW 154 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~ld-p~D~~~~r~aa~~AKe~IndyvsrY 154 (208)
+..|+.+-.+...+.|+.|++.|+-+ ..|...+....++..+.+..++.+.
T Consensus 40 ~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 40 KDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688898899999999999999742 1366778888899999999888764
No 39
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=21.04 E-value=1e+02 Score=25.78 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc-------CCCCCCCcchHHHHHHHHHH
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKAIRS 175 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TALNs 175 (208)
=|-=|.++. .+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|...+.|.=+....+-
T Consensus 118 ~Wldp~~~~----~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl 193 (284)
T 2prs_A 118 LWLSPEIAR----ATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGL 193 (284)
T ss_dssp GGGCHHHHH----HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTC
T ss_pred ccCCHHHHH----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCC
Confidence 477777774 555555555553 888887777777666666655555444 44455555565555444321
Q ss_pred HHhhhhhcCCCCCCChHHHHHHHHHHHH
Q 028492 176 LASFYSKAGPSAPLPGEVKSEILNDLDT 203 (208)
Q Consensus 176 LAGhYss~GpnrPLPeklK~RLlqEL~~ 203 (208)
=--....-.|...-+.+.-.+|.+.+++
T Consensus 194 ~~~~~~~~~~~~eps~~~l~~l~~~ik~ 221 (284)
T 2prs_A 194 TPLGHFTVNPEIQPGAQRLHEIRTQLVE 221 (284)
T ss_dssp CCCEEEESSTTSCCCHHHHHHHHHHHHH
T ss_pred eEeEeeccCCCCCCCHHHHHHHHHHHHH
Confidence 1000011123455555555666555543
No 40
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.62 E-value=1e+02 Score=25.81 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhcc-------CCCCCCCcchHHHHHHHHHH
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWR-------GQKTVAGEESYVELEKAIRS 175 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYR-------r~~~V~G~~SFttM~TALNs 175 (208)
=|-=|.+. ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..|+ +.+-|...+.|.=+....+-
T Consensus 121 ~Wldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl 196 (284)
T 3cx3_A 121 TWLDPEKA----GEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGL 196 (284)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTC
T ss_pred cccCHHHH----HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCC
Confidence 46667777 4555555555553 888887777777766666665555444 44455555555554443321
Q ss_pred H-HhhhhhcCCCCCCChHHHHHHHHHHHH
Q 028492 176 L-ASFYSKAGPSAPLPGEVKSEILNDLDT 203 (208)
Q Consensus 176 L-AGhYss~GpnrPLPeklK~RLlqEL~~ 203 (208)
= .+. ..-.|....+.+.-.+|.+.+++
T Consensus 197 ~~~~~-~~~~~~~eps~~~l~~l~~~ik~ 224 (284)
T 3cx3_A 197 NQLGI-AGISPEQEPSPRQLTEIQEFVKT 224 (284)
T ss_dssp CEEEE-ECSSTTCCCCSHHHHHHHHHHHH
T ss_pred EEeec-cCCCCCCCCCHHHHHHHHHHHHH
Confidence 0 011 11123445555555566655543
No 41
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.37 E-value=1e+02 Score=26.13 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcC-CCCCchHHHhhHHHHHHHHHHHHhhccC
Q 028492 104 GKVLPKAYLKSARELVKTLRESLKE-DPKDIANFRRNADSAKESIRDYLSNWRG 156 (208)
Q Consensus 104 g~~LPk~Y~~dTr~VV~tLReaL~l-dp~D~~~~r~aa~~AKe~IndyvsrYRr 156 (208)
=|-=|.++ ..+++++.+.|.. ||.+...+++.++.-.+.+.+.-..||.
T Consensus 125 vWldp~~~----~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~ 174 (294)
T 3hh8_A 125 AWLNLENG----IIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKS 174 (294)
T ss_dssp GGGSHHHH----HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCHHHH----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777 5556666666554 8989888888888888888777777763
No 42
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=20.33 E-value=80 Score=25.26 Aligned_cols=53 Identities=13% Similarity=0.257 Sum_probs=34.9
Q ss_pred HHHHHHHHH----HHHHHHHHhcCCCCCchHHHhhHHHHHHHHHHHHhhccCCCCCCCcchHH
Q 028492 109 KAYLKSARE----LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 167 (208)
Q Consensus 109 k~Y~~dTr~----VV~tLReaL~ldp~D~~~~r~aa~~AKe~IndyvsrYRr~~~V~G~~SFt 167 (208)
+.|..++.. +-+.|++-|=-+|.++ .+..+..+..||..|+-+|.+.+.=+|+
T Consensus 6 kgyqsqa~~emv~In~~lk~~~vknP~~~------~~~lk~kl~~Fi~~yk~~~~ia~KYtfS 62 (128)
T 2ope_A 6 KGYQSQLYTEMVGINNISKQFILKNPLDD------NQTIKSKLERFVSGYKMNPKIAEKYNVS 62 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSSCC------HHHHHHHHHHHHHHCCCCHHHHTTEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCcchh------hhhHHHHHHhhhcccccChhhhhceeee
Confidence 345555443 3344444444478666 5567788899999999998887766654
No 43
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=20.22 E-value=22 Score=28.84 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhh
Q 028492 43 SSRRHVISCSST 54 (208)
Q Consensus 43 ~sRr~~l~~~~~ 54 (208)
.+||+||+++++
T Consensus 5 ~~rr~~l~~~~a 16 (346)
T 2voz_A 5 ISRRTFFVGGTA 16 (346)
T ss_dssp ------------
T ss_pred chHHHHHHHHHH
Confidence 569999986654
Done!